data/alter-sequence-alignment-1.3.4/README.md:7: tranforming ==> transforming data/alter-sequence-alignment-1.3.4/alter-lib/src/main/java/es/uvigo/ei/sing/alter/cmdLine/CmdLineLogHandler.java:47: Sytem ==> System data/alter-sequence-alignment-1.3.4/alter-lib/src/main/java/es/uvigo/ei/sing/alter/gui/HelpPanel.java:63: tThe ==> the data/alter-sequence-alignment-1.3.4/alter-lib/src/main/java/es/uvigo/ei/sing/alter/gui/HelpPanel.java:66: evironment ==> environment data/alter-sequence-alignment-1.3.4/alter-lib/src/main/java/es/uvigo/ei/sing/alter/gui/HelpPanel.java:66: ommited ==> omitted data/alter-sequence-alignment-1.3.4/alter-lib/src/main/java/es/uvigo/ei/sing/alter/gui/MainFrame.java:181: Assing ==> Assign data/alter-sequence-alignment-1.3.4/alter-lib/src/main/java/es/uvigo/ei/sing/alter/gui/MainFrame.java:600: ALlignment ==> alignment data/alter-sequence-alignment-1.3.4/alter-lib/src/main/java/es/uvigo/ei/sing/alter/parser/ParseException.java:63: followng ==> following data/alter-sequence-alignment-1.3.4/alter-lib/src/main/java/es/uvigo/ei/sing/alter/parser/PhylipParser.java:404: concating ==> concatenating data/alter-sequence-alignment-1.3.4/alter-lib/src/main/java/es/uvigo/ei/sing/alter/reader/AlnReader.java:42: contructor ==> constructor data/alter-sequence-alignment-1.3.4/alter-lib/src/main/java/es/uvigo/ei/sing/alter/reader/AutodetectionReader.java:40: contructor ==> constructor data/alter-sequence-alignment-1.3.4/alter-lib/src/main/java/es/uvigo/ei/sing/alter/reader/FastaReader.java:41: contructor ==> constructor data/alter-sequence-alignment-1.3.4/alter-lib/src/main/java/es/uvigo/ei/sing/alter/reader/GdeReader.java:42: contructor ==> constructor data/alter-sequence-alignment-1.3.4/alter-lib/src/main/java/es/uvigo/ei/sing/alter/reader/MsfReader.java:44: contructor ==> constructor data/alter-sequence-alignment-1.3.4/alter-lib/src/main/java/es/uvigo/ei/sing/alter/reader/NexusReader.java:43: contructor ==> constructor data/alter-sequence-alignment-1.3.4/alter-lib/src/main/java/es/uvigo/ei/sing/alter/reader/PhylipReader.java:43: contructor ==> constructor data/alter-sequence-alignment-1.3.4/alter-lib/src/main/java/es/uvigo/ei/sing/alter/reader/PirReader.java:41: contructor ==> constructor data/alter-sequence-alignment-1.3.4/alter-lib/src/main/java/es/uvigo/ei/sing/alter/reader/ReaderUtils.java:41: caracter ==> character data/alter-sequence-alignment-1.3.4/alter-lib/src/main/java/es/uvigo/ei/sing/alter/types/Lengthable.java:22: attibute ==> attribute data/alter-sequence-alignment-1.3.4/alter-lib/src/main/java/es/uvigo/ei/sing/alter/types/Msf.java:82: Returs ==> Returns data/alter-sequence-alignment-1.3.4/alter-lib/src/main/java/es/uvigo/ei/sing/alter/types/RNA.java:21: tye ==> type, tie data/alter-sequence-alignment-1.3.4/alter-lib/src/main/java/es/uvigo/ei/sing/alter/writer/GdeWriter.java:140: othe ==> other data/alter-sequence-alignment-1.3.4/alter-lib/src/main/java/es/uvigo/ei/sing/alter/writer/NexusTCSWriter.java:50: caracters ==> characters data/alter-sequence-alignment-1.3.4/alter-lib/src/main/java/es/uvigo/ei/sing/alter/writer/NexusWriter.java:113: