data/biojava-live-1.7.1/README:18: deperecated ==> deprecated
data/biojava-live-1.7.1/README:98: techical ==> technical
data/biojava-live-1.7.1/src/org/biojavax/SimpleNamespace.java:33: implemenation ==> implementation
data/biojava-live-1.7.1/src/org/biojavax/SimpleComment.java:30: implementaion ==> implementation
data/biojava-live-1.7.1/src/org/biojavax/bio/phylo/io/nexus/TreesBlock.java:398: characther ==> character
data/biojava-live-1.7.1/src/org/biojavax/bio/phylo/io/nexus/TreesBlock.java:576: separte ==> separate
data/biojava-live-1.7.1/src/org/biojavax/bio/phylo/io/nexus/NexusBlockParser.java:65: unparseable ==> unparsable
data/biojava-live-1.7.1/src/org/biojavax/bio/seq/SimpleRichFeature.java:673: fo ==> of, for
data/biojava-live-1.7.1/src/org/biojavax/bio/seq/SimpleRichFeature.java:675: fo ==> of, for
data/biojava-live-1.7.1/src/org/biojavax/bio/seq/SimpleRichFeature.java:675: fo ==> of, for
data/biojava-live-1.7.1/src/org/biojavax/bio/seq/SimpleRichFeature.java:677: fo ==> of, for
data/biojava-live-1.7.1/src/org/biojavax/bio/seq/SimpleRichFeature.java:678: fo ==> of, for
data/biojava-live-1.7.1/src/org/biojavax/bio/seq/SimpleRichFeature.java:679: fo ==> of, for
data/biojava-live-1.7.1/src/org/biojavax/bio/seq/CompoundRichLocation.java:276: wholey ==> wholly
data/biojava-live-1.7.1/src/org/biojavax/bio/seq/CompoundRichLocation.java:508: fo ==> of, for
data/biojava-live-1.7.1/src/org/biojavax/bio/seq/CompoundRichLocation.java:509: fo ==> of, for
data/biojava-live-1.7.1/src/org/biojavax/bio/seq/CompoundRichLocation.java:512: fo ==> of, for
data/biojava-live-1.7.1/src/org/biojavax/bio/seq/SimpleRichLocation.java:663: fo ==> of, for
data/biojava-live-1.7.1/src/org/biojavax/bio/seq/SimpleRichLocation.java:664: fo ==> of, for
data/biojava-live-1.7.1/src/org/biojavax/bio/seq/SimpleRichLocation.java:665: fo ==> of, for
data/biojava-live-1.7.1/src/org/biojavax/bio/seq/SimpleRichLocation.java:666: fo ==> of, for
data/biojava-live-1.7.1/src/org/biojavax/bio/seq/SimpleRichLocation.java:669: fo ==> of, for
data/biojava-live-1.7.1/src/org/biojavax/bio/seq/SimpleRichLocation.java:670: fo ==> of, for
data/biojava-live-1.7.1/src/org/biojavax/bio/seq/SimpleRichLocation.java:671: fo ==> of, for
data/biojava-live-1.7.1/src/org/biojavax/bio/seq/SimpleRichLocation.java:672: fo ==> of, for
data/biojava-live-1.7.1/src/org/biojavax/bio/seq/SimpleRichLocation.java:673: fo ==> of, for
data/biojava-live-1.7.1/src/org/biojavax/bio/seq/SimpleRichLocation.java:674: fo ==> of, for
data/biojava-live-1.7.1/src/org/biojavax/bio/seq/SimpleRichLocation.java:677: fo ==> of, for
data/biojava-live-1.7.1/src/org/biojavax/bio/seq/SimpleRichLocation.java:692: fo ==> of, for
data/biojava-live-1.7.1/src/org/biojavax/bio/seq/SimpleRichLocation.java:693: fo ==> of, for
data/biojava-live-1.7.1/src/org/biojavax/bio/seq/SimpleRichLocation.java:694: fo ==> of, for
data/biojava-live-1.7.1/src/org/biojavax/bio/seq/SimpleRichLocation.java:695: fo ==> of, for
data/biojava-live-1.7.1/src/org/biojavax/bio/seq/SimpleRichLocation.java:696: fo ==> of, for
data/biojava-live-1.7.1/src/org/biojavax/bio/seq/SimpleRichLocation.java:699: fo ==> of, for
data/biojava-live-1.7.1/src/org/biojavax/bio/seq/SimpleRichLocation.java:699: fo ==> of, for
data/biojava-live-1.7.1/src/org/biojavax/bio/seq/SimpleRichLocation.java:700: fo ==> of, for
data/biojava-live-1.7.1/src/org/biojavax/bio/seq/SimpleRichLocation.java:701: fo ==> of, for
data/biojava-live-1.7.1/src/org/biojavax/bio/seq/SimpleRichLocation.java:701: fo ==> of, for
data/biojava-live-1.7.1/src/org/biojavax/bio/seq/SimpleRichLocation.java:701: fo ==> of, for
data/biojava-live-1.7.1/src/org/biojavax/bio/seq/SimpleRichLocation.java:704: fo ==> of, for
data/biojava-live-1.7.1/src/org/biojavax/bio/seq/RichFeatureRelationshipHolder.java:55: feautre ==> feature
data/biojava-live-1.7.1/src/org/biojavax/bio/seq/RichLocation.java:338: fo ==> of, for
data/biojava-live-1.7.1/src/org/biojavax/bio/seq/RichLocation.java:339: fo ==> of, for
data/biojava-live-1.7.1/src/org/biojavax/bio/seq/RichLocation.java:340: fo ==> of, for
data/biojava-live-1.7.1/src/org/biojavax/bio/seq/RichLocation.java:341: fo ==> of, for
data/biojava-live-1.7.1/src/org/biojavax/bio/seq/io/RichSeqIOListener.java:140: Commment ==> Comment
data/biojava-live-1.7.1/src/org/biojavax/bio/seq/io/RichSeqIOListener.java:183: persited ==> persisted
data/biojava-live-1.7.1/src/org/biojavax/bio/seq/io/RichStreamReader.java:43: seperated ==> separated
data/biojava-live-1.7.1/src/org/biojavax/bio/seq/io/RichSequenceFormat.java:148: Retrive ==> Retrieve
data/biojava-live-1.7.1/src/org/biojavax/bio/seq/io/GenbankFormat.java:814: aCount ==> account
data/biojava-live-1.7.1/src/org/biojavax/bio/seq/io/GenbankFormat.java:828: aCount ==> account
data/biojava-live-1.7.1/src/org/biojavax/bio/seq/io/GenbankFormat.java:845: aCount ==> account
data/biojava-live-1.7.1/src/org/biojavax/bio/seq/io/EMBLFormat.java:1055: aCount ==> account
data/biojava-live-1.7.1/src/org/biojavax/bio/seq/io/EMBLFormat.java:1069: aCount ==> account
data/biojava-live-1.7.1/src/org/biojavax/bio/seq/io/EMBLFormat.java:1085: aCount ==> account
data/biojava-live-1.7.1/src/org/biojavax/bio/seq/io/UniProtXMLFormat.java:1180: acccount ==> account
data/biojava-live-1.7.1/src/org/biojavax/bio/seq/io/UniProtXMLFormat.java:1186: acccount ==> account
data/biojava-live-1.7.1/src/org/biojavax/bio/seq/io/UniProtXMLFormat.java:1292: acccount ==> account
data/biojava-live-1.7.1/src/org/biojavax/bio/seq/io/UniProtXMLFormat.java:1330: acccount ==> account
data/biojava-live-1.7.1/src/org/biojavax/bio/db/RichSequenceDBLite.java:78: uniqe ==> unique
data/biojava-live-1.7.1/src/org/biojavax/bio/db/BioEntryDBLite.java:98: uniqe ==> unique
data/biojava-live-1.7.1/src/org/biojavax/bio/db/biosql/BioSQLRichSequenceDB.java:105: critera ==> criteria
data/biojava-live-1.7.1/src/org/biojavax/ga/GAStoppingCriteria.java:58: Constructer ==> Constructor
data/biojava-live-1.7.1/src/org/biojavax/ga/Population.java:116: retreive ==> retrieve
data/biojava-live-1.7.1/src/org/biojavax/ga/GeneticAlgorithm.java:139: saftey ==> safety
data/biojava-live-1.7.1/src/org/biojavax/ga/Organism.java:36: mutliple ==> multiple
data/biojava-live-1.7.1/src/org/biojavax/ga/Organism.java:65: unchangable ==> unchangeable
data/biojava-live-1.7.1/src/org/biojavax/ga/util/GATools.java:107: toke ==> took
data/biojava-live-1.7.1/src/org/biojavax/ga/util/GATools.java:109: toke ==> took
data/biojava-live-1.7.1/src/org/biojavax/ga/util/GATools.java:116: toke ==> took
data/biojava-live-1.7.1/src/org/biojavax/ga/util/GATools.java:127: infact ==> in fact
data/biojava-live-1.7.1/src/org/biojavax/ga/impl/SimpleGeneticAlgorithm.java:32: overidden ==> overridden
data/biojava-live-1.7.1/src/org/biojavax/ga/impl/SimpleGeneticAlgorithm.java:33: overide ==> override
data/biojava-live-1.7.1/src/org/biojavax/ga/functions/SwapMutationFunction.java:57: legth ==> length
data/biojava-live-1.7.1/src/org/biojavax/ga/functions/SwapMutationFunction.java:65: choosen ==> chosen
data/biojava-live-1.7.1/src/org/biojavax/ga/functions/SwapMutationFunction.java:85: allways ==> always
data/biojava-live-1.7.1/src/org/biojavax/ga/functions/TournamentSelection.java:102: choosen ==> chosen
data/biojava-live-1.7.1/src/org/biojavax/ga/functions/CrossOverFunction.java:38: retreive ==> retrieve
data/biojava-live-1.7.1/src/org/biojavax/ga/functions/CrossOverFunction.java:80: occuring ==> occurring
data/biojava-live-1.7.1/src/org/biojavax/ga/functions/CrossOverFunction.java:90: occuring ==> occurring
data/biojava-live-1.7.1/src/org/biojavax/ga/functions/MutationFunction.java:73: occuring ==> occurring
data/biojava-live-1.7.1/src/org/biojavax/ga/functions/OrderCrossover.java:49: teh ==> the
data/biojava-live-1.7.1/src/org/biojavax/ga/functions/OrderCrossover.java:207: lenghth ==> length
data/biojava-live-1.7.1/src/org/biojavax/ga/functions/OrderCrossover.java:216: choosen ==> chosen
data/biojava-live-1.7.1/src/org/biojavax/ga/functions/OrderCrossover.java:236: allways ==> always
data/biojava-live-1.7.1/src/org/biojava/bio/BioError.java:26: Coppied ==> Copied
data/biojava-live-1.7.1/src/org/biojava/bio/BioError.java:43: handeling ==> handling
data/biojava-live-1.7.1/src/org/biojava/bio/AnnotationTools.java:184: seccond ==> second
data/biojava-live-1.7.1/src/org/biojava/bio/AnnotationTools.java:223: realy ==> really
data/biojava-live-1.7.1/src/org/biojava/bio/AnnotationTools.java:228: seccond ==> second
data/biojava-live-1.7.1/src/org/biojava/bio/AnnotationTools.java:332: realy ==> really
data/biojava-live-1.7.1/src/org/biojava/bio/AnnotationTools.java:332: usefull ==> useful
data/biojava-live-1.7.1/src/org/biojava/bio/AnnotationTools.java:336: seccond ==> second
data/biojava-live-1.7.1/src/org/biojava/bio/AnnotationTools.java:448: seccond ==> second
data/biojava-live-1.7.1/src/org/biojava/bio/AnnotationTools.java:523: seccond ==> second
data/biojava-live-1.7.1/src/org/biojava/bio/AbstractAnnotation.java:195: independant ==> independent
data/biojava-live-1.7.1/src/org/biojava/bio/AbstractAnnotation.java:225: independant ==> independent
data/biojava-live-1.7.1/src/org/biojava/bio/AbstractAnnotation.java:232: empy ==> empty
data/biojava-live-1.7.1/src/org/biojava/bio/EcNumber.java:31: usefull ==> useful
data/biojava-live-1.7.1/src/org/biojava/bio/PropertyConstraint.java:44: hierachy ==> hierarchy
data/biojava-live-1.7.1/src/org/biojava/bio/PropertyConstraint.java:47: hierachy ==> hierarchy
data/biojava-live-1.7.1/src/org/biojava/bio/PropertyConstraint.java:81: neccesarily ==> necessarily
data/biojava-live-1.7.1/src/org/biojava/bio/PropertyConstraint.java:113: dissalow ==> disallow
data/biojava-live-1.7.1/src/org/biojava/bio/PropertyConstraint.java:126: respecitvely ==> respectively
data/biojava-live-1.7.1/src/org/biojava/bio/PropertyConstraint.java:184: optinal ==> optional
data/biojava-live-1.7.1/src/org/biojava/bio/PropertyConstraint.java:240: usefull ==> useful
data/biojava-live-1.7.1/src/org/biojava/bio/PropertyConstraint.java:387: seccond ==> second
data/biojava-live-1.7.1/src/org/biojava/bio/PropertyConstraint.java:405: seccond ==> second
data/biojava-live-1.7.1/src/org/biojava/bio/PropertyConstraint.java:407: seccond ==> second
data/biojava-live-1.7.1/src/org/biojava/bio/PropertyConstraint.java:445: seccond ==> second
data/biojava-live-1.7.1/src/org/biojava/bio/PropertyConstraint.java:463: seccond ==> second
data/biojava-live-1.7.1/src/org/biojava/bio/PropertyConstraint.java:465: seccond ==> second
data/biojava-live-1.7.1/src/org/biojava/bio/BeanAsAnnotation.java:31: partialy ==> partially
data/biojava-live-1.7.1/src/org/biojava/bio/BioRuntimeException.java:33: Occasionaly ==> Occasionally
data/biojava-live-1.7.1/src/org/biojava/bio/BioRuntimeException.java:42: Occasionaly ==> Occasionally
data/biojava-live-1.7.1/src/org/biojava/bio/BioRuntimeException.java:43: arround ==> around
data/biojava-live-1.7.1/src/org/biojava/bio/SmallAnnotation.java:69: annoation ==> annotation
data/biojava-live-1.7.1/src/org/biojava/bio/SmallAnnotation.java:71: Annoation ==> Annotation
data/biojava-live-1.7.1/src/org/biojava/bio/CardinalityConstraint.java:32: Usefull ==> Useful
data/biojava-live-1.7.1/src/org/biojava/bio/package.html:17: hierachy ==> hierarchy
data/biojava-live-1.7.1/src/org/biojava/bio/package.html:27: untill ==> until
data/biojava-live-1.7.1/src/org/biojava/bio/package.html:45: dynamicaly ==> dynamically
data/biojava-live-1.7.1/src/org/biojava/bio/package.html:68: hierachies ==> hierarchies
data/biojava-live-1.7.1/src/org/biojava/bio/AnnotationType.java:61: potentialy ==> potentially
data/biojava-live-1.7.1/src/org/biojava/bio/AnnotationType.java:116: optionaly ==> optionally
data/biojava-live-1.7.1/src/org/biojava/bio/AnnotationType.java:117: usualy ==> usually
data/biojava-live-1.7.1/src/org/biojava/bio/AnnotationType.java:149: deffinition ==> definition
data/biojava-live-1.7.1/src/org/biojava/bio/AnnotationType.java:219: propery ==> property, properly
data/biojava-live-1.7.1/src/org/biojava/bio/AnnotationType.java:295: explicity ==> explicitly
data/biojava-live-1.7.1/src/org/biojava/bio/AnnotationType.java:305: neccisary ==> necessary
data/biojava-live-1.7.1/src/org/biojava/bio/AnnotationType.java:336: neccisary ==> necessary
data/biojava-live-1.7.1/src/org/biojava/bio/CollectionConstraint.java:67: neccesarily ==> necessarily
data/biojava-live-1.7.1/src/org/biojava/bio/CollectionConstraint.java:79: Usefull ==> Useful
data/biojava-live-1.7.1/src/org/biojava/bio/CollectionConstraint.java:152: vaild ==> valid
data/biojava-live-1.7.1/src/org/biojava/bio/CollectionConstraint.java:436: seccond ==> second
data/biojava-live-1.7.1/src/org/biojava/bio/CollectionConstraint.java:454: seccond ==> second
data/biojava-live-1.7.1/src/org/biojava/bio/CollectionConstraint.java:456: seccond ==> second
data/biojava-live-1.7.1/src/org/biojava/bio/CollectionConstraint.java:503: seccond ==> second
data/biojava-live-1.7.1/src/org/biojava/bio/CollectionConstraint.java:520: seccond ==> second
data/biojava-live-1.7.1/src/org/biojava/bio/CollectionConstraint.java:522: seccond ==> second
data/biojava-live-1.7.1/src/org/biojava/bio/SimpleAnnotation.java:81: independant ==> independent
data/biojava-live-1.7.1/src/org/biojava/bio/annodb/MergingAnnotationDB.java:63: independantly ==> independently
data/biojava-live-1.7.1/src/org/biojava/bio/annodb/AnnotationDB.java:42: usefull ==> useful
data/biojava-live-1.7.1/src/org/biojava/bio/annodb/AnnotationDB.java:78: irregardless ==> regardless
data/biojava-live-1.7.1/src/org/biojava/bio/annodb/IndexedAnnotationDB.java:103: persistance ==> persistence
data/biojava-live-1.7.1/src/org/biojava/bio/annodb/IndexedAnnotationDB.java:144: initalise ==> initialise
data/biojava-live-1.7.1/src/org/biojava/bio/taxa/Taxon.java:116: dynamicaly ==> dynamically
data/biojava-live-1.7.1/src/org/biojava/bio/taxa/Taxon.java:130: hierachies ==> hierarchies
data/biojava-live-1.7.1/src/org/biojava/bio/taxa/TaxonFactory.java:45: compatable ==> compatible
data/biojava-live-1.7.1/src/org/biojava/bio/taxa/TaxonFactory.java:65: propper ==> proper
data/biojava-live-1.7.1/src/org/biojava/bio/taxa/TaxonFactory.java:89: compatable ==> compatible
data/biojava-live-1.7.1/src/org/biojava/bio/taxa/TaxonFactory.java:95: actualy ==> actually
data/biojava-live-1.7.1/src/org/biojava/bio/taxa/TaxonFactory.java:108: compatable ==> compatible
data/biojava-live-1.7.1/src/org/biojava/bio/taxa/TaxonFactory.java:108: sucessful ==> successful
data/biojava-live-1.7.1/src/org/biojava/bio/taxa/package.html:8: actualy ==> actually
data/biojava-live-1.7.1/src/org/biojava/bio/taxa/package.html:10: potentialy ==> potentially
data/biojava-live-1.7.1/src/org/biojava/bio/taxa/AbstractTaxon.java:37: impementor ==> implementer
data/biojava-live-1.7.1/src/org/biojava/bio/taxa/SimpleTaxon.java:27: implementatation ==> implementation
data/biojava-live-1.7.1/src/org/biojava/bio/alignment/UnequalLengthAlignment.java:52: Waring ==> Warning
data/biojava-live-1.7.1/src/org/biojava/bio/alignment/AbstractULAlignment.java:26: Waring ==> Warning
data/biojava-live-1.7.1/src/org/biojava/bio/alignment/AbstractULAlignment.java:174: Retreives ==> Retrieves
data/biojava-live-1.7.1/src/org/biojava/bio/alignment/AbstractULAlignment.java:311: aligment ==> alignment
data/biojava-live-1.7.1/src/org/biojava/bio/alignment/EditableAlignment.java:52: Waring ==> Warning
data/biojava-live-1.7.1/src/org/biojava/bio/alignment/SmithWaterman.java:254: penalities ==> penalties
data/biojava-live-1.7.1/src/org/biojava/bio/alignment/SmithWaterman.java:328: penalities ==> penalties
data/biojava-live-1.7.1/src/org/biojava/bio/alignment/SmithWaterman.java:401: missmatch ==> mismatch
data/biojava-live-1.7.1/src/org/biojava/bio/alignment/ARAlignment.java:34: Waring ==> Warning
data/biojava-live-1.7.1/src/org/biojava/bio/alignment/IllegalAlignmentEditException.java:67: Waring ==> Warning
data/biojava-live-1.7.1/src/org/biojava/bio/alignment/AlignmentElement.java:35: Waring ==> Warning
data/biojava-live-1.7.1/src/org/biojava/bio/alignment/FlexibleAlignment.java:61: Waring ==> Warning
data/biojava-live-1.7.1/src/org/biojava/bio/alignment/FlexibleAlignment.java:446: begining ==> beginning
data/biojava-live-1.7.1/src/org/biojava/bio/alignment/FlexibleAlignment.java:522: postion ==> position
data/biojava-live-1.7.1/src/org/biojava/bio/alignment/SubstitutionMatrix.java:268: Unknow ==> Unknown
data/biojava-live-1.7.1/src/org/biojava/bio/alignment/QualitativeAlignment.java:27: Waring ==> Warning
data/biojava-live-1.7.1/src/org/biojava/bio/alignment/NeedlemanWunsch.java:614: missmatch ==> mismatch
data/biojava-live-1.7.1/src/org/biojava/bio/alignment/NeedlemanWunsch.java:636: missmatch ==> mismatch
data/biojava-live-1.7.1/src/org/biojava/bio/alignment/NeedlemanWunsch.java:636: occured ==> occurred
data/biojava-live-1.7.1/src/org/biojava/bio/alignment/SimpleAlignmentElement.java:34: Waring ==> Warning
data/biojava-live-1.7.1/src/org/biojava/bio/alignment/SequenceAlignment.java:83: formated ==> formatted
data/biojava-live-1.7.1/src/org/biojava/bio/alignment/SequenceAlignment.java:118: formated ==> formatted
data/biojava-live-1.7.1/src/org/biojava/bio/seq/NucleotideTools.java:380: accross ==> across
data/biojava-live-1.7.1/src/org/biojava/bio/seq/NucleotideTools.java:442: accross ==> across
data/biojava-live-1.7.1/src/org/biojava/bio/seq/OptimizableFilter.java:25: potentialy ==> potentially
data/biojava-live-1.7.1/src/org/biojava/bio/seq/SequenceTools.java:66: co-ordinate ==> coordinate
data/biojava-live-1.7.1/src/org/biojava/bio/seq/SequenceTools.java:89: co-ordinate ==> coordinate
data/biojava-live-1.7.1/src/org/biojava/bio/seq/SequenceTools.java:155: independantly ==> independently
data/biojava-live-1.7.1/src/org/biojava/bio/seq/SequenceTools.java:167: independantly ==> independently
data/biojava-live-1.7.1/src/org/biojava/bio/seq/SequenceTools.java:238: requres ==> requires
data/biojava-live-1.7.1/src/org/biojava/bio/seq/SequenceTools.java:241: usefull ==> useful
data/biojava-live-1.7.1/src/org/biojava/bio/seq/RemoteFeature.java:38: Seqeunce ==> Sequence
data/biojava-live-1.7.1/src/org/biojava/bio/seq/RemoteFeature.java:135: Seqence ==> Sequence
data/biojava-live-1.7.1/src/org/biojava/bio/seq/SequenceFactory.java:30: potentialy ==> potentially
data/biojava-live-1.7.1/src/org/biojava/bio/seq/ProteinTools.java:560: ser ==> set
data/biojava-live-1.7.1/src/org/biojava/bio/seq/ProteinTools.java:569: ser ==> set
data/biojava-live-1.7.1/src/org/biojava/bio/seq/FeatureTypes.java:126: attemt ==> attempt
data/biojava-live-1.7.1/src/org/biojava/bio/seq/FeatureTypes.java:228: hierachy ==> hierarchy
data/biojava-live-1.7.1/src/org/biojava/bio/seq/FeatureTypes.java:229: fitler ==> filter
data/biojava-live-1.7.1/src/org/biojava/bio/seq/FeatureTypes.java:231: actualy ==> actually
data/biojava-live-1.7.1/src/org/biojava/bio/seq/SimpleFeatureRealizer.java:73: precendence ==> precedence
data/biojava-live-1.7.1/src/org/biojava/bio/seq/package.html:24: preceeded ==> preceded, proceeded
data/biojava-live-1.7.1/src/org/biojava/bio/seq/FeatureFilter.java:985: assosiated ==> associated
data/biojava-live-1.7.1/src/org/biojava/bio/seq/DNATools.java:255: accross ==> across
data/biojava-live-1.7.1/src/org/biojava/bio/seq/DNATools.java:284: accross ==> across
data/biojava-live-1.7.1/src/org/biojava/bio/seq/DNATools.java:346: toke ==> took
data/biojava-live-1.7.1/src/org/biojava/bio/seq/DNATools.java:348: toke ==> took
data/biojava-live-1.7.1/src/org/biojava/bio/seq/DNATools.java:352: toke ==> took
data/biojava-live-1.7.1/src/org/biojava/bio/seq/DNATools.java:381: origninal ==> original
data/biojava-live-1.7.1/src/org/biojava/bio/seq/CircularView.java:91: nescessary ==> necessary
data/biojava-live-1.7.1/src/org/biojava/bio/seq/CircularView.java:145: nescessary ==> necessary
data/biojava-live-1.7.1/src/org/biojava/bio/seq/FilterUtils.java:50: instanciated ==> instantiated
data/biojava-live-1.7.1/src/org/biojava/bio/seq/FilterUtils.java:257: howerver ==> however
data/biojava-live-1.7.1/src/org/biojava/bio/seq/FilterUtils.java:504: decendant ==> descendant
data/biojava-live-1.7.1/src/org/biojava/bio/seq/FilterUtils.java:522: decendants ==> descendants
data/biojava-live-1.7.1/src/org/biojava/bio/seq/FilterUtils.java:597: attept ==> attempt
data/biojava-live-1.7.1/src/org/biojava/bio/seq/FilterUtils.java:598: propogate ==> propagate
data/biojava-live-1.7.1/src/org/biojava/bio/seq/FilterUtils.java:1068: seccond ==> second
data/biojava-live-1.7.1/src/org/biojava/bio/seq/RNATools.java:228: accross ==> across
data/biojava-live-1.7.1/src/org/biojava/bio/seq/RNATools.java:287: toke ==> took
data/biojava-live-1.7.1/src/org/biojava/bio/seq/RNATools.java:290: toke ==> took
data/biojava-live-1.7.1/src/org/biojava/bio/seq/RNATools.java:294: toke ==> took
data/biojava-live-1.7.1/src/org/biojava/bio/seq/RNATools.java:496: te ==> the, be, we
data/biojava-live-1.7.1/src/org/biojava/bio/seq/RNATools.java:497: te ==> the, be, we
data/biojava-live-1.7.1/src/org/biojava/bio/seq/RNATools.java:498: te ==> the, be, we
data/biojava-live-1.7.1/src/org/biojava/bio/seq/RNATools.java:499: te ==> the, be, we
data/biojava-live-1.7.1/src/org/biojava/bio/seq/RNATools.java:504: te ==> the, be, we
data/biojava-live-1.7.1/src/org/biojava/bio/seq/RNATools.java:505: te ==> the, be, we
data/biojava-live-1.7.1/src/org/biojava/bio/seq/RNATools.java:518: fromS ==> forms
data/biojava-live-1.7.1/src/org/biojava/bio/seq/RNATools.java:519: fromS ==> forms
data/biojava-live-1.7.1/src/org/biojava/bio/seq/RNATools.java:521: fromS ==> forms
data/biojava-live-1.7.1/src/org/biojava/bio/seq/Feature.java:64: hierachy ==> hierarchy
data/biojava-live-1.7.1/src/org/biojava/bio/seq/homol/SimilarityPairFeature.java:46: analagous ==> analogous
data/biojava-live-1.7.1/src/org/biojava/bio/seq/io/StreamWriter.java:40: prefered ==> preferred
data/biojava-live-1.7.1/src/org/biojava/bio/seq/io/AbstractGenEmblFileFormer.java:114: aCount ==> account
data/biojava-live-1.7.1/src/org/biojava/bio/seq/io/AbstractGenEmblFileFormer.java:334: delimeter ==> delimiter
data/biojava-live-1.7.1/src/org/biojava/bio/seq/io/AbstractGenEmblFileFormer.java:885: parantheses ==> parentheses
data/biojava-live-1.7.1/src/org/biojava/bio/seq/io/ReferenceAnnotation.java:47: epty ==> empty
data/biojava-live-1.7.1/src/org/biojava/bio/seq/io/EmblLikeFormat.java:318: implemention ==> implementation
data/biojava-live-1.7.1/src/org/biojava/bio/seq/io/SeqIOListener.java:72: guarenteed ==> guaranteed
data/biojava-live-1.7.1/src/org/biojava/bio/seq/io/GenbankFileFormer.java:149: aCount ==> account
data/biojava-live-1.7.1/src/org/biojava/bio/seq/io/GenbankFileFormer.java:164: aCount ==> account
data/biojava-live-1.7.1/src/org/biojava/bio/seq/io/GenbankFileFormer.java:212: aCount ==> account
data/biojava-live-1.7.1/src/org/biojava/bio/seq/io/GenbankFileFormer.java:538: compatable ==> compatible
data/biojava-live-1.7.1/src/org/biojava/bio/seq/io/SwissprotProcessor.java:176: toke ==> took
data/biojava-live-1.7.1/src/org/biojava/bio/seq/io/SwissprotProcessor.java:177: toke ==> took
data/biojava-live-1.7.1/src/org/biojava/bio/seq/io/SwissprotProcessor.java:179: toke ==> took
data/biojava-live-1.7.1/src/org/biojava/bio/seq/io/SeqIOTools.java:322: containg ==> containing
data/biojava-live-1.7.1/src/org/biojava/bio/seq/io/SeqIOTools.java:754: inherantly ==> inherently
data/biojava-live-1.7.1/src/org/biojava/bio/seq/io/SeqIOTools.java:957: Aligment ==> Alignment
data/biojava-live-1.7.1/src/org/biojava/bio/seq/io/SequenceBuilderFilter.java:40: recieve ==> receive
data/biojava-live-1.7.1/src/org/biojava/bio/seq/io/GenbankFormat.java:164: implemention ==> implementation
data/biojava-live-1.7.1/src/org/biojava/bio/seq/io/SwissprotFeatureTableParser.java:47: dependancy ==> dependency
data/biojava-live-1.7.1/src/org/biojava/bio/seq/io/ParseException.java:59: occured ==> occurred
data/biojava-live-1.7.1/src/org/biojava/bio/seq/io/SeqIOFilter.java:38: recieve ==> receive
data/biojava-live-1.7.1/src/org/biojava/bio/seq/io/EmblLikeLocationParser.java:67: classs ==> class
data/biojava-live-1.7.1/src/org/biojava/bio/seq/io/EmblLikeLocationParser.java:151: toke ==> took
data/biojava-live-1.7.1/src/org/biojava/bio/seq/io/EmblLikeLocationParser.java:152: toke ==> took
data/biojava-live-1.7.1/src/org/biojava/bio/seq/io/EmblLikeLocationParser.java:171: toke ==> took
data/biojava-live-1.7.1/src/org/biojava/bio/seq/io/EmblLikeLocationParser.java:173: toke ==> took
data/biojava-live-1.7.1/src/org/biojava/bio/seq/io/EmblLikeLocationParser.java:218: toke ==> took
data/biojava-live-1.7.1/src/org/biojava/bio/seq/io/SmartSequenceBuilder.java:46: prefered ==> preferred
data/biojava-live-1.7.1/src/org/biojava/bio/seq/io/AlternateTokenization.java:43: intented ==> intended, indented
data/biojava-live-1.7.1/src/org/biojava/bio/seq/io/EmblProcessor.java:180: toke ==> took
data/biojava-live-1.7.1/src/org/biojava/bio/seq/io/EmblProcessor.java:181: toke ==> took
data/biojava-live-1.7.1/src/org/biojava/bio/seq/io/EmblProcessor.java:183: toke ==> took
data/biojava-live-1.7.1/src/org/biojava/bio/seq/io/EmblProcessor.java:187: toke ==> took
data/biojava-live-1.7.1/src/org/biojava/bio/seq/io/EmblProcessor.java:188: toke ==> took
data/biojava-live-1.7.1/src/org/biojava/bio/seq/io/SequenceFormat.java:46: prefered ==> preferred
data/biojava-live-1.7.1/src/org/biojava/bio/seq/io/SequenceFormat.java:97: implemention ==> implementation
data/biojava-live-1.7.1/src/org/biojava/bio/seq/io/EmblFileFormer.java:135: aCount ==> account
data/biojava-live-1.7.1/src/org/biojava/bio/seq/io/EmblFileFormer.java:164: aCount ==> account
data/biojava-live-1.7.1/src/org/biojava/bio/seq/io/EmblFileFormer.java:179: aCount ==> account
data/biojava-live-1.7.1/src/org/biojava/bio/seq/io/SwissprotFileFormer.java:196: formated ==> formatted
data/biojava-live-1.7.1/src/org/biojava/bio/seq/io/SwissprotFileFormer.java:440: seperately ==> separately
data/biojava-live-1.7.1/src/org/biojava/bio/seq/io/SwissprotFileFormer.java:575: Ammount ==> Amount
data/biojava-live-1.7.1/src/org/biojava/bio/seq/io/SymbolReader.java:52: occured ==> occurred
data/biojava-live-1.7.1/src/org/biojava/bio/seq/io/SymbolReader.java:54: occured ==> occurred
data/biojava-live-1.7.1/src/org/biojava/bio/seq/io/SymbolReader.java:68: occured ==> occurred
data/biojava-live-1.7.1/src/org/biojava/bio/seq/io/SymbolReader.java:70: occured ==> occurred
data/biojava-live-1.7.1/src/org/biojava/bio/seq/io/FastaFormat.java:81: Retrive ==> Retrieve
data/biojava-live-1.7.1/src/org/biojava/bio/seq/io/FastaFormat.java:106: seqeunce ==> sequence
data/biojava-live-1.7.1/src/org/biojava/bio/seq/io/FastaFormat.java:269: implemention ==> implementation
data/biojava-live-1.7.1/src/org/biojava/bio/seq/io/SimpleSequenceBuilder.java:43: prefered ==> preferred
data/biojava-live-1.7.1/src/org/biojava/bio/seq/io/ChunkedSymbolListFactory.java:104: inherantly ==> inherently
data/biojava-live-1.7.1/src/org/biojava/bio/seq/io/ChunkedSymbolListFactory.java:280: reencode ==> re-encode
data/biojava-live-1.7.1/src/org/biojava/bio/seq/io/FastaDescriptionLineParser.java:65: toke ==> took
data/biojava-live-1.7.1/src/org/biojava/bio/seq/io/FastaDescriptionLineParser.java:66: toke ==> took
data/biojava-live-1.7.1/src/org/biojava/bio/seq/io/FastaDescriptionLineParser.java:69: toke ==> took
data/biojava-live-1.7.1/src/org/biojava/bio/seq/io/FastaDescriptionLineParser.java:70: toke ==> took
data/biojava-live-1.7.1/src/org/biojava/bio/seq/io/ProteinRefSeqFileFormer.java:39: intead ==> instead
data/biojava-live-1.7.1/src/org/biojava/bio/seq/io/StreamReader.java:42: seperated ==> separated
data/biojava-live-1.7.1/src/org/biojava/bio/seq/io/StreamReader.java:51: prefered ==> preferred
data/biojava-live-1.7.1/src/org/biojava/bio/seq/io/FastaAlignmentFormat.java:104: toke ==> took
data/biojava-live-1.7.1/src/org/biojava/bio/seq/io/FastaAlignmentFormat.java:107: toke ==> took
data/biojava-live-1.7.1/src/org/biojava/bio/seq/io/MSFAlignmentFormat.java:172: alph ==> alpha
data/biojava-live-1.7.1/src/org/biojava/bio/seq/io/MSFAlignmentFormat.java:182: alph ==> alpha
data/biojava-live-1.7.1/src/org/biojava/bio/seq/io/MSFAlignmentFormat.java:186: alph ==> alpha
data/biojava-live-1.7.1/src/org/biojava/bio/seq/io/MSFAlignmentFormat.java:187: alph ==> alpha
data/biojava-live-1.7.1/src/org/biojava/bio/seq/io/MSFAlignmentFormat.java:195: alph ==> alpha
data/biojava-live-1.7.1/src/org/biojava/bio/seq/io/MSFAlignmentFormat.java:223: toke ==> took
data/biojava-live-1.7.1/src/org/biojava/bio/seq/io/MSFAlignmentFormat.java:240: toke ==> took
data/biojava-live-1.7.1/src/org/biojava/bio/seq/io/MSFAlignmentFormat.java:248: toke ==> took
data/biojava-live-1.7.1/src/org/biojava/bio/seq/io/MSFAlignmentFormat.java:278: toke ==> took
data/biojava-live-1.7.1/src/org/biojava/bio/seq/io/game12/package.html:5: targetted ==> targeted
data/biojava-live-1.7.1/src/org/biojava/bio/seq/io/filterxml/XMLAnnotationTypeWriter.java:232: bloc ==> block
data/biojava-live-1.7.1/src/org/biojava/bio/seq/io/filterxml/XMLAnnotationTypeWriter.java:234: bloc ==> block
data/biojava-live-1.7.1/src/org/biojava/bio/seq/io/filterxml/XMLAnnotationTypeWriter.java:235: bloc ==> block
data/biojava-live-1.7.1/src/org/biojava/bio/seq/io/game/StAXFeatureHandler.java:75: sensitivty ==> sensitivity
data/biojava-live-1.7.1/src/org/biojava/bio/seq/io/game/package.html:4: targetted ==> targeted
data/biojava-live-1.7.1/src/org/biojava/bio/seq/io/game/package.html:11: targetted ==> targeted
data/biojava-live-1.7.1/src/org/biojava/bio/seq/io/game/StAXPropertyHandler.java:83: environmnet ==> environment
data/biojava-live-1.7.1/src/org/biojava/bio/seq/io/game/StAXAdditions.note:18: creats ==> creates
data/biojava-live-1.7.1/src/org/biojava/bio/seq/io/game/GAMEDbxrefPropHandler.java:33: crossreferences ==> cross-references
data/biojava-live-1.7.1/src/org/biojava/bio/seq/io/agave/AGAVEDescPropHandler.java:26: crossreferences ==> cross-references
data/biojava-live-1.7.1/src/org/biojava/bio/seq/io/agave/StAXFeatureHandler.java:145: sensitivty ==> sensitivity
data/biojava-live-1.7.1/src/org/biojava/bio/seq/io/agave/StAXFeatureHandler.java:177: environmnet ==> environment
data/biojava-live-1.7.1/src/org/biojava/bio/seq/io/agave/StAXHandlerFactory.java:25: seperated ==> separated
data/biojava-live-1.7.1/src/org/biojava/bio/seq/io/agave/AGAVEXrefsPropHandler.java:29: crossreferences ==> cross-references
data/biojava-live-1.7.1/src/org/biojava/bio/seq/io/agave/StAXPropertyHandler.java:75: environmnet ==> environment
data/biojava-live-1.7.1/src/org/biojava/bio/seq/io/agave/AGAVEDbIdPropHandler.java:28: crossreferences ==> cross-references
data/biojava-live-1.7.1/src/org/biojava/bio/seq/io/agave/AgaveWriter.java:150: seperated ==> separated
data/biojava-live-1.7.1/src/org/biojava/bio/seq/impl/RevCompSequence.java:53: Waring ==> Warning
data/biojava-live-1.7.1/src/org/biojava/bio/seq/impl/RevCompSequence.java:65: contructor ==> constructor
data/biojava-live-1.7.1/src/org/biojava/bio/seq/impl/TemplateUtils.java:23: readly ==> readily, ready
data/biojava-live-1.7.1/src/org/biojava/bio/seq/impl/TemplateUtils.java:93: publically ==> publicly
data/biojava-live-1.7.1/src/org/biojava/bio/seq/impl/SimpleRemoteFeature.java:121: potentialy ==> potentially
data/biojava-live-1.7.1/src/org/biojava/bio/seq/impl/SimpleFeature.java:439: fo ==> of, for
data/biojava-live-1.7.1/src/org/biojava/bio/seq/impl/SimpleFeature.java:440: fo ==> of, for
data/biojava-live-1.7.1/src/org/biojava/bio/seq/impl/SimpleFeature.java:443: fo ==> of, for
data/biojava-live-1.7.1/src/org/biojava/bio/seq/impl/ViewSequence.java:109: prefered ==> preferred
data/biojava-live-1.7.1/src/org/biojava/bio/seq/impl/ViewSequence.java:139: prefered ==> preferred
data/biojava-live-1.7.1/src/org/biojava/bio/seq/impl/ViewSequence.java:148: prefered ==> preferred
data/biojava-live-1.7.1/src/org/biojava/bio/seq/impl/package.html:5: implemenations ==> implementations
data/biojava-live-1.7.1/src/org/biojava/bio/seq/impl/SimpleSequence.java:75: compatable ==> compatible
data/biojava-live-1.7.1/src/org/biojava/bio/seq/impl/SimpleSequence.java:289: implemetation ==> implementation
data/biojava-live-1.7.1/src/org/biojava/bio/seq/impl/SubSequence.java:332: usefull ==> useful
data/biojava-live-1.7.1/src/org/biojava/bio/seq/db/SequenceDBLite.java:75: uniqe ==> unique
data/biojava-live-1.7.1/src/org/biojava/bio/seq/db/IndexStore.java:37: inerface ==> interface
data/biojava-live-1.7.1/src/org/biojava/bio/seq/db/IndexStore.java:73: uncommited ==> uncommitted
data/biojava-live-1.7.1/src/org/biojava/bio/seq/db/IndexStore.java:128: Symobl ==> Symbol
data/biojava-live-1.7.1/src/org/biojava/bio/seq/db/IndexedSequenceDB.java:60: persistant ==> persistent
data/biojava-live-1.7.1/src/org/biojava/bio/seq/db/IndexedSequenceDB.java:194: succesfuly ==> successfully
data/biojava-live-1.7.1/src/org/biojava/bio/seq/db/NCBISequenceDB.java:53: querys ==> queries
data/biojava-live-1.7.1/src/org/biojava/bio/seq/db/TabIndexStore.java:95: commited ==> committed
data/biojava-live-1.7.1/src/org/biojava/bio/seq/db/TabIndexStore.java:96: uncommited ==> uncommitted
data/biojava-live-1.7.1/src/org/biojava/bio/seq/db/TabIndexStore.java:120: indecies ==> indices
data/biojava-live-1.7.1/src/org/biojava/bio/seq/db/TabIndexStore.java:151: commited ==> committed
data/biojava-live-1.7.1/src/org/biojava/bio/seq/db/TabIndexStore.java:152: uncommited ==> uncommitted
data/biojava-live-1.7.1/src/org/biojava/bio/seq/db/TabIndexStore.java:153: commited ==> committed
data/biojava-live-1.7.1/src/org/biojava/bio/seq/db/TabIndexStore.java:153: uncommited ==> uncommitted
data/biojava-live-1.7.1/src/org/biojava/bio/seq/db/TabIndexStore.java:164: uncommited ==> uncommitted
data/biojava-live-1.7.1/src/org/biojava/bio/seq/db/TabIndexStore.java:184: uncommited ==> uncommitted
data/biojava-live-1.7.1/src/org/biojava/bio/seq/db/TabIndexStore.java:198: commited ==> committed
data/biojava-live-1.7.1/src/org/biojava/bio/seq/db/TabIndexStore.java:198: uncommited ==> uncommitted
data/biojava-live-1.7.1/src/org/biojava/bio/seq/db/TabIndexStore.java:199: uncommited ==> uncommitted
data/biojava-live-1.7.1/src/org/biojava/bio/seq/db/TabIndexStore.java:206: uncommited ==> uncommitted
data/biojava-live-1.7.1/src/org/biojava/bio/seq/db/TabIndexStore.java:288: commited ==> committed
data/biojava-live-1.7.1/src/org/biojava/bio/seq/db/TabIndexStore.java:297: commited ==> committed
data/biojava-live-1.7.1/src/org/biojava/bio/seq/db/TabIndexStore.java:298: uncommited ==> uncommitted
data/biojava-live-1.7.1/src/org/biojava/bio/seq/db/TabIndexStore.java:299: commited ==> committed
data/biojava-live-1.7.1/src/org/biojava/bio/seq/db/TabIndexStore.java:299: uncommited ==> uncommitted
data/biojava-live-1.7.1/src/org/biojava/bio/seq/db/GenbankSequenceDB.java:221: Objet ==> Object
data/biojava-live-1.7.1/src/org/biojava/bio/seq/db/BioIndex.java:143: dependant ==> dependent
data/biojava-live-1.7.1/src/org/biojava/bio/seq/db/BioIndex.java:175: non-existant ==> non-existent
data/biojava-live-1.7.1/src/org/biojava/bio/seq/db/BioIndex.java:301: fo ==> of, for
data/biojava-live-1.7.1/src/org/biojava/bio/seq/db/BioIndex.java:307: fo ==> of, for
data/biojava-live-1.7.1/src/org/biojava/bio/seq/db/BioIndex.java:308: fo ==> of, for
data/biojava-live-1.7.1/src/org/biojava/bio/seq/db/BioIndex.java:309: fo ==> of, for
data/biojava-live-1.7.1/src/org/biojava/bio/seq/db/BioIndex.java:310: fo ==> of, for
data/biojava-live-1.7.1/src/org/biojava/bio/seq/db/BioIndex.java:311: fo ==> of, for
data/biojava-live-1.7.1/src/org/biojava/bio/seq/db/BioIndex.java:312: fo ==> of, for
data/biojava-live-1.7.1/src/org/biojava/bio/seq/db/BioIndex.java:314: fo ==> of, for
data/biojava-live-1.7.1/src/org/biojava/bio/seq/db/BioIndex.java:346: Commitable ==> Committable
data/biojava-live-1.7.1/src/org/biojava/bio/seq/db/BioIndex.java:357: Commitable ==> Committable
data/biojava-live-1.7.1/src/org/biojava/bio/seq/db/biofetch/BioFetchSequenceDB.java:127: toke ==> took
data/biojava-live-1.7.1/src/org/biojava/bio/seq/db/biofetch/BioFetchSequenceDB.java:128: toke ==> took
data/biojava-live-1.7.1/src/org/biojava/bio/seq/db/biofetch/BioFetchSequenceDB.java:130: toke ==> took
data/biojava-live-1.7.1/src/org/biojava/bio/seq/db/flat/FlatSequenceDB.java:113: toke ==> took
data/biojava-live-1.7.1/src/org/biojava/bio/seq/db/flat/FlatSequenceDB.java:116: toke ==> took
data/biojava-live-1.7.1/src/org/biojava/bio/seq/db/biosql/OntologySQL.java:541: commiting ==> committing
data/biojava-live-1.7.1/src/org/biojava/bio/seq/db/biosql/BioSQLSequence.java:211: toke ==> took
data/biojava-live-1.7.1/src/org/biojava/bio/seq/db/biosql/BioSQLSequence.java:212: toke ==> took
data/biojava-live-1.7.1/src/org/biojava/bio/seq/db/biosql/FeaturesSQL.java:361: bloc ==> block
data/biojava-live-1.7.1/src/org/biojava/bio/seq/db/biosql/FeaturesSQL.java:363: bloc ==> block
data/biojava-live-1.7.1/src/org/biojava/bio/seq/db/biosql/FeaturesSQL.java:365: bloc ==> block
data/biojava-live-1.7.1/src/org/biojava/bio/seq/db/biosql/FeaturesSQL.java:426: bloc ==> block
data/biojava-live-1.7.1/src/org/biojava/bio/seq/db/biosql/FeaturesSQL.java:429: bloc ==> block
data/biojava-live-1.7.1/src/org/biojava/bio/seq/db/biosql/FeaturesSQL.java:432: bloc ==> block
data/biojava-live-1.7.1/src/org/biojava/bio/seq/db/biosql/FeaturesSQL.java:435: bloc ==> block
data/biojava-live-1.7.1/src/org/biojava/bio/seq/db/biosql/FeaturesSQL.java:438: bloc ==> block
data/biojava-live-1.7.1/src/org/biojava/bio/seq/db/biosql/FeaturesSQL.java:451: bloc ==> block
data/biojava-live-1.7.1/src/org/biojava/bio/seq/db/biosql/FeaturesSQL.java:694: bloc ==> block
data/biojava-live-1.7.1/src/org/biojava/bio/seq/db/biosql/FeaturesSQL.java:696: bloc ==> block
data/biojava-live-1.7.1/src/org/biojava/bio/seq/db/biosql/FeaturesSQL.java:697: bloc ==> block
data/biojava-live-1.7.1/src/org/biojava/bio/seq/db/biosql/FeaturesSQL.java:718: persistance ==> persistence
data/biojava-live-1.7.1/src/org/biojava/bio/seq/db/biosql/FeaturesSQL.java:881: bloc ==> block
data/biojava-live-1.7.1/src/org/biojava/bio/seq/db/biosql/FeaturesSQL.java:883: bloc ==> block
data/biojava-live-1.7.1/src/org/biojava/bio/seq/db/biosql/FeaturesSQL.java:884: bloc ==> block
data/biojava-live-1.7.1/src/org/biojava/bio/seq/db/biosql/BioSQLFeature.java:364: fo ==> of, for
data/biojava-live-1.7.1/src/org/biojava/bio/seq/db/biosql/BioSQLFeature.java:365: fo ==> of, for
data/biojava-live-1.7.1/src/org/biojava/bio/seq/db/biosql/BioSQLFeature.java:368: fo ==> of, for
data/biojava-live-1.7.1/src/org/biojava/bio/seq/db/biosql/BioSQLAllFeatures.java:194: Changable ==> Changeable
data/biojava-live-1.7.1/src/org/biojava/bio/seq/db/biosql/BioSQLFeatureReceiver.java:105: Non-existant ==> Non-existent
data/biojava-live-1.7.1/src/org/biojava/bio/seq/db/biosql/TaxonSQL.java:114: wee ==> we
data/biojava-live-1.7.1/src/org/biojava/bio/seq/db/biosql/TaxonSQL.java:617: proove ==> prove
data/biojava-live-1.7.1/src/org/biojava/bio/seq/db/biosql/TaxonSQL.java:716: wich ==> which
data/biojava-live-1.7.1/src/org/biojava/bio/seq/db/biosql/TaxonSQL.java:765: necessaryly ==> necessarily
data/biojava-live-1.7.1/src/org/biojava/bio/seq/db/biosql/TaxonSQL.java:885: uniqe ==> unique
data/biojava-live-1.7.1/src/org/biojava/bio/seq/db/biosql/TaxonSQL.java:918: theire ==> their, they're
data/biojava-live-1.7.1/src/org/biojava/bio/seq/db/emblcd/EmblCDROMIndexReader.java:42: architechtures ==> architectures
data/biojava-live-1.7.1/src/org/biojava/bio/seq/db/emblcd/EmblCDROMIndexReader.java:45: architechtures ==> architectures
data/biojava-live-1.7.1/src/org/biojava/bio/seq/distributed/DistributedSequenceDB.java:89: independant ==> independent
data/biojava-live-1.7.1/src/org/biojava/bio/seq/distributed/SequenceDBDataSource.java:36: usefull ==> useful
data/biojava-live-1.7.1/src/org/biojava/bio/seq/distributed/DistDataSource.java:51: seperately ==> separately
data/biojava-live-1.7.1/src/org/biojava/bio/seq/distributed/DistDataSource.java:92: hierachy ==> hierarchy
data/biojava-live-1.7.1/src/org/biojava/bio/seq/distributed/DistDataSource.java:103: Seqeunce ==> Sequence
data/biojava-live-1.7.1/src/org/biojava/bio/seq/distributed/DistDataSource.java:114: hierachy ==> hierarchy
data/biojava-live-1.7.1/src/org/biojava/bio/seq/projection/ProjectedFeature.java:172: fo ==> of, for
data/biojava-live-1.7.1/src/org/biojava/bio/seq/projection/ProjectedFeature.java:173: fo ==> of, for
data/biojava-live-1.7.1/src/org/biojava/bio/seq/projection/ProjectedFeature.java:174: fo ==> of, for
data/biojava-live-1.7.1/src/org/biojava/bio/seq/projection/ReparentContext.java:314: tranformed ==> transformed
data/biojava-live-1.7.1/src/org/biojava/bio/seq/projection/TranslateFlipContext.java:10: optionaly ==> optionally
data/biojava-live-1.7.1/src/org/biojava/bio/seq/projection/TranslateFlipContext.java:13: hierachy ==> hierarchy
data/biojava-live-1.7.1/src/org/biojava/bio/seq/projection/TranslateFlipContext.java:18: dissabled ==> disabled
