Uses of Class ij.ImageStack (ImageJ API)

Packages that use ImageStack
Package	Description
ij
ij.gui
ij.plugin
ij.plugin.filter
ij.process
ij.util

Uses of ImageStack in ij

Subclasses of ImageStack in ij
Modifier and Type	Class	Description
`class`	`VirtualStack`	This class represents an array of disk-resident images.

Methods in ij that return ImageStack
Modifier and Type	Method	Description
`ImageStack`	ImageStack.`convertToFloat()`	Creates a float version of this stack.
`static ImageStack`	ImageStack.`create(int width, int height, int depth, int bitdepth)`	Creates a new ImageStack.
`ImageStack`	ImagePlus.`createEmptyStack()`	Returns an empty image stack that has the same width, height and color table as this image.
`ImageStack`	ImageStack.`crop(int x, int y, int z, int width, int height, int depth)`	Creates a new stack by cropping this one.
`ImageStack`	ImageStack.`duplicate()`	Duplicates this stack.
`ImageStack`	ImagePlus.`getImageStack()`	Returns the base image stack.
`ImageStack`	ImagePlus.`getStack()`	Returns the image stack.
`ImageStack`	VirtualStack.`sortDicom(String[] strings, String[] info, int maxDigits)`

Methods in ij with parameters of type ImageStack
Modifier and Type	Method	Description
`void`	ImagePlus.`setStack(ImageStack stack)`	Replaces the image with the specified stack and updates the display.
`void`	ImagePlus.`setStack(ImageStack newStack, int channels, int slices, int frames)`
`void`	ImagePlus.`setStack(String title, ImageStack newStack)`	Replaces the image with the specified stack and updates the display.

Constructors in ij with parameters of type ImageStack
Constructor	Description
`ImagePlus(String title, ImageStack stack)`	Constructs an ImagePlus from a stack.

Uses of ImageStack in ij.gui

Subclasses of ImageStack in ij.gui

Modifier and Type Class Description

class PlotVirtualStack
This is a virtual stack of frozen plots.

Uses of ImageStack in ij.plugin

Subclasses of ImageStack in ij.plugin
Modifier and Type	Class	Description
`class`	`AVI_Reader`	ImageJ Plugin for reading an AVI file into an image stack (one slice per video frame) Restrictions and Notes: - Only few formats supported: - uncompressed 8 bit with palette (=LUT) - uncompressed 8 & 16 bit grayscale - uncompressed 24 & 32 bit RGB (alpha channel ignored) - uncompressed 32 bit AYUV (alpha channel ignored) - various YUV 4:2:2 and 4:2:0 compressed formats (i.e., formats with full luminance resolution, but reduced chroma resolution - png or jpeg-encoded individual frames.
`class`	`FileInfoVirtualStack`	This plugin opens a multi-page TIFF file, or a set of raw images, as a virtual stack.
`class`	`ListVirtualStack`	This plugin opens images specified by list of file paths as a virtual stack.

Methods in ij.plugin that return ImageStack
Modifier and Type	Method	Description
`ImageStack`	StackCombiner.`combineHorizontally(ImageStack stack1, ImageStack stack2)`
`ImageStack`	StackCombiner.`combineVertically(ImageStack stack1, ImageStack stack2)`
`ImageStack`	CanvasResizer.`expandStack(ImageStack stackOld, int wNew, int hNew, int xOff, int yOff)`
`static ImageStack`	Filters3D.`filter(ImageStack stackorig, int filter, float vx, float vy, float vz)`
`static ImageStack`	ChannelSplitter.`getChannel(ImagePlus imp, int c)`	Returns, as an ImageStack, the specified channel, where 'c' must be greater than zero and less than or equal to the number of channels in the image.
`ImageStack`	AVI_Reader.`makeStack(String path, int firstFrame, int lastFrame, boolean isVirtual, boolean convertToGray, boolean flipVertical)`	Create an ImageStack from an avi file with given path.
`ImageStack`	StackMaker.`makeStack(ImageProcessor ip, int rows, int columns, int border)`
`ImageStack`	RGBStackMerge.`mergeStacks(int w, int h, int d, ImageStack red, ImageStack green, ImageStack blue, boolean keep)`
`static ImageStack`	RGBStackMerge.`mergeStacks(ImageStack red, ImageStack green, ImageStack blue, boolean keepSource)`
`ImageStack`	PGM_Reader.`openFile(String path)`
`static ImageStack[]`	ChannelSplitter.`splitRGB(ImageStack rgb, boolean keepSource)`	Splits the specified RGB stack into three 8-bit grayscale stacks.
`ImageStack`	Straightener.`straightenStack(ImagePlus imp, Roi roi, int width)`