Intantiate ==> Instantiate data/alter-sequence-alignment-1.3.4/alter-lib/src/main/java/es/uvigo/ei/sing/alter/writer/NexusWriter.java:347: posible ==> possible data/alter-sequence-alignment-1.3.4/alter-lib/src/main/java/es/uvigo/ei/sing/alter/writer/PhylipTCSWriter.java:50: caracters ==> characters data/alter-sequence-alignment-1.3.4/alter-lib/src/main/java/es/uvigo/ei/sing/alter/writer/PhylipWriter.java:310: chracters ==> characters data/alter-sequence-alignment-1.3.4/alter-lib/src/main/java/es/uvigo/ei/sing/alter/writer/PirWriter.java:120: momento ==> memento data/alter-sequence-alignment-1.3.4/alter-lib/src/main/javacc/parser/PhylipParser.jj:152: concating ==> concatenating data/alter-sequence-alignment-1.3.4/alter-web/src/main/java/es/uvigo/ei/sing/alter/web/Controller.java:141: erros ==> errors data/alter-sequence-alignment-1.3.4/alter-web/src/main/resources/clustal.msf:258: ALLWS ==> ALLOWS data/alter-sequence-alignment-1.3.4/alter-web/src/main/resources/clustal.msf:467: SER ==> SET data/alter-sequence-alignment-1.3.4/alter-web/src/main/resources/tcoffee.msf:139: INLY ==> ONLY data/alter-sequence-alignment-1.3.4/alter-web/src/main/resources/tcoffee.msf:140: INLY ==> ONLY data/alter-sequence-alignment-1.3.4/alter-web/src/main/resources/tcoffee.msf:141: INLY ==> ONLY data/alter-sequence-alignment-1.3.4/alter-web/src/main/resources/tcoffee.msf:385: EDE ==> EDGE data/alter-sequence-alignment-1.3.4/alter-web/src/main/resources/tcoffee.msf:397: ND ==> AND, 2ND data/alter-sequence-alignment-1.3.4/alter-web/src/main/resources/tcoffee.msf:418: TE ==> THE, BE, WE data/alter-sequence-alignment-1.3.4/alter-web/src/main/resources/tcoffee.msf:420: TE ==> THE, BE, WE data/alter-sequence-alignment-1.3.4/alter-web/src/main/resources/tcoffee.msf:421: TE ==> THE, BE, WE data/alter-sequence-alignment-1.3.4/alter-web/src/main/resources/es/uvigo/ei/sing/alter/web/rest/REST.html:68: posible ==> possible data/alter-sequence-alignment-1.3.4/alter-web/src/main/resources/es/uvigo/ei/sing/alter/web/rest/REST.html:375: ouput ==> output data/alter-sequence-alignment-1.3.4/alter-web/src/main/resources/es/uvigo/ei/sing/alter/web/rest/form.html:24: submited ==> submitted data/alter-sequence-alignment-1.3.4/alter-web/src/main/resources/es/uvigo/ei/sing/alter/web/rest/form.html:24: bellow ==> below data/alter-sequence-alignment-1.3.4/alter-web/src/main/webapp/index.zul:49: readed ==> read, readd, readded data/alter-sequence-alignment-1.3.4/alter-web/src/main/webapp/index.zul:51: readed ==> read, readd, readded data/alter-sequence-alignment-1.3.4/alter-web/src/main/webapp/index.zul:52: readed ==> read, readd, readded data/alter-sequence-alignment-1.3.4/alter-web/src/main/webapp/index.zul:65: readed ==> read, readd, readded data/alter-sequence-alignment-1.3.4/alter-web/src/main/webapp/index.zul:67: readed ==> read, readd, readded data/alter-sequence-alignment-1.3.4/alter-web/src/main/webapp/index.zul:68: readed ==> read, readd, readded data/alter-sequence-alignment-1.3.4/.pc/update_doc.patch/README.md:7: tranforming ==> transforming