data/biojava-live-1.7.1/src/org/biojava/bio/seq/projection/TranslateFlipContext.java:20: arround ==> around
data/biojava-live-1.7.1/src/org/biojava/bio/seq/projection/TranslateFlipContext.java:41: featurs ==> features
data/biojava-live-1.7.1/src/org/biojava/bio/seq/projection/TranslateFlipContext.java:43: wether ==> weather, whether
data/biojava-live-1.7.1/src/org/biojava/bio/seq/projection/TranslateFlipContext.java:56: featurs ==> features
data/biojava-live-1.7.1/src/org/biojava/bio/seq/projection/TranslateFlipContext.java:56: arround ==> around
data/biojava-live-1.7.1/src/org/biojava/bio/seq/projection/TranslateFlipContext.java:102: featurs ==> features
data/biojava-live-1.7.1/src/org/biojava/bio/seq/projection/package.html:28: belive ==> believe
data/biojava-live-1.7.1/src/org/biojava/bio/seq/projection/ProjectionUtils.java:52: wether ==> weather, whether
data/biojava-live-1.7.1/src/org/biojava/bio/seq/projection/ProjectionUtils.java:76: wether ==> weather, whether
data/biojava-live-1.7.1/src/org/biojava/bio/seq/projection/ProjectionContext.java:116: accross ==> across
data/biojava-live-1.7.1/src/org/biojava/bio/seq/projection/ProjectionContext.java:205: opperation ==> operation
data/biojava-live-1.7.1/src/org/biojava/bio/symbol/PackedSymbolListFactory.java:70: shoudl ==> should
data/biojava-live-1.7.1/src/org/biojava/bio/symbol/UkkonenSuffixTree.java:236: subtring ==> substring
data/biojava-live-1.7.1/src/org/biojava/bio/symbol/UkkonenSuffixTree.java:302: subtring ==> substring
data/biojava-live-1.7.1/src/org/biojava/bio/symbol/UkkonenSuffixTree.java:710: mathes ==> matches
data/biojava-live-1.7.1/src/org/biojava/bio/symbol/UkkonenSuffixTree.java:711: mathes ==> matches
data/biojava-live-1.7.1/src/org/biojava/bio/symbol/UkkonenSuffixTree.java:790: toke ==> took
data/biojava-live-1.7.1/src/org/biojava/bio/symbol/UkkonenSuffixTree.java:791: toke ==> took
data/biojava-live-1.7.1/src/org/biojava/bio/symbol/SymbolListViews.java:156: guarenteed ==> guaranteed
data/biojava-live-1.7.1/src/org/biojava/bio/symbol/SuffixTree.java:190: realy ==> really
data/biojava-live-1.7.1/src/org/biojava/bio/symbol/HashedAlphabetIndex.java:34: indecies ==> indices
data/biojava-live-1.7.1/src/org/biojava/bio/symbol/CodonPrefTools.java:408: toke ==> took
data/biojava-live-1.7.1/src/org/biojava/bio/symbol/CodonPrefTools.java:410: toke ==> took
data/biojava-live-1.7.1/src/org/biojava/bio/symbol/CodonPrefTools.java:411: toke ==> took
data/biojava-live-1.7.1/src/org/biojava/bio/symbol/CodonPrefTools.java:412: toke ==> took
data/biojava-live-1.7.1/src/org/biojava/bio/symbol/CodonPrefTools.java:465: toke ==> took
data/biojava-live-1.7.1/src/org/biojava/bio/symbol/CodonPrefTools.java:466: toke ==> took
data/biojava-live-1.7.1/src/org/biojava/bio/symbol/CodonPrefTools.java:468: toke ==> took
data/biojava-live-1.7.1/src/org/biojava/bio/symbol/CodonPrefTools.java:476: toke ==> took
data/biojava-live-1.7.1/src/org/biojava/bio/symbol/CodonPrefTools.java:480: toke ==> took
data/biojava-live-1.7.1/src/org/biojava/bio/symbol/CodonPrefTools.java:483: toke ==> took
data/biojava-live-1.7.1/src/org/biojava/bio/symbol/GappedSymbolList.java:33: coppied ==> copied
data/biojava-live-1.7.1/src/org/biojava/bio/symbol/GappedSymbolList.java:81: coordintates ==> coordinates
data/biojava-live-1.7.1/src/org/biojava/bio/symbol/GappedSymbolList.java:160: untill ==> until
data/biojava-live-1.7.1/src/org/biojava/bio/symbol/AlphabetManager.java:193: coudn't ==> couldn't
data/biojava-live-1.7.1/src/org/biojava/bio/symbol/AlphabetManager.java:281: Retreives ==> Retrieves
data/biojava-live-1.7.1/src/org/biojava/bio/symbol/AlphabetManager.java:834: registed ==> registered
data/biojava-live-1.7.1/src/org/biojava/bio/symbol/AlphabetManager.java:859: usefull ==> useful
data/biojava-live-1.7.1/src/org/biojava/bio/symbol/AlphabetManager.java:1266: toke ==> took
data/biojava-live-1.7.1/src/org/biojava/bio/symbol/AlphabetManager.java:1267: toke ==> took
data/biojava-live-1.7.1/src/org/biojava/bio/symbol/AlphabetManager.java:1287: toke ==> took
data/biojava-live-1.7.1/src/org/biojava/bio/symbol/AlphabetManager.java:1295: toke ==> took
data/biojava-live-1.7.1/src/org/biojava/bio/symbol/AlphabetManager.java:1311: toke ==> took
data/biojava-live-1.7.1/src/org/biojava/bio/symbol/AlphabetManager.java:1314: toke ==> took
data/biojava-live-1.7.1/src/org/biojava/bio/symbol/AlphabetManager.java:1403: toke ==> took
data/biojava-live-1.7.1/src/org/biojava/bio/symbol/AlphabetManager.java:1410: toke ==> took
data/biojava-live-1.7.1/src/org/biojava/bio/symbol/AlphabetManager.java:1412: toke ==> took
data/biojava-live-1.7.1/src/org/biojava/bio/symbol/AlphabetManager.java:1424: toke ==> took
data/biojava-live-1.7.1/src/org/biojava/bio/symbol/AlphabetManager.java:1426: toke ==> took
data/biojava-live-1.7.1/src/org/biojava/bio/symbol/AlphabetManager.java:1430: toke ==> took
data/biojava-live-1.7.1/src/org/biojava/bio/symbol/AlphabetManager.java:1430: toke ==> took
data/biojava-live-1.7.1/src/org/biojava/bio/symbol/AlphabetManager.java:1438: toke ==> took
data/biojava-live-1.7.1/src/org/biojava/bio/symbol/AlphabetManager.java:1442: toke ==> took
data/biojava-live-1.7.1/src/org/biojava/bio/symbol/AlphabetManager.java:1448: toke ==> took
data/biojava-live-1.7.1/src/org/biojava/bio/symbol/AlphabetManager.java:1454: toke ==> took
data/biojava-live-1.7.1/src/org/biojava/bio/symbol/AlphabetManager.java:1460: toke ==> took
data/biojava-live-1.7.1/src/org/biojava/bio/symbol/AlphabetManager.java:1464: toke ==> took
data/biojava-live-1.7.1/src/org/biojava/bio/symbol/AlphabetManager.java:1514: unchangable ==> unchangeable
data/biojava-live-1.7.1/src/org/biojava/bio/symbol/AlphabetManager.java:1536: toke ==> took
data/biojava-live-1.7.1/src/org/biojava/bio/symbol/AlphabetManager.java:1537: toke ==> took
data/biojava-live-1.7.1/src/org/biojava/bio/symbol/AlphabetManager.java:1539: toke ==> took
data/biojava-live-1.7.1/src/org/biojava/bio/symbol/AlphabetManager.java:1541: toke ==> took
data/biojava-live-1.7.1/src/org/biojava/bio/symbol/AlphabetManager.java:1543: toke ==> took
data/biojava-live-1.7.1/src/org/biojava/bio/symbol/AlphabetManager.java:1545: toke ==> took
data/biojava-live-1.7.1/src/org/biojava/bio/symbol/AbstractSymbolList.java:101: toke ==> took
data/biojava-live-1.7.1/src/org/biojava/bio/symbol/AbstractSymbolList.java:102: toke ==> took
data/biojava-live-1.7.1/src/org/biojava/bio/symbol/AbstractSymbolList.java:280: toke ==> took
data/biojava-live-1.7.1/src/org/biojava/bio/symbol/AbstractSymbolList.java:281: toke ==> took
data/biojava-live-1.7.1/src/org/biojava/bio/symbol/AbstractSymbolList.java:395: pased ==> passed
data/biojava-live-1.7.1/src/org/biojava/bio/symbol/AbstractSymbolList.java:437: co-ordinates ==> coordinates
data/biojava-live-1.7.1/src/org/biojava/bio/symbol/TranslationTable.java:35: infered ==> inferred
data/biojava-live-1.7.1/src/org/biojava/bio/symbol/Symbol.java:36: realy ==> really
data/biojava-live-1.7.1/src/org/biojava/bio/symbol/Symbol.java:40: potentialy ==> potentially
data/biojava-live-1.7.1/src/org/biojava/bio/symbol/Location.java:203: seperated ==> separated
data/biojava-live-1.7.1/src/org/biojava/bio/symbol/CircularLocation.java:104: lenght ==> length
data/biojava-live-1.7.1/src/org/biojava/bio/symbol/CircularLocation.java:268: guarenteed ==> guaranteed
data/biojava-live-1.7.1/src/org/biojava/bio/symbol/CircularLocation.java:282: guarenteed ==> guaranteed
data/biojava-live-1.7.1/src/org/biojava/bio/symbol/Alphabet.java:60: rever ==> revert, fever
data/biojava-live-1.7.1/src/org/biojava/bio/symbol/CircularLocationTools.java:71: arround ==> around
data/biojava-live-1.7.1/src/org/biojava/bio/symbol/CrossProductAlphabetIndex.java:116: perhasp ==> perhaps
data/biojava-live-1.7.1/src/org/biojava/bio/symbol/LocationTools.java:262: preceeding ==> preceding, proceeding
data/biojava-live-1.7.1/src/org/biojava/bio/symbol/LocationTools.java:295: preceeding ==> preceding, proceeding
data/biojava-live-1.7.1/src/org/biojava/bio/symbol/LocationTools.java:441: bloc ==> block
data/biojava-live-1.7.1/src/org/biojava/bio/symbol/LocationTools.java:442: bloc ==> block
data/biojava-live-1.7.1/src/org/biojava/bio/symbol/LocationTools.java:447: bloc ==> block
data/biojava-live-1.7.1/src/org/biojava/bio/symbol/LocationTools.java:670: situtations ==> situations
data/biojava-live-1.7.1/src/org/biojava/bio/symbol/LocationTools.java:677: lenght ==> length
data/biojava-live-1.7.1/src/org/biojava/bio/symbol/LocationTools.java:804: bloc ==> block
data/biojava-live-1.7.1/src/org/biojava/bio/symbol/LocationTools.java:805: bloc ==> block
data/biojava-live-1.7.1/src/org/biojava/bio/symbol/LocationTools.java:805: bloc ==> block
data/biojava-live-1.7.1/src/org/biojava/bio/symbol/IllegalSymbolException.java:31: alpabet ==> alphabet
data/biojava-live-1.7.1/src/org/biojava/bio/symbol/IllegalSymbolException.java:35: excepions ==> exceptions
data/biojava-live-1.7.1/src/org/biojava/bio/symbol/IllegalSymbolException.java:35: actualy ==> actually
data/biojava-live-1.7.1/src/org/biojava/bio/symbol/Packing.java:93: wether ==> weather, whether
data/biojava-live-1.7.1/src/org/biojava/bio/symbol/FuzzyLocation.java:124: Explictly ==> Explicitly
data/biojava-live-1.7.1/src/org/biojava/bio/symbol/FuzzyLocation.java:125: Explictly ==> Explicitly
data/biojava-live-1.7.1/src/org/biojava/bio/symbol/LinearAlphabetIndex.java:41: Implementatoin ==> Implementation
data/biojava-live-1.7.1/src/org/biojava/bio/symbol/LinearAlphabetIndex.java:172: substantialy ==> substantially
data/biojava-live-1.7.1/src/org/biojava/bio/symbol/AbstractAlphabet.java:130: Sting ==> String
data/biojava-live-1.7.1/src/org/biojava/bio/symbol/AbstractAlphabet.java:140: toke ==> took
data/biojava-live-1.7.1/src/org/biojava/bio/symbol/AbstractAlphabet.java:141: toke ==> took
data/biojava-live-1.7.1/src/org/biojava/bio/symbol/AbstractAlphabet.java:144: toke ==> took
data/biojava-live-1.7.1/src/org/biojava/bio/symbol/AbstractAlphabet.java:146: toke ==> took
data/biojava-live-1.7.1/src/org/biojava/bio/symbol/AbstractAlphabet.java:148: toke ==> took
data/biojava-live-1.7.1/src/org/biojava/bio/symbol/AbstractAlphabet.java:152: toke ==> took
data/biojava-live-1.7.1/src/org/biojava/bio/symbol/AbstractAlphabet.java:154: toke ==> took
data/biojava-live-1.7.1/src/org/biojava/bio/symbol/AbstractAlphabet.java:155: toke ==> took
data/biojava-live-1.7.1/src/org/biojava/bio/symbol/AbstractAlphabet.java:164: toke ==> took
data/biojava-live-1.7.1/src/org/biojava/bio/symbol/Edit.java:57: construtor ==> constructor
data/biojava-live-1.7.1/src/org/biojava/bio/symbol/PackedSymbolList.java:312: methd ==> method
data/biojava-live-1.7.1/src/org/biojava/bio/symbol/SimpleGappedSymbolList.java:732: actualy ==> actually
data/biojava-live-1.7.1/src/org/biojava/bio/symbol/SimpleSymbolList.java:74: Waring ==> Warning
data/biojava-live-1.7.1/src/org/biojava/bio/structure/DBRef.java:30: infor ==> info
data/biojava-live-1.7.1/src/org/biojava/bio/structure/Mutator.java:41: struc ==> struct
data/biojava-live-1.7.1/src/org/biojava/bio/structure/Mutator.java:42: struc ==> struct
data/biojava-live-1.7.1/src/org/biojava/bio/structure/Mutator.java:51: struc ==> struct
data/biojava-live-1.7.1/src/org/biojava/bio/structure/Mutator.java:87: struc ==> struct
data/biojava-live-1.7.1/src/org/biojava/bio/structure/Mutator.java:94: struc ==> struct
data/biojava-live-1.7.1/src/org/biojava/bio/structure/Mutator.java:105: struc ==> struct
data/biojava-live-1.7.1/src/org/biojava/bio/structure/AminoAcid.java:67: struc ==> struct
data/biojava-live-1.7.1/src/org/biojava/bio/structure/AminoAcid.java:74: struc ==> struct
data/biojava-live-1.7.1/src/org/biojava/bio/structure/NucleotideImpl.java:42: occurance ==> occurrence
data/biojava-live-1.7.1/src/org/biojava/bio/structure/AtomIterator.java:154: wile ==> while
data/biojava-live-1.7.1/src/org/biojava/bio/structure/Calc.java:117: substract ==> subtract
data/biojava-live-1.7.1/src/org/biojava/bio/structure/Calc.java:125: substract ==> subtract
data/biojava-live-1.7.1/src/org/biojava/bio/structure/Calc.java:162: skalar ==> scalar
data/biojava-live-1.7.1/src/org/biojava/bio/structure/Calc.java:169: skalar ==> scalar
data/biojava-live-1.7.1/src/org/biojava/bio/structure/Calc.java:170: skalar ==> scalar
data/biojava-live-1.7.1/src/org/biojava/bio/structure/Calc.java:171: skalar ==> scalar
data/biojava-live-1.7.1/src/org/biojava/bio/structure/Calc.java:192: skalar ==> scalar
data/biojava-live-1.7.1/src/org/biojava/bio/structure/Calc.java:195: skalar ==> scalar
data/biojava-live-1.7.1/src/org/biojava/bio/structure/Calc.java:197: skalar ==> scalar
data/biojava-live-1.7.1/src/org/biojava/bio/structure/Calc.java:240: substract ==> subtract
data/biojava-live-1.7.1/src/org/biojava/bio/structure/Calc.java:241: substract ==> subtract
data/biojava-live-1.7.1/src/org/biojava/bio/structure/Calc.java:242: substract ==> subtract
data/biojava-live-1.7.1/src/org/biojava/bio/structure/Calc.java:243: substract ==> subtract
data/biojava-live-1.7.1/src/org/biojava/bio/structure/Calc.java:332: aroud ==> around
data/biojava-live-1.7.1/src/org/biojava/bio/structure/Calc.java:455: coodinates ==> coordinates
data/biojava-live-1.7.1/src/org/biojava/bio/structure/package.html:10: laod ==> load
data/biojava-live-1.7.1/src/org/biojava/bio/structure/ChainImpl.java:236: hte ==> the
data/biojava-live-1.7.1/src/org/biojava/bio/structure/Compound.java:208: Synomym ==> Synonym
data/biojava-live-1.7.1/src/org/biojava/bio/structure/SVDSuperimposer.java:41: struc ==> struct
data/biojava-live-1.7.1/src/org/biojava/bio/structure/SVDSuperimposer.java:42: struc ==> struct
data/biojava-live-1.7.1/src/org/biojava/bio/structure/SVDSuperimposer.java:43: struc ==> struct
data/biojava-live-1.7.1/src/org/biojava/bio/structure/SVDSuperimposer.java:193: coordiantes ==> coordinates
data/biojava-live-1.7.1/src/org/biojava/bio/structure/Structure.java:233: CONECT ==> CONNECT
data/biojava-live-1.7.1/src/org/biojava/bio/structure/Structure.java:238: CONECT ==> CONNECT
data/biojava-live-1.7.1/src/org/biojava/bio/structure/Structure.java:258: CONECT ==> CONNECT
data/biojava-live-1.7.1/src/org/biojava/bio/structure/AminoAcidImpl.java:69: indeces ==> indices
data/biojava-live-1.7.1/src/org/biojava/bio/structure/AminoAcidImpl.java:71: struc ==> struct
data/biojava-live-1.7.1/src/org/biojava/bio/structure/AminoAcidImpl.java:80: struc ==> struct
data/biojava-live-1.7.1/src/org/biojava/bio/structure/io/DASStructureClient.java:68: retreive ==> retrieve
data/biojava-live-1.7.1/src/org/biojava/bio/structure/io/PDBSRSReader.java:62: shouldbe ==> should, should be
data/biojava-live-1.7.1/src/org/biojava/bio/structure/io/PDBFileReader.java:160: struc ==> struct
data/biojava-live-1.7.1/src/org/biojava/bio/structure/io/PDBFileReader.java:161: struc ==> struct
data/biojava-live-1.7.1/src/org/biojava/bio/structure/io/PDBFileReader.java:163: struc ==> struct
data/biojava-live-1.7.1/src/org/biojava/bio/structure/io/PDBFileReader.java:452: struc ==> struct
data/biojava-live-1.7.1/src/org/biojava/bio/structure/io/PDBFileReader.java:453: struc ==> struct
data/biojava-live-1.7.1/src/org/biojava/bio/structure/io/PDBFileReader.java:486: struc ==> struct
data/biojava-live-1.7.1/src/org/biojava/bio/structure/io/PDBFileReader.java:487: struc ==> struct
data/biojava-live-1.7.1/src/org/biojava/bio/structure/io/PDBFileParser.java:206: strucuture ==> structure
data/biojava-live-1.7.1/src/org/biojava/bio/structure/io/PDBFileParser.java:767: SER ==> SET
data/biojava-live-1.7.1/src/org/biojava/bio/structure/io/PDBFileParser.java:768: SER ==> SET
data/biojava-live-1.7.1/src/org/biojava/bio/structure/io/PDBFileParser.java:768: SER ==> SET
data/biojava-live-1.7.1/src/org/biojava/bio/structure/io/PDBFileParser.java:770: SER ==> SET
data/biojava-live-1.7.1/src/org/biojava/bio/structure/io/PDBFileParser.java:773: SER ==> SET
data/biojava-live-1.7.1/src/org/biojava/bio/structure/io/PDBFileParser.java:773: SER ==> SET
data/biojava-live-1.7.1/src/org/biojava/bio/structure/io/PDBFileParser.java:775: SER ==> SET
data/biojava-live-1.7.1/src/org/biojava/bio/structure/io/PDBFileParser.java:1034: currrent ==> current
data/biojava-live-1.7.1/src/org/biojava/bio/structure/io/PDBFileParser.java:1258: currrent ==> current
data/biojava-live-1.7.1/src/org/biojava/bio/structure/io/PDBFileParser.java:1689: CONECT ==> CONNECT
data/biojava-live-1.7.1/src/org/biojava/bio/structure/io/PDBFileParser.java:1693: CONECT ==> CONNECT
data/biojava-live-1.7.1/src/org/biojava/bio/structure/io/PDBFileParser.java:1749: CONECT ==> CONNECT
data/biojava-live-1.7.1/src/org/biojava/bio/structure/io/PDBFileParser.java:2080: CONECT ==> CONNECT
data/biojava-live-1.7.1/src/org/biojava/bio/structure/io/PDBFileParser.java:2182: occured ==> occurred
data/biojava-live-1.7.1/src/org/biojava/bio/structure/io/MMCIFFileReader.java:52: struc ==> struct
data/biojava-live-1.7.1/src/org/biojava/bio/structure/io/MMCIFFileReader.java:53: struc ==> struct
data/biojava-live-1.7.1/src/org/biojava/bio/structure/io/MMCIFFileReader.java:76: struc ==> struct
data/biojava-live-1.7.1/src/org/biojava/bio/structure/io/MMCIFFileReader.java:77: struc ==> struct
data/biojava-live-1.7.1/src/org/biojava/bio/structure/io/FileConvert.java:55: struc ==> struct
data/biojava-live-1.7.1/src/org/biojava/bio/structure/io/FileConvert.java:57: struc ==> struct
data/biojava-live-1.7.1/src/org/biojava/bio/structure/io/FileConvert.java:58: struc ==> struct
data/biojava-live-1.7.1/src/org/biojava/bio/structure/io/FileConvert.java:63: inlcuding ==> including
data/biojava-live-1.7.1/src/org/biojava/bio/structure/io/FileConvert.java:163: CONECT ==> CONNECT
data/biojava-live-1.7.1/src/org/biojava/bio/structure/io/FileConvert.java:191: informaton ==> information
data/biojava-live-1.7.1/src/org/biojava/bio/structure/io/FileConvert.java:426: CONECT ==> CONNECT
data/biojava-live-1.7.1/src/org/biojava/bio/structure/io/PDBMSDReader.java:48: retreive ==> retrieve
data/biojava-live-1.7.1/src/org/biojava/bio/structure/io/PDBMSDReader.java:62: conenction ==> connection
data/biojava-live-1.7.1/src/org/biojava/bio/structure/io/mmcif/SimpleMMcifConsumer.java:954: interal ==> internal, interval, integral
data/biojava-live-1.7.1/src/org/biojava/bio/structure/io/mmcif/SimpleMMcifConsumer.java:974: interal ==> internal, interval, integral
data/biojava-live-1.7.1/src/org/biojava/bio/structure/io/mmcif/chem/ChemCompTools.java:87: SER ==> SET
data/biojava-live-1.7.1/src/org/biojava/bio/structure/io/mmcif/chem/ChemCompTools.java:112: SER ==> SET
data/biojava-live-1.7.1/src/org/biojava/bio/structure/io/mmcif/model/StructRef.java:24: containt ==> contain, content
data/biojava-live-1.7.1/src/org/biojava/bio/structure/jama/Matrix.java:81: colums ==> columns
data/biojava-live-1.7.1/src/org/biojava/bio/structure/jama/Matrix.java:92: colums ==> columns
data/biojava-live-1.7.1/src/org/biojava/bio/structure/jama/Matrix.java:127: colums ==> columns
data/biojava-live-1.7.1/src/org/biojava/bio/structure/jama/Matrix.java:878: colums ==> columns
data/biojava-live-1.7.1/src/org/biojava/bio/structure/jama/Matrix.java:895: colums ==> columns
data/biojava-live-1.7.1/src/org/biojava/bio/structure/jama/LUDecomposition.java:10: decompostion ==> decomposition
data/biojava-live-1.7.1/src/org/biojava/bio/structure/jama/SingularValueDecomposition.java:12: decompostion ==> decomposition
data/biojava-live-1.7.1/src/org/biojava/bio/structure/jama/QRDecomposition.java:10: decompostion ==> decomposition
data/biojava-live-1.7.1/src/org/biojava/bio/structure/server/FlatFileInstallation.java:51: experimetnal ==> experimental
data/biojava-live-1.7.1/src/org/biojava/bio/structure/server/MMCIFFileInstallation.java:199: struc ==> struct
data/biojava-live-1.7.1/src/org/biojava/bio/structure/server/MMCIFFileInstallation.java:219: struc ==> struct
data/biojava-live-1.7.1/src/org/biojava/bio/structure/server/MMCIFFileInstallation.java:223: struc ==> struct
data/biojava-live-1.7.1/src/org/biojava/bio/structure/align/StrucAligParameters.java:148: interation ==> iteration, interaction
data/biojava-live-1.7.1/src/org/biojava/bio/structure/align/StrucAligParameters.java:301: inital ==> initial
data/biojava-live-1.7.1/src/org/biojava/bio/structure/align/helper/JointFragments.java:76: kno ==> know
data/biojava-live-1.7.1/src/org/biojava/bio/structure/align/helper/JointFragments.java:77: kno ==> know
data/biojava-live-1.7.1/src/org/biojava/bio/structure/align/helper/JointFragments.java:77: kno ==> know
data/biojava-live-1.7.1/src/org/biojava/bio/structure/align/pairwise/AlternativeAlignment.java:203: euqivalent ==> equivalent
data/biojava-live-1.7.1/src/org/biojava/bio/structure/align/pairwise/AlternativeAlignment.java:314: inital ==> initial
data/biojava-live-1.7.1/src/org/biojava/bio/structure/align/pairwise/AlternativeAlignment.java:477: inital ==> initial
data/biojava-live-1.7.1/src/org/biojava/bio/structure/align/pairwise/AlternativeAlignment.java:843: artifical ==> artificial
data/biojava-live-1.7.1/src/org/biojava/bio/structure/align/pairwise/Gotoh.java:309: indeces ==> indices
data/biojava-live-1.7.1/src/org/biojava/bio/structure/gui/BiojavaJmol.java:80: struc ==> struct
data/biojava-live-1.7.1/src/org/biojava/bio/structure/gui/BiojavaJmol.java:84: struc ==> struct
data/biojava-live-1.7.1/src/org/biojava/bio/structure/gui/util/SequenceMouseListener.java:38: triggeres ==> triggers
data/biojava-live-1.7.1/src/org/biojava/bio/structure/gui/events/JmolAlignedPositionListener.java:69: requsting ==> requesting
data/biojava-live-1.7.1/src/org/biojava/bio/dist/DistributionTools.java:75: Overide ==> Override
data/biojava-live-1.7.1/src/org/biojava/bio/dist/DistributionTools.java:75: constructer ==> constructor
data/biojava-live-1.7.1/src/org/biojava/bio/dist/DistributionTools.java:133: Distrubution ==> Distribution
data/biojava-live-1.7.1/src/org/biojava/bio/dist/DistributionTools.java:221: excpected ==> expected
data/biojava-live-1.7.1/src/org/biojava/bio/dist/DistributionTools.java:280: occurence ==> occurrence
data/biojava-live-1.7.1/src/org/biojava/bio/dist/OrderNDistribution.java:87: assocated ==> associated
data/biojava-live-1.7.1/src/org/biojava/bio/dist/AbstractDistribution.java:164: opperation ==> operation
data/biojava-live-1.7.1/src/org/biojava/bio/dist/DistributionTrainer.java:68: agregate ==> aggregate
data/biojava-live-1.7.1/src/org/biojava/bio/dist/DistributionTrainer.java:74: agregate ==> aggregate
data/biojava-live-1.7.1/src/org/biojava/bio/dist/IndexedCount.java:227: indecies ==> indices
data/biojava-live-1.7.1/src/org/biojava/bio/dist/TranslatedDistribution.java:104: ditribution ==> distribution
data/biojava-live-1.7.1/src/org/biojava/bio/dist/XMLDistributionWriter.java:48: ond ==> one
data/biojava-live-1.7.1/src/org/biojava/bio/dist/XMLDistributionWriter.java:56: ond ==> one
data/biojava-live-1.7.1/src/org/biojava/bio/dist/XMLDistributionWriter.java:59: ond ==> one
data/biojava-live-1.7.1/src/org/biojava/bio/dist/XMLDistributionWriter.java:66: ond ==> one
data/biojava-live-1.7.1/src/org/biojava/bio/dist/SimpleDistributionTrainer.java:40: implemenation ==> implementation
data/biojava-live-1.7.1/src/org/biojava/bio/dist/XMLDistributionReader.java:120: reccomended ==> recommended
data/biojava-live-1.7.1/src/org/biojava/bio/dist/PairDistribution.java:47: independant ==> independent
data/biojava-live-1.7.1/src/org/biojava/bio/dist/PairDistribution.java:153: seccond ==> second
data/biojava-live-1.7.1/src/org/biojava/bio/dist/PairDistribution.java:155: seccond ==> second
data/biojava-live-1.7.1/src/org/biojava/bio/dist/Distribution.java:45: funcitons ==> functions
data/biojava-live-1.7.1/src/org/biojava/bio/dist/Distribution.java:146: apropriate ==> appropriate
data/biojava-live-1.7.1/src/org/biojava/bio/dist/Distribution.java:155: Distirbution ==> Distribution
data/biojava-live-1.7.1/src/org/biojava/bio/dp/DP.java:73: funcitons ==> functions
data/biojava-live-1.7.1/src/org/biojava/bio/dp/DP.java:76: recieve ==> receive
data/biojava-live-1.7.1/src/org/biojava/bio/dp/DP.java:110: likelyhood ==> likelihood
data/biojava-live-1.7.1/src/org/biojava/bio/dp/DP.java:350: dissapeared ==> disappeared
data/biojava-live-1.7.1/src/org/biojava/bio/dp/DP.java:404: dissapeared ==> disappeared
data/biojava-live-1.7.1/src/org/biojava/bio/dp/SimpleMarkovModel.java:63: transFrom ==> transform
data/biojava-live-1.7.1/src/org/biojava/bio/dp/SimpleMarkovModel.java:69: transFrom ==> transform
data/biojava-live-1.7.1/src/org/biojava/bio/dp/SimpleMarkovModel.java:157: probabilites ==> probabilities
data/biojava-live-1.7.1/src/org/biojava/bio/dp/SimpleMarkovModel.java:283: transFrom ==> transform
data/biojava-live-1.7.1/src/org/biojava/bio/dp/SimpleMarkovModel.java:289: transFrom ==> transform
data/biojava-live-1.7.1/src/org/biojava/bio/dp/SimpleMarkovModel.java:369: transFrom ==> transform
data/biojava-live-1.7.1/src/org/biojava/bio/dp/SimpleMarkovModel.java:385: untill ==> until
data/biojava-live-1.7.1/src/org/biojava/bio/dp/SimpleMarkovModel.java:393: untill ==> until
data/biojava-live-1.7.1/src/org/biojava/bio/dp/SimpleMarkovModel.java:424: transFrom ==> transform
data/biojava-live-1.7.1/src/org/biojava/bio/dp/WMAsMM.java:64: transFrom ==> transform
data/biojava-live-1.7.1/src/org/biojava/bio/dp/WMAsMM.java:108: transFrom ==> transform
data/biojava-live-1.7.1/src/org/biojava/bio/dp/WMAsMM.java:181: transFrom ==> transform
data/biojava-live-1.7.1/src/org/biojava/bio/dp/WMAsMM.java:205: transFrom ==> transform
data/biojava-live-1.7.1/src/org/biojava/bio/dp/EmissionState.java:37: actualy ==> actually
data/biojava-live-1.7.1/src/org/biojava/bio/dp/EmissionState.java:58: ditribution ==> distribution
data/biojava-live-1.7.1/src/org/biojava/bio/dp/MarkovModel.java:52: previos ==> previous
data/biojava-live-1.7.1/src/org/biojava/bio/dp/MarkovModel.java:171: wether ==> weather, whether
data/biojava-live-1.7.1/src/org/biojava/bio/dp/MarkovModel.java:175: wether ==> weather, whether
data/biojava-live-1.7.1/src/org/biojava/bio/dp/MarkovModel.java:228: untill ==> until
data/biojava-live-1.7.1/src/org/biojava/bio/dp/XmlMarkovModel.java:324: dissapeared ==> disappeared
data/biojava-live-1.7.1/src/org/biojava/bio/dp/ProfileHMM.java:105: propper ==> proper
data/biojava-live-1.7.1/src/org/biojava/bio/dp/FlatModel.java:51: essentialy ==> essentially
data/biojava-live-1.7.1/src/org/biojava/bio/dp/FlatModel.java:243: broked ==> broken
data/biojava-live-1.7.1/src/org/biojava/bio/dp/BaumWelchSampler.java:140: dissapeared ==> disappeared
data/biojava-live-1.7.1/src/org/biojava/bio/dp/WeightMatrixAnnotator.java:88: weigth ==> weight
data/biojava-live-1.7.1/src/org/biojava/bio/dp/StatePath.java:63: co-ordinate ==> coordinate
data/biojava-live-1.7.1/src/org/biojava/bio/dp/StatePath.java:81: likelyhood ==> likelihood
data/biojava-live-1.7.1/src/org/biojava/bio/dp/TrainingAlgorithm.java:40: untill ==> until
data/biojava-live-1.7.1/src/org/biojava/bio/dp/twohead/DPCompiler.java:127: dissapeared ==> disappeared
data/biojava-live-1.7.1/src/org/biojava/bio/dp/twohead/DPCompiler.java:1245: initalizing ==> initializing
data/biojava-live-1.7.1/src/org/biojava/bio/dp/twohead/DPCompiler.java:1359: emiting ==> emitting
data/biojava-live-1.7.1/src/org/biojava/bio/dp/twohead/DPCompiler.java:1632: primative ==> primitive
data/biojava-live-1.7.1/src/org/biojava/bio/dp/twohead/DPCompiler.java:1697: Counld ==> Could
data/biojava-live-1.7.1/src/org/biojava/bio/dp/twohead/DPCompiler.java:1699: Counld ==> Could
data/biojava-live-1.7.1/src/org/biojava/bio/dp/twohead/DPCompiler.java:1701: Counld ==> Could
data/biojava-live-1.7.1/src/org/biojava/bio/dp/twohead/DPCompiler.java:1714: Counld ==> Could
data/biojava-live-1.7.1/src/org/biojava/bio/dp/twohead/DPCompiler.java:1716: Counld ==> Could
data/biojava-live-1.7.1/src/org/biojava/bio/dp/twohead/DPCompiler.java:1718: Counld ==> Could
data/biojava-live-1.7.1/src/org/biojava/bio/dp/twohead/DPCompiler.java:1731: Counld ==> Could
data/biojava-live-1.7.1/src/org/biojava/bio/dp/twohead/DPCompiler.java:1733: Counld ==> Could
data/biojava-live-1.7.1/src/org/biojava/bio/dp/twohead/DPCompiler.java:1735: Counld ==> Could
data/biojava-live-1.7.1/src/org/biojava/bio/dp/twohead/PairDPCursor.java:32: wether ==> weather, whether
data/biojava-live-1.7.1/src/org/biojava/bio/dp/onehead/SingleDP.java:627: Succesfully ==> Successfully
data/biojava-live-1.7.1/src/org/biojava/bio/search/KnuthMorrisPrattSearch.java:74: occurances ==> occurrences
data/biojava-live-1.7.1/src/org/biojava/bio/search/KnuthMorrisPrattSearch.java:78: occurance ==> occurrence
data/biojava-live-1.7.1/src/org/biojava/bio/search/KnuthMorrisPrattSearch.java:174: lenghts ==> lengths
data/biojava-live-1.7.1/src/org/biojava/bio/search/BioPattern.java:37: independant ==> independent
data/biojava-live-1.7.1/src/org/biojava/bio/search/SeqContentPattern.java:61: potentialy ==> potentially
data/biojava-live-1.7.1/src/org/biojava/bio/search/SearchContentHandler.java:140: identifer ==> identifier
data/biojava-live-1.7.1/src/org/biojava/bio/search/SearchContentFilter.java:34: propogate ==> propagate
data/biojava-live-1.7.1/src/org/biojava/bio/search/SeqContentMatcher.java:40: independant ==> independent
data/biojava-live-1.7.1/src/org/biojava/bio/search/SeqContentMatcher.java:40: externaly ==> externally
data/biojava-live-1.7.1/src/org/biojava/bio/search/BioMatcher.java:47: wether ==> weather, whether
data/biojava-live-1.7.1/src/org/biojava/bio/chromatogram/SimpleChromatogram.java:40: programatically ==> programmatically
data/biojava-live-1.7.1/src/org/biojava/bio/gui/StackedLogoPainter.java:93: toke ==> took
data/biojava-live-1.7.1/src/org/biojava/bio/gui/StackedLogoPainter.java:95: toke ==> took
data/biojava-live-1.7.1/src/org/biojava/bio/gui/StackedLogoPainter.java:103: toke ==> took
data/biojava-live-1.7.1/src/org/biojava/bio/gui/StackedLogoPainter.java:114: dissapeared ==> disappeared
data/biojava-live-1.7.1/src/org/biojava/bio/gui/StackedLogoPainter.java:160: toke ==> took
data/biojava-live-1.7.1/src/org/biojava/bio/gui/StackedLogoPainter.java:162: toke ==> took
data/biojava-live-1.7.1/src/org/biojava/bio/gui/StackedLogoPainter.java:163: toke ==> took
data/biojava-live-1.7.1/src/org/biojava/bio/gui/StackedLogoPainter.java:163: toke ==> took
data/biojava-live-1.7.1/src/org/biojava/bio/gui/StackedLogoPainter.java:174: toke ==> took
data/biojava-live-1.7.1/src/org/biojava/bio/gui/StackedLogoPainter.java:174: toke ==> took
data/biojava-live-1.7.1/src/org/biojava/bio/gui/TextBlock.java:71: toke ==> took
data/biojava-live-1.7.1/src/org/biojava/bio/gui/TextBlock.java:73: toke ==> took
data/biojava-live-1.7.1/src/org/biojava/bio/gui/TextBlock.java:80: toke ==> took
data/biojava-live-1.7.1/src/org/biojava/bio/gui/TextLogoPainter.java:54: informaton ==> information
data/biojava-live-1.7.1/src/org/biojava/bio/gui/TextLogoPainter.java:135: toke ==> took
data/biojava-live-1.7.1/src/org/biojava/bio/gui/TextLogoPainter.java:137: toke ==> took
data/biojava-live-1.7.1/src/org/biojava/bio/gui/TextLogoPainter.java:176: toke ==> took
data/biojava-live-1.7.1/src/org/biojava/bio/gui/DistributionLogo.java:60: usefull ==> useful
data/biojava-live-1.7.1/src/org/biojava/bio/gui/DistributionLogo.java:60: arround ==> around
data/biojava-live-1.7.1/src/org/biojava/bio/gui/SimpleSymbolStyle.java:78: dissapeared ==> disappeared
data/biojava-live-1.7.1/src/org/biojava/bio/gui/BarLogoPainter.java:37: informaton ==> information
data/biojava-live-1.7.1/src/org/biojava/bio/gui/DNAStyle.java:82: dissapeared ==> disappeared
data/biojava-live-1.7.1/src/org/biojava/bio/gui/sequence/BeadFeatureRenderer.java:58: displacment ==> displacement
data/biojava-live-1.7.1/src/org/biojava/bio/gui/sequence/CircularRendererPanel.java:22: carefull ==> careful, carefully
data/biojava-live-1.7.1/src/org/biojava/bio/gui/sequence/AbstractBeadRenderer.java:366: displacment ==> displacement
data/biojava-live-1.7.1/src/org/biojava/bio/gui/sequence/AbstractBeadRenderer.java:379: displacment ==> displacement
data/biojava-live-1.7.1/src/org/biojava/bio/gui/sequence/AbstractPeptideDigestRenderer.java:194: differenciate ==> differentiate
data/biojava-live-1.7.1/src/org/biojava/bio/gui/sequence/PairwiseFilteringRenderer.java:56: everthing ==> everything
data/biojava-live-1.7.1/src/org/biojava/bio/gui/sequence/SequencePoster.java:380: seperate ==> separate
data/biojava-live-1.7.1/src/org/biojava/bio/gui/sequence/SequencePoster.java:382: seperating ==> separating
data/biojava-live-1.7.1/src/org/biojava/bio/gui/sequence/SubSequenceRenderContext.java:37: co-ordinates ==> coordinates
data/biojava-live-1.7.1/src/org/biojava/bio/gui/sequence/OffsetRulerRenderer.java:177: maxiumum ==> maximum
data/biojava-live-1.7.1/src/org/biojava/bio/gui/sequence/LabelledSequenceRenderer.java:72: lable ==> label
data/biojava-live-1.7.1/src/org/biojava/bio/gui/sequence/LabelledSequenceRenderer.java:217: cant ==> can't
data/biojava-live-1.7.1/src/org/biojava/bio/gui/sequence/LabelledSequenceRenderer.java:309: som ==> some
data/biojava-live-1.7.1/src/org/biojava/bio/gui/sequence/LabelledSequenceRenderer.java:319: possition ==> position
data/biojava-live-1.7.1/src/org/biojava/bio/gui/sequence/PairwiseSequenceRenderer.java:35: analagous ==> analogous
data/biojava-live-1.7.1/src/org/biojava/bio/gui/sequence/SequencePanelWrapper.java:307: wierd ==> weird
data/biojava-live-1.7.1/src/org/biojava/bio/gui/sequence/SequencePanelWrapper.java:319: wierd ==> weird
data/biojava-live-1.7.1/src/org/biojava/bio/gui/sequence/CircularRendererContext.java:41: arround ==> around
data/biojava-live-1.7.1/src/org/biojava/bio/gui/sequence/GappedRenderer.java:22: co-ordinate ==> coordinate
data/biojava-live-1.7.1/src/org/biojava/bio/molbio/RestrictionEnzymeManager.java:178: unmodifable ==> unmodifiable
data/biojava-live-1.7.1/src/org/biojava/bio/molbio/RestrictionEnzymeManager.java:207: unmodifable ==> unmodifiable
data/biojava-live-1.7.1/src/org/biojava/bio/molbio/RestrictionEnzymeManager.java:248: unmodifable ==> unmodifiable
data/biojava-live-1.7.1/src/org/biojava/bio/program/BlastLikeToXMLConverter.java:126: specificed ==> specified
data/biojava-live-1.7.1/src/org/biojava/bio/program/BlastLikeToXMLConverter.java:228: specificed ==> specified
data/biojava-live-1.7.1/src/org/biojava/bio/program/PdbToXMLConverter.java:123: specificed ==> specified
data/biojava-live-1.7.1/src/org/biojava/bio/program/phred/PhredFormat.java:79: Retrive ==> Retrieve
data/biojava-live-1.7.1/src/org/biojava/bio/program/phred/PhredFormat.java:218: implemention ==> implementation
data/biojava-live-1.7.1/src/org/biojava/bio/program/phred/Qualitative.java:41: Retreives ==> Retrieves
data/biojava-live-1.7.1/src/org/biojava/bio/program/phred/Qualitative.java:46: Retreives ==> Retrieves
data/biojava-live-1.7.1/src/org/biojava/bio/program/phred/PhredTools.java:109: Retrives ==> Retrieves
data/biojava-live-1.7.1/src/org/biojava/bio/program/phred/PhredTools.java:125: Retrives ==> Retrieves
data/biojava-live-1.7.1/src/org/biojava/bio/program/phred/PhredTools.java:242: convinience ==> convenience
data/biojava-live-1.7.1/src/org/biojava/bio/program/homologene/Orthologue.java:41: thsi ==> this
data/biojava-live-1.7.1/src/org/biojava/bio/program/hmmer/HmmerProfileParser.java:49: alph ==> alpha
data/biojava-live-1.7.1/src/org/biojava/bio/program/hmmer/HmmerProfileParser.java:85: alph ==> alpha
data/biojava-live-1.7.1/src/org/biojava/bio/program/hmmer/HmmerProfileParser.java:238: alph ==> alpha
data/biojava-live-1.7.1/src/org/biojava/bio/program/hmmer/HmmerProfileParser.java:439: alph ==> alpha
data/biojava-live-1.7.1/src/org/biojava/bio/program/xff/package.html:3: targetted ==> targeted
data/biojava-live-1.7.1/src/org/biojava/bio/program/abi/ABIFChromatogram.java:65: efficent ==> efficient
data/biojava-live-1.7.1/src/org/biojava/bio/program/abi/ABITrace.java:53: programatically ==> programmatically
data/biojava-live-1.7.1/src/org/biojava/bio/program/abi/ABITrace.java:156: programatically ==> programmatically
data/biojava-live-1.7.1/src/org/biojava/bio/program/abi/ABITrace.java:202: indiates ==> indicates
data/biojava-live-1.7.1/src/org/biojava/bio/program/abi/ABITrace.java:317: datas ==> data
data/biojava-live-1.7.1/src/org/biojava/bio/program/abi/ABITrace.java:320: datas ==> data
data/biojava-live-1.7.1/src/org/biojava/bio/program/abi/ABITrace.java:321: datas ==> data
data/biojava-live-1.7.1/src/org/biojava/bio/program/abi/ABITrace.java:322: datas ==> data
data/biojava-live-1.7.1/src/org/biojava/bio/program/abi/ABITrace.java:323: datas ==> data
data/biojava-live-1.7.1/src/org/biojava/bio/program/abi/ABITrace.java:335: datas ==> data
data/biojava-live-1.7.1/src/org/biojava/bio/program/abi/ABITrace.java:338: datas ==> data
data/biojava-live-1.7.1/src/org/biojava/bio/program/abi/ABITrace.java:341: datas ==> data
data/biojava-live-1.7.1/src/org/biojava/bio/program/abi/ABITrace.java:344: datas ==> data
data/biojava-live-1.7.1/src/org/biojava/bio/program/tagvalue/Index2Model.java:69: hierachy ==> hierarchy
data/biojava-live-1.7.1/src/org/biojava/bio/program/tagvalue/Index2Model.java:73: potentialy ==> potentially
data/biojava-live-1.7.1/src/org/biojava/bio/program/tagvalue/TagMapper.java:56: substitue ==> substitute
data/biojava-live-1.7.1/src/org/biojava/bio/program/tagvalue/TagValueListener.java:39: recieving ==> receiving
data/biojava-live-1.7.1/src/org/biojava/bio/program/tagvalue/TagDropper.java:89: wether ==> weather, whether
data/biojava-live-1.7.1/src/org/biojava/bio/program/tagvalue/package.html:53: Additionaly ==> Additionally
data/biojava-live-1.7.1/src/org/biojava/bio/program/tagvalue/MultiTagger.java:11: seperate ==> separate
data/biojava-live-1.7.1/src/org/biojava/bio/program/tagvalue/MultiTagger.java:13: ist ==> is, it, its, it's, sit, list
data/biojava-live-1.7.1/src/org/biojava/bio/program/tagvalue/MultiTagger.java:20: Agregator ==> Aggregator
data/biojava-live-1.7.1/src/org/biojava/bio/program/tagvalue/MultiTagger.java:21: logcal ==> logical
data/biojava-live-1.7.1/src/org/biojava/bio/program/tagvalue/MultiTagger.java:88: bounary ==> boundary
data/biojava-live-1.7.1/src/org/biojava/bio/program/tagvalue/ValueChanger.java:39: individualy ==> individually
data/biojava-live-1.7.1/src/org/biojava/bio/program/tagvalue/ValueChanger.java:45: precendence ==> precedence
data/biojava-live-1.7.1/src/org/biojava/bio/program/tagvalue/ValueChanger.java:46: precendence ==> precedence
data/biojava-live-1.7.1/src/org/biojava/bio/program/tagvalue/Parser.java:146: arround ==> around
data/biojava-live-1.7.1/src/org/biojava/bio/program/tagvalue/RegexParser.java:11: analgous ==> analogous
data/biojava-live-1.7.1/src/org/biojava/bio/program/tagvalue/Formats.java:33: strucure ==> structure
data/biojava-live-1.7.1/src/org/biojava/bio/program/xml/SimpleXMLEmitter.java:32: accidently ==> accidentally
data/biojava-live-1.7.1/src/org/biojava/bio/program/scf/SCF.java:333: approriate ==> appropriate
data/biojava-live-1.7.1/src/org/biojava/bio/program/scf/SCF.java:639: ue ==> use, due
data/biojava-live-1.7.1/src/org/biojava/bio/program/scf/SCF.java:640: ue ==> use, due
data/biojava-live-1.7.1/src/org/biojava/bio/program/scf/SCF.java:641: ue ==> use, due
data/biojava-live-1.7.1/src/org/biojava/bio/program/scf/SCF.java:731: ue ==> use, due
data/biojava-live-1.7.1/src/org/biojava/bio/program/scf/SCF.java:733: ue ==> use, due
data/biojava-live-1.7.1/src/org/biojava/bio/program/scf/SCF.java:734: ue ==> use, due
data/biojava-live-1.7.1/src/org/biojava/bio/program/indexdb/IndexStore.java:59: retuned ==> returned
data/biojava-live-1.7.1/src/org/biojava/bio/program/indexdb/PropertiesAnnotation.java:33: Commitable ==> Committable
data/biojava-live-1.7.1/src/org/biojava/bio/program/indexdb/PropertiesAnnotation.java:43: Commitable ==> Committable
data/biojava-live-1.7.1/src/org/biojava/bio/program/indexdb/ConfigFile.java:37: Commitable ==> Committable
data/biojava-live-1.7.1/src/org/biojava/bio/program/indexdb/ConfigFile.java:48: Commitable ==> Committable
data/biojava-live-1.7.1/src/org/biojava/bio/program/indexdb/BioStore.java:239: KeyPair ==> key pair
data/biojava-live-1.7.1/src/org/biojava/bio/program/indexdb/BioStore.java:239: keyPair ==> key pair
data/biojava-live-1.7.1/src/org/biojava/bio/program/indexdb/BioStore.java:239: KeyPair ==> key pair
data/biojava-live-1.7.1/src/org/biojava/bio/program/indexdb/BioStore.java:240: keyPair ==> key pair
data/biojava-live-1.7.1/src/org/biojava/bio/program/indexdb/BioStore.java:261: KeyPair ==> key pair
data/biojava-live-1.7.1/src/org/biojava/bio/program/indexdb/KeyPair.java:25: KeyPair ==> key pair
data/biojava-live-1.7.1/src/org/biojava/bio/program/indexdb/KeyPair.java:31: KeyPair ==> key pair
data/biojava-live-1.7.1/src/org/biojava/bio/program/indexdb/KeyPair.java:52: KeyPair ==> key pair
data/biojava-live-1.7.1/src/org/biojava/bio/program/indexdb/SearchableList.java:27: Commitable ==> Committable
data/biojava-live-1.7.1/src/org/biojava/bio/program/indexdb/SearchableList.java:40: Commitable ==> Committable