Methods in ij.plugin with parameters of type ImageStack
Modifier and Type	Method	Description
`ImageStack`	StackCombiner.`combineHorizontally(ImageStack stack1, ImageStack stack2)`
`ImageStack`	StackCombiner.`combineVertically(ImageStack stack1, ImageStack stack2)`
`ImagePlus`	RGBStackMerge.`createComposite(int w, int h, int d, ImageStack[] stacks, boolean keep)`	Deprecated; replaced by mergeChannels().
`ImageStack`	CanvasResizer.`expandStack(ImageStack stackOld, int wNew, int hNew, int xOff, int yOff)`
`static ImageStack`	Filters3D.`filter(ImageStack stackorig, int filter, float vx, float vy, float vz)`
`ImageStack`	RGBStackMerge.`mergeStacks(int w, int h, int d, ImageStack red, ImageStack green, ImageStack blue, boolean keep)`
`static ImageStack`	RGBStackMerge.`mergeStacks(ImageStack red, ImageStack green, ImageStack blue, boolean keepSource)`
`boolean`	StackReducer.`showDialog(ImageStack stack)`
`static ImageStack[]`	ChannelSplitter.`splitRGB(ImageStack rgb, boolean keepSource)`	Splits the specified RGB stack into three 8-bit grayscale stacks.

Uses of ImageStack in ij.plugin.filter

Fields in ij.plugin.filter declared as ImageStack
Modifier and Type	Field	Description
`ImageStack`	RGBStackSplitter.`blue`
`ImageStack`	RGBStackSplitter.`green`
`ImageStack`	RGBStackSplitter.`red`

Methods in ij.plugin.filter with parameters of type ImageStack
Modifier and Type	Method	Description
`void`	RGBStackSplitter.`split(ImageStack rgb, boolean keepSource)`	Deprecated; replaced by ChannelSplitter.splitRGB().

Uses of ImageStack in ij.process

Methods in ij.process that return ImageStack
Modifier and Type	Method	Description
`ImageStack`	StackProcessor.`crop(int x, int y, int width, int height)`	Crops the stack to the specified rectangle.
`ImageStack`	FHT.`getComplexTransform()`	Converts this FHT to a complex Fourier transform and returns it as a two slice stack.
`ImageStack`	ColorProcessor.`getHSBStack()`	Returns an ImageStack with three 8-bit slices, representing hue, saturation and brightness
`ImageStack`	StackProcessor.`resize(int newWidth, int newHeight)`	Creates a new stack with dimensions 'newWidth' x 'newHeight'.
`ImageStack`	StackProcessor.`resize(int newWidth, int newHeight, boolean averageWhenDownsizing)`
`ImageStack`	StackProcessor.`rotateLeft()`
`ImageStack`	StackProcessor.`rotateRight()`

Methods in ij.process with parameters of type ImageStack
Modifier and Type	Method	Description
`void`	StackProcessor.`copyBits(ImageStack src, int xloc, int yloc, int mode)`
`void`	StackProcessor.`filter3D(ImageStack out, float radx, float rady, float radz, int zmin, int zmax, int filter)`	3D filter using threads
`void`	BinaryInterpolator.`run(ImageStack stack)`

Constructors in ij.process with parameters of type ImageStack
Constructor	Description
`StackProcessor(ImageStack stack)`	Constructs a StackProcessor from a stack.
`StackProcessor(ImageStack stack, ImageProcessor ip)`	Constructs a StackProcessor from a stack.

Uses of ImageStack in ij.util

Methods in ij.util that return ImageStack
Modifier and Type	Method	Description
`static ImageStack`	DicomTools.`sort(ImageStack stack)`	Sorts a DICOM stack by image number.

Methods in ij.util with parameters of type ImageStack
Modifier and Type	Method	Description
`static double`	DicomTools.`getVoxelDepth(ImageStack stack)`	Calculates the voxel depth of the specified DICOM stack based on the distance between the first and last slices.
`static ImageStack`	DicomTools.`sort(ImageStack stack)`	Sorts a DICOM stack by image number.