data/ampliconnoise-1.29/FCluster/FCluster.h:27: otu ==> out
data/ampliconnoise-1.29/Perseus/Perseus.h:167: ptD ==> pdf
data/ampliconnoise-1.29/Perseus/Perseus.c:435: nD ==> and, 2nd
data/ampliconnoise-1.29/Perseus/Perseus.c:632: nD ==> and, 2nd
data/ampliconnoise-1.29/Perseus/Perseus.c:635: nD ==> and, 2nd
data/ampliconnoise-1.29/Perseus/Perseus.c:642: nD ==> and, 2nd
data/ampliconnoise-1.29/Perseus/Perseus.c:648: nD ==> and, 2nd
data/ampliconnoise-1.29/Perseus/Perseus.c:651: nD ==> and, 2nd
data/ampliconnoise-1.29/Perseus/Perseus.c:658: nD ==> and, 2nd
data/ampliconnoise-1.29/Perseus/Perseus.c:1523: ptD ==> pdf
data/ampliconnoise-1.29/PerseusD/PerseusD.h:190: ptD ==> pdf
data/ampliconnoise-1.29/PerseusD/PerseusD.c:485: nD ==> and, 2nd
data/ampliconnoise-1.29/PerseusD/PerseusD.c:682: nD ==> and, 2nd
data/ampliconnoise-1.29/PerseusD/PerseusD.c:685: nD ==> and, 2nd
data/ampliconnoise-1.29/PerseusD/PerseusD.c:692: nD ==> and, 2nd
data/ampliconnoise-1.29/PerseusD/PerseusD.c:698: nD ==> and, 2nd
data/ampliconnoise-1.29/PerseusD/PerseusD.c:701: nD ==> and, 2nd
data/ampliconnoise-1.29/PerseusD/PerseusD.c:708: nD ==> and, 2nd
data/ampliconnoise-1.29/PerseusD/PerseusD.c:1533: ptD ==> pdf
data/ampliconnoise-1.29/PyroNoise/PyroNoise.c:361: recieve ==> receive
data/ampliconnoise-1.29/PyroNoise/PyroNoise.h:54: otu ==> out
data/ampliconnoise-1.29/PyroNoiseA/PyroNoiseA.c:386: recieve ==> receive
data/ampliconnoise-1.29/PyroNoiseA/PyroNoiseA.h:54: otu ==> out
data/ampliconnoise-1.29/PyroNoiseM/PyroNoiseM.c:387: recieve ==> receive
data/ampliconnoise-1.29/PyroNoiseM/PyroNoiseM.h:54: otu ==> out
data/ampliconnoise-1.29/Scripts/CleanBoth.pl:43: signalL ==> signal
data/ampliconnoise-1.29/Scripts/CleanBoth.pl:47: signalL ==> signal
data/ampliconnoise-1.29/Scripts/CleanBoth.pl:55: signalL ==> signal
data/ampliconnoise-1.29/Scripts/CSV.pl:84: OTU ==> OUT
data/ampliconnoise-1.29/Scripts/Qiime_OTU.pl:121: OTU ==> OUT
data/ampliconnoise-1.29/Scripts/Qiime_OTU.pl:122: OTU ==> OUT
data/ampliconnoise-1.29/Scripts/RunBoth.sh:202: otu ==> out
data/ampliconnoise-1.29/Scripts/RunBothFLX.sh:202: otu ==> out
data/ampliconnoise-1.29/Scripts/RunFLX.sh:197: otu ==> out
data/ampliconnoise-1.29/Scripts/RunTitanium.sh:198: otu ==> out
data/ampliconnoise-1.29/Scripts/RunTitaniumA.sh:198: otu ==> out
data/ampliconnoise-1.29/Scripts/RunTitaniumFast.sh:195: otu ==> out
data/ampliconnoise-1.29/Scripts/RunTitaniumWeb.sh:185: otu ==> out
data/ampliconnoise-1.29/SeqNoise/SeqNoise.c:324: recieve ==> receive
data/ampliconnoise-1.29/Test/Run.sh:21: otu ==> out
data/ampliconnoise-1.29/Test/Run.sh:36: otu ==> out
data/ampliconnoise-1.29/debian/changelog:110: decription ==> description
data/ampliconnoise-1.29/debian/tests/Run.sh:23: otu ==> out
data/ampliconnoise-1.29/debian/tests/Run.sh:38: otu ==> out
data/ampliconnoise-1.29/debian/tests/run-unit-test:29: otu ==> out
data/ampliconnoise-1.29/.pc/fix-path-for-data.patch/PyroNoiseM/PyroNoiseM.h:54: otu ==> out
data/ampliconnoise-1.29/.pc/fix-path-for-data.patch/PyroNoise/PyroNoise.h:54: otu ==> out
data/ampliconnoise-1.29/.pc/fix-path-for-data.patch/Perseus/Perseus.h:167: ptD ==> pdf