data/biojava-live-1.7.1/src/org/biojava/bio/program/indexdb/package.html:5: adresses ==> addresses
data/biojava-live-1.7.1/src/org/biojava/bio/program/indexdb/package.html:14: feasable ==> feasible
data/biojava-live-1.7.1/src/org/biojava/bio/program/indexdb/IndexTools.java:262: delimeter ==> delimiter
data/biojava-live-1.7.1/src/org/biojava/bio/program/indexdb/IndexTools.java:263: delimeter ==> delimiter
data/biojava-live-1.7.1/src/org/biojava/bio/program/indexdb/IndexTools.java:266: delimeter ==> delimiter
data/biojava-live-1.7.1/src/org/biojava/bio/program/indexdb/SecondaryFileAsList.java:61: KeyPair ==> key pair
data/biojava-live-1.7.1/src/org/biojava/bio/program/indexdb/SecondaryFileAsList.java:65: KeyPair ==> key pair
data/biojava-live-1.7.1/src/org/biojava/bio/program/indexdb/SecondaryFileAsList.java:65: KeyPair ==> key pair
data/biojava-live-1.7.1/src/org/biojava/bio/program/indexdb/CacheList.java:31: Commitable ==> Committable
data/biojava-live-1.7.1/src/org/biojava/bio/program/indexdb/CacheList.java:101: Commitable ==> Committable
data/biojava-live-1.7.1/src/org/biojava/bio/program/indexdb/CacheList.java:105: Commitable ==> Committable
data/biojava-live-1.7.1/src/org/biojava/bio/program/gff/GFFDocumentHandler.java:33: handeler ==> handler
data/biojava-live-1.7.1/src/org/biojava/bio/program/gff/GFFTools.java:141: untill ==> until
data/biojava-live-1.7.1/src/org/biojava/bio/program/gff/GFFTools.java:158: untill ==> until
data/biojava-live-1.7.1/src/org/biojava/bio/program/gff/GFFTools.java:312: featre ==> feature
data/biojava-live-1.7.1/src/org/biojava/bio/program/gff/GFFRecord.java:53: usualy ==> usually
data/biojava-live-1.7.1/src/org/biojava/bio/program/gff/GFFRecord.java:62: usualy ==> usually
data/biojava-live-1.7.1/src/org/biojava/bio/program/gff/GFFEntrySet.java:145: featur ==> feature
data/biojava-live-1.7.1/src/org/biojava/bio/program/gff/GFFEntrySet.java:240: recieves ==> receives
data/biojava-live-1.7.1/src/org/biojava/bio/program/gff/GFFFilterer.java:40: recieve ==> receive
data/biojava-live-1.7.1/src/org/biojava/bio/program/das/DASRawSymbolList.java:210: toke ==> took
data/biojava-live-1.7.1/src/org/biojava/bio/program/das/DASRawSymbolList.java:212: toke ==> took
data/biojava-live-1.7.1/src/org/biojava/bio/program/das/DASRawSymbolList.java:216: toke ==> took
data/biojava-live-1.7.1/src/org/biojava/bio/program/das/DASRawSymbolList.java:230: toke ==> took
data/biojava-live-1.7.1/src/org/biojava/bio/program/das/DASRawSymbolList.java:232: toke ==> took
data/biojava-live-1.7.1/src/org/biojava/bio/program/das/DASRawSymbolList.java:236: toke ==> took
data/biojava-live-1.7.1/src/org/biojava/bio/program/das/DASSequence.java:224: Wierd ==> Weird
data/biojava-live-1.7.1/src/org/biojava/bio/program/das/DASSequence.java:736: usualy ==> usually
data/biojava-live-1.7.1/src/org/biojava/bio/program/das/DASFeatureSet.java:323: recieving ==> receiving
data/biojava-live-1.7.1/src/org/biojava/bio/program/das/DASFeatureSet.java:460: Missmatched ==> Mismatched
data/biojava-live-1.7.1/src/org/biojava/bio/program/das/dasstructure/DASStructureCall.java:107: retreive ==> retrieve
data/biojava-live-1.7.1/src/org/biojava/bio/program/das/dasalignment/DASAlignmentCall.java:88: retreive ==> retrieve
data/biojava-live-1.7.1/src/org/biojava/bio/program/das/dasalignment/DASAlignmentCall.java:117: retreive ==> retrieve
data/biojava-live-1.7.1/src/org/biojava/bio/program/formats/Ligand.java:99: realy ==> really
data/biojava-live-1.7.1/src/org/biojava/bio/program/formats/Format.java:30: buring ==> burying, burning, burin, during
data/biojava-live-1.7.1/src/org/biojava/bio/program/formats/Format.java:32: usefull ==> useful
data/biojava-live-1.7.1/src/org/biojava/bio/program/formats/Format.java:43: somethign ==> something
data/biojava-live-1.7.1/src/org/biojava/bio/program/formats/Format.java:49: dynamicaly ==> dynamically
data/biojava-live-1.7.1/src/org/biojava/bio/program/formats/Format.java:50: componets ==> components
data/biojava-live-1.7.1/src/org/biojava/bio/program/formats/Format.java:65: recomends ==> recommends
data/biojava-live-1.7.1/src/org/biojava/bio/program/formats/Format.java:65: taht ==> that
data/biojava-live-1.7.1/src/org/biojava/bio/program/formats/FormatTools.java:31: identifer ==> identifier
data/biojava-live-1.7.1/src/org/biojava/bio/program/formats/FormatTools.java:54: Stirng ==> String
data/biojava-live-1.7.1/src/org/biojava/bio/program/formats/FormatTools.java:60: somethign ==> something
data/biojava-live-1.7.1/src/org/biojava/bio/program/formats/FormatTools.java:61: probaby ==> probably
data/biojava-live-1.7.1/src/org/biojava/bio/program/blast2html/Blast2HTMLHandler.java:293: relavent ==> relevant
data/biojava-live-1.7.1/src/org/biojava/bio/program/blast2html/Blast2HTMLHandler.java:294: relavent ==> relevant
data/biojava-live-1.7.1/src/org/biojava/bio/program/blast2html/BlastMatrixAlignmentStyler.java:124: chatacters ==> characters
data/biojava-live-1.7.1/src/org/biojava/bio/program/blast2html/EbiDatabaseURLGenerator.java:27: upto ==> up to
data/biojava-live-1.7.1/src/org/biojava/bio/program/blast2html/HTMLRenderer.java:524: ot ==> to, of, or
data/biojava-live-1.7.1/src/org/biojava/bio/program/blast2html/AlignmentMarker.java:46: implemention ==> implementation
data/biojava-live-1.7.1/src/org/biojava/bio/program/unigene/SQLUnigeneFactory.java:11: implementatoin ==> implementation
data/biojava-live-1.7.1/src/org/biojava/bio/program/unigene/SQLUnigeneFactory.java:20: realy ==> really
data/biojava-live-1.7.1/src/org/biojava/bio/program/unigene/UnigeneFactory.java:14: potentialy ==> potentially
data/biojava-live-1.7.1/src/org/biojava/bio/program/unigene/FlatFileUnigeneFactory.java:44: opperation ==> operation
data/biojava-live-1.7.1/src/org/biojava/bio/program/unigene/UnigeneTools.java:32: Usefull ==> Useful
data/biojava-live-1.7.1/src/org/biojava/bio/program/unigene/UnigeneTools.java:36: Additionaly ==> Additionally
data/biojava-live-1.7.1/src/org/biojava/bio/program/ssbind/SeqSimilarityStAXAdapter.java:137: recieve ==> receive
data/biojava-live-1.7.1/src/org/biojava/bio/program/ssbind/SeqSimilarityStAXAdapter.java:150: progam ==> program
data/biojava-live-1.7.1/src/org/biojava/bio/program/ssbind/SeqSimilarityStAXAdapter.java:162: progam ==> program
data/biojava-live-1.7.1/src/org/biojava/bio/program/ssbind/SeqSimilarityAdapter.java:56: recieve ==> receive
data/biojava-live-1.7.1/src/org/biojava/bio/program/ssbind/SeqSimilarityAdapter.java:67: recieve ==> receive
data/biojava-live-1.7.1/src/org/biojava/bio/program/ssbind/SeqSimilarityAdapter.java:143: progam ==> program
data/biojava-live-1.7.1/src/org/biojava/bio/program/ssbind/SeqSimilarityAdapter.java:155: progam ==> program
data/biojava-live-1.7.1/src/org/biojava/bio/program/gff3/GFF3DocumentHandler.java:33: handeler ==> handler
data/biojava-live-1.7.1/src/org/biojava/bio/program/gff3/GFF3Parser.java:221: te ==> the, be, we
data/biojava-live-1.7.1/src/org/biojava/bio/program/gff3/GFF3Parser.java:222: te ==> the, be, we
data/biojava-live-1.7.1/src/org/biojava/bio/program/gff3/GFF3Parser.java:240: te ==> the, be, we
data/biojava-live-1.7.1/src/org/biojava/bio/program/gff3/GFF3Parser.java:241: te ==> the, be, we
data/biojava-live-1.7.1/src/org/biojava/bio/program/gff3/GFF3Parser.java:381: te ==> the, be, we
data/biojava-live-1.7.1/src/org/biojava/bio/program/gff3/GFF3Parser.java:382: te ==> the, be, we
data/biojava-live-1.7.1/src/org/biojava/bio/program/sax/HitSectionSAXParser.java:131: interupted ==> interrupted
data/biojava-live-1.7.1/src/org/biojava/bio/program/sax/HitSectionSAXParser.java:146: intial ==> initial
data/biojava-live-1.7.1/src/org/biojava/bio/program/sax/HitSectionSAXParser.java:291: interupted ==> interrupted
data/biojava-live-1.7.1/src/org/biojava/bio/program/sax/HitSectionSAXParser.java:306: intial ==> initial
data/biojava-live-1.7.1/src/org/biojava/bio/program/sax/HitSectionSAXParser.java:400: outputing ==> outputting
data/biojava-live-1.7.1/src/org/biojava/bio/program/sax/BlastLikeSAXParser.java:35: notifcation ==> notification
data/biojava-live-1.7.1/src/org/biojava/bio/program/sax/BlastLikeSAXParser.java:78: releated ==> related
data/biojava-live-1.7.1/src/org/biojava/bio/program/sax/SequenceAlignmentSAXParser.java:96: interupted ==> interrupted
data/biojava-live-1.7.1/src/org/biojava/bio/program/sax/DomainSectionSAXParser.java:229: interupted ==> interrupted
data/biojava-live-1.7.1/src/org/biojava/bio/program/sax/FastaSearchSAXParser.java:176: identifer ==> identifier
data/biojava-live-1.7.1/src/org/biojava/bio/program/sax/NeedleAlignmentSAXParser.java:36: outputing ==> outputting
data/biojava-live-1.7.1/src/org/biojava/bio/program/sax/NeedleAlignmentSAXParser.java:152: interupted ==> interrupted
data/biojava-live-1.7.1/src/org/biojava/bio/program/sax/NeedleAlignmentSAXParser.java:199: aligment ==> alignment
data/biojava-live-1.7.1/src/org/biojava/bio/program/sax/NeedleAlignmentSAXParser.java:226: Postions ==> Positions
data/biojava-live-1.7.1/src/org/biojava/bio/program/sax/NeedleAlignmentSAXParser.java:241: occurence ==> occurrence
data/biojava-live-1.7.1/src/org/biojava/bio/program/sax/HmmerAlignmentSAXParser.java:31: Aligment ==> Alignment
data/biojava-live-1.7.1/src/org/biojava/bio/program/sax/HmmerAlignmentSAXParser.java:77: aligments ==> alignments
data/biojava-live-1.7.1/src/org/biojava/bio/program/sax/HmmerAlignmentSAXParser.java:131: oFrom ==> from
data/biojava-live-1.7.1/src/org/biojava/bio/program/sax/HmmerAlignmentSAXParser.java:173: oFrom ==> from
data/biojava-live-1.7.1/src/org/biojava/bio/program/sax/HmmerAlignmentSAXParser.java:174: oFrom ==> from
data/biojava-live-1.7.1/src/org/biojava/bio/program/sax/HmmerAlignmentSAXParser.java:229: aligment ==> alignment
data/biojava-live-1.7.1/src/org/biojava/bio/program/sax/HmmerAlignmentSAXParser.java:230: positivies ==> positives
data/biojava-live-1.7.1/src/org/biojava/bio/program/sax/HmmerAlignmentSAXParser.java:391: oFrom ==> from
data/biojava-live-1.7.1/src/org/biojava/bio/program/sax/HmmerAlignmentSAXParser.java:464: interupted ==> interrupted
data/biojava-live-1.7.1/src/org/biojava/bio/program/sax/SimpleXMLEmitterTestHelper.java:33: accidently ==> accidentally
data/biojava-live-1.7.1/src/org/biojava/bio/program/sax/PdbSAXParser.java:122: CONECT ==> CONNECT
data/biojava-live-1.7.1/src/org/biojava/bio/program/sax/PdbSAXParser.java:287: interupted ==> interrupted
data/biojava-live-1.7.1/src/org/biojava/bio/program/sax/PdbSAXParser.java:344: varables ==> variables
data/biojava-live-1.7.1/src/org/biojava/bio/program/sax/PdbSAXParser.java:497: characers ==> characters
data/biojava-live-1.7.1/src/org/biojava/bio/program/sax/BlastSAXParser.java:200: summmary ==> summary
data/biojava-live-1.7.1/src/org/biojava/bio/program/sax/BlastSAXParser.java:362: initialse ==> initialise, initialize
data/biojava-live-1.7.1/src/org/biojava/bio/program/sax/FastaSequenceSAXParser.java:115: interupted ==> interrupted
data/biojava-live-1.7.1/src/org/biojava/bio/program/sax/GCGBlastSummaryLineHelper.java:144: initalize ==> initialize
data/biojava-live-1.7.1/src/org/biojava/bio/program/sax/AbstractNativeAppSAXParser.java:56: implmentation ==> implementation
data/biojava-live-1.7.1/src/org/biojava/bio/program/sax/AbstractNativeAppSAXParser.java:57: Utilty ==> Utility
data/biojava-live-1.7.1/src/org/biojava/bio/program/sax/ClustalWAlignmentSAXParser.java:36: outputing ==> outputting
data/biojava-live-1.7.1/src/org/biojava/bio/program/sax/ClustalWAlignmentSAXParser.java:173: aligment ==> alignment
data/biojava-live-1.7.1/src/org/biojava/bio/program/sax/ClustalWAlignmentSAXParser.java:203: occurence ==> occurrence
data/biojava-live-1.7.1/src/org/biojava/bio/program/sax/blastxml/BlastXMLParser.java:55: editted ==> edited
data/biojava-live-1.7.1/src/org/biojava/bio/program/sax/blastxml/BlastOutputHandler.java:52: editted ==> edited
data/biojava-live-1.7.1/src/org/biojava/bio/program/ssaha/NIODataStore.java:141: dissapeared ==> disappeared
data/biojava-live-1.7.1/src/org/biojava/bio/program/ssaha/NIODataStoreFactory.java:29: indecies ==> indices
data/biojava-live-1.7.1/src/org/biojava/bio/program/ssaha/NIODataStoreFactory.java:30: internaly ==> internally
data/biojava-live-1.7.1/src/org/biojava/bio/program/ssaha/NIODataStoreFactory.java:221: initialy ==> initially
data/biojava-live-1.7.1/src/org/biojava/bio/program/ssaha/CompactedDataStore.java:166: dissapeared ==> disappeared
data/biojava-live-1.7.1/src/org/biojava/bio/program/ssaha/CompactedDataStoreFactory.java:254: initialy ==> initially
data/biojava-live-1.7.1/src/org/biojava/bio/program/ssaha/package.html:14: Finaly ==> Finally, finale
data/biojava-live-1.7.1/src/org/biojava/bio/program/ssaha/package.html:14: potentialy ==> potentially
data/biojava-live-1.7.1/src/org/biojava/bio/program/ssaha/SearchListener.java:95: usefull ==> useful
data/biojava-live-1.7.1/src/org/biojava/bio/program/ssaha/SequenceStreamer.java:89: toke ==> took
data/biojava-live-1.7.1/src/org/biojava/bio/program/ssaha/SequenceStreamer.java:93: toke ==> took
data/biojava-live-1.7.1/src/org/biojava/bio/program/ssaha/SequenceStreamer.java:96: toke ==> took
data/biojava-live-1.7.1/src/org/biojava/bio/program/ssaha/SequenceStreamer.java:96: toke ==> took
data/biojava-live-1.7.1/src/org/biojava/bio/program/ssaha/SequenceStreamer.java:100: toke ==> took
data/biojava-live-1.7.1/src/org/biojava/bio/program/ssaha/SequenceStreamer.java:101: toke ==> took
data/biojava-live-1.7.1/src/org/biojava/bio/program/ssaha/SequenceStreamer.java:119: toke ==> took
data/biojava-live-1.7.1/src/org/biojava/bio/program/ssaha/MappedDataStore.java:151: dissapeared ==> disappeared
data/biojava-live-1.7.1/src/org/biojava/bio/program/ssaha/MappedDataStoreFactory.java:229: initialy ==> initially
data/biojava-live-1.7.1/src/org/biojava/bio/proteomics/MassCalc.java:114: realy ==> really
data/biojava-live-1.7.1/src/org/biojava/bio/proteomics/MassCalc.java:181: toke ==> took
data/biojava-live-1.7.1/src/org/biojava/bio/proteomics/MassCalc.java:184: toke ==> took
data/biojava-live-1.7.1/src/org/biojava/bio/proteomics/MassCalc.java:189: toke ==> took
data/biojava-live-1.7.1/src/org/biojava/bio/proteomics/MassCalc.java:230: assocaited ==> associated
data/biojava-live-1.7.1/src/org/biojava/bio/proteomics/MassCalc.java:240: assocaited ==> associated
data/biojava-live-1.7.1/src/org/biojava/bio/proteomics/MassCalc.java:503: toke ==> took
data/biojava-live-1.7.1/src/org/biojava/bio/proteomics/MassCalc.java:505: toke ==> took
data/biojava-live-1.7.1/src/org/biojava/bio/proteomics/MassCalc.java:510: toke ==> took
data/biojava-live-1.7.1/src/org/biojava/bio/proteomics/ProteaseManager.java:200: sensistive ==> sensitive
data/biojava-live-1.7.1/src/org/biojava/bio/proteomics/ProteaseManager.java:279: retreive ==> retrieve
data/biojava-live-1.7.1/src/org/biojava/bio/proteomics/ProteaseManager.java:291: retreive ==> retrieve
data/biojava-live-1.7.1/src/org/biojava/bio/proteomics/ProteaseManager.java:303: retreive ==> retrieve
data/biojava-live-1.7.1/src/org/biojava/bio/proteomics/ProteaseManager.java:315: retreive ==> retrieve
data/biojava-live-1.7.1/src/org/biojava/bio/proteomics/ProteaseManager.java:327: retreive ==> retrieve
data/biojava-live-1.7.1/src/org/biojava/bio/proteomics/ProteaseManager.java:339: retreive ==> retrieve
data/biojava-live-1.7.1/src/org/biojava/bio/proteomics/ProteaseManager.java:351: retreive ==> retrieve
data/biojava-live-1.7.1/src/org/biojava/bio/proteomics/ProteaseManager.java:363: retreive ==> retrieve
data/biojava-live-1.7.1/src/org/biojava/bio/proteomics/aaindex/AAindex.java:103: commments ==> comments
data/biojava-live-1.7.1/src/org/biojava/bio/proteomics/aaindex/AAindexStreamReader.java:45: informations ==> information
data/biojava-live-1.7.1/src/org/biojava/ontology/Ontology.java:133: usefull ==> useful
data/biojava-live-1.7.1/src/org/biojava/ontology/Ontology.java:222: orriginal ==> original
data/biojava-live-1.7.1/src/org/biojava/ontology/Ontology.java:295: instanciated ==> instantiated
data/biojava-live-1.7.1/src/org/biojava/ontology/Ontology.java:478: ot ==> to, of, or
data/biojava-live-1.7.1/src/org/biojava/ontology/Ontology.java:479: ot ==> to, of, or
data/biojava-live-1.7.1/src/org/biojava/ontology/Ontology.java:480: ot ==> to, of, or
data/biojava-live-1.7.1/src/org/biojava/ontology/OntologyTerm.java:83: targetted ==> targeted
data/biojava-live-1.7.1/src/org/biojava/ontology/OntoTools.java:132: arithmatic ==> arithmetic
data/biojava-live-1.7.1/src/org/biojava/ontology/io/GOParser.java:70: toke ==> took
data/biojava-live-1.7.1/src/org/biojava/ontology/io/GOParser.java:71: toke ==> took
data/biojava-live-1.7.1/src/org/biojava/ontology/io/GOParser.java:72: toke ==> took
data/biojava-live-1.7.1/src/org/biojava/ontology/io/GOParser.java:78: toke ==> took
data/biojava-live-1.7.1/src/org/biojava/ontology/io/GOParser.java:79: toke ==> took
data/biojava-live-1.7.1/src/org/biojava/ontology/io/GOParser.java:80: toke ==> took
data/biojava-live-1.7.1/src/org/biojava/ontology/io/GOParser.java:127: toke ==> took
data/biojava-live-1.7.1/src/org/biojava/ontology/io/GOParser.java:128: toke ==> took
data/biojava-live-1.7.1/src/org/biojava/ontology/io/GOParser.java:133: toke ==> took
data/biojava-live-1.7.1/src/org/biojava/ontology/io/GOParser.java:135: toke ==> took
data/biojava-live-1.7.1/src/org/biojava/ontology/io/GOParser.java:136: toke ==> took
data/biojava-live-1.7.1/src/org/biojava/ontology/io/TabDelimParser.java:22: seperated ==> separated
data/biojava-live-1.7.1/src/org/biojava/ontology/io/TabDelimParser.java:105: tripple ==> triple
data/biojava-live-1.7.1/src/org/biojava/ontology/io/TabDelimParser.java:118: toke ==> took
data/biojava-live-1.7.1/src/org/biojava/ontology/io/TabDelimParser.java:119: toke ==> took
data/biojava-live-1.7.1/src/org/biojava/ontology/io/TabDelimParser.java:120: toke ==> took
data/biojava-live-1.7.1/src/org/biojava/ontology/io/TabDelimParser.java:121: toke ==> took
data/biojava-live-1.7.1/src/org/biojava/bibliography/BiblioScope.java:34: co-ordinates ==> coordinates
data/biojava-live-1.7.1/src/org/biojava/bibliography/package.html:20: theses ==> these, thesis
data/biojava-live-1.7.1/src/org/biojava/bibliography/BibRefException.java:4: communciation ==> communication
data/biojava-live-1.7.1/src/org/biojava/bibliography/BibRefException.java:33: cuase ==> cause
data/biojava-live-1.7.1/src/org/biojava/bibliography/BibRefSupport.java:52: raison ==> reason, raisin
data/biojava-live-1.7.1/src/org/biojava/bibliography/BibRefSupport.java:289: interace ==> interface
data/biojava-live-1.7.1/src/org/biojava/bibliography/BibRefSupport.java:422: raison ==> reason, raisin
data/biojava-live-1.7.1/src/org/biojava/bibliography/BibRef.java:150: crossReferences ==> cross-references
data/biojava-live-1.7.1/src/org/biojava/bibliography/BibRef.java:171: co-ordinates ==> coordinates
data/biojava-live-1.7.1/src/org/biojava/bibliography/BibRef.java:304: reosurce ==> resource
data/biojava-live-1.7.1/src/org/biojava/stats/package.html:5: independant ==> independent
data/biojava-live-1.7.1/src/org/biojava/stats/svm/SparseVector.java:101: paranoya ==> paranoia
data/biojava-live-1.7.1/src/org/biojava/stats/svm/SparseVector.java:230: performes ==> performed, performs
data/biojava-live-1.7.1/src/org/biojava/stats/svm/SparseVector.java:235: Retrive ==> Retrieve
data/biojava-live-1.7.1/src/org/biojava/stats/svm/LinearKernel.java:28: actualy ==> actually
data/biojava-live-1.7.1/src/org/biojava/stats/svm/SMORegressionTrainer.java:86: finnished ==> finished
data/biojava-live-1.7.1/src/org/biojava/stats/svm/SMORegressionTrainer.java:88: finnished ==> finished
data/biojava-live-1.7.1/src/org/biojava/stats/svm/SMORegressionTrainer.java:102: finnished ==> finished
data/biojava-live-1.7.1/src/org/biojava/stats/svm/SMORegressionTrainer.java:130: finnished ==> finished
data/biojava-live-1.7.1/src/org/biojava/stats/svm/SMORegressionTrainer.java:160: finnished ==> finished
data/biojava-live-1.7.1/src/org/biojava/stats/svm/SMORegressionTrainer.java:192: finnished ==> finished
data/biojava-live-1.7.1/src/org/biojava/stats/svm/SMORegressionTrainer.java:222: finnished ==> finished
data/biojava-live-1.7.1/src/org/biojava/stats/svm/SMORegressionTrainer.java:226: finnished ==> finished
data/biojava-live-1.7.1/src/org/biojava/stats/svm/SMORegressionTrainer.java:291: Successfuly ==> Successfully
data/biojava-live-1.7.1/src/org/biojava/stats/svm/SMORegressionTrainer.java:342: huristic ==> heuristic
data/biojava-live-1.7.1/src/org/biojava/stats/svm/SMORegressionTrainer.java:358: huristic ==> heuristic
data/biojava-live-1.7.1/src/org/biojava/stats/svm/RadialBaseKernel.java:26: gausian ==> gaussian
data/biojava-live-1.7.1/src/org/biojava/stats/svm/tools/SuffixTreeKernel.java:141: probablistic ==> probabilistic
data/biojava-live-1.7.1/src/org/biojava/stats/svm/tools/ClassifierExample.java:69: seperate ==> separate
data/biojava-live-1.7.1/src/org/biojava/stats/svm/tools/ClassifierExample.java:93: postive ==> positive
data/biojava-live-1.7.1/src/org/biojava/stats/svm/tools/ClassifierExample.java:150: extention ==> extension
data/biojava-live-1.7.1/src/org/biojava/stats/svm/tools/ClassifierExample.java:228: wether ==> weather, whether
data/biojava-live-1.7.1/src/org/biojava/stats/svm/tools/SVM_Light.java:90: toke ==> took
data/biojava-live-1.7.1/src/org/biojava/stats/svm/tools/SVM_Light.java:91: toke ==> took
data/biojava-live-1.7.1/src/org/biojava/stats/svm/tools/SVM_Light.java:93: toke ==> took
data/biojava-live-1.7.1/src/org/biojava/stats/svm/tools/SVM_Light.java:95: toke ==> took
data/biojava-live-1.7.1/src/org/biojava/stats/svm/tools/SVM_Light.java:96: toke ==> took
data/biojava-live-1.7.1/src/org/biojava/utils/ChangeListener.java:57: recomended ==> recommended
data/biojava-live-1.7.1/src/org/biojava/utils/ChangeListener.java:86: occured ==> occurred
data/biojava-live-1.7.1/src/org/biojava/utils/AssertionFailure.java:16: usualy ==> usually
data/biojava-live-1.7.1/src/org/biojava/utils/AssertionFailure.java:25: opperation ==> operation
data/biojava-live-1.7.1/src/org/biojava/utils/Commitable.java:25: Commitable ==> Committable
data/biojava-live-1.7.1/src/org/biojava/utils/Commitable.java:32: Commitable ==> Committable
data/biojava-live-1.7.1/src/org/biojava/utils/JDBCConnectionPool.java:53: propper ==> proper
data/biojava-live-1.7.1/src/org/biojava/utils/ProcessTools.java:286: occured ==> occurred
data/biojava-live-1.7.1/src/org/biojava/utils/SmallSet.java:32: recomended ==> recommended
data/biojava-live-1.7.1/src/org/biojava/utils/ChangeType.java:78: occured ==> occurred
data/biojava-live-1.7.1/src/org/biojava/utils/ChangeType.java:80: realy ==> really
data/biojava-live-1.7.1/src/org/biojava/utils/Constants.java:24: usefull ==> useful
data/biojava-live-1.7.1/src/org/biojava/utils/FileAsList.java:50: Commitable ==> Committable
data/biojava-live-1.7.1/src/org/biojava/utils/MergingSet.java:19: seccond ==> second
data/biojava-live-1.7.1/src/org/biojava/utils/MergingSet.java:23: seccond ==> second
data/biojava-live-1.7.1/src/org/biojava/utils/ExecRunner.java:633: Maximim ==> Maximum
data/biojava-live-1.7.1/src/org/biojava/utils/ParserException.java:149: occured ==> occurred
data/biojava-live-1.7.1/src/org/biojava/utils/ParserException.java:170: occured ==> occurred
data/biojava-live-1.7.1/src/org/biojava/utils/ParserException.java:182: occured ==> occurred
data/biojava-live-1.7.1/src/org/biojava/utils/ChangeVetoException.java:81: Propogate ==> Propagate
data/biojava-live-1.7.1/src/org/biojava/utils/ChangeVetoException.java:93: Propogate ==> Propagate
data/biojava-live-1.7.1/src/org/biojava/utils/ChangeVetoException.java:109: Propogate ==> Propagate
data/biojava-live-1.7.1/src/org/biojava/utils/Changeable.java:73: incase ==> in case
data/biojava-live-1.7.1/src/org/biojava/utils/io/LargeBuffer.java:10: arround ==> around
data/biojava-live-1.7.1/src/org/biojava/utils/walker/Walker.java:27: visting ==> visiting
data/biojava-live-1.7.1/src/org/biojava/utils/walker/Visitor.java:47: potentialy ==> potentially
data/biojava-live-1.7.1/src/org/biojava/utils/walker/Visitor.java:68: usefull ==> useful
data/biojava-live-1.7.1/src/org/biojava/utils/walker/WalkerFactory.java:2: particuar ==> particular
data/biojava-live-1.7.1/src/org/biojava/utils/walker/WalkerFactory.java:175: captial ==> capital
data/biojava-live-1.7.1/src/org/biojava/utils/walker/WalkerFactory.java:420: intialize ==> initialize
data/biojava-live-1.7.1/src/org/biojava/utils/xml/PrettyXMLWriter.java:131: alloced ==> allocated
data/biojava-live-1.7.1/src/org/biojava/utils/xml/PrettyXMLWriter.java:135: alloced ==> allocated
data/biojava-live-1.7.1/src/org/biojava/utils/xml/PrettyXMLWriter.java:141: alloced ==> allocated
data/biojava-live-1.7.1/src/org/biojava/utils/xml/ResourceEntityResolver.java:49: toke ==> took
data/biojava-live-1.7.1/src/org/biojava/utils/xml/ResourceEntityResolver.java:50: toke ==> took
data/biojava-live-1.7.1/src/org/biojava/utils/xml/ResourceEntityResolver.java:51: toke ==> took
data/biojava-live-1.7.1/src/org/biojava/utils/xml/XMLWriter.java:54: independantly ==> independently
data/biojava-live-1.7.1/src/org/biojava/utils/xml/XMLWriter.java:115: guarentee ==> guarantee
data/biojava-live-1.7.1/src/org/biojava/utils/xml/XMLBeans.java:83: intantiate ==> instantiate
data/biojava-live-1.7.1/src/org/biojava/utils/regex/PatternChecker.java:127: toke ==> took
data/biojava-live-1.7.1/src/org/biojava/utils/regex/PatternChecker.java:150: toke ==> took
data/biojava-live-1.7.1/src/org/biojava/utils/regex/PatternChecker.java:159: toke ==> took
data/biojava-live-1.7.1/src/org/biojava/utils/regex/PatternChecker.java:160: toke ==> took
data/biojava-live-1.7.1/src/org/biojava/utils/regex/PatternChecker.java:165: toke ==> took
data/biojava-live-1.7.1/src/org/biojava/utils/regex/PatternChecker.java:167: toke ==> took
data/biojava-live-1.7.1/src/org/biojava/utils/regex/PatternChecker.java:167: toke ==> took
data/biojava-live-1.7.1/src/org/biojava/utils/regex/PatternChecker.java:182: toke ==> took
data/biojava-live-1.7.1/src/org/biojava/utils/regex/PatternChecker.java:195: toke ==> took
data/biojava-live-1.7.1/src/org/biojava/utils/regex/PatternChecker.java:208: toke ==> took
data/biojava-live-1.7.1/src/org/biojava/utils/regex/PatternChecker.java:220: toke ==> took
data/biojava-live-1.7.1/src/org/biojava/utils/regex/PatternChecker.java:221: toke ==> took
data/biojava-live-1.7.1/src/org/biojava/utils/regex/PatternChecker.java:269: toke ==> took
data/biojava-live-1.7.1/src/org/biojava/utils/regex/PatternChecker.java:276: toke ==> took
data/biojava-live-1.7.1/src/org/biojava/utils/regex/PatternChecker.java:279: toke ==> took
data/biojava-live-1.7.1/src/org/biojava/utils/regex/PatternChecker.java:282: toke ==> took
data/biojava-live-1.7.1/src/org/biojava/utils/regex/PatternChecker.java:288: toke ==> took
data/biojava-live-1.7.1/src/org/biojava/utils/regex/PatternChecker.java:289: toke ==> took
data/biojava-live-1.7.1/src/org/biojava/utils/regex/PatternChecker.java:297: toke ==> took
data/biojava-live-1.7.1/src/org/biojava/utils/regex/PatternChecker.java:304: toke ==> took
data/biojava-live-1.7.1/src/org/biojava/utils/regex/PatternChecker.java:305: toke ==> took
data/biojava-live-1.7.1/src/org/biojava/utils/regex/PatternChecker.java:311: toke ==> took
data/biojava-live-1.7.1/src/org/biojava/utils/regex/PatternChecker.java:313: toke ==> took
data/biojava-live-1.7.1/src/org/biojava/utils/regex/PatternChecker.java:315: toke ==> took
data/biojava-live-1.7.1/src/org/biojava/utils/regex/PatternChecker.java:320: toke ==> took
data/biojava-live-1.7.1/src/org/biojava/utils/regex/PatternChecker.java:325: toke ==> took
data/biojava-live-1.7.1/src/org/biojava/utils/regex/PatternChecker.java:328: toke ==> took
data/biojava-live-1.7.1/src/org/biojava/utils/regex/PatternChecker.java:337: toke ==> took
data/biojava-live-1.7.1/src/org/biojava/utils/regex/PatternChecker.java:339: toke ==> took
data/biojava-live-1.7.1/src/org/biojava/utils/regex/PatternChecker.java:341: toke ==> took
data/biojava-live-1.7.1/src/org/biojava/utils/regex/PatternChecker.java:360: toke ==> took
data/biojava-live-1.7.1/src/org/biojava/utils/regex/PatternChecker.java:360: toke ==> took
data/biojava-live-1.7.1/src/org/biojava/utils/regex/PatternChecker.java:361: toke ==> took
data/biojava-live-1.7.1/src/org/biojava/utils/regex/Matcher.java:100: emtpy ==> empty
data/biojava-live-1.7.1/src/org/biojava/utils/regex/PatternFactory.java:30: toke ==> took
data/biojava-live-1.7.1/src/org/biojava/utils/regex/PatternFactory.java:43: toke ==> took
data/biojava-live-1.7.1/src/org/biojava/utils/regex/PatternFactory.java:44: toke ==> took
data/biojava-live-1.7.1/src/org/biojava/utils/regex/PatternFactory.java:73: toke ==> took
data/biojava-live-1.7.1/src/org/biojava/utils/regex/PatternFactory.java:124: toke ==> took
data/biojava-live-1.7.1/src/org/biojava/utils/regex/Search.java:25: recieve ==> receive
data/biojava-live-1.7.1/src/org/biojava/utils/candy/CandyEntry.java:39: accomodate ==> accommodate
data/biojava-live-1.7.1/src/org/biojava/utils/automata/FiniteAutomaton.java:298: toke ==> took
data/biojava-live-1.7.1/src/org/biojava/utils/automata/FiniteAutomaton.java:303: toke ==> took
data/biojava-live-1.7.1/src/org/biojava/utils/automata/PatternMaker.java:18: toke ==> took
data/biojava-live-1.7.1/src/org/biojava/utils/automata/PatternMaker.java:135: toke ==> took
data/biojava-live-1.7.1/src/org/biojava/utils/automata/PatternMaker.java:183: toke ==> took
data/biojava-live-1.7.1/src/org/biojava/utils/automata/PatternMaker.java:184: toke ==> took
data/biojava-live-1.7.1/src/org/biojava/utils/automata/PatternMaker.java:190: toke ==> took
data/biojava-live-1.7.1/src/org/biojava/utils/automata/PatternMaker.java:198: toke ==> took
data/biojava-live-1.7.1/src/org/biojava/utils/automata/PatternMaker.java:208: toke ==> took
data/biojava-live-1.7.1/src/org/biojava/utils/automata/PatternMaker.java:222: toke ==> took
data/biojava-live-1.7.1/src/org/biojava/utils/automata/PatternMaker.java:225: toke ==> took
data/biojava-live-1.7.1/src/org/biojava/utils/automata/PatternMaker.java:237: toke ==> took
data/biojava-live-1.7.1/src/org/biojava/utils/automata/PatternMaker.java:262: toke ==> took
data/biojava-live-1.7.1/src/org/biojava/utils/automata/PatternMaker.java:265: toke ==> took
data/biojava-live-1.7.1/src/org/biojava/utils/automata/PatternMaker.java:268: toke ==> took
data/biojava-live-1.7.1/src/org/biojava/utils/automata/PatternMaker.java:280: toke ==> took
data/biojava-live-1.7.1/src/org/biojava/utils/automata/PatternMaker.java:310: toke ==> took
data/biojava-live-1.7.1/src/org/biojava/utils/automata/PatternMaker.java:316: toke ==> took
data/biojava-live-1.7.1/src/org/biojava/utils/automata/PatternMaker.java:319: toke ==> took
data/biojava-live-1.7.1/src/org/biojava/utils/automata/PatternMaker.java:334: toke ==> took
data/biojava-live-1.7.1/src/org/biojava/utils/automata/PatternMaker.java:340: toke ==> took
data/biojava-live-1.7.1/src/org/biojava/utils/automata/PatternMaker.java:341: toke ==> took
data/biojava-live-1.7.1/src/org/biojava/utils/automata/PatternMaker.java:347: toke ==> took
data/biojava-live-1.7.1/src/org/biojava/utils/automata/PatternMaker.java:350: toke ==> took
data/biojava-live-1.7.1/src/org/biojava/utils/automata/PatternMaker.java:365: toke ==> took
data/biojava-live-1.7.1/src/org/biojava/utils/automata/PatternMaker.java:377: toke ==> took
data/biojava-live-1.7.1/src/org/biojava/utils/lsid/LifeScienceIdentifier.java:83: identifer ==> identifier
data/biojava-live-1.7.1/src/org/biojava/utils/lsid/LifeScienceIdentifier.java:247: identifer ==> identifier
data/biojava-live-1.7.1/src/org/biojava/utils/lsid/LifeScienceIdentifier.java:276: identifer ==> identifier
data/biojava-live-1.7.1/src/org/biojava/utils/process/ExternalProcess.java:208: programm ==> program, programme
data/biojava-live-1.7.1/src/org/biojava/utils/process/ExternalProcess.java:210: programm ==> program, programme
data/biojava-live-1.7.1/src/org/biojava/utils/process/ReaderWriterPipe.java:74: loggging ==> logging
data/biojava-live-1.7.1/src/org/biojava/utils/stax/BooleanElementHandlerBase.java:34: calss ==> calls, class
data/biojava-live-1.7.1/src/org/biojava/utils/stax/ByteElementHandlerBase.java:34: calss ==> calls, class
data/biojava-live-1.7.1/src/org/biojava/utils/stax/CharElementHandlerBase.java:34: calss ==> calls, class
data/biojava-live-1.7.1/src/org/biojava/utils/stax/DoubleElementHandlerBase.java:34: calss ==> calls, class
data/biojava-live-1.7.1/src/org/biojava/utils/stax/LongElementHandlerBase.java:31: calss ==> calls, class
data/biojava-live-1.7.1/src/org/biojava/directory/SystemRegistry.java:49: delimted ==> delimited
data/biojava-live-1.7.1/src/org/biojava/directory/RegistryConfiguration.java:77: appropiate ==> appropriate
data/biojava-live-1.7.1/docs/howto/BIODATABASE-ACCESS-HOWTO.txt:147: databses ==> databases
data/biojava-live-1.7.1/tests/org/biojavax/SimpleCrossRefTest.java:24: autor ==> author
data/biojava-live-1.7.1/tests/org/biojavax/SimpleNamespaceTest.java:120: retreival ==> retrieval
data/biojava-live-1.7.1/tests/org/biojavax/SimpleDocRefTest.java:168: intitialized ==> initialized
data/biojava-live-1.7.1/tests/org/biojavax/SimpleDocRefTest.java:177: intitialized ==> initialized
data/biojava-live-1.7.1/tests/org/biojavax/bio/SimpleBioEntryTest.java:41: autor ==> author
data/biojava-live-1.7.1/tests/org/biojavax/ontology/SimpleComparableTermTest.java:131: lenght ==> length
data/biojava-live-1.7.1/tests/org/biojava/bio/seq/NewSimpleAssemblyTest.java:35: dependancy ==> dependency
data/biojava-live-1.7.1/tests/org/biojava/bio/seq/RNAToolsTest.java:271: dependant ==> dependent
data/biojava-live-1.7.1/tests/org/biojava/bio/seq/MergeFeatureHolderTest.java:27: dependancy ==> dependency
data/biojava-live-1.7.1/tests/org/biojava/bio/seq/FilterUtilsTest.java:233: Assymetry ==> Asymmetry
data/biojava-live-1.7.1/tests/org/biojava/bio/seq/ProteinToolsTest.java:125: ser ==> set
data/biojava-live-1.7.1/tests/org/biojava/bio/seq/SeqSerializationTest.java:77: ois ==> is
data/biojava-live-1.7.1/tests/org/biojava/bio/seq/SeqSerializationTest.java:79: ois ==> is
data/biojava-live-1.7.1/tests/org/biojava/bio/seq/SimpleAssemblyTest.java:35: dependancy ==> dependency
data/biojava-live-1.7.1/tests/org/biojava/bio/seq/filter/FilterTransformerTest.java:49: Translater ==> Translator
data/biojava-live-1.7.1/tests/org/biojava/bio/seq/filter/FilterTransformerTest.java:57: Translater ==> Translator
data/biojava-live-1.7.1/tests/org/biojava/bio/seq/filter/FilterTransformerTest.java:61: Translater ==> Translator
data/biojava-live-1.7.1/tests/org/biojava/bio/seq/impl/SubSequenceTest.java:40: dependancy ==> dependency
data/biojava-live-1.7.1/tests/org/biojava/bio/seq/impl/ViewSeqSerializationTest.java:81: ois ==> is
data/biojava-live-1.7.1/tests/org/biojava/bio/seq/impl/ViewSeqSerializationTest.java:83: ois ==> is
data/biojava-live-1.7.1/tests/org/biojava/bio/seq/impl/ViewSequenceTest.java:45: orignal ==> original
data/biojava-live-1.7.1/tests/org/biojava/bio/seq/impl/ViewSequenceTest.java:75: orignal ==> original
data/biojava-live-1.7.1/tests/org/biojava/bio/seq/impl/GappedSequenceTest.java:41: dependancy ==> dependency
data/biojava-live-1.7.1/tests/org/biojava/bio/seq/db/TestHashSequenceDB.java:153: ois ==> is
data/biojava-live-1.7.1/tests/org/biojava/bio/seq/db/TestHashSequenceDB.java:154: ois ==> is
data/biojava-live-1.7.1/tests/org/biojava/bio/seq/db/TestHashSequenceDB.java:155: ois ==> is
data/biojava-live-1.7.1/tests/org/biojava/bio/seq/db/TestHashSequenceDB.java:157: ois ==> is
data/biojava-live-1.7.1/tests/org/biojava/bio/symbol/SymbolSerializationTest.java:36: ois ==> is
data/biojava-live-1.7.1/tests/org/biojava/bio/symbol/SymbolSerializationTest.java:38: ois ==> is
data/biojava-live-1.7.1/tests/org/biojava/bio/symbol/SymbolSerializationTest.java:39: ois ==> is
data/biojava-live-1.7.1/tests/org/biojava/bio/symbol/GappedSymbolListTest.java:120: Begining ==> Beginning
data/biojava-live-1.7.1/tests/org/biojava/bio/symbol/GappedSymbolListTest.java:133: Begining ==> Beginning
data/biojava-live-1.7.1/tests/org/biojava/bio/symbol/BetweenLocationTest.java:274: lazyness ==> laziness
data/biojava-live-1.7.1/tests/org/biojava/bio/symbol/AlphabetSerializationTest.java:50: doub ==> doubt, daub
data/biojava-live-1.7.1/tests/org/biojava/bio/symbol/AlphabetSerializationTest.java:64: doub ==> doubt, daub
data/biojava-live-1.7.1/tests/org/biojava/bio/symbol/AlphabetSerializationTest.java:107: doub ==> doubt, daub
data/biojava-live-1.7.1/tests/org/biojava/bio/symbol/AlphabetSerializationTest.java:109: doub ==> doubt, daub
data/biojava-live-1.7.1/tests/org/biojava/bio/symbol/AlphabetSerializationTest.java:111: doub ==> doubt, daub
data/biojava-live-1.7.1/tests/org/biojava/bio/symbol/AlphabetSerializationTest.java:112: doub ==> doubt, daub
data/biojava-live-1.7.1/tests/org/biojava/bio/symbol/AlphabetSerializationTest.java:113: doub ==> doubt, daub
data/biojava-live-1.7.1/tests/org/biojava/bio/symbol/AlphabetSerializationTest.java:114: doub ==> doubt, daub
data/biojava-live-1.7.1/tests/org/biojava/bio/symbol/AlphabetSerializationTest.java:115: doub ==> doubt, daub
data/biojava-live-1.7.1/tests/org/biojava/bio/symbol/AlphabetSerializationTest.java:135: doub ==> doubt, daub
data/biojava-live-1.7.1/tests/org/biojava/bio/symbol/AlphabetSerializationTest.java:174: ois ==> is
data/biojava-live-1.7.1/tests/org/biojava/bio/symbol/AlphabetSerializationTest.java:176: ois ==> is
data/biojava-live-1.7.1/tests/org/biojava/bio/symbol/AlphabetSerializationTest.java:177: ois ==> is
data/biojava-live-1.7.1/tests/org/biojava/bio/symbol/AlphabetManagerTest.java:130: alph ==> alpha
data/biojava-live-1.7.1/tests/org/biojava/bio/symbol/AlphabetManagerTest.java:134: alph ==> alpha
data/biojava-live-1.7.1/tests/org/biojava/bio/symbol/DoubleAlphabetTest.java:27: cannonical ==> canonical
data/biojava-live-1.7.1/tests/org/biojava/bio/symbol/DoubleAlphabetTest.java:28: cannonical ==> canonical
data/biojava-live-1.7.1/tests/org/biojava/bio/symbol/DoubleAlphabetTest.java:28: cannonical ==> canonical
data/biojava-live-1.7.1/tests/org/biojava/bio/symbol/DoubleAlphabetTest.java:29: cannonical ==> canonical
data/biojava-live-1.7.1/tests/org/biojava/bio/symbol/SimpleWobbleDistributionTest.java:70: SER ==> SET
data/biojava-live-1.7.1/tests/org/biojava/bio/symbol/LinearAlphabetIndexTest.java:96: guarenteed ==> guaranteed
data/biojava-live-1.7.1/tests/org/biojava/bio/structure/MMcifTest.java:104: chech ==> check, czech
data/biojava-live-1.7.1/tests/org/biojava/bio/structure/StructurePairAlignerTest.java:85: occured ==> occurred
data/biojava-live-1.7.1/tests/org/biojava/bio/dist/DistSerTest.java:88: ois ==> is
data/biojava-live-1.7.1/tests/org/biojava/bio/dist/DistSerTest.java:90: ois ==> is
data/biojava-live-1.7.1/tests/org/biojava/bio/dist/DistSerTest.java:91: ois ==> is
data/biojava-live-1.7.1/tests/org/biojava/bio/dist/DistSerTest.java:104: ois ==> is
data/biojava-live-1.7.1/tests/org/biojava/bio/dist/DistSerTest.java:106: ois ==> is
data/biojava-live-1.7.1/tests/org/biojava/bio/dist/DistSerTest.java:107: ois ==> is
data/biojava-live-1.7.1/tests/org/biojava/bio/dist/DistSerTest.java:119: ois ==> is
data/biojava-live-1.7.1/tests/org/biojava/bio/dist/DistSerTest.java:121: ois ==> is
data/biojava-live-1.7.1/tests/org/biojava/bio/dist/DistSerTest.java:122: ois ==> is
data/biojava-live-1.7.1/tests/org/biojava/bio/dist/DistSerTest.java:134: ois ==> is
data/biojava-live-1.7.1/tests/org/biojava/bio/dist/DistSerTest.java:136: ois ==> is
data/biojava-live-1.7.1/tests/org/biojava/bio/dist/DistSerTest.java:137: ois ==> is
data/biojava-live-1.7.1/tests/org/biojava/bio/dp/DPSerializationTest.java:44: ois ==> is
data/biojava-live-1.7.1/tests/org/biojava/bio/dp/DPSerializationTest.java:45: ois ==> is
data/biojava-live-1.7.1/tests/org/biojava/bio/dp/DPSerializationTest.java:48: ois ==> is
data/biojava-live-1.7.1/tests/org/biojava/bio/program/fastq/AbstractFastqReaderTest.java:74: instnace ==> instance
data/biojava-live-1.7.1/tests/org/biojava/bio/program/indexdb/part2.embl:20: Reay ==> Ready, really, ray
data/biojava-live-1.7.1/tests/org/biojava/bio/program/indexdb/part2.embl:28: Reay ==> Ready, really, ray
data/biojava-live-1.7.1/tests/org/biojava/bio/program/indexdb/part2.embl:86: Reay ==> Ready, really, ray
data/biojava-live-1.7.1/tests/org/biojava/bio/program/indexdb/part2.embl:94: Reay ==> Ready, really, ray
data/biojava-live-1.7.1/tests/org/biojava/bio/program/indexdb/part2.embl:152: Reay ==> Ready, really, ray
data/biojava-live-1.7.1/tests/org/biojava/bio/program/indexdb/part2.embl:160: Reay ==> Ready, really, ray
data/biojava-live-1.7.1/tests/org/biojava/bio/proteomics/aaindex/SimpleSymbolPropertyTableDBTest.java:131: throwed ==> threw, thrown
data/biojava-live-1.7.1/tests/org/biojava/utils/walker/WalkerFactoryTest.java:74: differnt ==> different
