mutation predictions | marginal predictions | summary statistics | genome diff | command line log
|
breseq version 0.33.1
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Predicted mutations | |||||
|---|---|---|---|---|---|
| evidence | position | mutation | annotation | gene | description |
| RA | 139 | Δ1 bp | intergenic (–/‑52) | – / → nu1 | –/DNA packaging protein |
| RA | 14,266 | +G | intergenic (+139/‑10) | L → / → K | tail component/tail component |
| RA | 20,661 | N→G | ?338E (NAA→GAA) ?36S (TNT→TCT) |
orf‑401 → orf206b ← |
Tail fiber protein hypothetical protein |
| RA | 20,835 | +C | coding (1186/1206 nt) | orf‑401 → | Tail fiber protein |
| RA | 21,714 | G→A | S229N (AGC→AAC) | orf‑314 → | Tail fiber |
| RA | 31,016 | T→C | E3E (GAA→GAG) N61D (AAC→GAC) |
orf61 ← orf63 ← |
hypothetical protein hypothetical protein |
| RA | 34,934 | A→G | G151G (GGA→GGG) | lambdap48 → | Superinfection exclusion protein B |
| RA | 37,818 | Δ1 bp | coding (123/714 nt) | cI ← | repressor |
| RA | 45,618 | T→C | F42F (TTT→TTC) | R → | endolysin |
| RA | 46,957 | +A | intergenic (‑205/+85) | bor ← / ← lambdap78 | Bor protein precursor/putative envelope protein |
| RA | 46,985 | C→T | intergenic (‑233/+57) | bor ← / ← lambdap78 | Bor protein precursor/putative envelope protein |
| RA | 46,992 | C→T | intergenic (‑240/+50) | bor ← / ← lambdap78 | Bor protein precursor/putative envelope protein |
| RA | 47,004 | G→A | intergenic (‑252/+38) | bor ← / ← lambdap78 | Bor protein precursor/putative envelope protein |
| RA | 47,129 | A→G | H149H (CAT→CAC) | lambdap78 ← | putative envelope protein |
| RA | 47,143 | C→T | V145I (GTT→ATT) | lambdap78 ← | putative envelope protein |
| RA | 47,243 | G→A | N111N (AAC→AAT) | lambdap78 ← | putative envelope protein |
| RA | 47,315 | G→A | ?87I (NTC→ATT) | lambdap78 ← | putative envelope protein |
| RA | 47,317 | N→T | ?87I (NTC→ATT) | lambdap78 ← | putative envelope protein |
| RA | 47,360 | G→A | N72N (AAC→AAT) | lambdap78 ← | putative envelope protein |
| RA | 47,398 | C→T | D60N (GAC→AAC) | lambdap78 ← | putative envelope protein |
| RA | 47,509 | T→C | T23A (ACG→GCG) | lambdap78 ← | putative envelope protein |
| RA | 47,529 | C→T | R16K (AGG→AAG) | lambdap78 ← | putative envelope protein |
| RA | 47,575 | C→A | M1M (GTG→TTG) † | lambdap78 ← | putative envelope protein |
| RA | 47,669 | T→C | intergenic (‑94/‑69) | lambdap78 ← / → lambdap79 | putative envelope protein/hypothetical protein |
| RA | 47,878 | A→G | R47R (AGA→AGG) | lambdap79 → | hypothetical protein |
| RA | 47,973 | T→C | intergenic (+29/–) | lambdap79 → / – | hypothetical protein/– |
| RA | 47,977 | 2 bp→AC | intergenic (+33/–) | lambdap79 → / – | hypothetical protein/– |
| Unassigned missing coverage evidence | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_001416 | 1 | 2 | 2 | NA [0] | [0] 154 | –/nu1 | –/DNA packaging protein |
| * | * | ÷ | NC_001416 | 21732 | 27729 | 5998 | 28 [23] | [25] 33 | [orf‑314]–ea59 | [orf‑314],orf‑194,ea47,ea31,ea59 |
| * | * | ÷ | NC_001416 | 48462 | 48502 | 41 | 27 [25] | [0] NA | lambdap79/– | hypothetical protein/– |