data/ampliconnoise-1.29/.pc/fix-segfault-on-non-fasta-input.patch/Perseus/Perseus.c:435: nD ==> and, 2nd
data/ampliconnoise-1.29/.pc/fix-segfault-on-non-fasta-input.patch/Perseus/Perseus.c:632: nD ==> and, 2nd
data/ampliconnoise-1.29/.pc/fix-segfault-on-non-fasta-input.patch/Perseus/Perseus.c:635: nD ==> and, 2nd
data/ampliconnoise-1.29/.pc/fix-segfault-on-non-fasta-input.patch/Perseus/Perseus.c:642: nD ==> and, 2nd
data/ampliconnoise-1.29/.pc/fix-segfault-on-non-fasta-input.patch/Perseus/Perseus.c:648: nD ==> and, 2nd
data/ampliconnoise-1.29/.pc/fix-segfault-on-non-fasta-input.patch/Perseus/Perseus.c:651: nD ==> and, 2nd
data/ampliconnoise-1.29/.pc/fix-segfault-on-non-fasta-input.patch/Perseus/Perseus.c:658: nD ==> and, 2nd
data/ampliconnoise-1.29/.pc/fix-segfault-on-non-fasta-input.patch/Perseus/Perseus.c:1507: ptD ==> pdf
data/ampliconnoise-1.29/.pc/fix-segfault-on-non-fasta-input.patch/PerseusD/PerseusD.c:485: nD ==> and, 2nd
data/ampliconnoise-1.29/.pc/fix-segfault-on-non-fasta-input.patch/PerseusD/PerseusD.c:682: nD ==> and, 2nd
data/ampliconnoise-1.29/.pc/fix-segfault-on-non-fasta-input.patch/PerseusD/PerseusD.c:685: nD ==> and, 2nd
data/ampliconnoise-1.29/.pc/fix-segfault-on-non-fasta-input.patch/PerseusD/PerseusD.c:692: nD ==> and, 2nd
data/ampliconnoise-1.29/.pc/fix-segfault-on-non-fasta-input.patch/PerseusD/PerseusD.c:698: nD ==> and, 2nd
data/ampliconnoise-1.29/.pc/fix-segfault-on-non-fasta-input.patch/PerseusD/PerseusD.c:701: nD ==> and, 2nd
data/ampliconnoise-1.29/.pc/fix-segfault-on-non-fasta-input.patch/PerseusD/PerseusD.c:708: nD ==> and, 2nd
data/ampliconnoise-1.29/.pc/fix-segfault-on-non-fasta-input.patch/PerseusD/PerseusD.c:1517: ptD ==> pdf
data/ampliconnoise-1.29/.pc/fix-segfault-on-non-fasta-input.patch/SeqNoise/SeqNoise.c:324: recieve ==> receive
data/ampliconnoise-1.29/.pc/mayhem.patch/Perseus/Perseus.c:435: nD ==> and, 2nd
data/ampliconnoise-1.29/.pc/mayhem.patch/Perseus/Perseus.c:632: nD ==> and, 2nd
data/ampliconnoise-1.29/.pc/mayhem.patch/Perseus/Perseus.c:635: nD ==> and, 2nd
data/ampliconnoise-1.29/.pc/mayhem.patch/Perseus/Perseus.c:642: nD ==> and, 2nd
data/ampliconnoise-1.29/.pc/mayhem.patch/Perseus/Perseus.c:648: nD ==> and, 2nd
data/ampliconnoise-1.29/.pc/mayhem.patch/Perseus/Perseus.c:651: nD ==> and, 2nd
data/ampliconnoise-1.29/.pc/mayhem.patch/Perseus/Perseus.c:658: nD ==> and, 2nd
data/ampliconnoise-1.29/.pc/mayhem.patch/Perseus/Perseus.c:1518: ptD ==> pdf
data/ampliconnoise-1.29/.pc/mayhem.patch/PerseusD/PerseusD.c:485: nD ==> and, 2nd
data/ampliconnoise-1.29/.pc/mayhem.patch/PerseusD/PerseusD.c:682: nD ==> and, 2nd
data/ampliconnoise-1.29/.pc/mayhem.patch/PerseusD/PerseusD.c:685: nD ==> and, 2nd
data/ampliconnoise-1.29/.pc/mayhem.patch/PerseusD/PerseusD.c:692: nD ==> and, 2nd
data/ampliconnoise-1.29/.pc/mayhem.patch/PerseusD/PerseusD.c:698: nD ==> and, 2nd
data/ampliconnoise-1.29/.pc/mayhem.patch/PerseusD/PerseusD.c:701: nD ==> and, 2nd
data/ampliconnoise-1.29/.pc/mayhem.patch/PerseusD/PerseusD.c:708: nD ==> and, 2nd
data/ampliconnoise-1.29/.pc/mayhem.patch/PerseusD/PerseusD.c:1528: ptD ==> pdf
data/ampliconnoise-1.29/.pc/mayhem.patch/SeqNoise/SeqNoise.c:324: recieve ==> receive