data/biojava-live-1.7.1/tests/org/biojava/utils/lsid/LifeScienceIdentifierTest.java:286: ois ==> is
data/biojava-live-1.7.1/tests/org/biojava/utils/lsid/LifeScienceIdentifierTest.java:289: ser ==> set
data/biojava-live-1.7.1/tests/org/biojava/utils/lsid/LifeScienceIdentifierTest.java:295: ois ==> is
data/biojava-live-1.7.1/tests/org/biojava/utils/lsid/LifeScienceIdentifierTest.java:296: ois ==> is
data/biojava-live-1.7.1/tests/org/biojava/utils/lsid/LifeScienceIdentifierTest.java:314: ois ==> is
data/biojava-live-1.7.1/tests/files/AAL039263.gb:16: Wan ==> Want
data/biojava-live-1.7.1/tests/files/AY069118-gb.xml:51: Wan ==> Want
data/biojava-live-1.7.1/tests/files/388d_v23.pdb:127: CONECT ==> CONNECT
data/biojava-live-1.7.1/tests/files/388d_v23.pdb:944: CONECT ==> CONNECT
data/biojava-live-1.7.1/tests/files/388d_v23.pdb:945: CONECT ==> CONNECT
data/biojava-live-1.7.1/tests/files/388d_v23.pdb:946: CONECT ==> CONNECT
data/biojava-live-1.7.1/tests/files/388d_v23.pdb:947: CONECT ==> CONNECT
data/biojava-live-1.7.1/tests/files/388d_v23.pdb:948: CONECT ==> CONNECT
data/biojava-live-1.7.1/tests/files/388d_v23.pdb:949: CONECT ==> CONNECT
data/biojava-live-1.7.1/tests/files/388d_v23.pdb:950: CONECT ==> CONNECT
data/biojava-live-1.7.1/tests/files/388d_v23.pdb:951: CONECT ==> CONNECT
data/biojava-live-1.7.1/tests/files/388d_v23.pdb:952: CONECT ==> CONNECT
data/biojava-live-1.7.1/tests/files/388d_v23.pdb:953: CONECT ==> CONNECT
data/biojava-live-1.7.1/tests/files/388d_v23.pdb:954: CONECT ==> CONNECT
data/biojava-live-1.7.1/tests/files/388d_v23.pdb:955: CONECT ==> CONNECT
data/biojava-live-1.7.1/tests/files/388d_v23.pdb:956: CONECT ==> CONNECT
data/biojava-live-1.7.1/tests/files/388d_v23.pdb:957: CONECT ==> CONNECT
data/biojava-live-1.7.1/tests/files/388d_v23.pdb:958: CONECT ==> CONNECT
data/biojava-live-1.7.1/tests/files/388d_v23.pdb:959: CONECT ==> CONNECT
data/biojava-live-1.7.1/tests/files/AY069118.em:24: Wan ==> Want
data/biojava-live-1.7.1/tests/files/3cfy.pdb:294: SER ==> SET
data/biojava-live-1.7.1/tests/files/3cfy.pdb:333: SER ==> SET
data/biojava-live-1.7.1/tests/files/3cfy.pdb:342: SER ==> SET
data/biojava-live-1.7.1/tests/files/3cfy.pdb:342: SER ==> SET
data/biojava-live-1.7.1/tests/files/3cfy.pdb:343: SER ==> SET
data/biojava-live-1.7.1/tests/files/3cfy.pdb:345: SER ==> SET
data/biojava-live-1.7.1/tests/files/3cfy.pdb:346: SER ==> SET
data/biojava-live-1.7.1/tests/files/3cfy.pdb:347: SER ==> SET
data/biojava-live-1.7.1/tests/files/3cfy.pdb:348: SER ==> SET
data/biojava-live-1.7.1/tests/files/3cfy.pdb:350: SER ==> SET
data/biojava-live-1.7.1/tests/files/3cfy.pdb:354: SER ==> SET
data/biojava-live-1.7.1/tests/files/3cfy.pdb:356: SER ==> SET
data/biojava-live-1.7.1/tests/files/3cfy.pdb:357: SER ==> SET
data/biojava-live-1.7.1/tests/files/3cfy.pdb:362: SER ==> SET
data/biojava-live-1.7.1/tests/files/3cfy.pdb:457: SER ==> SET
data/biojava-live-1.7.1/tests/files/3cfy.pdb:458: SER ==> SET
data/biojava-live-1.7.1/tests/files/3cfy.pdb:459: SER ==> SET
data/biojava-live-1.7.1/tests/files/3cfy.pdb:460: SER ==> SET
data/biojava-live-1.7.1/tests/files/3cfy.pdb:461: SER ==> SET
data/biojava-live-1.7.1/tests/files/3cfy.pdb:462: SER ==> SET
data/biojava-live-1.7.1/tests/files/3cfy.pdb:467: SER ==> SET
data/biojava-live-1.7.1/tests/files/3cfy.pdb:468: SER ==> SET
data/biojava-live-1.7.1/tests/files/3cfy.pdb:469: SER ==> SET
data/biojava-live-1.7.1/tests/files/3cfy.pdb:470: SER ==> SET
data/biojava-live-1.7.1/tests/files/3cfy.pdb:471: SER ==> SET
data/biojava-live-1.7.1/tests/files/3cfy.pdb:472: SER ==> SET
data/biojava-live-1.7.1/tests/files/3cfy.pdb:746: SER ==> SET
data/biojava-live-1.7.1/tests/files/3cfy.pdb:747: SER ==> SET
data/biojava-live-1.7.1/tests/files/3cfy.pdb:748: SER ==> SET
data/biojava-live-1.7.1/tests/files/3cfy.pdb:749: SER ==> SET
data/biojava-live-1.7.1/tests/files/3cfy.pdb:750: SER ==> SET
data/biojava-live-1.7.1/tests/files/3cfy.pdb:751: SER ==> SET
data/biojava-live-1.7.1/tests/files/3cfy.pdb:865: SER ==> SET
data/biojava-live-1.7.1/tests/files/3cfy.pdb:866: SER ==> SET
data/biojava-live-1.7.1/tests/files/3cfy.pdb:867: SER ==> SET
data/biojava-live-1.7.1/tests/files/3cfy.pdb:868: SER ==> SET
data/biojava-live-1.7.1/tests/files/3cfy.pdb:869: SER ==> SET
data/biojava-live-1.7.1/tests/files/3cfy.pdb:870: SER ==> SET
data/biojava-live-1.7.1/tests/files/3cfy.pdb:992: SER ==> SET
data/biojava-live-1.7.1/tests/files/3cfy.pdb:993: SER ==> SET
data/biojava-live-1.7.1/tests/files/3cfy.pdb:994: SER ==> SET
data/biojava-live-1.7.1/tests/files/3cfy.pdb:995: SER ==> SET
data/biojava-live-1.7.1/tests/files/3cfy.pdb:996: SER ==> SET
data/biojava-live-1.7.1/tests/files/3cfy.pdb:997: SER ==> SET
data/biojava-live-1.7.1/tests/files/3cfy.pdb:1052: SER ==> SET
data/biojava-live-1.7.1/tests/files/3cfy.pdb:1053: SER ==> SET
data/biojava-live-1.7.1/tests/files/3cfy.pdb:1054: SER ==> SET
data/biojava-live-1.7.1/tests/files/3cfy.pdb:1055: SER ==> SET
data/biojava-live-1.7.1/tests/files/3cfy.pdb:1056: SER ==> SET
data/biojava-live-1.7.1/tests/files/3cfy.pdb:1057: SER ==> SET
data/biojava-live-1.7.1/tests/files/3cfy.pdb:1275: SER ==> SET
data/biojava-live-1.7.1/tests/files/3cfy.pdb:1276: SER ==> SET
data/biojava-live-1.7.1/tests/files/3cfy.pdb:1277: SER ==> SET
data/biojava-live-1.7.1/tests/files/3cfy.pdb:1278: SER ==> SET
data/biojava-live-1.7.1/tests/files/3cfy.pdb:1279: SER ==> SET
data/biojava-live-1.7.1/tests/files/3cfy.pdb:1280: SER ==> SET
data/biojava-live-1.7.1/tests/files/3cdl.pdb:344: SER ==> SET
data/biojava-live-1.7.1/tests/files/3cdl.pdb:352: SER ==> SET
data/biojava-live-1.7.1/tests/files/3cdl.pdb:360: SER ==> SET
data/biojava-live-1.7.1/tests/files/3cdl.pdb:369: SER ==> SET
data/biojava-live-1.7.1/tests/files/3cdl.pdb:438: SER ==> SET
data/biojava-live-1.7.1/tests/files/3cdl.pdb:441: SER ==> SET
data/biojava-live-1.7.1/tests/files/3cdl.pdb:444: SER ==> SET
data/biojava-live-1.7.1/tests/files/3cdl.pdb:444: SER ==> SET
data/biojava-live-1.7.1/tests/files/3cdl.pdb:446: SER ==> SET
data/biojava-live-1.7.1/tests/files/3cdl.pdb:447: SER ==> SET
data/biojava-live-1.7.1/tests/files/3cdl.pdb:447: SER ==> SET
data/biojava-live-1.7.1/tests/files/3cdl.pdb:449: SER ==> SET
data/biojava-live-1.7.1/tests/files/3cdl.pdb:450: SER ==> SET
data/biojava-live-1.7.1/tests/files/3cdl.pdb:451: SER ==> SET
data/biojava-live-1.7.1/tests/files/3cdl.pdb:451: SER ==> SET
data/biojava-live-1.7.1/tests/files/3cdl.pdb:452: SER ==> SET
data/biojava-live-1.7.1/tests/files/3cdl.pdb:454: SER ==> SET
data/biojava-live-1.7.1/tests/files/3cdl.pdb:456: SER ==> SET
data/biojava-live-1.7.1/tests/files/3cdl.pdb:458: SER ==> SET
data/biojava-live-1.7.1/tests/files/3cdl.pdb:458: SER ==> SET
data/biojava-live-1.7.1/tests/files/3cdl.pdb:460: SER ==> SET
data/biojava-live-1.7.1/tests/files/3cdl.pdb:460: SER ==> SET
data/biojava-live-1.7.1/tests/files/3cdl.pdb:462: SER ==> SET
data/biojava-live-1.7.1/tests/files/3cdl.pdb:463: SER ==> SET
data/biojava-live-1.7.1/tests/files/3cdl.pdb:463: SER ==> SET
data/biojava-live-1.7.1/tests/files/3cdl.pdb:465: SER ==> SET
data/biojava-live-1.7.1/tests/files/3cdl.pdb:466: SER ==> SET
data/biojava-live-1.7.1/tests/files/3cdl.pdb:467: SER ==> SET
data/biojava-live-1.7.1/tests/files/3cdl.pdb:467: SER ==> SET
data/biojava-live-1.7.1/tests/files/3cdl.pdb:468: SER ==> SET
data/biojava-live-1.7.1/tests/files/3cdl.pdb:470: SER ==> SET
data/biojava-live-1.7.1/tests/files/3cdl.pdb:472: SER ==> SET
data/biojava-live-1.7.1/tests/files/3cdl.pdb:474: SER ==> SET
data/biojava-live-1.7.1/tests/files/3cdl.pdb:474: SER ==> SET
data/biojava-live-1.7.1/tests/files/3cdl.pdb:500: SER ==> SET
data/biojava-live-1.7.1/tests/files/3cdl.pdb:501: SER ==> SET
data/biojava-live-1.7.1/tests/files/3cdl.pdb:502: SER ==> SET
data/biojava-live-1.7.1/tests/files/3cdl.pdb:503: SER ==> SET
data/biojava-live-1.7.1/tests/files/3cdl.pdb:505: SER ==> SET
data/biojava-live-1.7.1/tests/files/3cdl.pdb:511: SER ==> SET
data/biojava-live-1.7.1/tests/files/3cdl.pdb:512: SER ==> SET
data/biojava-live-1.7.1/tests/files/3cdl.pdb:513: SER ==> SET
data/biojava-live-1.7.1/tests/files/3cdl.pdb:514: SER ==> SET
data/biojava-live-1.7.1/tests/files/3cdl.pdb:516: SER ==> SET
data/biojava-live-1.7.1/tests/files/3cdl.pdb:589: SER ==> SET
data/biojava-live-1.7.1/tests/files/3cdl.pdb:590: SER ==> SET
data/biojava-live-1.7.1/tests/files/3cdl.pdb:591: SER ==> SET
data/biojava-live-1.7.1/tests/files/3cdl.pdb:592: SER ==> SET
data/biojava-live-1.7.1/tests/files/3cdl.pdb:593: SER ==> SET
data/biojava-live-1.7.1/tests/files/3cdl.pdb:594: SER ==> SET
data/biojava-live-1.7.1/tests/files/3cdl.pdb:724: SER ==> SET
data/biojava-live-1.7.1/tests/files/3cdl.pdb:725: SER ==> SET
data/biojava-live-1.7.1/tests/files/3cdl.pdb:726: SER ==> SET
data/biojava-live-1.7.1/tests/files/3cdl.pdb:727: SER ==> SET
data/biojava-live-1.7.1/tests/files/3cdl.pdb:728: SER ==> SET
data/biojava-live-1.7.1/tests/files/3cdl.pdb:729: SER ==> SET
data/biojava-live-1.7.1/tests/files/3cdl.pdb:807: SER ==> SET
data/biojava-live-1.7.1/tests/files/3cdl.pdb:808: SER ==> SET
data/biojava-live-1.7.1/tests/files/3cdl.pdb:809: SER ==> SET
data/biojava-live-1.7.1/tests/files/3cdl.pdb:810: SER ==> SET
data/biojava-live-1.7.1/tests/files/3cdl.pdb:811: SER ==> SET
data/biojava-live-1.7.1/tests/files/3cdl.pdb:812: SER ==> SET
data/biojava-live-1.7.1/tests/files/3cdl.pdb:895: SER ==> SET
data/biojava-live-1.7.1/tests/files/3cdl.pdb:896: SER ==> SET
data/biojava-live-1.7.1/tests/files/3cdl.pdb:897: SER ==> SET
data/biojava-live-1.7.1/tests/files/3cdl.pdb:898: SER ==> SET
data/biojava-live-1.7.1/tests/files/3cdl.pdb:899: SER ==> SET
data/biojava-live-1.7.1/tests/files/3cdl.pdb:900: SER ==> SET
data/biojava-live-1.7.1/tests/files/3cdl.pdb:1106: SER ==> SET
data/biojava-live-1.7.1/tests/files/3cdl.pdb:1107: SER ==> SET
data/biojava-live-1.7.1/tests/files/3cdl.pdb:1108: SER ==> SET
data/biojava-live-1.7.1/tests/files/3cdl.pdb:1109: SER ==> SET
data/biojava-live-1.7.1/tests/files/3cdl.pdb:1110: SER ==> SET
data/biojava-live-1.7.1/tests/files/3cdl.pdb:1111: SER ==> SET
data/biojava-live-1.7.1/tests/files/3cdl.pdb:1267: SER ==> SET
data/biojava-live-1.7.1/tests/files/3cdl.pdb:1268: SER ==> SET
data/biojava-live-1.7.1/tests/files/3cdl.pdb:1269: SER ==> SET
data/biojava-live-1.7.1/tests/files/3cdl.pdb:1270: SER ==> SET
data/biojava-live-1.7.1/tests/files/3cdl.pdb:1271: SER ==> SET
data/biojava-live-1.7.1/tests/files/3cdl.pdb:1272: SER ==> SET
data/biojava-live-1.7.1/tests/files/3cdl.pdb:1273: SER ==> SET
data/biojava-live-1.7.1/tests/files/3cdl.pdb:1274: SER ==> SET
data/biojava-live-1.7.1/tests/files/3cdl.pdb:1275: SER ==> SET
data/biojava-live-1.7.1/tests/files/3cdl.pdb:1276: SER ==> SET
data/biojava-live-1.7.1/tests/files/3cdl.pdb:1277: SER ==> SET
data/biojava-live-1.7.1/tests/files/3cdl.pdb:1278: SER ==> SET
data/biojava-live-1.7.1/tests/files/3cdl.pdb:1385: SER ==> SET
data/biojava-live-1.7.1/tests/files/3cdl.pdb:1386: SER ==> SET
data/biojava-live-1.7.1/tests/files/3cdl.pdb:1387: SER ==> SET
data/biojava-live-1.7.1/tests/files/3cdl.pdb:1388: SER ==> SET
data/biojava-live-1.7.1/tests/files/3cdl.pdb:1389: SER ==> SET
data/biojava-live-1.7.1/tests/files/3cdl.pdb:1390: SER ==> SET
data/biojava-live-1.7.1/tests/files/3cdl.pdb:1497: SER ==> SET
data/biojava-live-1.7.1/tests/files/3cdl.pdb:1498: SER ==> SET
data/biojava-live-1.7.1/tests/files/3cdl.pdb:1499: SER ==> SET
data/biojava-live-1.7.1/tests/files/3cdl.pdb:1500: SER ==> SET
data/biojava-live-1.7.1/tests/files/3cdl.pdb:1501: SER ==> SET
data/biojava-live-1.7.1/tests/files/3cdl.pdb:1502: SER ==> SET
data/biojava-live-1.7.1/tests/files/3cdl.pdb:1727: SER ==> SET
data/biojava-live-1.7.1/tests/files/3cdl.pdb:1728: SER ==> SET
data/biojava-live-1.7.1/tests/files/3cdl.pdb:1729: SER ==> SET
data/biojava-live-1.7.1/tests/files/3cdl.pdb:1730: SER ==> SET
data/biojava-live-1.7.1/tests/files/3cdl.pdb:1731: SER ==> SET
data/biojava-live-1.7.1/tests/files/3cdl.pdb:1732: SER ==> SET
data/biojava-live-1.7.1/tests/files/3cdl.pdb:1890: SER ==> SET
data/biojava-live-1.7.1/tests/files/3cdl.pdb:1891: SER ==> SET
data/biojava-live-1.7.1/tests/files/3cdl.pdb:1892: SER ==> SET
data/biojava-live-1.7.1/tests/files/3cdl.pdb:1893: SER ==> SET
data/biojava-live-1.7.1/tests/files/3cdl.pdb:1894: SER ==> SET
data/biojava-live-1.7.1/tests/files/3cdl.pdb:1895: SER ==> SET
data/biojava-live-1.7.1/tests/files/3cdl.pdb:1927: SER ==> SET
data/biojava-live-1.7.1/tests/files/3cdl.pdb:1928: SER ==> SET
data/biojava-live-1.7.1/tests/files/3cdl.pdb:1929: SER ==> SET
data/biojava-live-1.7.1/tests/files/3cdl.pdb:1930: SER ==> SET
data/biojava-live-1.7.1/tests/files/3cdl.pdb:1931: SER ==> SET
data/biojava-live-1.7.1/tests/files/3cdl.pdb:1932: SER ==> SET
data/biojava-live-1.7.1/tests/files/3cdl.pdb:2097: SER ==> SET
data/biojava-live-1.7.1/tests/files/3cdl.pdb:2098: SER ==> SET
data/biojava-live-1.7.1/tests/files/3cdl.pdb:2099: SER ==> SET
data/biojava-live-1.7.1/tests/files/3cdl.pdb:2100: SER ==> SET
data/biojava-live-1.7.1/tests/files/3cdl.pdb:2101: SER ==> SET
data/biojava-live-1.7.1/tests/files/3cdl.pdb:2102: SER ==> SET
data/biojava-live-1.7.1/tests/files/3cdl.pdb:2232: SER ==> SET
data/biojava-live-1.7.1/tests/files/3cdl.pdb:2233: SER ==> SET
data/biojava-live-1.7.1/tests/files/3cdl.pdb:2234: SER ==> SET
data/biojava-live-1.7.1/tests/files/3cdl.pdb:2235: SER ==> SET
data/biojava-live-1.7.1/tests/files/3cdl.pdb:2236: SER ==> SET
data/biojava-live-1.7.1/tests/files/3cdl.pdb:2237: SER ==> SET
data/biojava-live-1.7.1/tests/files/3cdl.pdb:2315: SER ==> SET
data/biojava-live-1.7.1/tests/files/3cdl.pdb:2316: SER ==> SET
data/biojava-live-1.7.1/tests/files/3cdl.pdb:2317: SER ==> SET
data/biojava-live-1.7.1/tests/files/3cdl.pdb:2318: SER ==> SET
data/biojava-live-1.7.1/tests/files/3cdl.pdb:2319: SER ==> SET
data/biojava-live-1.7.1/tests/files/3cdl.pdb:2320: SER ==> SET
data/biojava-live-1.7.1/tests/files/3cdl.pdb:2403: SER ==> SET
data/biojava-live-1.7.1/tests/files/3cdl.pdb:2404: SER ==> SET
data/biojava-live-1.7.1/tests/files/3cdl.pdb:2405: SER ==> SET
data/biojava-live-1.7.1/tests/files/3cdl.pdb:2406: SER ==> SET
data/biojava-live-1.7.1/tests/files/3cdl.pdb:2407: SER ==> SET
data/biojava-live-1.7.1/tests/files/3cdl.pdb:2408: SER ==> SET
data/biojava-live-1.7.1/tests/files/3cdl.pdb:2586: SER ==> SET
data/biojava-live-1.7.1/tests/files/3cdl.pdb:2587: SER ==> SET
data/biojava-live-1.7.1/tests/files/3cdl.pdb:2588: SER ==> SET
data/biojava-live-1.7.1/tests/files/3cdl.pdb:2589: SER ==> SET
data/biojava-live-1.7.1/tests/files/3cdl.pdb:2590: SER ==> SET
data/biojava-live-1.7.1/tests/files/3cdl.pdb:2591: SER ==> SET
data/biojava-live-1.7.1/tests/files/3cdl.pdb:2747: SER ==> SET
data/biojava-live-1.7.1/tests/files/3cdl.pdb:2748: SER ==> SET
data/biojava-live-1.7.1/tests/files/3cdl.pdb:2749: SER ==> SET
data/biojava-live-1.7.1/tests/files/3cdl.pdb:2750: SER ==> SET
data/biojava-live-1.7.1/tests/files/3cdl.pdb:2751: SER ==> SET
data/biojava-live-1.7.1/tests/files/3cdl.pdb:2752: SER ==> SET
data/biojava-live-1.7.1/tests/files/3cdl.pdb:2753: SER ==> SET
data/biojava-live-1.7.1/tests/files/3cdl.pdb:2754: SER ==> SET
data/biojava-live-1.7.1/tests/files/3cdl.pdb:2755: SER ==> SET
data/biojava-live-1.7.1/tests/files/3cdl.pdb:2756: SER ==> SET
data/biojava-live-1.7.1/tests/files/3cdl.pdb:2757: SER ==> SET
data/biojava-live-1.7.1/tests/files/3cdl.pdb:2758: SER ==> SET
data/biojava-live-1.7.1/tests/files/3cdl.pdb:2865: SER ==> SET
data/biojava-live-1.7.1/tests/files/3cdl.pdb:2866: SER ==> SET
data/biojava-live-1.7.1/tests/files/3cdl.pdb:2867: SER ==> SET
data/biojava-live-1.7.1/tests/files/3cdl.pdb:2868: SER ==> SET
data/biojava-live-1.7.1/tests/files/3cdl.pdb:2869: SER ==> SET
data/biojava-live-1.7.1/tests/files/3cdl.pdb:2870: SER ==> SET
data/biojava-live-1.7.1/tests/files/3cdl.pdb:3009: SER ==> SET
data/biojava-live-1.7.1/tests/files/3cdl.pdb:3010: SER ==> SET
data/biojava-live-1.7.1/tests/files/3cdl.pdb:3011: SER ==> SET
data/biojava-live-1.7.1/tests/files/3cdl.pdb:3012: SER ==> SET
data/biojava-live-1.7.1/tests/files/3cdl.pdb:3013: SER ==> SET
data/biojava-live-1.7.1/tests/files/3cdl.pdb:3014: SER ==> SET
data/biojava-live-1.7.1/tests/files/3cdl.pdb:3244: SER ==> SET
data/biojava-live-1.7.1/tests/files/3cdl.pdb:3245: SER ==> SET
data/biojava-live-1.7.1/tests/files/3cdl.pdb:3246: SER ==> SET
data/biojava-live-1.7.1/tests/files/3cdl.pdb:3247: SER ==> SET
data/biojava-live-1.7.1/tests/files/3cdl.pdb:3248: SER ==> SET
data/biojava-live-1.7.1/tests/files/3cdl.pdb:3249: SER ==> SET
data/biojava-live-1.7.1/tests/files/3cdl.pdb:3407: SER ==> SET
data/biojava-live-1.7.1/tests/files/3cdl.pdb:3408: SER ==> SET
data/biojava-live-1.7.1/tests/files/3cdl.pdb:3409: SER ==> SET
data/biojava-live-1.7.1/tests/files/3cdl.pdb:3410: SER ==> SET
data/biojava-live-1.7.1/tests/files/3cdl.pdb:3411: SER ==> SET
data/biojava-live-1.7.1/tests/files/3cdl.pdb:3412: SER ==> SET
data/biojava-live-1.7.1/tests/files/3cdl.pdb:3444: SER ==> SET
data/biojava-live-1.7.1/tests/files/3cdl.pdb:3445: SER ==> SET
data/biojava-live-1.7.1/tests/files/3cdl.pdb:3446: SER ==> SET
data/biojava-live-1.7.1/tests/files/3cdl.pdb:3447: SER ==> SET
data/biojava-live-1.7.1/tests/files/3cdl.pdb:3448: SER ==> SET
data/biojava-live-1.7.1/tests/files/3cdl.pdb:3449: SER ==> SET
data/biojava-live-1.7.1/tests/files/3cdl.pdb:3598: CONECT ==> CONNECT
data/biojava-live-1.7.1/tests/files/3cdl.pdb:3599: CONECT ==> CONNECT
data/biojava-live-1.7.1/tests/files/3cdl.pdb:3600: CONECT ==> CONNECT
data/biojava-live-1.7.1/tests/files/3cdl.pdb:3601: CONECT ==> CONNECT
data/biojava-live-1.7.1/tests/files/3cdl.pdb:3602: CONECT ==> CONNECT
data/biojava-live-1.7.1/tests/files/3cdl.pdb:3603: CONECT ==> CONNECT
data/biojava-live-1.7.1/tests/files/3cdl.pdb:3604: CONECT ==> CONNECT
data/biojava-live-1.7.1/tests/files/3cdl.pdb:3605: CONECT ==> CONNECT
data/biojava-live-1.7.1/tests/files/3cdl.pdb:3606: CONECT ==> CONNECT
data/biojava-live-1.7.1/tests/files/3cdl.pdb:3607: CONECT ==> CONNECT
data/biojava-live-1.7.1/tests/files/3cdl.pdb:3608: CONECT ==> CONNECT
data/biojava-live-1.7.1/tests/files/3cdl.pdb:3609: CONECT ==> CONNECT
data/biojava-live-1.7.1/tests/files/3cdl.pdb:3610: CONECT ==> CONNECT
data/biojava-live-1.7.1/tests/files/3cdl.pdb:3611: CONECT ==> CONNECT
data/biojava-live-1.7.1/tests/files/3cdl.pdb:3612: CONECT ==> CONNECT
data/biojava-live-1.7.1/tests/files/3cdl.pdb:3613: CONECT ==> CONNECT
data/biojava-live-1.7.1/tests/files/3cdl.pdb:3614: CONECT ==> CONNECT
data/biojava-live-1.7.1/tests/files/3cdl.pdb:3615: CONECT ==> CONNECT
data/biojava-live-1.7.1/tests/files/3cdl.pdb:3616: CONECT ==> CONNECT
data/biojava-live-1.7.1/tests/files/3cdl.pdb:3617: CONECT ==> CONNECT
data/biojava-live-1.7.1/tests/files/3cdl.pdb:3618: CONECT ==> CONNECT
data/biojava-live-1.7.1/tests/files/3cdl.pdb:3619: CONECT ==> CONNECT
data/biojava-live-1.7.1/tests/files/3cdl.pdb:3620: CONECT ==> CONNECT
data/biojava-live-1.7.1/tests/files/3cdl.pdb:3621: CONECT ==> CONNECT
data/biojava-live-1.7.1/tests/files/3cdl.pdb:3622: CONECT ==> CONNECT
data/biojava-live-1.7.1/tests/files/3cdl.pdb:3623: CONECT ==> CONNECT
data/biojava-live-1.7.1/tests/files/3cdl.pdb:3624: CONECT ==> CONNECT
data/biojava-live-1.7.1/tests/files/3cdl.pdb:3625: CONECT ==> CONNECT
data/biojava-live-1.7.1/tests/files/3cdl.pdb:3626: CONECT ==> CONNECT
data/biojava-live-1.7.1/tests/files/3cdl.pdb:3627: CONECT ==> CONNECT
data/biojava-live-1.7.1/tests/files/3cdl.pdb:3628: CONECT ==> CONNECT
data/biojava-live-1.7.1/tests/files/3cdl.pdb:3629: CONECT ==> CONNECT
data/biojava-live-1.7.1/tests/files/3cdl.pdb:3630: CONECT ==> CONNECT
data/biojava-live-1.7.1/tests/files/3cdl.pdb:3631: CONECT ==> CONNECT
data/biojava-live-1.7.1/tests/files/3cdl.pdb:3632: CONECT ==> CONNECT
data/biojava-live-1.7.1/tests/files/3cdl.pdb:3633: CONECT ==> CONNECT
data/biojava-live-1.7.1/tests/files/3cdl.pdb:3634: CONECT ==> CONNECT
data/biojava-live-1.7.1/tests/files/3cdl.pdb:3635: CONECT ==> CONNECT
data/biojava-live-1.7.1/tests/files/3cdl.pdb:3636: CONECT ==> CONNECT
data/biojava-live-1.7.1/tests/files/3cdl.pdb:3637: CONECT ==> CONNECT
data/biojava-live-1.7.1/tests/files/3cdl.pdb:3638: CONECT ==> CONNECT
data/biojava-live-1.7.1/tests/files/3cdl.pdb:3639: CONECT ==> CONNECT
data/biojava-live-1.7.1/tests/files/3cdl.pdb:3640: CONECT ==> CONNECT
data/biojava-live-1.7.1/tests/files/3cdl.pdb:3641: CONECT ==> CONNECT
data/biojava-live-1.7.1/tests/files/3cdl.pdb:3642: CONECT ==> CONNECT
data/biojava-live-1.7.1/tests/files/3cdl.pdb:3643: CONECT ==> CONNECT
data/biojava-live-1.7.1/tests/files/3cdl.pdb:3644: CONECT ==> CONNECT
data/biojava-live-1.7.1/tests/files/3cdl.pdb:3645: CONECT ==> CONNECT
data/biojava-live-1.7.1/tests/files/3cdl.pdb:3646: CONECT ==> CONNECT
data/biojava-live-1.7.1/tests/files/3cdl.pdb:3647: CONECT ==> CONNECT
data/biojava-live-1.7.1/tests/files/3cdl.pdb:3648: CONECT ==> CONNECT
data/biojava-live-1.7.1/tests/files/3cdl.pdb:3649: CONECT ==> CONNECT
data/biojava-live-1.7.1/tests/files/3cdl.pdb:3650: CONECT ==> CONNECT
data/biojava-live-1.7.1/tests/files/3cdl.pdb:3651: CONECT ==> CONNECT
data/biojava-live-1.7.1/tests/files/3cdl.pdb:3652: CONECT ==> CONNECT
data/biojava-live-1.7.1/tests/files/3cdl.pdb:3653: CONECT ==> CONNECT
data/biojava-live-1.7.1/tests/files/3cdl.pdb:3654: CONECT ==> CONNECT
data/biojava-live-1.7.1/tests/files/3cdl.pdb:3655: CONECT ==> CONNECT
data/biojava-live-1.7.1/tests/files/3cdl.pdb:3656: CONECT ==> CONNECT
data/biojava-live-1.7.1/tests/files/3cdl.pdb:3657: CONECT ==> CONNECT
data/biojava-live-1.7.1/tests/files/3cdl.pdb:3658: CONECT ==> CONNECT
data/biojava-live-1.7.1/tests/files/3cdl.pdb:3659: CONECT ==> CONNECT
data/biojava-live-1.7.1/tests/files/3cdl.pdb:3660: CONECT ==> CONNECT
data/biojava-live-1.7.1/tests/files/3cdl.pdb:3661: CONECT ==> CONNECT
data/biojava-live-1.7.1/tests/files/3cdl.pdb:3662: CONECT ==> CONNECT
data/biojava-live-1.7.1/tests/files/3cdl.pdb:3663: CONECT ==> CONNECT
data/biojava-live-1.7.1/tests/files/3cdl.pdb:3664: CONECT ==> CONNECT
data/biojava-live-1.7.1/tests/files/3cdl.pdb:3665: CONECT ==> CONNECT
data/biojava-live-1.7.1/tests/files/3cdl.pdb:3666: CONECT ==> CONNECT
data/biojava-live-1.7.1/tests/files/3cdl.pdb:3667: CONECT ==> CONNECT
data/biojava-live-1.7.1/tests/files/3cdl.pdb:3668: CONECT ==> CONNECT
data/biojava-live-1.7.1/tests/files/3cdl.pdb:3669: CONECT ==> CONNECT
data/biojava-live-1.7.1/tests/files/3cdl.pdb:3670: CONECT ==> CONNECT
data/biojava-live-1.7.1/tests/files/3cdl.pdb:3671: CONECT ==> CONNECT
data/biojava-live-1.7.1/tests/files/3cdl.pdb:3672: CONECT ==> CONNECT
data/biojava-live-1.7.1/tests/files/3cdl.pdb:3673: CONECT ==> CONNECT
data/biojava-live-1.7.1/tests/files/3cdl.pdb:3674: CONECT ==> CONNECT
data/biojava-live-1.7.1/tests/files/3cdl.pdb:3675: CONECT ==> CONNECT
data/biojava-live-1.7.1/tests/files/3cdl.pdb:3676: CONECT ==> CONNECT
data/biojava-live-1.7.1/tests/files/3cdl.pdb:3677: CONECT ==> CONNECT
data/biojava-live-1.7.1/tests/files/3cdl.pdb:3678: CONECT ==> CONNECT
data/biojava-live-1.7.1/tests/files/3cdl.pdb:3679: CONECT ==> CONNECT
data/biojava-live-1.7.1/tests/files/3cdl.pdb:3680: CONECT ==> CONNECT
data/biojava-live-1.7.1/tests/files/3cdl.pdb:3681: CONECT ==> CONNECT
data/biojava-live-1.7.1/tests/files/3cdl.pdb:3682: CONECT ==> CONNECT
data/biojava-live-1.7.1/tests/files/1tap.pdb:30: NOE ==> NOT, NO, NODE, KNOW, NOW
data/biojava-live-1.7.1/tests/files/1tap.pdb:57: NOE ==> NOT, NO, NODE, KNOW, NOW
data/biojava-live-1.7.1/tests/files/1tap.pdb:58: NOE ==> NOT, NO, NODE, KNOW, NOW
data/biojava-live-1.7.1/tests/files/1tap.pdb:62: NOE ==> NOT, NO, NODE, KNOW, NOW
data/biojava-live-1.7.1/tests/files/1tap.pdb:119: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:120: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:121: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:121: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:123: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:448: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:449: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:450: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:451: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:452: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:453: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:454: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:455: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:456: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:457: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:458: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:459: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:731: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:732: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:733: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:734: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:735: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:736: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:737: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:738: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:739: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:740: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:741: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:742: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:981: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:982: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:983: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:984: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:985: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:986: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:987: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:988: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:989: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:990: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:991: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:992: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:993: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:994: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:995: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:996: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:997: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:998: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:999: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:1000: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:1001: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:1002: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:1003: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:1004: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:1477: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:1478: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:1479: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:1480: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:1481: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:1482: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:1483: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:1484: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:1485: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:1486: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:1487: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:1488: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:1760: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:1761: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:1762: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:1763: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:1764: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:1765: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:1766: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:1767: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:1768: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:1769: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:1770: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:1771: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:2010: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:2011: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:2012: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:2013: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:2014: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:2015: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:2016: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:2017: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:2018: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:2019: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:2020: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:2021: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:2022: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:2023: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:2024: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:2025: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:2026: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:2027: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:2028: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:2029: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:2030: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:2031: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:2032: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:2033: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:2506: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:2507: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:2508: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:2509: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:2510: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:2511: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:2512: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:2513: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:2514: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:2515: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:2516: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:2517: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:2789: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:2790: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:2791: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:2792: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:2793: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:2794: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:2795: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:2796: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:2797: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:2798: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:2799: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:2800: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:3039: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:3040: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:3041: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:3042: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:3043: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:3044: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:3045: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:3046: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:3047: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:3048: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:3049: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:3050: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:3051: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:3052: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:3053: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:3054: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:3055: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:3056: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:3057: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:3058: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:3059: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:3060: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:3061: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:3062: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:3535: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:3536: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:3537: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:3538: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:3539: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:3540: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:3541: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:3542: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:3543: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:3544: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:3545: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:3546: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:3818: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:3819: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:3820: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:3821: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:3822: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:3823: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:3824: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:3825: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:3826: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:3827: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:3828: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:3829: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:4068: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:4069: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:4070: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:4071: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:4072: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:4073: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:4074: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:4075: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:4076: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:4077: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:4078: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:4079: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:4080: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:4081: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:4082: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:4083: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:4084: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:4085: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:4086: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:4087: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:4088: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:4089: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:4090: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:4091: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:4564: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:4565: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:4566: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:4567: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:4568: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:4569: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:4570: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:4571: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:4572: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:4573: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:4574: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:4575: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:4847: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:4848: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:4849: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:4850: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:4851: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:4852: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:4853: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:4854: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:4855: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:4856: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:4857: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:4858: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:5097: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:5098: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:5099: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:5100: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:5101: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:5102: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:5103: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:5104: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:5105: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:5106: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:5107: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:5108: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:5109: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:5110: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:5111: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:5112: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:5113: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:5114: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:5115: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:5116: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:5117: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:5118: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:5119: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:5120: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:5593: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:5594: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:5595: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:5596: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:5597: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:5598: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:5599: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:5600: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:5601: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:5602: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:5603: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:5604: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:5876: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:5877: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:5878: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:5879: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:5880: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:5881: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:5882: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:5883: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:5884: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:5885: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:5886: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:5887: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:6126: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:6127: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:6128: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:6129: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:6130: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:6131: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:6132: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:6133: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:6134: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:6135: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:6136: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:6137: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:6138: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:6139: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:6140: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:6141: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:6142: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:6143: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:6144: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:6145: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:6146: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:6147: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:6148: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:6149: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:6622: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:6623: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:6624: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:6625: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