# Spelling corrections for atom labels and abbreviations # that might not be correctly parsed by OCR engine # You can run osra with -d option to check the spelling correction # process - the output looks like: # OCR string --> Corrected String --> Final Output # Note that by default OSRA might try as many as 3 different resolutions # so you may have quite a bit of output to look through. Try a specific # resolution (with -r switch) or choose the best match. # Empty lines are ignored and lines starting with # are comments Ci Cl Cf Cl Cll Cl HN N NH N M N Hm N MN N N2 N NM N NH2 N H2N N NHZ N HZN N NH3 N nu N Hu N lU N HlU N lUH N H2Y N RN N MH N M2M N M N HnN N nIH N NHX N mH N NN N hN N Nh N OH O oH O Ho O HO O ol O On O on O no O nO O ON O oN O O4 O OM O Un O 4O O Mo O nU O UnH O nUH O Meo MeO oMe MeO oMg MeO omg MeO Mgo MeO leo MeO ohle MeO lleo MeO olllle MeO OMe MeO OM8 MeO OMo MeO OMB MeO OCH3 MeO OCHS MeO H3CO MeO OM4 MeO ocH MeO OM6 MeO M6O MeO OMR MeO OMoo MeO OmB MeO MoO MeO M*O MeO McoO MeO Ome MeO MgO MeO M8O MeO MBO MeO NC CN YC CN Nc CN cN CN nBU nBu neU nBu ngU nBu n8U nBu BU nBu Eto EtO oEt EtO Elo EtO oEl EtO ElO EtO OEl EtO OC2H EtO OCH2CH3 EtO CH3CH2O EtO olgU OiBu oleU OiBu OlBU OiBu npr iPr llpll iPr lpl iPr npl iPr lPl iPr nPl iPr tBU tBu llBU tBu lBU tBu CooH COOH HooC COOH Co2H COOH CO2H COOH HOOC COOH CO2n COOH co2H COOH CO2 COOH AC Ac pC Ac pc Ac ACo AcO opC AcO pcO AcO ACO AcO oCO AcO OoC AcO OpC AcO pCO AcO RCO AcO ORC AcO OnC AcO OAc AcO nCO AcO Rco AcO oRc AcO OAC AcO Bl Br el Br BC Br BF Br # Need to distinguish between a recognized label for methyl and # the default empty string for carbon CH3 Me H3C Me CH Me CH2 Me HC Me hle Me M8 Me MB Me MR Me Me Me H2C Me 3C Me pl Ar nl Ar oX Ox NoZ NO2 o2N NO2 No2 NO2 No NO2 O2N NO2 NOZ NO2 MO2 NO2 F3C CF3 CF CF3 FC CF3 Co CF3 F8l CF3 CFS CF3 FSC CF3 F3Co F3CN S3 S Se S lS S 8 S SH S HS S 5 S O2S SO2 lH H 1H H AcNH NHAc AcHN NHAc ACNH NHAc NHnC NHAc pCNH NHAc NHpC NHAc lCnuH NHAc NHAC NHAc OlHP THPO lHPO THPO lNpo THPO olHp THPO NlOHCH3 NOHCH3 HO3S SO3H so3H SO3H Ho3s SO3H SO3 SO3H SUn3 SO3H NMe MeN NHMe MeN NHMF MeN NHlME MeN RO OR oR OR Ro OR lHPO THPO OlHP THPO NCOlRlH3 N(OH)CH3 pZO BzO p2O BzO OBX BzO BZO BzO B2O BzO OB2 BzO OBz BzO OBZ BzO Blo BzO BZC BzO EBZO BzO CBZ BzO B2C BzO Sl Si