Package ij.plugin
Class HyperStackConverter
java.lang.Object
ij.plugin.HyperStackConverter
- All Implemented Interfaces:
PlugIn
public class HyperStackConverter extends Object implements PlugIn
Implements the "Stack to HyperStack", "RGB to HyperStack"
and "HyperStack to Stack" commands.
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Field Summary
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Constructor Summary
Constructors Constructor Description HyperStackConverter()
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Method Summary
Modifier and Type Method Description void
run(String arg)
This method is called when the plugin is loaded.void
shuffle(ImagePlus imp, int order)
Changes the dimension order of a 4D or 5D stack from the specified order (CTZ, ZCT, ZTC, TCZ or TZC) to the XYCZT order used by ImageJ.static ImagePlus
toHyperStack(ImagePlus imp, int c, int z, int t)
Converts the specified stack into a hyperstack with 'c' channels, 'z' slices and 't' frames using the default ordering ("xyczt") and display mode ("Composite").static ImagePlus
toHyperStack(ImagePlus imp, int c, int z, int t, String mode)
Converts the specified stack into a hyperstack with 'c' channels, 'z' slices and 't' frames using the default ordering ("xyczt") and the specified display mode ("composite", "color" or "grayscale").static ImagePlus
toHyperStack(ImagePlus imp, int c, int z, int t, String order, String mode)
Converts the specified stack into a hyperstack with 'c' channels, 'z' slices and 't' frames.
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Field Details
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CZT
public static final int CZT- See Also:
- Constant Field Values
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CTZ
public static final int CTZ- See Also:
- Constant Field Values
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ZCT
public static final int ZCT- See Also:
- Constant Field Values
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ZTC
public static final int ZTC- See Also:
- Constant Field Values
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TCZ
public static final int TCZ- See Also:
- Constant Field Values
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TZC
public static final int TZC- See Also:
- Constant Field Values
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Constructor Details
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HyperStackConverter
public HyperStackConverter()
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Method Details
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run
Description copied from interface:PlugIn
This method is called when the plugin is loaded. 'arg', which may be blank, is the argument specified for this plugin in IJ_Props.txt. -
toHyperStack
Converts the specified stack into a hyperstack with 'c' channels, 'z' slices and 't' frames using the default ordering ("xyczt") and display mode ("Composite"). -
toHyperStack
Converts the specified stack into a hyperstack with 'c' channels, 'z' slices and 't' frames using the default ordering ("xyczt") and the specified display mode ("composite", "color" or "grayscale"). -
toHyperStack
public static ImagePlus toHyperStack(ImagePlus imp, int c, int z, int t, String order, String mode)Converts the specified stack into a hyperstack with 'c' channels, 'z' slices and 't' frames. The default "xyczt" order is used if 'order' is null. The default "composite" display mode is used if 'mode' is null.- Parameters:
imp
- the stack to be convertedc
- channelsz
- slicest
- framesorder
- hyperstack order ("default", "xyctz", "xyzct", "xyztc", "xytcz" or "xytzc")mode
- display mode ("composite", "color" or "grayscale")- Returns:
- the resulting hyperstack
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shuffle
Changes the dimension order of a 4D or 5D stack from the specified order (CTZ, ZCT, ZTC, TCZ or TZC) to the XYCZT order used by ImageJ.
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