:6626: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:6627: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:6628: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:6629: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:6630: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:6631: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:6632: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:6633: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:6905: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:6906: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:6907: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:6908: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:6909: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:6910: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:6911: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:6912: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:6913: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:6914: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:6915: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:6916: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:7155: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:7156: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:7157: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:7158: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:7159: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:7160: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:7161: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:7162: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:7163: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:7164: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:7165: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:7166: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:7167: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:7168: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:7169: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:7170: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:7171: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:7172: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:7173: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:7174: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:7175: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:7176: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:7177: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:7178: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:7651: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:7652: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:7653: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:7654: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:7655: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:7656: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:7657: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:7658: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:7659: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:7660: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:7661: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:7662: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:7934: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:7935: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:7936: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:7937: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:7938: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:7939: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:7940: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:7941: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:7942: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:7943: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:7944: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:7945: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:8184: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:8185: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:8186: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:8187: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:8188: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:8189: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:8190: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:8191: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:8192: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:8193: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:8194: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:8195: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:8196: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:8197: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:8198: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:8199: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:8200: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:8201: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:8202: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:8203: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:8204: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:8205: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:8206: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:8207: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:8680: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:8681: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:8682: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:8683: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:8684: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:8685: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:8686: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:8687: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:8688: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:8689: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:8690: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:8691: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:8963: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:8964: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:8965: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:8966: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:8967: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:8968: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:8969: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:8970: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:8971: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:8972: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:8973: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:8974: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:9213: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:9214: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:9215: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:9216: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:9217: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:9218: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:9219: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:9220: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:9221: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:9222: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:9223: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:9224: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:9225: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:9226: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:9227: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:9228: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:9229: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:9230: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:9231: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:9232: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:9233: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:9234: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:9235: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:9236: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:9709: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:9710: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:9711: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:9712: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:9713: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:9714: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:9715: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:9716: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:9717: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:9718: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:9719: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:9720: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:9992: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:9993: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:9994: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:9995: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:9996: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:9997: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:9998: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:9999: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:10000: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:10001: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:10002: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:10003: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:10242: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:10243: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:10244: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:10245: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:10246: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:10247: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:10248: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:10249: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:10250: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:10251: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:10252: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:10253: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:10254: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:10255: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:10256: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:10257: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:10258: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:10259: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:10260: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:10261: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:10262: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:10263: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:10264: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:10265: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:10738: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:10739: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:10740: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:10741: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:10742: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:10743: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:10744: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:10745: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:10746: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:10747: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:10748: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:10749: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:11021: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:11022: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:11023: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:11024: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:11025: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:11026: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:11027: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:11028: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:11029: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:11030: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:11031: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:11032: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:11271: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:11272: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:11273: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:11274: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:11275: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:11276: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:11277: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:11278: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:11279: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:11280: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:11281: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:11282: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:11283: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:11284: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:11285: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:11286: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:11287: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:11288: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:11289: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:11290: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:11291: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:11292: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:11293: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:11294: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:11767: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:11768: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:11769: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:11770: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:11771: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:11772: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:11773: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:11774: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:11775: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:11776: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:11777: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:11778: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:12050: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:12051: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:12052: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:12053: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:12054: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:12055: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:12056: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:12057: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:12058: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:12059: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:12060: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:12061: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:12300: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:12301: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:12302: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:12303: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:12304: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:12305: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:12306: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:12307: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:12308: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:12309: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:12310: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:12311: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:12312: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:12313: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:12314: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:12315: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:12316: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:12317: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:12318: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:12319: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:12320: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:12321: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:12322: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:12323: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:12796: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:12797: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:12798: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:12799: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:12800: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:12801: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:12802: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:12803: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:12804: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:12805: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:12806: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:12807: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:13079: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:13080: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:13081: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:13082: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:13083: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:13084: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:13085: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:13086: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:13087: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:13088: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:13089: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:13090: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:13329: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:13330: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:13331: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:13332: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:13333: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:13334: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:13335: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:13336: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:13337: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:13338: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:13339: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:13340: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:13341: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:13342: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:13343: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:13344: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:13345: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:13346: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:13347: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:13348: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:13349: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:13350: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:13351: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:13352: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:13825: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:13826: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:13827: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:13828: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:13829: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:13830: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:13831: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:13832: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:13833: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:13834: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:13835: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:13836: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:14108: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:14109: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:14110: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:14111: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:14112: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:14113: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:14114: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:14115: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:14116: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:14117: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:14118: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:14119: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:14358: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:14359: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:14360: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:14361: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:14362: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:14363: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:14364: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:14365: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:14366: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:14367: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:14368: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:14369: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:14370: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:14371: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:14372: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:14373: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:14374: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:14375: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:14376: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:14377: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:14378: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:14379: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:14380: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:14381: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:14854: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:14855: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:14856: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:14857: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:14858: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:14859: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:14860: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:14861: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:14862: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:14863: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:14864: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:14865: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:15137: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:15138: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:15139: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:15140: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:15141: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:15142: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:15143: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:15144: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:15145: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:15146: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:15147: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:15148: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:15387: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:15388: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:15389: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:15390: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:15391: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:15392: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:15393: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:15394: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:15395: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:15396: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:15397: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:15398: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:15399: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:15400: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:15401: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:15402: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:15403: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:15404: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:15405: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:15406: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:15407: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:15408: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:15409: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:15410: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:15883: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:15884: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:15885: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:15886: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:15887: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:15888: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:15889: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:15890: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:15891: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:15892: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:15893: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:15894: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:16166: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:16167: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:16168: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:16169: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:16170: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:16171: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:16172: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:16173: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:16174: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:16175: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:16176: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:16177: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:16416: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:16417: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:16418: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:16419: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:16420: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:16421: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:16422: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:16423: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:16424: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:16425: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:16426: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:16427: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:16428: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:16429: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:16430: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:16431: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:16432: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:16433: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:16434: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:16435: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:16436: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:16437: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:16438: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:16439: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:16912: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:16913: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:16914: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:16915: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:16916: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:16917: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:16918: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:16919: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:16920: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:16921: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:16922: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:16923: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:17195: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:17196: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:17197: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:17198: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:17199: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:17200: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:17201: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:17202: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:17203: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:17204: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:17205: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:17206: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:17445: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:17446: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:17447: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:17448: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:17449: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:17450: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:17451: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:17452: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:17453: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:17454: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:17455: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:17456: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:17457: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:17458: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:17459: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:17460: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:17461: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:17462: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:17463: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:17464: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:17465: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:17466: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:17467: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:17468: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:17941: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:17942: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:17943: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:17944: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:17945: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:17946: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:17947: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:17948: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:17949: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:17950: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:17951: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:17952: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:18224: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:18225: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:18226: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:18227: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:18228: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:18229: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:18230: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:18231: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:18232: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:18233: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:18234: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:18235: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:18474: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:18475: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:18476: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:18477: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:18478: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:18479: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:18480: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:18481: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:18482: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:18483: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:18484: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:18485: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:18486: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:18487: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:18488: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:18489: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:18490: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:18491: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:18492: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:18493: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:18494: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:18495: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:18496: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:18497: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:18970: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:18971: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:18972: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:18973: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:18974: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:18975: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:18976: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:18977: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:18978: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:18979: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:18980: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:18981: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:19253: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:19254: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:19255: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:19256: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:19257: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:19258: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:19259: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:19260: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:19261: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:19262: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:19263: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:19264: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:19503: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:19504: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:19505: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:19506: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:19507: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:19508: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:19509: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:19510: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:19511: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:19512: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:19513: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:19514: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:19515: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:19516: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:19517: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:19518: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:19519: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:19520: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:19521: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:19522: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:19523: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:19524: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:19525: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:19526: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:19999: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:20000: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:20001: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:20002: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:20003: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:20004: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:20005: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:20006: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:20007: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:20008: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:20009: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:20010: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:20282: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:20283: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:20284: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:20285: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:20286: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:20287: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:20288: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:20289: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:20290: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:20291: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:20292: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:20293: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:20532: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:20533: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:20534: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:20535: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:20536: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:20537: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:20538: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:20539: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:20540: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:20541: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:20542: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:20543: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:20544: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:20545: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:20546: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:20547: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:20548: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:20549: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:20550: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:20551: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:20552: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:20553: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:20554: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:20555: SER ==> SET
data/biojava-live-1.7.1/tests/files/1tap.pdb:20716: CONECT ==> CONNECT
data/biojava-live-1.7.1/tests/files/1tap.pdb:20717: CONECT ==> CONNECT
data/biojava-live-1.7.1/tests/files/1tap.pdb:20718: CONECT ==> CONNECT
data/biojava-live-1.7.1/tests/files/1tap.pdb:20719: CONECT ==> CONNECT
data/biojava-live-1.7.1/tests/files/1tap.pdb:20720: CONECT ==> CONNECT
data/biojava-live-1.7.1/tests/files/1tap.pdb:20721: CONECT ==> CONNECT
data/biojava-live-1.7.1/tests/files/1tap.pdb:20722: CONECT ==> CONNECT
data/biojava-live-1.7.1/tests/files/1tap.pdb:20723: CONECT ==> CONNECT
data/biojava-live-1.7.1/tests/files/1tap.pdb:20724: CONECT ==> CONNECT
data/biojava-live-1.7.1/tests/files/1tap.pdb:20725: CONECT ==> CONNECT
data/biojava-live-1.7.1/tests/files/1tap.pdb:20726: CONECT ==> CONNECT
data/biojava-live-1.7.1/tests/files/1tap.pdb:20727: CONECT ==> CONNECT
data/biojava-live-1.7.1/tests/files/1tap.pdb:20728: CONECT ==> CONNECT
data/biojava-live-1.7.1/tests/files/1tap.pdb:20729: CONECT ==> CONNECT
data/biojava-live-1.7.1/tests/files/1tap.pdb:20730: CONECT ==> CONNECT