CO2El CO2Et COOEl CO2Et COOEt CO2Et COOC2H CO2Et CO2CH2CH3 CO2Et COOCH2CH3 CO2Et CO2C2H5 CO2Et COEl CO2Et COHEl CO2Et COOMe CO2Me COOCH3 CO2Me CO2CH3 CO2Me HUn2C COOH CO2E CO2Et EO EtO HO2C COOH CUn2H COOH CnU2H COOH MeHN MeN n2N N El Et CH2CH3 Et CH3CH2 Et C2H5 Et H5C2 Et OBn BnO HNZ ZNH ZHN ZNH HNAm AmNH OAm AmO AmOOC AmO2C CO2Am AmO2C COOAm AmO2C SAm AmS HNBn BnNH BnN BnNH CO2Bn BnO2C BnOOC BnO2C COOBn BnO2C SnBu3 Bu3Sn HNBu BuNH OBu BuO CO2Bu BuO2C COOBu BuO2C BuOOC BuO2C SBu BuS Br3C CBr3 HNCbz CbzNH Cl3C CCl3 OCH CHO OHC CHO O2SCl ClSO2 SO2Cl ClSO2 MeO2C CO2Me OSO2Me MeO2SO BrOC COBr BuOC COBu F3COC COCF3 ClOC COCl OCOC COCO EtOC COEt FOC COF MeOC COMe H3COC COMe Et2NOC CONEt2 NH2OC CONH2 EtHNOC CONHEt MeHNOC CONHMe Me2NOC CONMe2 HSOC COSH NEt2 Et2N El2N Et2N NE2 Et2N E2N Et2N NEt3 Et3N HNEt EtNH SO2NH2 H2NSO2 H2NO2S H2NSO2 SO2N H2NSO2 HNOH HONH NMe2 Me2N MeNH MeN HNMe MeN MeOOC CO2Me OMs MsO OMS MsO OCN NCO SCN NCS AmHN NHAm BnHN NHBn BuHN NHBu EtHN NHEt HOHN NHOH PrHN NHPr ON NO Et2OP POEt2 Et3OP POEt3 Et2OOP POOEt2 HNPr PrNH EtS SEt SMe MeS SCH3 MeS Pll Ph Pl Ph ElO2C CO2Et EtOOC CO2Et ElOOC CO2Et OlOS OTos CH2CH CH2CH3 CHCH3 CH2CH3 H3CHC CH2CH3 H3CH2C CH2CH3 CCH3CH2l2N N(CH2CH3)2 NCCH2CH3l2 N(CH2CH3)2 CCH3CHl2N N(CH2CH3)2 NCCH2CH2CH3l2 N(CH2CH2CH3)2 CCCH3l3 C(CH3)3 CHCCH3l2 CH(CH3)2 OCH2CO2El OCH2CO2Et CBOCl2N BOC2N NHBOC BOCHN NBOC BOCHN NHCRZ NHCbz NClZ NHCbz F3CO OCF3 Cl3CO OCCl3 NSO2BU NHSO2BU NHSO2CH3 NHSO2Me ElOCHN EtO2CHN ElO2CHl EtO2CHN NHCOOEl NHCOOEt OEl2 OEt2 CH2OH HOCH2 NHCH NHCH3 NCH3 NHCH3 NO3S H4NO3S NOOC H4NOOC C3H C3H7 C2H C2H5 NNH2 NHNH2 H3CS MeS NHNHCOCH NHNHCOCH3 NNCOCH3 NHNHCOCH3 NHNHCOCF NHNHCOCF3 NNCOCF3 NHNHCOCF3 CO2CYSP CO2CysPr COCYSPl CO2CysPr CO2CYSPl CO2CysPr CF3CH CF3CH2 PPll2 PPh2 Pll2P PPh2 Ph2P PPh2 CO2M8 CO2Me OCH2Pll OCH2Ph PMoN PMBN lCO AcO XCO AcO OXC AcO CH3O MeO O3S SO3H NXeOH2C CH2OMe CH2ONXe CH2OMe CHOMe CH2OMe MeOHC CH2OMe CH3OCH2 CH2OMe CH2OCH3 CH2OMe N3Cl NH3Cl MeCHlN MeN NCHlMe MeN ElCHlN NHEt NCHlEl NHEt OCH2Pll OCH2Ph OCH2P OCH2Ph COOCH2P COOCH2Ph NeO MeO ONe MeO OCPh3 Ph3CO SO2CH3 SO2Me H3CO2S SO2Me CH3SO2 SO2Me POIOEII2 POOEt2 SO3NI SO3Na OSO2Me MsO CH2I5Bl (CH2)5Br ICH2I5Bl (CH2)5Br CH2I5 (CH2)5 TOS Tos PhO OPh PhS SPh PhHN NHPh Rl R1 Rlo R10 Rg R9 Rp R4 2 Z RlO R10 Y2 Y2 PMRN PMBN * Xx ** Xx *** Xx