data/biojava-live-1.7.1/tests/files/1tap.pdb:20731: CONECT ==> CONNECT
data/biojava-live-1.7.1/tests/files/1tap.pdb:20732: CONECT ==> CONNECT
data/biojava-live-1.7.1/tests/files/1tap.pdb:20733: CONECT ==> CONNECT
data/biojava-live-1.7.1/tests/files/1tap.pdb:20734: CONECT ==> CONNECT
data/biojava-live-1.7.1/tests/files/1tap.pdb:20735: CONECT ==> CONNECT
data/biojava-live-1.7.1/tests/files/1tap.pdb:20736: CONECT ==> CONNECT
data/biojava-live-1.7.1/tests/files/1tap.pdb:20737: CONECT ==> CONNECT
data/biojava-live-1.7.1/tests/files/1tap.pdb:20738: CONECT ==> CONNECT
data/biojava-live-1.7.1/tests/files/1tap.pdb:20739: CONECT ==> CONNECT
data/biojava-live-1.7.1/tests/files/1tap.pdb:20740: CONECT ==> CONNECT
data/biojava-live-1.7.1/tests/files/1tap.pdb:20741: CONECT ==> CONNECT
data/biojava-live-1.7.1/tests/files/1tap.pdb:20742: CONECT ==> CONNECT
data/biojava-live-1.7.1/tests/files/1tap.pdb:20743: CONECT ==> CONNECT
data/biojava-live-1.7.1/tests/files/1tap.pdb:20744: CONECT ==> CONNECT
data/biojava-live-1.7.1/tests/files/1tap.pdb:20745: CONECT ==> CONNECT
data/biojava-live-1.7.1/tests/files/1tap.pdb:20746: CONECT ==> CONNECT
data/biojava-live-1.7.1/tests/files/1tap.pdb:20747: CONECT ==> CONNECT
data/biojava-live-1.7.1/tests/files/1tap.pdb:20748: CONECT ==> CONNECT
data/biojava-live-1.7.1/tests/files/1tap.pdb:20749: CONECT ==> CONNECT
data/biojava-live-1.7.1/tests/files/1tap.pdb:20750: CONECT ==> CONNECT
data/biojava-live-1.7.1/tests/files/1tap.pdb:20751: CONECT ==> CONNECT
data/biojava-live-1.7.1/tests/files/1tap.pdb:20752: CONECT ==> CONNECT
data/biojava-live-1.7.1/tests/files/1tap.pdb:20753: CONECT ==> CONNECT
data/biojava-live-1.7.1/tests/files/1tap.pdb:20754: CONECT ==> CONNECT
data/biojava-live-1.7.1/tests/files/1tap.pdb:20755: CONECT ==> CONNECT
data/biojava-live-1.7.1/tests/files/1tap.pdb:20756: CONECT ==> CONNECT
data/biojava-live-1.7.1/tests/files/1tap.pdb:20757: CONECT ==> CONNECT
data/biojava-live-1.7.1/tests/files/1tap.pdb:20758: CONECT ==> CONNECT
data/biojava-live-1.7.1/tests/files/1tap.pdb:20759: CONECT ==> CONNECT
data/biojava-live-1.7.1/tests/files/1tap.pdb:20760: CONECT ==> CONNECT
data/biojava-live-1.7.1/tests/files/1tap.pdb:20761: CONECT ==> CONNECT
data/biojava-live-1.7.1/tests/files/1tap.pdb:20762: CONECT ==> CONNECT
data/biojava-live-1.7.1/tests/files/1tap.pdb:20763: CONECT ==> CONNECT
data/biojava-live-1.7.1/tests/files/1tap.pdb:20764: CONECT ==> CONNECT
data/biojava-live-1.7.1/tests/files/1tap.pdb:20765: CONECT ==> CONNECT
data/biojava-live-1.7.1/tests/files/1tap.pdb:20766: CONECT ==> CONNECT
data/biojava-live-1.7.1/tests/files/1tap.pdb:20767: CONECT ==> CONNECT
data/biojava-live-1.7.1/tests/files/1tap.pdb:20768: CONECT ==> CONNECT
data/biojava-live-1.7.1/tests/files/1tap.pdb:20769: CONECT ==> CONNECT
data/biojava-live-1.7.1/tests/files/1tap.pdb:20770: CONECT ==> CONNECT
data/biojava-live-1.7.1/tests/files/1tap.pdb:20771: CONECT ==> CONNECT
data/biojava-live-1.7.1/tests/files/1tap.pdb:20772: CONECT ==> CONNECT
data/biojava-live-1.7.1/tests/files/1tap.pdb:20773: CONECT ==> CONNECT
data/biojava-live-1.7.1/tests/files/5pti.cif:172: SER ==> SET
data/biojava-live-1.7.1/tests/files/5pti.cif:280: SER ==> SET
data/biojava-live-1.7.1/tests/files/5pti.cif:283: UNX ==> UNIX
data/biojava-live-1.7.1/tests/files/5pti.cif:402: SER ==> SET
data/biojava-live-1.7.1/tests/files/5pti.cif:402: SER ==> SET
data/biojava-live-1.7.1/tests/files/5pti.cif:515: UNX ==> UNIX
data/biojava-live-1.7.1/tests/files/5pti.cif:1369: SER ==> SET
data/biojava-live-1.7.1/tests/files/5pti.cif:1369: SER ==> SET
data/biojava-live-1.7.1/tests/files/5pti.cif:1370: SER ==> SET
data/biojava-live-1.7.1/tests/files/5pti.cif:1370: SER ==> SET
data/biojava-live-1.7.1/tests/files/5pti.cif:1371: SER ==> SET
data/biojava-live-1.7.1/tests/files/5pti.cif:1371: SER ==> SET
data/biojava-live-1.7.1/tests/files/5pti.cif:1372: SER ==> SET
data/biojava-live-1.7.1/tests/files/5pti.cif:1372: SER ==> SET
data/biojava-live-1.7.1/tests/files/5pti.cif:1373: SER ==> SET
data/biojava-live-1.7.1/tests/files/5pti.cif:1373: SER ==> SET
data/biojava-live-1.7.1/tests/files/5pti.cif:1374: SER ==> SET
data/biojava-live-1.7.1/tests/files/5pti.cif:1374: SER ==> SET
data/biojava-live-1.7.1/tests/files/5pti.cif:1375: SER ==> SET
data/biojava-live-1.7.1/tests/files/5pti.cif:1375: SER ==> SET
data/biojava-live-1.7.1/tests/files/5pti.cif:1376: SER ==> SET
data/biojava-live-1.7.1/tests/files/5pti.cif:1376: SER ==> SET
data/biojava-live-1.7.1/tests/files/5pti.cif:1377: SER ==> SET
data/biojava-live-1.7.1/tests/files/5pti.cif:1377: SER ==> SET
data/biojava-live-1.7.1/tests/files/5pti.cif:1378: SER ==> SET
data/biojava-live-1.7.1/tests/files/5pti.cif:1378: SER ==> SET
data/biojava-live-1.7.1/tests/files/5pti.cif:1379: SER ==> SET
data/biojava-live-1.7.1/tests/files/5pti.cif:1379: SER ==> SET
data/biojava-live-1.7.1/tests/files/5pti.cif:1530: UNX ==> UNIX
data/biojava-live-1.7.1/tests/files/5pti.cif:1530: UNX ==> UNIX
data/biojava-live-1.7.1/tests/files/5pti.cif:1780: SER ==> SET
data/biojava-live-1.7.1/tests/files/5pti.cif:1780: SER ==> SET
data/biojava-live-1.7.1/tests/files/5pti.cif:1780: SER ==> SET
data/biojava-live-1.7.1/tests/files/5pti.cif:1832: UNX ==> UNIX
data/biojava-live-1.7.1/tests/files/5pti.cif:1847: UNX ==> UNIX
data/biojava-live-1.7.1/tests/files/5pti.cif:1847: UNX ==> UNIX
data/biojava-live-1.7.1/tests/files/5pti.cif:2003: UNX ==> UNIX
data/biojava-live-1.7.1/tests/files/1j59.cif:191: SER ==> SET
data/biojava-live-1.7.1/tests/files/1j59.cif:200: SER ==> SET
data/biojava-live-1.7.1/tests/files/1j59.cif:202: SER ==> SET
data/biojava-live-1.7.1/tests/files/1j59.cif:221: SER ==> SET
data/biojava-live-1.7.1/tests/files/1j59.cif:237: SER ==> SET
data/biojava-live-1.7.1/tests/files/1j59.cif:258: SER ==> SET
data/biojava-live-1.7.1/tests/files/1j59.cif:273: SER ==> SET
data/biojava-live-1.7.1/tests/files/1j59.cif:292: SER ==> SET
data/biojava-live-1.7.1/tests/files/1j59.cif:303: SER ==> SET
data/biojava-live-1.7.1/tests/files/1j59.cif:354: SER ==> SET
data/biojava-live-1.7.1/tests/files/1j59.cif:372: SER ==> SET
data/biojava-live-1.7.1/tests/files/1j59.cif:482: SER ==> SET
data/biojava-live-1.7.1/tests/files/1j59.cif:737: SER ==> SET
data/biojava-live-1.7.1/tests/files/1j59.cif:737: SER ==> SET
data/biojava-live-1.7.1/tests/files/1j59.cif:924: SER ==> SET
data/biojava-live-1.7.1/tests/files/1j59.cif:924: SER ==> SET
data/biojava-live-1.7.1/tests/files/1j59.cif:927: SER ==> SET
data/biojava-live-1.7.1/tests/files/1j59.cif:927: SER ==> SET
data/biojava-live-1.7.1/tests/files/1j59.cif:932: SER ==> SET
data/biojava-live-1.7.1/tests/files/1j59.cif:932: SER ==> SET
data/biojava-live-1.7.1/tests/files/1j59.cif:959: SER ==> SET
data/biojava-live-1.7.1/tests/files/1j59.cif:959: SER ==> SET
data/biojava-live-1.7.1/tests/files/1j59.cif:964: SER ==> SET
data/biojava-live-1.7.1/tests/files/1j59.cif:964: SER ==> SET
data/biojava-live-1.7.1/tests/files/1j59.cif:990: SER ==> SET
data/biojava-live-1.7.1/tests/files/1j59.cif:990: SER ==> SET
data/biojava-live-1.7.1/tests/files/1j59.cif:996: SER ==> SET
data/biojava-live-1.7.1/tests/files/1j59.cif:996: SER ==> SET
data/biojava-live-1.7.1/tests/files/1j59.cif:1006: SER ==> SET
data/biojava-live-1.7.1/tests/files/1j59.cif:1006: SER ==> SET
data/biojava-live-1.7.1/tests/files/1j59.cif:1009: SER ==> SET
data/biojava-live-1.7.1/tests/files/1j59.cif:1009: SER ==> SET
data/biojava-live-1.7.1/tests/files/1j59.cif:2401: SER ==> SET
data/biojava-live-1.7.1/tests/files/1j59.cif:2401: SER ==> SET
data/biojava-live-1.7.1/tests/files/1j59.cif:2402: SER ==> SET
data/biojava-live-1.7.1/tests/files/1j59.cif:2402: SER ==> SET
data/biojava-live-1.7.1/tests/files/1j59.cif:2403: SER ==> SET
data/biojava-live-1.7.1/tests/files/1j59.cif:2403: SER ==> SET
data/biojava-live-1.7.1/tests/files/1j59.cif:2404: SER ==> SET
data/biojava-live-1.7.1/tests/files/1j59.cif:2404: SER ==> SET
data/biojava-live-1.7.1/tests/files/1j59.cif:2405: SER ==> SET
data/biojava-live-1.7.1/tests/files/1j59.cif:2405: SER ==> SET
data/biojava-live-1.7.1/tests/files/1j59.cif:2406: SER ==> SET
data/biojava-live-1.7.1/tests/files/1j59.cif:2406: SER ==> SET
data/biojava-live-1.7.1/tests/files/1j59.cif:2479: SER ==> SET
data/biojava-live-1.7.1/tests/files/1j59.cif:2479: SER ==> SET
data/biojava-live-1.7.1/tests/files/1j59.cif:2480: SER ==> SET
data/biojava-live-1.7.1/tests/files/1j59.cif:2480: SER ==> SET
data/biojava-live-1.7.1/tests/files/1j59.cif:2481: SER ==> SET
data/biojava-live-1.7.1/tests/files/1j59.cif:2481: SER ==> SET
data/biojava-live-1.7.1/tests/files/1j59.cif:2482: SER ==> SET
data/biojava-live-1.7.1/tests/files/1j59.cif:2482: SER ==> SET
data/biojava-live-1.7.1/tests/files/1j59.cif:2483: SER ==> SET
data/biojava-live-1.7.1/tests/files/1j59.cif:2483: SER ==> SET
data/biojava-live-1.7.1/tests/files/1j59.cif:2484: SER ==> SET
data/biojava-live-1.7.1/tests/files/1j59.cif:2484: SER ==> SET
data/biojava-live-1.7.1/tests/files/1j59.cif:2494: SER ==> SET
data/biojava-live-1.7.1/tests/files/1j59.cif:2494: SER ==> SET
data/biojava-live-1.7.1/tests/files/1j59.cif:2495: SER ==> SET
data/biojava-live-1.7.1/tests/files/1j59.cif:2495: SER ==> SET
data/biojava-live-1.7.1/tests/files/1j59.cif:2496: SER ==> SET
data/biojava-live-1.7.1/tests/files/1j59.cif:2496: SER ==> SET
data/biojava-live-1.7.1/tests/files/1j59.cif:2497: SER ==> SET
data/biojava-live-1.7.1/tests/files/1j59.cif:2497: SER ==> SET
data/biojava-live-1.7.1/tests/files/1j59.cif:2498: SER ==> SET
data/biojava-live-1.7.1/tests/files/1j59.cif:2498: SER ==> SET
data/biojava-live-1.7.1/tests/files/1j59.cif:2499: SER ==> SET
data/biojava-live-1.7.1/tests/files/1j59.cif:2499: SER ==> SET
data/biojava-live-1.7.1/tests/files/1j59.cif:2645: SER ==> SET
data/biojava-live-1.7.1/tests/files/1j59.cif:2645: SER ==> SET
data/biojava-live-1.7.1/tests/files/1j59.cif:2646: SER ==> SET
data/biojava-live-1.7.1/tests/files/1j59.cif:2646: SER ==> SET
data/biojava-live-1.7.1/tests/files/1j59.cif:2647: SER ==> SET
data/biojava-live-1.7.1/tests/files/1j59.cif:2647: SER ==> SET
data/biojava-live-1.7.1/tests/files/1j59.cif:2648: SER ==> SET
data/biojava-live-1.7.1/tests/files/1j59.cif:2648: SER ==> SET
data/biojava-live-1.7.1/tests/files/1j59.cif:2649: SER ==> SET
data/biojava-live-1.7.1/tests/files/1j59.cif:2649: SER ==> SET
data/biojava-live-1.7.1/tests/files/1j59.cif:2650: SER ==> SET
data/biojava-live-1.7.1/tests/files/1j59.cif:2650: SER ==> SET
data/biojava-live-1.7.1/tests/files/1j59.cif:2767: SER ==> SET
data/biojava-live-1.7.1/tests/files/1j59.cif:2767: SER ==> SET
data/biojava-live-1.7.1/tests/files/1j59.cif:2768: SER ==> SET
data/biojava-live-1.7.1/tests/files/1j59.cif:2768: SER ==> SET
data/biojava-live-1.7.1/tests/files/1j59.cif:2769: SER ==> SET
data/biojava-live-1.7.1/tests/files/1j59.cif:2769: SER ==> SET
data/biojava-live-1.7.1/tests/files/1j59.cif:2770: SER ==> SET
data/biojava-live-1.7.1/tests/files/1j59.cif:2770: SER ==> SET
data/biojava-live-1.7.1/tests/files/1j59.cif:2771: SER ==> SET
data/biojava-live-1.7.1/tests/files/1j59.cif:2771: SER ==> SET
data/biojava-live-1.7.1/tests/files/1j59.cif:2772: SER ==> SET
data/biojava-live-1.7.1/tests/files/1j59.cif:2772: SER ==> SET
data/biojava-live-1.7.1/tests/files/1j59.cif:2936: SER ==> SET
data/biojava-live-1.7.1/tests/files/1j59.cif:2936: SER ==> SET
data/biojava-live-1.7.1/tests/files/1j59.cif:2937: SER ==> SET
data/biojava-live-1.7.1/tests/files/1j59.cif:2937: SER ==> SET
data/biojava-live-1.7.1/tests/files/1j59.cif:2938: SER ==> SET
data/biojava-live-1.7.1/tests/files/1j59.cif:2938: SER ==> SET
data/biojava-live-1.7.1/tests/files/1j59.cif:2939: SER ==> SET
data/biojava-live-1.7.1/tests/files/1j59.cif:2939: SER ==> SET
data/biojava-live-1.7.1/tests/files/1j59.cif:2940: SER ==> SET
data/biojava-live-1.7.1/tests/files/1j59.cif:2940: SER ==> SET
data/biojava-live-1.7.1/tests/files/1j59.cif:2941: SER ==> SET
data/biojava-live-1.7.1/tests/files/1j59.cif:2941: SER ==> SET
data/biojava-live-1.7.1/tests/files/1j59.cif:3049: SER ==> SET
data/biojava-live-1.7.1/tests/files/1j59.cif:3049: SER ==> SET
data/biojava-live-1.7.1/tests/files/1j59.cif:3050: SER ==> SET
data/biojava-live-1.7.1/tests/files/1j59.cif:3050: SER ==> SET
data/biojava-live-1.7.1/tests/files/1j59.cif:3051: SER ==> SET
data/biojava-live-1.7.1/tests/files/1j59.cif:3051: SER ==> SET
data/biojava-live-1.7.1/tests/files/1j59.cif:3052: SER ==> SET
data/biojava-live-1.7.1/tests/files/1j59.cif:3052: SER ==> SET
data/biojava-live-1.7.1/tests/files/1j59.cif:3053: SER ==> SET
data/biojava-live-1.7.1/tests/files/1j59.cif:3053: SER ==> SET
data/biojava-live-1.7.1/tests/files/1j59.cif:3054: SER ==> SET
data/biojava-live-1.7.1/tests/files/1j59.cif:3054: SER ==> SET
data/biojava-live-1.7.1/tests/files/1j59.cif:3214: SER ==> SET
data/biojava-live-1.7.1/tests/files/1j59.cif:3214: SER ==> SET
data/biojava-live-1.7.1/tests/files/1j59.cif:3215: SER ==> SET
data/biojava-live-1.7.1/tests/files/1j59.cif:3215: SER ==> SET
data/biojava-live-1.7.1/tests/files/1j59.cif:3216: SER ==> SET
data/biojava-live-1.7.1/tests/files/1j59.cif:3216: SER ==> SET
data/biojava-live-1.7.1/tests/files/1j59.cif:3217: SER ==> SET
data/biojava-live-1.7.1/tests/files/1j59.cif:3217: SER ==> SET
data/biojava-live-1.7.1/tests/files/1j59.cif:3218: SER ==> SET
data/biojava-live-1.7.1/tests/files/1j59.cif:3218: SER ==> SET
data/biojava-live-1.7.1/tests/files/1j59.cif:3219: SER ==> SET
data/biojava-live-1.7.1/tests/files/1j59.cif:3219: SER ==> SET
data/biojava-live-1.7.1/tests/files/1j59.cif:3300: SER ==> SET
data/biojava-live-1.7.1/tests/files/1j59.cif:3300: SER ==> SET
data/biojava-live-1.7.1/tests/files/1j59.cif:3301: SER ==> SET
data/biojava-live-1.7.1/tests/files/1j59.cif:3301: SER ==> SET
data/biojava-live-1.7.1/tests/files/1j59.cif:3302: SER ==> SET
data/biojava-live-1.7.1/tests/files/1j59.cif:3302: SER ==> SET
data/biojava-live-1.7.1/tests/files/1j59.cif:3303: SER ==> SET
data/biojava-live-1.7.1/tests/files/1j59.cif:3303: SER ==> SET
data/biojava-live-1.7.1/tests/files/1j59.cif:3304: SER ==> SET
data/biojava-live-1.7.1/tests/files/1j59.cif:3304: SER ==> SET
data/biojava-live-1.7.1/tests/files/1j59.cif:3305: SER ==> SET
data/biojava-live-1.7.1/tests/files/1j59.cif:3305: SER ==> SET
data/biojava-live-1.7.1/tests/files/1j59.cif:3684: SER ==> SET
data/biojava-live-1.7.1/tests/files/1j59.cif:3684: SER ==> SET
data/biojava-live-1.7.1/tests/files/1j59.cif:3685: SER ==> SET
data/biojava-live-1.7.1/tests/files/1j59.cif:3685: SER ==> SET
data/biojava-live-1.7.1/tests/files/1j59.cif:3686: SER ==> SET
data/biojava-live-1.7.1/tests/files/1j59.cif:3686: SER ==> SET
data/biojava-live-1.7.1/tests/files/1j59.cif:3687: SER ==> SET
data/biojava-live-1.7.1/tests/files/1j59.cif:3687: SER ==> SET
data/biojava-live-1.7.1/tests/files/1j59.cif:3688: SER ==> SET
data/biojava-live-1.7.1/tests/files/1j59.cif:3688: SER ==> SET
data/biojava-live-1.7.1/tests/files/1j59.cif:3689: SER ==> SET
data/biojava-live-1.7.1/tests/files/1j59.cif:3689: SER ==> SET
data/biojava-live-1.7.1/tests/files/1j59.cif:3830: SER ==> SET
data/biojava-live-1.7.1/tests/files/1j59.cif:3830: SER ==> SET
data/biojava-live-1.7.1/tests/files/1j59.cif:3831: SER ==> SET
data/biojava-live-1.7.1/tests/files/1j59.cif:3831: SER ==> SET
data/biojava-live-1.7.1/tests/files/1j59.cif:3832: SER ==> SET
data/biojava-live-1.7.1/tests/files/1j59.cif:3832: SER ==> SET
data/biojava-live-1.7.1/tests/files/1j59.cif:3833: SER ==> SET
data/biojava-live-1.7.1/tests/files/1j59.cif:3833: SER ==> SET
data/biojava-live-1.7.1/tests/files/1j59.cif:3834: SER ==> SET
data/biojava-live-1.7.1/tests/files/1j59.cif:3834: SER ==> SET
data/biojava-live-1.7.1/tests/files/1j59.cif:3835: SER ==> SET
data/biojava-live-1.7.1/tests/files/1j59.cif:3835: SER ==> SET
data/biojava-live-1.7.1/tests/files/1j59.cif:3973: SER ==> SET
data/biojava-live-1.7.1/tests/files/1j59.cif:3973: SER ==> SET
data/biojava-live-1.7.1/tests/files/1j59.cif:3974: SER ==> SET
data/biojava-live-1.7.1/tests/files/1j59.cif:3974: SER ==> SET
data/biojava-live-1.7.1/tests/files/1j59.cif:3975: SER ==> SET
data/biojava-live-1.7.1/tests/files/1j59.cif:3975: SER ==> SET
data/biojava-live-1.7.1/tests/files/1j59.cif:3976: SER ==> SET
data/biojava-live-1.7.1/tests/files/1j59.cif:3976: SER ==> SET
data/biojava-live-1.7.1/tests/files/1j59.cif:3977: SER ==> SET
data/biojava-live-1.7.1/tests/files/1j59.cif:3977: SER ==> SET
data/biojava-live-1.7.1/tests/files/1j59.cif:3978: SER ==> SET
data/biojava-live-1.7.1/tests/files/1j59.cif:3978: SER ==> SET
data/biojava-live-1.7.1/tests/files/1j59.cif:4051: SER ==> SET
data/biojava-live-1.7.1/tests/files/1j59.cif:4051: SER ==> SET
data/biojava-live-1.7.1/tests/files/1j59.cif:4052: SER ==> SET
data/biojava-live-1.7.1/tests/files/1j59.cif:4052: SER ==> SET
data/biojava-live-1.7.1/tests/files/1j59.cif:4053: SER ==> SET
data/biojava-live-1.7.1/tests/files/1j59.cif:4053: SER ==> SET
data/biojava-live-1.7.1/tests/files/1j59.cif:4054: SER ==> SET
data/biojava-live-1.7.1/tests/files/1j59.cif:4054: SER ==> SET
data/biojava-live-1.7.1/tests/files/1j59.cif:4055: SER ==> SET
data/biojava-live-1.7.1/tests/files/1j59.cif:4055: SER ==> SET
data/biojava-live-1.7.1/tests/files/1j59.cif:4056: SER ==> SET
data/biojava-live-1.7.1/tests/files/1j59.cif:4056: SER ==> SET
data/biojava-live-1.7.1/tests/files/1j59.cif:4066: SER ==> SET
data/biojava-live-1.7.1/tests/files/1j59.cif:4066: SER ==> SET
data/biojava-live-1.7.1/tests/files/1j59.cif:4067: SER ==> SET
data/biojava-live-1.7.1/tests/files/1j59.cif:4067: SER ==> SET
data/biojava-live-1.7.1/tests/files/1j59.cif:4068: SER ==> SET
data/biojava-live-1.7.1/tests/files/1j59.cif:4068: SER ==> SET
data/biojava-live-1.7.1/tests/files/1j59.cif:4069: SER ==> SET
data/biojava-live-1.7.1/tests/files/1j59.cif:4069: SER ==> SET
data/biojava-live-1.7.1/tests/files/1j59.cif:4070: SER ==> SET
data/biojava-live-1.7.1/tests/files/1j59.cif:4070: SER ==> SET
data/biojava-live-1.7.1/tests/files/1j59.cif:4071: SER ==> SET
data/biojava-live-1.7.1/tests/files/1j59.cif:4071: SER ==> SET
data/biojava-live-1.7.1/tests/files/1j59.cif:4217: SER ==> SET
data/biojava-live-1.7.1/tests/files/1j59.cif:4217: SER ==> SET
data/biojava-live-1.7.1/tests/files/1j59.cif:4218: SER ==> SET
data/biojava-live-1.7.1/tests/files/1j59.cif:4218: SER ==> SET
data/biojava-live-1.7.1/tests/files/1j59.cif:4219: SER ==> SET
data/biojava-live-1.7.1/tests/files/1j59.cif:4219: SER ==> SET
data/biojava-live-1.7.1/tests/files/1j59.cif:4220: SER ==> SET
data/biojava-live-1.7.1/tests/files/1j59.cif:4220: SER ==> SET
data/biojava-live-1.7.1/tests/files/1j59.cif:4221: SER ==> SET
data/biojava-live-1.7.1/tests/files/1j59.cif:4221: SER ==> SET
data/biojava-live-1.7.1/tests/files/1j59.cif:4222: SER ==> SET
data/biojava-live-1.7.1/tests/files/1j59.cif:4222: SER ==> SET
data/biojava-live-1.7.1/tests/files/1j59.cif:4339: SER ==> SET
data/biojava-live-1.7.1/tests/files/1j59.cif:4339: SER ==> SET
data/biojava-live-1.7.1/tests/files/1j59.cif:4340: SER ==> SET
data/biojava-live-1.7.1/tests/files/1j59.cif:4340: SER ==> SET
data/biojava-live-1.7.1/tests/files/1j59.cif:4341: SER ==> SET
data/biojava-live-1.7.1/tests/files/1j59.cif:4341: SER ==> SET
data/biojava-live-1.7.1/tests/files/1j59.cif:4342: SER ==> SET
data/biojava-live-1.7.1/tests/files/1j59.cif:4342: SER ==> SET
data/biojava-live-1.7.1/tests/files/1j59.cif:4343: SER ==> SET
data/biojava-live-1.7.1/tests/files/1j59.cif:4343: SER ==> SET
data/biojava-live-1.7.1/tests/files/1j59.cif:4344: SER ==> SET
data/biojava-live-1.7.1/tests/files/1j59.cif:4344: SER ==> SET
data/biojava-live-1.7.1/tests/files/1j59.cif:4508: SER ==> SET
data/biojava-live-1.7.1/tests/files/1j59.cif:4508: SER ==> SET
data/biojava-live-1.7.1/tests/files/1j59.cif:4509: SER ==> SET
data/biojava-live-1.7.1/tests/files/1j59.cif:4509: SER ==> SET
data/biojava-live-1.7.1/tests/files/1j59.cif:4510: SER ==> SET
data/biojava-live-1.7.1/tests/files/1j59.cif:4510: SER ==> SET
data/biojava-live-1.7.1/tests/files/1j59.cif:4511: SER ==> SET
data/biojava-live-1.7.1/tests/files/1j59.cif:4511: SER ==> SET
data/biojava-live-1.7.1/tests/files/1j59.cif:4512: SER ==> SET
data/biojava-live-1.7.1/tests/files/1j59.cif:4512: SER ==> SET
data/biojava-live-1.7.1/tests/files/1j59.cif:4513: SER ==> SET
data/biojava-live-1.7.1/tests/files/1j59.cif:4513: SER ==> SET
data/biojava-live-1.7.1/tests/files/1j59.cif:4621: SER ==> SET
data/biojava-live-1.7.1/tests/files/1j59.cif:4621: SER ==> SET
data/biojava-live-1.7.1/tests/files/1j59.cif:4622: SER ==> SET
data/biojava-live-1.7.1/tests/files/1j59.cif:4622: SER ==> SET
data/biojava-live-1.7.1/tests/files/1j59.cif:4623: SER ==> SET
data/biojava-live-1.7.1/tests/files/1j59.cif:4623: SER ==> SET
data/biojava-live-1.7.1/tests/files/1j59.cif:4624: SER ==> SET
data/biojava-live-1.7.1/tests/files/1j59.cif:4624: SER ==> SET
data/biojava-live-1.7.1/tests/files/1j59.cif:4625: SER ==> SET
data/biojava-live-1.7.1/tests/files/1j59.cif:4625: SER ==> SET
data/biojava-live-1.7.1/tests/files/1j59.cif:4626: SER ==> SET
data/biojava-live-1.7.1/tests/files/1j59.cif:4626: SER ==> SET
data/biojava-live-1.7.1/tests/files/1j59.cif:4786: SER ==> SET
data/biojava-live-1.7.1/tests/files/1j59.cif:4786: SER ==> SET
data/biojava-live-1.7.1/tests/files/1j59.cif:4787: SER ==> SET
data/biojava-live-1.7.1/tests/files/1j59.cif:4787: SER ==> SET
data/biojava-live-1.7.1/tests/files/1j59.cif:4788: SER ==> SET
data/biojava-live-1.7.1/tests/files/1j59.cif:4788: SER ==> SET
data/biojava-live-1.7.1/tests/files/1j59.cif:4789: SER ==> SET
data/biojava-live-1.7.1/tests/files/1j59.cif:4789: SER ==> SET
data/biojava-live-1.7.1/tests/files/1j59.cif:4790: SER ==> SET
data/biojava-live-1.7.1/tests/files/1j59.cif:4790: SER ==> SET
data/biojava-live-1.7.1/tests/files/1j59.cif:4791: SER ==> SET
data/biojava-live-1.7.1/tests/files/1j59.cif:4791: SER ==> SET
data/biojava-live-1.7.1/tests/files/1j59.cif:4872: SER ==> SET
data/biojava-live-1.7.1/tests/files/1j59.cif:4872: SER ==> SET
data/biojava-live-1.7.1/tests/files/1j59.cif:4873: SER ==> SET
data/biojava-live-1.7.1/tests/files/1j59.cif:4873: SER ==> SET
data/biojava-live-1.7.1/tests/files/1j59.cif:4874: SER ==> SET
data/biojava-live-1.7.1/tests/files/1j59.cif:4874: SER ==> SET
data/biojava-live-1.7.1/tests/files/1j59.cif:4875: SER ==> SET
data/biojava-live-1.7.1/tests/files/1j59.cif:4875: SER ==> SET
data/biojava-live-1.7.1/tests/files/1j59.cif:4876: SER ==> SET
data/biojava-live-1.7.1/tests/files/1j59.cif:4876: SER ==> SET
data/biojava-live-1.7.1/tests/files/1j59.cif:4877: SER ==> SET
data/biojava-live-1.7.1/tests/files/1j59.cif:4877: SER ==> SET
data/biojava-live-1.7.1/tests/files/1j59.cif:5256: SER ==> SET
data/biojava-live-1.7.1/tests/files/1j59.cif:5256: SER ==> SET
data/biojava-live-1.7.1/tests/files/1j59.cif:5257: SER ==> SET
data/biojava-live-1.7.1/tests/files/1j59.cif:5257: SER ==> SET
data/biojava-live-1.7.1/tests/files/1j59.cif:5258: SER ==> SET
data/biojava-live-1.7.1/tests/files/1j59.cif:5258: SER ==> SET
data/biojava-live-1.7.1/tests/files/1j59.cif:5259: SER ==> SET
data/biojava-live-1.7.1/tests/files/1j59.cif:5259: SER ==> SET
data/biojava-live-1.7.1/tests/files/1j59.cif:5260: SER ==> SET
data/biojava-live-1.7.1/tests/files/1j59.cif:5260: SER ==> SET
data/biojava-live-1.7.1/tests/files/1j59.cif:5261: SER ==> SET
data/biojava-live-1.7.1/tests/files/1j59.cif:5261: SER ==> SET
data/biojava-live-1.7.1/tests/files/1j59.cif:5402: SER ==> SET
data/biojava-live-1.7.1/tests/files/1j59.cif:5402: SER ==> SET
data/biojava-live-1.7.1/tests/files/1j59.cif:5403: SER ==> SET
data/biojava-live-1.7.1/tests/files/1j59.cif:5403: SER ==> SET
data/biojava-live-1.7.1/tests/files/1j59.cif:5404: SER ==> SET
data/biojava-live-1.7.1/tests/files/1j59.cif:5404: SER ==> SET
data/biojava-live-1.7.1/tests/files/1j59.cif:5405: SER ==> SET
data/biojava-live-1.7.1/tests/files/1j59.cif:5405: SER ==> SET
data/biojava-live-1.7.1/tests/files/1j59.cif:5406: SER ==> SET
data/biojava-live-1.7.1/tests/files/1j59.cif:5406: SER ==> SET
data/biojava-live-1.7.1/tests/files/1j59.cif:5407: SER ==> SET
data/biojava-live-1.7.1/tests/files/1j59.cif:5407: SER ==> SET
data/biojava-live-1.7.1/tests/files/1j59.cif:5884: SER ==> SET
data/biojava-live-1.7.1/tests/files/1j59.cif:5884: SER ==> SET
data/biojava-live-1.7.1/tests/files/1j59.cif:5884: SER ==> SET
data/biojava-live-1.7.1/tests/files/1j59.cif:5893: SER ==> SET
data/biojava-live-1.7.1/tests/files/1j59.cif:5893: SER ==> SET
data/biojava-live-1.7.1/tests/files/1j59.cif:5893: SER ==> SET
data/biojava-live-1.7.1/tests/files/1j59.cif:5895: SER ==> SET
data/biojava-live-1.7.1/tests/files/1j59.cif:5895: SER ==> SET
data/biojava-live-1.7.1/tests/files/1j59.cif:5895: SER ==> SET
data/biojava-live-1.7.1/tests/files/1j59.cif:5914: SER ==> SET
data/biojava-live-1.7.1/tests/files/1j59.cif:5914: SER ==> SET
data/biojava-live-1.7.1/tests/files/1j59.cif:5914: SER ==> SET
data/biojava-live-1.7.1/tests/files/1j59.cif:5930: SER ==> SET
data/biojava-live-1.7.1/tests/files/1j59.cif:5930: SER ==> SET
data/biojava-live-1.7.1/tests/files/1j59.cif:5930: SER ==> SET
data/biojava-live-1.7.1/tests/files/1j59.cif:5951: SER ==> SET
data/biojava-live-1.7.1/tests/files/1j59.cif:5951: SER ==> SET
data/biojava-live-1.7.1/tests/files/1j59.cif:5951: SER ==> SET
data/biojava-live-1.7.1/tests/files/1j59.cif:5966: SER ==> SET
data/biojava-live-1.7.1/tests/files/1j59.cif:5966: SER ==> SET
data/biojava-live-1.7.1/tests/files/1j59.cif:5966: SER ==> SET
data/biojava-live-1.7.1/tests/files/1j59.cif:5985: SER ==> SET
data/biojava-live-1.7.1/tests/files/1j59.cif:5985: SER ==> SET
data/biojava-live-1.7.1/tests/files/1j59.cif:5985: SER ==> SET
data/biojava-live-1.7.1/tests/files/1j59.cif:5996: SER ==> SET
data/biojava-live-1.7.1/tests/files/1j59.cif:5996: SER ==> SET
data/biojava-live-1.7.1/tests/files/1j59.cif:5996: SER ==> SET
data/biojava-live-1.7.1/tests/files/1j59.cif:6047: SER ==> SET
data/biojava-live-1.7.1/tests/files/1j59.cif:6047: SER ==> SET
data/biojava-live-1.7.1/tests/files/1j59.cif:6047: SER ==> SET
data/biojava-live-1.7.1/tests/files/1j59.cif:6065: SER ==> SET
data/biojava-live-1.7.1/tests/files/1j59.cif:6065: SER ==> SET
data/biojava-live-1.7.1/tests/files/1j59.cif:6065: SER ==> SET
data/biojava-live-1.7.1/tests/files/1j59.cif:6093: SER ==> SET
data/biojava-live-1.7.1/tests/files/1j59.cif:6093: SER ==> SET
data/biojava-live-1.7.1/tests/files/1j59.cif:6093: SER ==> SET
data/biojava-live-1.7.1/tests/files/1j59.cif:6102: SER ==> SET
data/biojava-live-1.7.1/tests/files/1j59.cif:6102: SER ==> SET
data/biojava-live-1.7.1/tests/files/1j59.cif:6102: SER ==> SET
data/biojava-live-1.7.1/tests/files/1j59.cif:6104: SER ==> SET
data/biojava-live-1.7.1/tests/files/1j59.cif:6104: SER ==> SET
data/biojava-live-1.7.1/tests/files/1j59.cif:6104: SER ==> SET
data/biojava-live-1.7.1/tests/files/1j59.cif:6123: SER ==> SET
data/biojava-live-1.7.1/tests/files/1j59.cif:6123: SER ==> SET
data/biojava-live-1.7.1/tests/files/1j59.cif:6123: SER ==> SET
data/biojava-live-1.7.1/tests/files/1j59.cif:6139: SER ==> SET
data/biojava-live-1.7.1/tests/files/1j59.cif:6139: SER ==> SET
data/biojava-live-1.7.1/tests/files/1j59.cif:6139: SER ==> SET
data/biojava-live-1.7.1/tests/files/1j59.cif:6160: SER ==> SET
data/biojava-live-1.7.1/tests/files/1j59.cif:6160: SER ==> SET
data/biojava-live-1.7.1/tests/files/1j59.cif:6160: SER ==> SET
data/biojava-live-1.7.1/tests/files/1j59.cif:6175: SER ==> SET
data/biojava-live-1.7.1/tests/files/1j59.cif:6175: SER ==> SET
data/biojava-live-1.7.1/tests/files/1j59.cif:6175: SER ==> SET
data/biojava-live-1.7.1/tests/files/1j59.cif:6194: SER ==> SET
data/biojava-live-1.7.1/tests/files/1j59.cif:6194: SER ==> SET
data/biojava-live-1.7.1/tests/files/1j59.cif:6194: SER ==> SET
data/biojava-live-1.7.1/tests/files/1j59.cif:6205: SER ==> SET
data/biojava-live-1.7.1/tests/files/1j59.cif:6205: SER ==> SET
data/biojava-live-1.7.1/tests/files/1j59.cif:6205: SER ==> SET
data/biojava-live-1.7.1/tests/files/1j59.cif:6256: SER ==> SET
data/biojava-live-1.7.1/tests/files/1j59.cif:6256: SER ==> SET
data/biojava-live-1.7.1/tests/files/1j59.cif:6256: SER ==> SET
data/biojava-live-1.7.1/tests/files/1j59.cif:6274: SER ==> SET
data/biojava-live-1.7.1/tests/files/1j59.cif:6274: SER ==> SET
data/biojava-live-1.7.1/tests/files/1j59.cif:6274: SER ==> SET
data/biojava-live-1.7.1/tests/files/1j59.cif:6937: SER ==> SET
data/biojava-live-1.7.1/tests/files/AAL039263.em:22: Wan ==> Want
data/biojava-live-1.7.1/tests/files/AAL039263.em:72: Wan ==> Want
data/biojava-live-1.7.1/tests/files/AAL039263.em:81: Wan ==> Want
data/biojava-live-1.7.1/tests/files/2gox.pdb:421: SER ==> SET
data/biojava-live-1.7.1/tests/files/2gox.pdb:428: SER ==> SET
data/biojava-live-1.7.1/tests/files/2gox.pdb:448: SER ==> SET
data/biojava-live-1.7.1/tests/files/2gox.pdb:450: SER ==> SET
data/biojava-live-1.7.1/tests/files/2gox.pdb:454: SER ==> SET
data/biojava-live-1.7.1/tests/files/2gox.pdb:456: SER ==> SET
data/biojava-live-1.7.1/tests/files/2gox.pdb:459: SER ==> SET
data/biojava-live-1.7.1/tests/files/2gox.pdb:459: SER ==> SET
data/biojava-live-1.7.1/tests/files/2gox.pdb:460: SER ==> SET
data/biojava-live-1.7.1/tests/files/2gox.pdb:464: SER ==> SET
data/biojava-live-1.7.1/tests/files/2gox.pdb:464: SER ==> SET
data/biojava-live-1.7.1/tests/files/2gox.pdb:465: SER ==> SET
data/biojava-live-1.7.1/tests/files/2gox.pdb:466: SER ==> SET
data/biojava-live-1.7.1/tests/files/2gox.pdb:467: SER ==> SET
data/biojava-live-1.7.1/tests/files/2gox.pdb:471: SER ==> SET
data/biojava-live-1.7.1/tests/files/2gox.pdb:472: SER ==> SET
data/biojava-live-1.7.1/tests/files/2gox.pdb:472: SER ==> SET
data/biojava-live-1.7.1/tests/files/2gox.pdb:474: SER ==> SET
data/biojava-live-1.7.1/tests/files/2gox.pdb:477: SER ==> SET
data/biojava-live-1.7.1/tests/files/2gox.pdb:480: SER ==> SET
data/biojava-live-1.7.1/tests/files/2gox.pdb:484: SER ==> SET
data/biojava-live-1.7.1/tests/files/2gox.pdb:485: SER ==> SET
data/biojava-live-1.7.1/tests/files/2gox.pdb:487: SER ==> SET
data/biojava-live-1.7.1/tests/files/2gox.pdb:487: SER ==> SET
data/biojava-live-1.7.1/tests/files/2gox.pdb:488: SER ==> SET
data/biojava-live-1.7.1/tests/files/2gox.pdb:492: SER ==> SET
data/biojava-live-1.7.1/tests/files/2gox.pdb:492: SER ==> SET
data/biojava-live-1.7.1/tests/files/2gox.pdb:493: SER ==> SET
data/biojava-live-1.7.1/tests/files/2gox.pdb:494: SER ==> SET
data/biojava-live-1.7.1/tests/files/2gox.pdb:495: SER ==> SET
data/biojava-live-1.7.1/tests/files/2gox.pdb:499: SER ==> SET
data/biojava-live-1.7.1/tests/files/2gox.pdb:500: SER ==> SET
data/biojava-live-1.7.1/tests/files/2gox.pdb:500: SER ==> SET
data/biojava-live-1.7.1/tests/files/2gox.pdb:502: SER ==> SET
data/biojava-live-1.7.1/tests/files/2gox.pdb:505: SER ==> SET
data/biojava-live-1.7.1/tests/files/2gox.pdb:508: SER ==> SET
data/biojava-live-1.7.1/tests/files/2gox.pdb:512: SER ==> SET
data/biojava-live-1.7.1/tests/files/2gox.pdb:513: SER ==> SET
data/biojava-live-1.7.1/tests/files/2gox.pdb:518: SER ==> SET
data/biojava-live-1.7.1/tests/files/2gox.pdb:522: SER ==> SET
data/biojava-live-1.7.1/tests/files/2gox.pdb:537: SER ==> SET
data/biojava-live-1.7.1/tests/files/2gox.pdb:538: SER ==> SET
data/biojava-live-1.7.1/tests/files/2gox.pdb:539: SER ==> SET
data/biojava-live-1.7.1/tests/files/2gox.pdb:540: SER ==> SET
data/biojava-live-1.7.1/tests/files/2gox.pdb:541: SER ==> SET
data/biojava-live-1.7.1/tests/files/2gox.pdb:542: SER ==> SET
data/biojava-live-1.7.1/tests/files/2gox.pdb:554: SER ==> SET
data/biojava-live-1.7.1/tests/files/2gox.pdb:555: SER ==> SET
data/biojava-live-1.7.1/tests/files/2gox.pdb:556: SER ==> SET
data/biojava-live-1.7.1/tests/files/2gox.pdb:557: SER ==> SET
data/biojava-live-1.7.1/tests/files/2gox.pdb:558: SER ==> SET
data/biojava-live-1.7.1/tests/files/2gox.pdb:559: SER ==> SET
data/biojava-live-1.7.1/tests/files/2gox.pdb:664: SER ==> SET
data/biojava-live-1.7.1/tests/files/2gox.pdb:665: SER ==> SET
data/biojava-live-1.7.1/tests/files/2gox.pdb:666: SER ==> SET
data/biojava-live-1.7.1/tests/files/2gox.pdb:667: SER ==> SET
data/biojava-live-1.7.1/tests/files/2gox.pdb:668: SER ==> SET
data/biojava-live-1.7.1/tests/files/2gox.pdb:669: SER ==> SET
data/biojava-live-1.7.1/tests/files/2gox.pdb:1094: SER ==> SET
data/biojava-live-1.7.1/tests/files/2gox.pdb:1095: SER ==> SET
data/biojava-live-1.7.1/tests/files/2gox.pdb:1096: SER ==> SET
data/biojava-live-1.7.1/tests/files/2gox.pdb:1097: SER ==> SET
data/biojava-live-1.7.1/tests/files/2gox.pdb:1098: SER ==> SET
data/biojava-live-1.7.1/tests/files/2gox.pdb:1099: SER ==> SET
data/biojava-live-1.7.1/tests/files/2gox.pdb:1100: SER ==> SET
data/biojava-live-1.7.1/tests/files/2gox.pdb:1101: SER ==> SET
data/biojava-live-1.7.1/tests/files/2gox.pdb:1102: SER ==> SET
data/biojava-live-1.7.1/tests/files/2gox.pdb:1103: SER ==> SET
data/biojava-live-1.7.1/tests/files/2gox.pdb:1104: SER ==> SET
data/biojava-live-1.7.1/tests/files/2gox.pdb:1105: SER ==> SET
data/biojava-live-1.7.1/tests/files/2gox.pdb:1182: SER ==> SET
data/biojava-live-1.7.1/tests/files/2gox.pdb:1183: SER ==> SET
data/biojava-live-1.7.1/tests/files/2gox.pdb:1184: SER ==> SET
data/biojava-live-1.7.1/tests/files/2gox.pdb:1185: SER ==> SET
data/biojava-live-1.7.1/tests/files/2gox.pdb:1186: SER ==> SET
data/biojava-live-1.7.1/tests/files/2gox.pdb:1187: SER ==> SET
data/biojava-live-1.7.1/tests/files/2gox.pdb:1282: SER ==> SET
data/biojava-live-1.7.1/tests/files/2gox.pdb:1283: SER ==> SET
data/biojava-live-1.7.1/tests/files/2gox.pdb:1284: SER ==> SET
data/biojava-live-1.7.1/tests/files/2gox.pdb:1285: SER ==> SET
data/biojava-live-1.7.1/tests/files/2gox.pdb:1286: SER ==> SET
data/biojava-live-1.7.1/tests/files/2gox.pdb:1287: SER ==> SET
data/biojava-live-1.7.1/tests/files/2gox.pdb:1353: SER ==> SET
data/biojava-live-1.7.1/tests/files/2gox.pdb:1354: SER ==> SET
data/biojava-live-1.7.1/tests/files/2gox.pdb:1355: SER ==> SET
data/biojava-live-1.7.1/tests/files/2gox.pdb:1356: SER ==> SET
data/biojava-live-1.7.1/tests/files/2gox.pdb:1357: SER ==> SET
data/biojava-live-1.7.1/tests/files/2gox.pdb:1358: SER ==> SET
data/biojava-live-1.7.1/tests/files/2gox.pdb:1766: SER ==> SET
data/biojava-live-1.7.1/tests/files/2gox.pdb:1767: SER ==> SET
data/biojava-live-1.7.1/tests/files/2gox.pdb:1768: SER ==> SET
data/biojava-live-1.7.1/tests/files/2gox.pdb:1769: SER ==> SET
data/biojava-live-1.7.1/tests/files/2gox.pdb:1770: SER ==> SET
data/biojava-live-1.7.1/tests/files/2gox.pdb:1771: SER ==> SET
data/biojava-live-1.7.1/tests/files/2gox.pdb:1876: SER ==> SET
data/biojava-live-1.7.1/tests/files/2gox.pdb:1877: SER ==> SET
data/biojava-live-1.7.1/tests/files/2gox.pdb:1878: SER ==> SET
data/biojava-live-1.7.1/tests/files/2gox.pdb:1879: SER ==> SET
data/biojava-live-1.7.1/tests/files/2gox.pdb:1880: SER ==> SET
data/biojava-live-1.7.1/tests/files/2gox.pdb:1881: SER ==> SET
data/biojava-live-1.7.1/tests/files/2gox.pdb:1901: SER ==> SET
data/biojava-live-1.7.1/tests/files/2gox.pdb:1902: SER ==> SET
data/biojava-live-1.7.1/tests/files/2gox.pdb:1903: SER ==> SET
data/biojava-live-1.7.1/tests/files/2gox.pdb:1904: SER ==> SET
data/biojava-live-1.7.1/tests/files/2gox.pdb:1905: SER ==> SET
data/biojava-live-1.7.1/tests/files/2gox.pdb:1906: SER ==> SET
data/biojava-live-1.7.1/tests/files/2gox.pdb:2045: SER ==> SET
data/biojava-live-1.7.1/tests/files/2gox.pdb:2046: SER ==> SET
data/biojava-live-1.7.1/tests/files/2gox.pdb:2047: SER ==> SET
data/biojava-live-1.7.1/tests/files/2gox.pdb:2048: SER ==> SET
data/biojava-live-1.7.1/tests/files/2gox.pdb:2049: SER ==> SET
data/biojava-live-1.7.1/tests/files/2gox.pdb:2050: SER ==> SET
data/biojava-live-1.7.1/tests/files/2gox.pdb:2421: SER ==> SET
data/biojava-live-1.7.1/tests/files/2gox.pdb:2422: SER ==> SET
data/biojava-live-1.7.1/tests/files/2gox.pdb:2423: SER ==> SET
data/biojava-live-1.7.1/tests/files/2gox.pdb:2424: SER ==> SET
data/biojava-live-1.7.1/tests/files/2gox.pdb:2425: SER ==> SET
data/biojava-live-1.7.1/tests/files/2gox.pdb:2426: SER ==> SET
data/biojava-live-1.7.1/tests/files/2gox.pdb:2702: SER ==> SET
data/biojava-live-1.7.1/tests/files/2gox.pdb:2703: SER ==> SET
data/biojava-live-1.7.1/tests/files/2gox.pdb:2704: SER ==> SET
data/biojava-live-1.7.1/tests/files/2gox.pdb:2705: SER ==> SET
data/biojava-live-1.7.1/tests/files/2gox.pdb:2706: SER ==> SET
data/biojava-live-1.7.1/tests/files/2gox.pdb:2707: SER ==> SET
data/biojava-live-1.7.1/tests/files/2gox.pdb:3079: SER ==> SET
data/biojava-live-1.7.1/tests/files/2gox.pdb:3080: SER ==> SET
data/biojava-live-1.7.1/tests/files/2gox.pdb:3081: SER ==> SET
data/biojava-live-1.7.1/tests/files/2gox.pdb:3082: SER ==> SET
data/biojava-live-1.7.1/tests/files/2gox.pdb:3083: SER ==> SET
data/biojava-live-1.7.1/tests/files/2gox.pdb:3084: SER ==> SET
data/biojava-live-1.7.1/tests/files/2gox.pdb:3178: SER ==> SET
data/biojava-live-1.7.1/tests/files/2gox.pdb:3179: SER ==> SET
data/biojava-live-1.7.1/tests/files/2gox.pdb:3180: SER ==> SET
data/biojava-live-1.7.1/tests/files/2gox.pdb:3181: SER ==> SET
data/biojava-live-1.7.1/tests/files/2gox.pdb:3182: SER ==> SET
data/biojava-live-1.7.1/tests/files/2gox.pdb:3183: SER ==> SET
data/biojava-live-1.7.1/tests/files/2gox.pdb:3379: SER ==> SET
data/biojava-live-1.7.1/tests/files/2gox.pdb:3380: SER ==> SET
data/biojava-live-1.7.1/tests/files/2gox.pdb:3381: SER ==> SET
data/biojava-live-1.7.1/tests/files/2gox.pdb:3382: SER ==> SET
data/biojava-live-1.7.1/tests/files/2gox.pdb:3383: SER ==> SET
data/biojava-live-1.7.1/tests/files/2gox.pdb:3384: SER ==> SET
data/biojava-live-1.7.1/tests/files/2gox.pdb:3396: SER ==> SET
data/biojava-live-1.7.1/tests/files/2gox.pdb:3397: SER ==> SET
data/biojava-live-1.7.1/tests/files/2gox.pdb:3398: SER ==> SET
data/biojava-live-1.7.1/tests/files/2gox.pdb:3399: SER ==> SET
data/biojava-live-1.7.1/tests/files/2gox.pdb:3400: SER ==> SET
data/biojava-live-1.7.1/tests/files/2gox.pdb:3401: SER ==> SET
data/biojava-live-1.7.1/tests/files/2gox.pdb:3506: SER ==> SET
data/biojava-live-1.7.1/tests/files/2gox.pdb:3507: SER ==> SET
data/biojava-live-1.7.1/tests/files/2gox.pdb:3508: SER ==> SET
data/biojava-live-1.7.1/tests/files/2gox.pdb:3509: SER ==> SET
data/biojava-live-1.7.1/tests/files/2gox.pdb:3510: SER ==> SET
data/biojava-live-1.7.1/tests/files/2gox.pdb:3511: SER ==> SET
data/biojava-live-1.7.1/tests/files/2gox.pdb:3936: SER ==> SET
data/biojava-live-1.7.1/tests/files/2gox.pdb:3937: SER ==> SET
data/biojava-live-1.7.1/tests/files/2gox.pdb:3938: SER ==> SET
data/biojava-live-1.7.1/tests/files/2gox.pdb:3939: SER ==> SET
data/biojava-live-1.7.1/tests/files/2gox.pdb:3940: SER ==> SET
data/biojava-live-1.7.1/tests/files/2gox.pdb:3941: SER ==> SET
data/biojava-live-1.7.1/tests/files/2gox.pdb:3942: SER ==> SET
data/biojava-live-1.7.1/tests/files/2gox.pdb:3943: SER ==> SET
data/biojava-live-1.7.1/tests/files/2gox.pdb:3944: SER ==> SET
data/biojava-live-1.7.1/tests/files/2gox.pdb:3945: SER ==> SET
data/biojava-live-1.7.1/tests/files/2gox.pdb:3946: SER ==> SET
data/biojava-live-1.7.1/tests/files/2gox.pdb:3947: SER ==> SET
data/biojava-live-1.7.1/tests/files/2gox.pdb:4024: SER ==> SET
data/biojava-live-1.7.1/tests/files/2gox.pdb:4025: SER ==> SET
data/biojava-live-1.7.1/tests/files/2gox.pdb:4026: SER ==> SET
data/biojava-live-1.7.1/tests/files/2gox.pdb:4027: SER ==> SET
data/biojava-live-1.7.1/tests/files/2gox.pdb:4028: SER ==> SET
data/biojava-live-1.7.1/tests/files/2gox.pdb:4029: SER ==> SET
data/biojava-live-1.7.1/tests/files/2gox.pdb:4124: SER ==> SET
data/biojava-live-1.7.1/tests/files/2gox.pdb:4125: SER ==> SET
data/biojava-live-1.7.1/tests/files/2gox.pdb:4126: SER ==> SET
data/biojava-live-1.7.1/tests/files/2gox.pdb:4127: SER ==> SET
data/biojava-live-1.7.1/tests/files/2gox.pdb:4128: SER ==> SET
data/biojava-live-1.7.1/tests/files/2gox.pdb:4129: SER ==> SET
data/biojava-live-1.7.1/tests/files/2gox.pdb:4195: SER ==> SET
data/biojava-live-1.7.1/tests/files/2gox.pdb:4196: SER ==> SET
data/biojava-live-1.7.1/tests/files/2gox.pdb:4197: SER ==> SET
data/biojava-live-1.7.1/tests/files/2gox.pdb:4198: SER ==> SET
data/biojava-live-1.7.1/tests/files/2gox.pdb:4199: SER ==> SET
data/biojava-live-1.7.1/tests/files/2gox.pdb:4200: SER ==> SET
data/biojava-live-1.7.1/tests/files/2gox.pdb:4608: SER ==> SET
data/biojava-live-1.7.1/tests/files/2gox.pdb:4609: SER ==> SET
data/biojava-live-1.7.1/tests/files/2gox.pdb:4610: SER ==> SET
data/biojava-live-1.7.1/tests/files/2gox.pdb:4611: SER ==> SET
data/biojava-live-1.7.1/tests/files/2gox.pdb:4612: SER ==> SET
data/biojava-live-1.7.1/tests/files/2gox.pdb:4613: SER ==> SET
data/biojava-live-1.7.1/tests/files/2gox.pdb:4718: SER ==> SET
data/biojava-live-1.7.1/tests/files/2gox.pdb:4719: SER ==> SET
data/biojava-live-1.7.1/tests/files/2gox.pdb:4720: SER ==> SET
data/biojava-live-1.7.1/tests/files/2gox.pdb:4721: SER ==> SET
data/biojava-live-1.7.1/tests/files/2gox.pdb:4722: SER ==> SET
data/biojava-live-1.7.1/tests/files/2gox.pdb:4723: SER ==> SET
data/biojava-live-1.7.1/tests/files/2gox.pdb:4743: SER ==> SET
data/biojava-live-1.7.1/tests/files/2gox.pdb:4744: SER ==> SET
data/biojava-live-1.7.1/tests/files/2gox.pdb:4745: SER ==> SET
data/biojava-live-1.7.1/tests/files/2gox.pdb:4746: SER ==> SET
data/biojava-live-1.7.1/tests/files/2gox.pdb:4747: SER ==> SET
data/biojava-live-1.7.1/tests/files/2gox.pdb:4748: SER ==> SET
data/biojava-live-1.7.1/tests/files/2gox.pdb:4887: SER ==> SET
data/biojava-live-1.7.1/tests/files/2gox.pdb:4888: SER ==> SET
data/biojava-live-1.7.1/tests/files/2gox.pdb:4889: SER ==> SET
data/biojava-live-1.7.1/tests/files/2gox.pdb:4890: SER ==> SET
data/biojava-live-1.7.1/tests/files/2gox.pdb:4891: SER ==> SET
data/biojava-live-1.7.1/tests/files/2gox.pdb:4892: SER ==> SET
data/biojava-live-1.7.1/tests/files/2gox.pdb:5263: SER ==> SET
data/biojava-live-1.7.1/tests/files/2gox.pdb:5264: SER ==> SET
data/biojava-live-1.7.1/tests/files/2gox.pdb:5265: SER ==> SET
data/biojava-live-1.7.1/tests/files/2gox.pdb:5266: SER ==> SET
data/biojava-live-1.7.1/tests/files/2gox.pdb:5267: SER ==> SET
data/biojava-live-1.7.1/tests/files/2gox.pdb:5268: SER ==> SET
data/biojava-live-1.7.1/tests/files/2gox.pdb:5544: SER ==> SET
data/biojava-live-1.7.1/tests/files/2gox.pdb:5545: SER ==> SET
data/biojava-live-1.7.1/tests/files/2gox.pdb:5546: SER ==> SET
data/biojava-live-1.7.1/tests/files/2gox.pdb:5547: SER ==> SET
data/biojava-live-1.7.1/tests/files/2gox.pdb:5548: SER ==> SET
data/biojava-live-1.7.1/tests/files/2gox.pdb:5549: SER ==> SET
data/biojava-live-1.7.1/tests/files/2gox.pdb:5915: SER ==> SET
data/biojava-live-1.7.1/tests/files/2gox.pdb:5916: SER ==> SET
data/biojava-live-1.7.1/tests/files/2gox.pdb:5917: SER ==> SET
data/biojava-live-1.7.1/tests/files/2gox.pdb:5918: SER ==> SET
data/biojava-live-1.7.1/tests/files/2gox.pdb:5919: SER ==> SET
data/biojava-live-1.7.1/tests/files/2gox.pdb:5920: SER ==> SET
data/biojava-live-1.7.1/tests/files/2gox.pdb:6014: SER ==> SET
data/biojava-live-1.7.1/tests/files/2gox.pdb:6015: SER ==> SET
data/biojava-live-1.7.1/tests/files/2gox.pdb:6016: SER ==> SET
data/biojava-live-1.7.1/tests/files/2gox.pdb:6017: SER ==> SET
data/biojava-live-1.7.1/tests/files/2gox.pdb:6018: SER ==> SET
data/biojava-live-1.7.1/tests/files/2gox.pdb:6019: SER ==> SET
data/biojava-live-1.7.1/tests/files/2gox.pdb:6528: CONECT ==> CONNECT
data/biojava-live-1.7.1/tests/files/2gox.pdb:6529: CONECT ==> CONNECT
data/biojava-live-1.7.1/tests/files/2gox.pdb:6530: CONECT ==> CONNECT
data/biojava-live-1.7.1/tests/files/2gox.pdb:6531: CONECT ==> CONNECT
data/biojava-live-1.7.1/tests/files/1a4w.cif:182: SER ==> SET
data/biojava-live-1.7.1/tests/files/1a4w.cif:197: SER ==> SET
data/biojava-live-1.7.1/tests/files/1a4w.cif:209: SER ==> SET
data/biojava-live-1.7.1/tests/files/1a4w.cif:219: SER ==> SET
data/biojava-live-1.7.1/tests/files/1a4w.cif:226: SER ==> SET
data/biojava-live-1.7.1/tests/files/1a4w.cif:236: SER ==> SET
data/biojava-live-1.7.1/tests/files/1a4w.cif:245: SER ==> SET
data/biojava-live-1.7.1/tests/files/1a4w.cif:248: SER ==> SET
data/biojava-live-1.7.1/tests/files/1a4w.cif:281: SER ==> SET
data/biojava-live-1.7.1/tests/files/1a4w.cif:293: SER ==> SET
data/biojava-live-1.7.1/tests/files/1a4w.cif:326: SER ==> SET
data/biojava-live-1.7.1/tests/files/1a4w.cif:342: SER ==> SET
data/biojava-live-1.7.1/tests/files/1a4w.cif:372: SER ==> SET
data/biojava-live-1.7.1/tests/files/1a4w.cif:390: SER ==> SET
data/biojava-live-1.7.1/tests/files/1a4w.cif:419: SER ==> SET
data/biojava-live-1.7.1/tests/files/1a4w.cif:427: SER ==> SET
data/biojava-live-1.7.1/tests/files/1a4w.cif:440: SER ==> SET
data/biojava-live-1.7.1/tests/files/1a4w.cif:609: SER ==> SET
data/biojava-live-1.7.1/tests/files/1a4w.cif:622: ANS ==> AND
data/biojava-live-1.7.1/tests/files/1a4w.cif:881: SER ==> SET
data/biojava-live-1.7.1/tests/files/1a4w.cif:881: SER ==> SET
data/biojava-live-1.7.1/tests/files/1a4w.cif:927: ANS ==> AND
data/biojava-live-1.7.1/tests/files/1a4w.cif:927: ANS ==> AND
data/biojava-live-1.7.1/tests/files/1a4w.cif:952: SER ==> SET
data/biojava-live-1.7.1/tests/files/1a4w.cif:957: SER ==> SET
data/biojava-live-1.7.1/tests/files/1a4w.cif:1037: ANS ==> AND
data/biojava-live-1.7.1/tests/files/1a4w.cif:1059: SER ==> SET
data/biojava-live-1.7.1/tests/files/1a4w.cif:1059: SER ==> SET
data/biojava-live-1.7.1/tests/files/1a4w.cif:1085: ANS ==> AND
data/biojava-live-1.7.1/tests/files/1a4w.cif:1085: ANS ==> AND
data/biojava-live-1.7.1/tests/files/1a4w.cif:1252: SER ==> SET
data/biojava-live-1.7.1/tests/files/1a4w.cif:1252: SER ==> SET
data/biojava-live-1.7.1/tests/files/1a4w.cif:1253: SER ==> SET
data/biojava-live-1.7.1/tests/files/1a4w.cif:1253: SER ==> SET
data/biojava-live-1.7.1/tests/files/1a4w.cif:1254: SER ==> SET
data/biojava-live-1.7.1/tests/files/1a4w.cif:1254: SER ==> SET
data/biojava-live-1.7.1/tests/files/1a4w.cif:1255: SER ==> SET
data/biojava-live-1.7.1/tests/files/1a4w.cif:1255: SER ==> SET
data/biojava-live-1.7.1/tests/files/1a4w.cif:1256: SER ==> SET
data/biojava-live-1.7.1/tests/files/1a4w.cif:1256: SER ==> SET
data/biojava-live-1.7.1/tests/files/1a4w.cif:1257: SER ==> SET
data/biojava-live-1.7.1/tests/files/1a4w.cif:1257: SER ==> SET
data/biojava-live-1.7.1/tests/files/1a4w.cif:1343: SER ==> SET
data/biojava-live-1.7.1/tests/files/1a4w.cif:1343: SER ==> SET
data/biojava-live-1.7.1/tests/files/1a4w.cif:1344: SER ==> SET
data/biojava-live-1.7.1/tests/files/1a4w.cif:1344: SER ==> SET
data/biojava-live-1.7.1/tests/files/1a4w.cif:1345: SER ==> SET
data/biojava-live-1.7.1/tests/files/1a4w.cif:1345: SER ==> SET
data/biojava-live-1.7.1/tests/files/1a4w.cif:1346: SER ==> SET
data/biojava-live-1.7.1/tests/files/1a4w.cif:1346: SER ==> SET
data/biojava-live-1.7.1/tests/files/1a4w.cif:1347: SER ==> SET
data/biojava-live-1.7.1/tests/files/1a4w.cif:1347: SER ==> SET
data/biojava-live-1.7.1/tests/files/1a4w.cif:1348: SER ==> SET
data/biojava-live-1.7.1/tests/files/1a4w.cif:1348: SER ==> SET
data/biojava-live-1.7.1/tests/files/1a4w.cif:1393: SER ==> SET
data/biojava-live-1.7.1/tests/files/1a4w.cif:1393: SER ==> SET
data/biojava-live-1.7.1/tests/files/1a4w.cif:1394: SER ==> SET
data/biojava-live-1.7.1/tests/files/1a4w.cif:1394: SER ==> SET
data/biojava-live-1.7.1/tests/files/1a4w.cif:1395: SER ==> SET
data/biojava-live-1.7.1/tests/files/1a4w.cif:1395: SER ==> SET
data/biojava-live-1.7.1/tests/files/1a4w.cif:1396: SER ==> SET
data/biojava-live-1.7.1/tests/files/1a4w.cif:1396: SER ==> SET
data/biojava-live-1.7.1/tests/files/1a4w.cif:1397: SER ==> SET
data/biojava-live-1.7.1/tests/files/1a4w.cif:1397: SER ==> SET
data/biojava-live-1.7.1/tests/files/1a4w.cif:1398: SER ==> SET
data/biojava-live-1.7.1/tests/files/1a4w.cif:1398: SER ==> SET
data/biojava-live-1.7.1/tests/files/1a4w.cif:1441: SER ==> SET
data/biojava-live-1.7.1/tests/files/1a4w.cif:1441: SER ==> SET
data/biojava-live-1.7.1/tests/files/1a4w.cif:1442: SER ==> SET
data/biojava-live-1.7.1/tests/files/1a4w.cif:1442: SER ==> SET
data/biojava-live-1.7.1/tests/files/1a4w.cif:1443: SER ==> SET
data/biojava-live-1.7.1/tests/files/1a4w.cif:1443: SER ==> SET
data/biojava-live-1.7.1/tests/files/1a4w.cif:1444: SER ==> SET
data/biojava-live-1.7.1/tests/files/1a4w.cif:1444: SER ==> SET
data/biojava-live-1.7.1/tests/files/1a4w.cif:1445: SER ==> SET
data/biojava-live-1.7.1/tests/files/1a4w.cif:1445: SER ==> SET
data/biojava-live-1.7.1/tests/files/1a4w.cif:1446: SER ==> SET
data/biojava-live-1.7.1/tests/files/1a4w.cif:1446: SER ==> SET
data/biojava-live-1.7.1/tests/files/1a4w.cif:1531: SER ==> SET
data/biojava-live-1.7.1/tests/files/1a4w.cif:1531: SER ==> SET
data/biojava-live-1.7.1/tests/files/1a4w.cif:1532: SER ==> SET
data/biojava-live-1.7.1/tests/files/1a4w.cif:1532: SER ==> SET
data/biojava-live-1.7.1/tests/files/1a4w.cif:1533: SER ==> SET
data/biojava-live-1.7.1/tests/files/1a4w.cif:1533: SER ==> SET
data/biojava-live-1.7.1/tests/files/1a4w.cif:1534: SER ==> SET
data/biojava-live-1.7.1/tests/files/1a4w.cif:1534: SER ==> SET
data/biojava-live-1.7.1/tests/files/1a4w.cif:1535: SER ==> SET
data/biojava-live-1.7.1/tests/files/1a4w.cif:1535: SER ==> SET
data/biojava-live-1.7.1/tests/files/1a4w.cif:1536: SER ==> SET
data/biojava-live-1.7.1/tests/files/1a4w.cif:1536: SER ==> SET
data/biojava-live-1.7.1/tests/files/1a4w.cif:1593: SER ==> SET
data/biojava-live-1.7.1/tests/files/1a4w.cif:1593: SER ==> SET
data/biojava-live-1.7.1/tests/files/1a4w.cif:1594: SER ==> SET
data/biojava-live-1.7.1/tests/files/1a4w.cif:1594: SER ==> SET
data/biojava-live-1.7.1/tests/files/1a4w.cif:1595: SER ==> SET
data/biojava-live-1.7.1/tests/files/1a4w.cif:1595: SER ==> SET
data/biojava-live-1.7.1/tests/files/1a4w.cif:1596: SER ==> SET
data/biojava-live-1.7.1/tests/files/1a4w.cif:1596: SER ==> SET
data/biojava-live-1.7.1/tests/files/1a4w.cif:1597: SER ==> SET
data/biojava-live-1.7.1/tests/files/1a4w.cif:1597: SER ==> SET
data/biojava-live-1.7.1/tests/files/1a4w.cif:1598: SER ==> SET
data/biojava-live-1.7.1/tests/files/1a4w.cif:1598: SER ==> SET
data/biojava-live-1.7.1/tests/files/1a4w.cif:1615: SER ==> SET
data/biojava-live-1.7.1/tests/files/1a4w.cif:1615: SER ==> SET
data/biojava-live-1.7.1/tests/files/1a4w.cif:1616: SER ==> SET
data/biojava-live-1.7.1/tests/files/1a4w.cif:1616: SER ==> SET
data/biojava-live-1.7.1/tests/files/1a4w.cif:1617: SER ==> SET
data/biojava-live-1.7.1/tests/files/1a4w.cif:1617: SER ==> SET
data/biojava-live-1.7.1/tests/files/1a4w.cif:1618: SER ==> SET
data/biojava-live-1.7.1/tests/files/1a4w.cif:1618: SER ==> SET
data/biojava-live-1.7.1/tests/files/1a4w.cif:1619: SER ==> SET
data/biojava-live-1.7.1/tests/files/1a4w.cif:1619: SER ==> SET
data/biojava-live-1.7.1/tests/files/1a4w.cif:1620: SER ==> SET
data/biojava-live-1.7.1/tests/files/1a4w.cif:1620: SER ==> SET
data/biojava-live-1.7.1/tests/files/1a4w.cif:1887: SER ==> SET
data/biojava-live-1.7.1/tests/files/1a4w.cif:1887: SER ==> SET
data/biojava-live-1.7.1/tests/files/1a4w.cif:1888: SER ==> SET
data/biojava-live-1.7.1/tests/files/1a4w.cif:1888: SER ==> SET
data/biojava-live-1.7.1/tests/files/1a4w.cif:1889: SER ==> SET
data/biojava-live-1.7.1/tests/files/1a4w.cif:1889: SER ==> SET
data/biojava-live-1.7.1/tests/files/1a4w.cif:1890: SER ==> SET
data/biojava-live-1.7.1/tests/files/1a4w.cif:1890: SER ==> SET
data/biojava-live-1.7.1/tests/files/1a4w.cif:1891: SER ==> SET
data/biojava-live-1.7.1/tests/files/1a4w.cif:1891: SER ==> SET
data/biojava-live-1.7.1/tests/files/1a4w.cif:1892: SER ==> SET
data/biojava-live-1.7.1/tests/files/1a4w.cif:1892: SER ==> SET
data/biojava-live-1.7.1/tests/files/1a4w.cif:1982: SER ==> SET
data/biojava-live-1.7.1/tests/files/1a4w.cif:1982: SER ==> SET
data/biojava-live-1.7.1/tests/files/1a4w.cif:1983: SER ==> SET
data/biojava-live-1.7.1/tests/files/1a4w.cif:1983: SER ==> SET
data/biojava-live-1.7.1/tests/files/1a4w.cif:1984: SER ==> SET
data/biojava-live-1.7.1/tests/files/1a4w.cif:1984: SER ==> SET
data/biojava-live-1.7.1/tests/files/1a4w.cif:1985: SER ==> SET
data/biojava-live-1.7.1/tests/files/1a4w.cif:1985: SER ==> SET
data/biojava-live-1.7.1/tests/files/1a4w.cif:1986: SER ==> SET
data/biojava-live-1.7.1/tests/files/1a4w.cif:1986: SER ==> SET
data/biojava-live-1.7.1/tests/files/1a4w.cif:1987: SER ==> SET
data/biojava-live-1.7.1/tests/files/1a4w.cif:1987: SER ==> SET
data/biojava-live-1.7.1/tests/files/1a4w.cif:2265: SER ==> SET
data/biojava-live-1.7.1/tests/files/1a4w.cif:2265: SER ==> SET
data/biojava-live-1.7.1/tests/files/1a4w.cif:2266: SER ==> SET
data/biojava-live-1.7.1/tests/files/1a4w.cif:2266: SER ==> SET
data/biojava-live-1.7.1/tests/files/1a4w.cif:2267: SER ==> SET
data/biojava-live-1.7.1/tests/files/1a4w.cif:2267: SER ==> SET
data/biojava-live-1.7.1/tests/files/1a4w.cif:2268: SER ==> SET
data/biojava-live-1.7.1/tests/files/1a4w.cif:2268: SER ==> SET
data/biojava-live-1.7.1/tests/files/1a4w.cif:2269: SER ==> SET
data/biojava-live-1.7.1/tests/files/1a4w.cif:2269: SER ==> SET
data/biojava-live-1.7.1/tests/files/1a4w.cif:2270: SER ==> SET
data/biojava-live-1.7.1/tests/files/1a4w.cif:2270: SER ==> SET
data/biojava-live-1.7.1/tests/files/1a4w.cif:2386: SER ==> SET
data/biojava-live-1.7.1/tests/files/1a4w.cif:2386: SER ==> SET
data/biojava-live-1.7.1/tests/files/1a4w.cif:2387: SER ==> SET
data/biojava-live-1.7.1/tests/files/1a4w.cif:2387: SER ==> SET
data/biojava-live-1.7.1/tests/files/1a4w.cif:2388: SER ==> SET
data/biojava-live-1.7.1/tests/files/1a4w.cif:2388: SER ==> SET
data/biojava-live-1.7.1/tests/files/1a4w.cif:2389: SER ==> SET
data/biojava-live-1.7.1/tests/files/1a4w.cif:2389: SER ==> SET
data/biojava-live-1.7.1/tests/files/1a4w.cif:2390: SER ==> SET
data/biojava-live-1.7.1/tests/files/1a4w.cif:2390: SER ==> SET
data/biojava-live-1.7.1/tests/files/1a4w.cif:2391: SER ==> SET
data/biojava-live-1.7.1/tests/files/1a4w.cif:2391: SER ==> SET
data/biojava-live-1.7.1/tests/files/1a4w.cif:2548: SER ==> SET
data/biojava-live-1.7.1/tests/files/1a4w.cif:2548: SER ==> SET
data/biojava-live-1.7.1/tests/files/1a4w.cif:2549: SER ==> SET
data/biojava-live-1.7.1/tests/files/1a4w.cif:2549: SER ==> SET
data/biojava-live-1.7.1/tests/files/1a4w.cif:2550: SER ==> SET
data/biojava-live-1.7.1/tests/files/1a4w.cif:2550: SER ==> SET
data/biojava-live-1.7.1/tests/files/1a4w.cif:2551: SER ==> SET
data/biojava-live-1.7.1/tests/files/1a4w.cif:2551: SER ==> SET
data/biojava-live-1.7.1/tests/files/1a4w.cif:2552: SER ==> SET
data/biojava-live-1.7.1/tests/files/1a4w.cif:2552: SER ==> SET
data/biojava-live-1.7.1/tests/files/1a4w.cif:2553: SER ==> SET
data/biojava-live-1.7.1/tests/files/1a4w.cif:2553: SER ==> SET
data/biojava-live-1.7.1/tests/files/1a4w.cif:2687: SER ==> SET
data/biojava-live-1.7.1/tests/files/1a4w.cif:2687: SER ==> SET
data/biojava-live-1.7.1/tests/files/1a4w.cif:2688: SER ==> SET
data/biojava-live-1.7.1/tests/files/1a4w.cif:2688: SER ==> SET
data/biojava-live-1.7.1/tests/files/1a4w.cif:2689: SER ==> SET
data/biojava-live-1.7.1/tests/files/1a4w.cif:2689: SER ==> SET
data/biojava-live-1.7.1/tests/files/1a4w.cif:2690: SER ==> SET
data/biojava-live-1.7.1/tests/files/1a4w.cif:2690: SER ==> SET
data/biojava-live-1.7.1/tests/files/1a4w.cif:2691: SER ==> SET
data/biojava-live-1.7.1/tests/files/1a4w.cif:2691: SER ==> SET
data/biojava-live-1.7.1/tests/files/1a4w.cif:2692: SER ==> SET
data/biojava-live-1.7.1/tests/files/1a4w.cif:2692: SER ==> SET
data/biojava-live-1.7.1/tests/files/1a4w.cif:2904: SER ==> SET
data/biojava-live-1.7.1/tests/files/1a4w.cif:2904: SER ==> SET
data/biojava-live-1.7.1/tests/files/1a4w.cif:2905: SER ==> SET
data/biojava-live-1.7.1/tests/files/1a4w.cif:2905: SER ==> SET
data/biojava-live-1.7.1/tests/files/1a4w.cif:2906: SER ==> SET
data/biojava-live-1.7.1/tests/files/1a4w.cif:2906: SER ==> SET
data/biojava-live-1.7.1/tests/files/1a4w.cif:2907: SER ==> SET
data/biojava-live-1.7.1/tests/files/1a4w.cif:2907: SER ==> SET
data/biojava-live-1.7.1/tests/files/1a4w.cif:2908: SER ==> SET
data/biojava-live-1.7.1/tests/files/1a4w.cif:2908: SER ==> SET
data/biojava-live-1.7.1/tests/files/1a4w.cif:2909: SER ==> SET
data/biojava-live-1.7.1/tests/files/1a4w.cif:2909: SER ==> SET
data/biojava-live-1.7.1/tests/files/1a4w.cif:2960: SER ==> SET
data/biojava-live-1.7.1/tests/files/1a4w.cif:2960: SER ==> SET
data/biojava-live-1.7.1/tests/files/1a4w.cif:2961: SER ==> SET
data/biojava-live-1.7.1/tests/files/1a4w.cif:2961: SER ==> SET
data/biojava-live-1.7.1/tests/files/1a4w.cif:2962: SER ==> SET
data/biojava-live-1.7.1/tests/files/1a4w.cif:2962: SER ==> SET
data/biojava-live-1.7.1/tests/files/1a4w.cif:2963: SER ==> SET
data/biojava-live-1.7.1/tests/files/1a4w.cif:2963: SER ==> SET
data/biojava-live-1.7.1/tests/files/1a4w.cif:2964: SER ==> SET
data/biojava-live-1.7.1/tests/files/1a4w.cif:2964: SER ==> SET
data/biojava-live-1.7.1/tests/files/1a4w.cif:2965: SER ==> SET
data/biojava-live-1.7.1/tests/files/1a4w.cif:2965: SER ==> SET
data/biojava-live-1.7.1/tests/files/1a4w.cif:3073: SER ==> SET
data/biojava-live-1.7.1/tests/files/1a4w.cif:3073: SER ==> SET
data/biojava-live-1.7.1/tests/files/1a4w.cif:3074: SER ==> SET
data/biojava-live-1.7.1/tests/files/1a4w.cif:3074: SER ==> SET
data/biojava-live-1.7.1/tests/files/1a4w.cif:3075: SER ==> SET
data/biojava-live-1.7.1/tests/files/1a4w.cif:3075: SER ==> SET
data/biojava-live-1.7.1/tests/files/1a4w.cif:3076: SER ==> SET
data/biojava-live-1.7.1/tests/files/1a4w.cif:3076: SER ==> SET
data/biojava-live-1.7.1/tests/files/1a4w.cif:3077: SER ==> SET
data/biojava-live-1.7.1/tests/files/1a4w.cif:3077: SER ==> SET
data/biojava-live-1.7.1/tests/files/1a4w.cif:3078: SER ==> SET
data/biojava-live-1.7.1/tests/files/1a4w.cif:3078: SER ==> SET
data/biojava-live-1.7.1/tests/files/1a4w.cif:3402: ANS ==> AND
data/biojava-live-1.7.1/tests/files/1a4w.cif:3402: ANS ==> AND
data/biojava-live-1.7.1/tests/files/1a4w.cif:3403: ANS ==> AND
data/biojava-live-1.7.1/tests/files/1a4w.cif:3403: ANS ==> AND
data/biojava-live-1.7.1/tests/files/1a4w.cif:3404: ANS ==> AND
data/biojava-live-1.7.1/tests/files/1a4w.cif:3404: ANS ==> AND
data/biojava-live-1.7.1/tests/files/1a4w.cif:3405: ANS ==> AND
data/biojava-live-1.7.1/tests/files/1a4w.cif:3405: ANS ==> AND
data/biojava-live-1.7.1/tests/files/1a4w.cif:3406: ANS ==> AND
data/biojava-live-1.7.1/tests/files/1a4w.cif:3406: ANS ==> AND
data/biojava-live-1.7.1/tests/files/1a4w.cif:3407: ANS ==> AND
data/biojava-live-1.7.1/tests/files/1a4w.cif:3407: ANS ==> AND
data/biojava-live-1.7.1/tests/files/1a4w.cif:3408: ANS ==> AND
data/biojava-live-1.7.1/tests/files/1a4w.cif:3408: ANS ==> AND
data/biojava-live-1.7.1/tests/files/1a4w.cif:3409: ANS ==> AND
data/biojava-live-1.7.1/tests/files/1a4w.cif:3409: ANS ==> AND
data/biojava-live-1.7.1/tests/files/1a4w.cif:3410: ANS ==> AND
data/biojava-live-1.7.1/tests/files/1a4w.cif:3410: ANS ==> AND
data/biojava-live-1.7.1/tests/files/1a4w.cif:3411: ANS ==> AND
data/biojava-live-1.7.1/tests/files/1a4w.cif:3411: ANS ==> AND
data/biojava-live-1.7.1/tests/files/1a4w.cif:3412: ANS ==> AND
data/biojava-live-1.7.1/tests/files/1a4w.cif:3412: ANS ==> AND
data/biojava-live-1.7.1/tests/files/1a4w.cif:3413: ANS ==> AND
data/biojava-live-1.7.1/tests/files/1a4w.cif:3413: ANS ==> AND
data/biojava-live-1.7.1/tests/files/1a4w.cif:3414: ANS ==> AND
data/biojava-live-1.7.1/tests/files/1a4w.cif:3414: ANS ==> AND
data/biojava-live-1.7.1/tests/files/1a4w.cif:3415: ANS ==> AND
data/biojava-live-1.7.1/tests/files/1a4w.cif:3415: ANS ==> AND
data/biojava-live-1.7.1/tests/files/1a4w.cif:3416: ANS ==> AND
data/biojava-live-1.7.1/tests/files/1a4w.cif:3416: ANS ==> AND
data/biojava-live-1.7.1/tests/files/1a4w.cif:3417: ANS ==> AND
data/biojava-live-1.7.1/tests/files/1a4w.cif:3417: ANS ==> AND
data/biojava-live-1.7.1/tests/files/1a4w.cif:3618: SER ==> SET
data/biojava-live-1.7.1/tests/files/1a4w.cif:3633: SER ==> SET
data/biojava-live-1.7.1/tests/files/1a4w.cif:3633: SER ==> SET
data/biojava-live-1.7.1/tests/files/1a4w.cif:3633: SER ==> SET
data/biojava-live-1.7.1/tests/files/1a4w.cif:3645: SER ==> SET
data/biojava-live-1.7.1/tests/files/1a4w.cif:3645: SER ==> SET
data/biojava-live-1.7.1/tests/files/1a4w.cif:3645: SER ==> SET
data/biojava-live-1.7.1/tests/files/1a4w.cif:3655: SER ==> SET
data/biojava-live-1.7.1/tests/files/1a4w.cif:3655: SER ==> SET
data/biojava-live-1.7.1/tests/files/1a4w.cif:3655: SER ==> SET
data/biojava-live-1.7.1/tests/files/1a4w.cif:3662: SER ==> SET
data/biojava-live-1.7.1/tests/files/1a4w.cif:3662: SER ==> SET
data/biojava-live-1.7.1/tests/files/1a4w.cif:3662: SER ==> SET
data/biojava-live-1.7.1/tests/files/1a4w.cif:3672: SER ==> SET
data/biojava-live-1.7.1/tests/files/1a4w.cif:3672: SER ==> SET
data/biojava-live-1.7.1/tests/files/1a4w.cif:3672: SER ==> SET
data/biojava-live-1.7.1/tests/files/1a4w.cif:3681: SER ==> SET
data/biojava-live-1.7.1/tests/files/1a4w.cif:3681: SER ==> SET
data/biojava-live-1.7.1/tests/files/1a4w.cif:3681: SER ==> SET
data/biojava-live-1.7.1/tests/files/1a4w.cif:3684: SER ==> SET
data/biojava-live-1.7.1/tests/files/1a4w.cif:3684: SER ==> SET
data/biojava-live-1.7.1/tests/files/1a4w.cif:3684: SER ==> SET
data/biojava-live-1.7.1/tests/files/1a4w.cif:3717: SER ==> SET
data/biojava-live-1.7.1/tests/files/1a4w.cif:3717: SER ==> SET
data/biojava-live-1.7.1/tests/files/1a4w.cif:3717: SER ==> SET
data/biojava-live-1.7.1/tests/files/1a4w.cif:3729: SER ==> SET
data/biojava-live-1.7.1/tests/files/1a4w.cif:3729: SER ==> SET
data/biojava-live-1.7.1/tests/files/1a4w.cif:3729: SER ==> SET
data/biojava-live-1.7.1/tests/files/1a4w.cif:3762: SER ==> SET
data/biojava-live-1.7.1/tests/files/1a4w.cif:3762: SER ==> SET
data/biojava-live-1.7.1/tests/files/1a4w.cif:3762: SER ==> SET
data/biojava-live-1.7.1/tests/files/1a4w.cif:3778: SER ==> SET
data/biojava-live-1.7.1/tests/files/1a4w.cif:3778: SER ==> SET
data/biojava-live-1.7.1/tests/files/1a4w.cif:3778: SER ==> SET
data/biojava-live-1.7.1/tests/files/1a4w.cif:3808: SER ==> SET
data/biojava-live-1.7.1/tests/files/1a4w.cif:3808: SER ==> SET
data/biojava-live-1.7.1/tests/files/1a4w.cif:3808: SER ==> SET
data/biojava-live-1.7.1/tests/files/1a4w.cif:3826: SER ==> SET
data/biojava-live-1.7.1/tests/files/1a4w.cif:3826: SER ==> SET
data/biojava-live-1.7.1/tests/files/1a4w.cif:3826: SER ==> SET
data/biojava-live-1.7.1/tests/files/1a4w.cif:3855: SER ==> SET
data/biojava-live-1.7.1/tests/files/1a4w.cif:3855: SER ==> SET
data/biojava-live-1.7.1/tests/files/1a4w.cif:3855: SER ==> SET
data/biojava-live-1.7.1/tests/files/1a4w.cif:3863: SER ==> SET
data/biojava-live-1.7.1/tests/files/1a4w.cif:3863: SER ==> SET
data/biojava-live-1.7.1/tests/files/1a4w.cif:3863: SER ==> SET
data/biojava-live-1.7.1/tests/files/1a4w.cif:3876: SER ==> SET
data/biojava-live-1.7.1/tests/files/1a4w.cif:3876: SER ==> SET
data/biojava-live-1.7.1/tests/files/1a4w.cif:3876: SER ==> SET
data/biojava-live-1.7.1/tests/files/1a4w.cif:3954: SER ==> SET
data/biojava-live-1.7.1/tests/files/1a4w.cif:4113: ANS ==> AND
data/biojava-live-1.7.1/tests/files/1a4w.cif:4113: ANS ==> AND
data/biojava-live-1.7.1/tests/files/1a4w.cif:4113: ANS ==> AND
data/biojava-live-1.7.1/tests/files/1a4w.cif:4326: SER ==> SET
data/biojava-live-1.7.1/tests/files/1a4w.cif:4326: SER ==> SET
data/biojava-live-1.7.1/tests/files/1a4w.cif:4326: SER ==> SET
data/biojava-live-1.7.1/tests/files/1a4w.cif:4342: SER ==> SET
data/biojava-live-1.7.1/tests/files/1a4w.cif:4342: SER ==> SET
data/biojava-live-1.7.1/tests/files/1a4w.cif:4342: SER ==> SET
data/biojava-live-1.7.1/tests/files/1a4w.cif:4379: SER ==> SET
data/biojava-live-1.7.1/tests/files/1a4w.cif:4387: SER ==> SET
data/biojava-live-1.7.1/tests/files/1a4w.cif:4397: SER ==> SET
data/biojava-live-1.7.1/tests/files/1a4w.cif:4402: SER ==> SET
data/biojava-live-1.7.1/tests/files/1a4w.cif:4426: ANS ==> AND
data/biojava-live-1.7.1/tests/files/NC_004432.gb:5165: holliday ==> holiday
data/biojava-live-1.7.1/tests/files/NC_004432.gb:5182: holliday ==> holiday
data/biojava-live-1.7.1/tests/files/NC_004432.gb:11362: formate ==> format
data/biojava-live-1.7.1/tests/files/NC_004432.gb:17790: hisT ==> heist, his
data/biojava-live-1.7.1/tests/files/2kc9.pdb:69: AVANCE ==> ADVANCE
data/biojava-live-1.7.1/tests/files/2kc9.pdb:70: VARIAN ==> VARIANT
data/biojava-live-1.7.1/tests/files/2kc9.pdb:101: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:118: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:120: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:121: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:125: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:129: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:130: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:132: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:135: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:137: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:140: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:141: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:142: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:143: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:146: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:148: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:149: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:152: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:153: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:155: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:157: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:160: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:163: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:167: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:170: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:174: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:178: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:179: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:180: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:184: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:188: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:190: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:191: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:196: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:198: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:230: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:234: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:235: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:236: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:238: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:238: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:240: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:240: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:240: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:244: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:589: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:590: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:591: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:592: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:593: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:594: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:595: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:596: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:597: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:598: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:599: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:871: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:872: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:873: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:874: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:875: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:876: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:877: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:878: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:879: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:880: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:881: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:1231: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:1232: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:1233: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:1234: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:1235: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:1236: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:1237: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:1238: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:1239: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:1240: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:1241: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:1242: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:1243: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:1244: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:1245: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:1246: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:1247: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:1248: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:1249: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:1250: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:1251: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:1252: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:1565: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:1566: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:1567: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:1568: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:1569: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:1570: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:1571: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:1572: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:1573: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:1574: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:1575: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:1656: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:1657: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:1658: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:1659: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:1660: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:1661: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:1662: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:1663: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:1664: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:1665: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:1666: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:1719: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:1720: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:1721: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:1722: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:1723: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:1724: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:1725: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:1726: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:1727: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:1728: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:1729: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:2191: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:2192: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:2193: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:2194: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:2195: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:2196: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:2197: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:2198: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:2199: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:2200: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:2201: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:2473: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:2474: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:2475: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:2476: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:2477: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:2478: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:2479: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:2480: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:2481: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:2482: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:2483: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:2833: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:2834: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:2835: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:2836: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:2837: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:2838: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:2839: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:2840: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:2841: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:2842: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:2843: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:2844: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:2845: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:2846: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:2847: SER ==> SET
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data/biojava-live-1.7.1/tests/files/2kc9.pdb:2852: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:2853: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:2854: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:3167: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:3168: SER ==> SET
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data/biojava-live-1.7.1/tests/files/2kc9.pdb:3170: SER ==> SET
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data/biojava-live-1.7.1/tests/files/2kc9.pdb:3173: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:3174: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:3175: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:3176: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:3177: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:3258: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:3259: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:3260: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:3261: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:3262: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:3263: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:3264: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:3265: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:3266: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:3267: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:3268: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:3321: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:3322: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:3323: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:3324: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:3325: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:3326: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:3327: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:3328: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:3329: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:3330: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:3331: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:3793: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:3794: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:3795: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:3796: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:3797: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:3798: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:3799: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:3800: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:3801: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:3802: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:3803: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:4075: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:4076: SER ==> SET
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data/biojava-live-1.7.1/tests/files/2kc9.pdb:4078: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:4079: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:4080: SER ==> SET
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data/biojava-live-1.7.1/tests/files/2kc9.pdb:4084: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:4085: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:4435: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:4436: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:4437: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:4438: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:4439: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:4440: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:4441: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:4442: SER ==> SET
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data/biojava-live-1.7.1/tests/files/2kc9.pdb:4444: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:4445: SER ==> SET
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data/biojava-live-1.7.1/tests/files/2kc9.pdb:4449: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:4450: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:4451: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:4452: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:4453: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:4454: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:4455: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:4456: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:4769: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:4770: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:4771: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:4772: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:4773: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:4774: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:4775: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:4776: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:4777: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:4778: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:4779: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:4860: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:4861: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:4862: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:4863: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:4864: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:4865: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:4866: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:4867: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:4868: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:4869: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:4870: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:4923: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:4924: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:4925: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:4926: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:4927: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:4928: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:4929: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:4930: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:4931: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:4932: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:4933: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:5395: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:5396: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:5397: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:5398: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:5399: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:5400: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:5401: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:5402: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:5403: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:5404: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:5405: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:5677: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:5678: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:5679: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:5680: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:5681: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:5682: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:5683: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:5684: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:5685: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:5686: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:5687: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:6037: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:6038: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:6039: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:6040: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:6041: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:6042: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:6043: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:6044: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:6045: SER ==> SET
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data/biojava-live-1.7.1/tests/files/2kc9.pdb:6049: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:6050: SER ==> SET
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data/biojava-live-1.7.1/tests/files/2kc9.pdb:6058: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:6371: SER ==> SET
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data/biojava-live-1.7.1/tests/files/2kc9.pdb:9676: SER ==> SET
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data/biojava-live-1.7.1/tests/files/2kc9.pdb:9732: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:9733: SER ==> SET
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data/biojava-live-1.7.1/tests/files/2kc9.pdb:10201: SER ==> SET
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data/biojava-live-1.7.1/tests/files/2kc9.pdb:10210: SER ==> SET
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data/biojava-live-1.7.1/tests/files/2kc9.pdb:11182: SER ==> SET
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data/biojava-live-1.7.1/tests/files/2kc9.pdb:11184: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:11185: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:11186: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:11187: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:11268: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:11269: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:11270: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:11271: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:11272: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:11273: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:11274: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:11275: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:11276: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:11277: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:11278: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:11331: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:11332: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:11333: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:11334: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:11335: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:11336: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:11337: SER ==> SET
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data/biojava-live-1.7.1/tests/files/2kc9.pdb:11339: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:11340: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:11341: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:11803: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:11804: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:11805: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:11806: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:11807: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:11808: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:11809: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:11810: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:11811: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:11812: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:11813: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:12085: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:12086: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:12087: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:12088: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:12089: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:12090: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:12091: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:12092: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:12093: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:12094: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:12095: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:12445: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:12446: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:12447: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:12448: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:12449: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:12450: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:12451: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:12452: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:12453: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:12454: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:12455: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:12456: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:12457: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:12458: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:12459: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:12460: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:12461: SER ==> SET
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data/biojava-live-1.7.1/tests/files/2kc9.pdb:12463: SER ==> SET
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data/biojava-live-1.7.1/tests/files/2kc9.pdb:12781: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:12782: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:12783: SER ==> SET
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data/biojava-live-1.7.1/tests/files/2kc9.pdb:12871: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:12872: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:12873: SER ==> SET
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data/biojava-live-1.7.1/tests/files/2kc9.pdb:12878: SER ==> SET
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data/biojava-live-1.7.1/tests/files/2kc9.pdb:12933: SER ==> SET
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data/biojava-live-1.7.1/tests/files/2kc9.pdb:13409: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:13410: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:13411: SER ==> SET
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data/biojava-live-1.7.1/tests/files/2kc9.pdb:13413: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:13414: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:13415: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:13687: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:13688: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:13689: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:13690: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:13691: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:13692: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:13693: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:13694: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:13695: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:13696: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:13697: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:14047: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:14048: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:14049: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:14050: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:14051: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:14052: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:14053: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:14054: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:14055: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:14056: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:14057: SER ==> SET
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data/biojava-live-1.7.1/tests/files/2kc9.pdb:14060: SER ==> SET
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data/biojava-live-1.7.1/tests/files/2kc9.pdb:14390: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:14391: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:14472: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:14473: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:14474: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:14475: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:14476: SER ==> SET
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data/biojava-live-1.7.1/tests/files/2kc9.pdb:14478: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:14479: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:14480: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:14481: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:14482: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:14535: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:14536: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:14537: SER ==> SET
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data/biojava-live-1.7.1/tests/files/2kc9.pdb:14542: SER ==> SET
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data/biojava-live-1.7.1/tests/files/2kc9.pdb:14544: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:14545: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:15007: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:15008: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:15009: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:15010: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:15011: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:15012: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:15013: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:15014: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:15015: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:15016: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:15017: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:15289: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:15290: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:15291: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:15292: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:15293: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:15294: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:15295: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:15296: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:15297: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:15298: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:15299: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:15649: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:15650: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:15651: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:15652: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:15653: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:15654: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:15655: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:15656: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:15657: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:15658: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:15659: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:15660: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:15661: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:15662: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:15663: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:15664: SER ==> SET
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data/biojava-live-1.7.1/tests/files/2kc9.pdb:15666: SER ==> SET
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data/biojava-live-1.7.1/tests/files/2kc9.pdb:15983: SER ==> SET
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data/biojava-live-1.7.1/tests/files/2kc9.pdb:15990: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:15991: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:15992: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:15993: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:16074: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:16075: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:16076: SER ==> SET
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data/biojava-live-1.7.1/tests/files/2kc9.pdb:16078: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:16079: SER ==> SET
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data/biojava-live-1.7.1/tests/files/2kc9.pdb:16081: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:16082: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:16083: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:16084: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:16137: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:16138: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:16139: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:16140: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:16141: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:16142: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:16143: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:16144: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:16145: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:16146: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:16147: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:16609: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:16610: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:16611: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:16612: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:16613: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:16614: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:16615: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:16616: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:16617: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:16618: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:16619: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:16891: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:16892: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:16893: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:16894: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:16895: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:16896: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:16897: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:16898: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:16899: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:16900: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:16901: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:17251: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:17252: SER ==> SET
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data/biojava-live-1.7.1/tests/files/2kc9.pdb:17254: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:17255: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:17256: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:17257: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:17258: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:17259: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:17260: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:17261: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:17262: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:17263: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:17264: SER ==> SET
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data/biojava-live-1.7.1/tests/files/2kc9.pdb:17268: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:17269: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:17270: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:17271: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:17272: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:17585: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:17586: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:17587: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:17588: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:17589: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:17590: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:17591: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:17592: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:17593: SER ==> SET
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data/biojava-live-1.7.1/tests/files/2kc9.pdb:17676: SER ==> SET
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data/biojava-live-1.7.1/tests/files/2kc9.pdb:17683: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:17684: SER ==> SET
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data/biojava-live-1.7.1/tests/files/2kc9.pdb:17686: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:17739: SER ==> SET
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data/biojava-live-1.7.1/tests/files/2kc9.pdb:18211: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:18212: SER ==> SET
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data/biojava-live-1.7.1/tests/files/2kc9.pdb:18216: SER ==> SET
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data/biojava-live-1.7.1/tests/files/2kc9.pdb:18502: SER ==> SET
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data/biojava-live-1.7.1/tests/files/2kc9.pdb:18860: SER ==> SET
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data/biojava-live-1.7.1/tests/files/2kc9.pdb:18863: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:18864: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:18865: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:18866: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:18867: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:18868: SER ==> SET
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data/biojava-live-1.7.1/tests/files/2kc9.pdb:18870: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:18871: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:18872: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:18873: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:18874: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:19187: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:19188: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:19189: SER ==> SET
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data/biojava-live-1.7.1/tests/files/2kc9.pdb:19341: SER ==> SET
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data/biojava-live-1.7.1/tests/files/2kc9.pdb:19347: SER ==> SET
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data/biojava-live-1.7.1/tests/files/2kc9.pdb:19351: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:19813: SER ==> SET
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data/biojava-live-1.7.1/tests/files/2kc9.pdb:19820: SER ==> SET
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data/biojava-live-1.7.1/tests/files/2kc9.pdb:19823: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:20095: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:20096: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:20097: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:20098: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:20099: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:20100: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:20101: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:20102: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:20103: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:20104: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:20105: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:20455: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:20456: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:20457: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:20458: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:20459: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:20460: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:20461: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:20462: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:20463: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:20464: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:20465: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:20466: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:20467: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:20468: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:20469: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:20470: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:20471: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:20472: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:20473: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:20474: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:20475: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:20476: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:20789: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:20790: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:20791: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:20792: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:20793: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:20794: SER ==> SET
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data/biojava-live-1.7.1/tests/files/2kc9.pdb:20796: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:20797: SER ==> SET
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data/biojava-live-1.7.1/tests/files/2kc9.pdb:20881: SER ==> SET
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data/biojava-live-1.7.1/tests/files/2kc9.pdb:20887: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:20888: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:20889: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:20890: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:20943: SER ==> SET
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data/biojava-live-1.7.1/tests/files/2kc9.pdb:20951: SER ==> SET
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data/biojava-live-1.7.1/tests/files/2kc9.pdb:20953: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:21415: SER ==> SET
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data/biojava-live-1.7.1/tests/files/2kc9.pdb:21417: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:21418: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:21419: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:21420: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:21421: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:21422: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:21423: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:21424: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:21425: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:21697: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:21698: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:21699: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:21700: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:21701: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:21702: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:21703: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:21704: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:21705: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:21706: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:21707: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:22057: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:22058: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:22059: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:22060: SER ==> SET
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data/biojava-live-1.7.1/tests/files/2kc9.pdb:22063: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:22064: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:22065: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:22066: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:22067: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:22068: SER ==> SET
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data/biojava-live-1.7.1/tests/files/2kc9.pdb:22076: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:22077: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:22078: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:22391: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:22392: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:22393: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:22394: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:22395: SER ==> SET
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data/biojava-live-1.7.1/tests/files/2kc9.pdb:22401: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:22482: SER ==> SET
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data/biojava-live-1.7.1/tests/files/2kc9.pdb:22489: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:22490: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:22491: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:22492: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:22545: SER ==> SET
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data/biojava-live-1.7.1/tests/files/2kc9.pdb:23017: SER ==> SET
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data/biojava-live-1.7.1/tests/files/2kc9.pdb:23020: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:23021: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:23022: SER ==> SET
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data/biojava-live-1.7.1/tests/files/2kc9.pdb:23027: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:23299: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:23300: SER ==> SET
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data/biojava-live-1.7.1/tests/files/2kc9.pdb:23999: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:24000: SER ==> SET
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data/biojava-live-1.7.1/tests/files/2kc9.pdb:25261: SER ==> SET
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data/biojava-live-1.7.1/tests/files/2kc9.pdb:25269: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:25270: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:25271: SER ==> SET
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data/biojava-live-1.7.1/tests/files/2kc9.pdb:25276: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:25277: SER ==> SET
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data/biojava-live-1.7.1/tests/files/2kc9.pdb:25279: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:25280: SER ==> SET
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data/biojava-live-1.7.1/tests/files/2kc9.pdb:25282: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:25595: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:25596: SER ==> SET
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data/biojava-live-1.7.1/tests/files/2kc9.pdb:25686: SER ==> SET
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data/biojava-live-1.7.1/tests/files/2kc9.pdb:26221: SER ==> SET
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data/biojava-live-1.7.1/tests/files/2kc9.pdb:26509: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:26510: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:26511: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:26512: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:26513: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:26863: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:26864: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:26865: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:26866: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:26867: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:26868: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:26869: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:26870: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:26871: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:26872: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:26873: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:26874: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:26875: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:26876: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:26877: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:26878: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:26879: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:26880: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:26881: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:26882: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:26883: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:26884: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:27197: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:27198: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:27199: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:27200: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:27201: SER ==> SET
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data/biojava-live-1.7.1/tests/files/2kc9.pdb:27206: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:27207: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:27288: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:27289: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:27290: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:27291: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:27292: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:27293: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:27294: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:27295: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:27296: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:27297: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:27298: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:27351: SER ==> SET
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data/biojava-live-1.7.1/tests/files/2kc9.pdb:27354: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:27355: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:27356: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:27357: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:27358: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:27359: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:27360: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:27361: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:27823: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:27824: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:27825: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:27826: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:27827: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:27828: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:27829: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:27830: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:27831: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:27832: SER ==> SET
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data/biojava-live-1.7.1/tests/files/2kc9.pdb:28105: SER ==> SET
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data/biojava-live-1.7.1/tests/files/2kc9.pdb:28108: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:28109: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:28110: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:28111: SER ==> SET
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data/biojava-live-1.7.1/tests/files/2kc9.pdb:28113: SER ==> SET
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data/biojava-live-1.7.1/tests/files/2kc9.pdb:28471: SER ==> SET
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data/biojava-live-1.7.1/tests/files/2kc9.pdb:28473: SER ==> SET
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data/biojava-live-1.7.1/tests/files/2kc9.pdb:28804: SER ==> SET
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data/biojava-live-1.7.1/tests/files/2kc9.pdb:28806: SER ==> SET
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data/biojava-live-1.7.1/tests/files/2kc9.pdb:28808: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:28809: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:28890: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:28891: SER ==> SET
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data/biojava-live-1.7.1/tests/files/2kc9.pdb:28895: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:28896: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:28897: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:28898: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:28899: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:28900: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:28953: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:28954: SER ==> SET
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data/biojava-live-1.7.1/tests/files/2kc9.pdb:28958: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:28959: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:28960: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:28961: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:28962: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:28963: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:29425: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:29426: SER ==> SET
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data/biojava-live-1.7.1/tests/files/2kc9.pdb:29707: SER ==> SET
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data/biojava-live-1.7.1/tests/files/2kc9.pdb:29710: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:29711: SER ==> SET
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data/biojava-live-1.7.1/tests/files/2kc9.pdb:29714: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:29715: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:29716: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:29717: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:30067: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:30068: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:30069: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:30070: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:30071: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:30072: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:30073: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:30074: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:30075: SER ==> SET
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data/biojava-live-1.7.1/tests/files/2kc9.pdb:30078: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:30079: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:30080: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:30081: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:30082: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:30083: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:30084: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:30085: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:30086: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:30087: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:30088: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:30401: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:30402: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:30403: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:30404: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:30405: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:30406: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:30407: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:30408: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:30409: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:30410: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:30411: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:30492: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:30493: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:30494: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:30495: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:30496: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:30497: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:30498: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:30499: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:30500: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:30501: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:30502: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:30555: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:30556: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:30557: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:30558: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:30559: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:30560: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:30561: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:30562: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:30563: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:30564: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:30565: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:31027: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:31028: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:31029: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:31030: SER ==> SET
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data/biojava-live-1.7.1/tests/files/2kc9.pdb:31036: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:31037: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:31309: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:31310: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:31311: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:31312: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:31313: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:31314: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:31315: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:31316: SER ==> SET
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data/biojava-live-1.7.1/tests/files/2kc9.pdb:31318: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:31319: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:31669: SER ==> SET
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data/biojava-live-1.7.1/tests/files/2kc9.pdb:31672: SER ==> SET
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data/biojava-live-1.7.1/tests/files/2kc9.pdb:31679: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:31680: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:31681: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:31682: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:31683: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:31684: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:31685: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:31686: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:31687: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:31688: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:31689: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:31690: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:32003: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:32004: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:32005: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:32006: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:32007: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:32008: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:32009: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:32010: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:32011: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:32012: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:32013: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:32094: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:32095: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:32096: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:32097: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:32098: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:32099: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:32100: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:32101: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:32102: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:32103: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:32104: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:32157: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:32158: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:32159: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:32160: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:32161: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:32162: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:32163: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:32164: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:32165: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:32166: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.pdb:32167: SER ==> SET
data/biojava-live-1.7.1/tests/files/P05814.pro:109: hsa ==> has
data/biojava-live-1.7.1/tests/files/P05814.pro:149: EDE ==> EDGE
data/biojava-live-1.7.1/tests/files/AY069118.gb:15: Wan ==> Want
data/biojava-live-1.7.1/tests/files/1j59.pdb:373: SER ==> SET
data/biojava-live-1.7.1/tests/files/1j59.pdb:459: SER ==> SET
data/biojava-live-1.7.1/tests/files/1j59.pdb:459: SER ==> SET
data/biojava-live-1.7.1/tests/files/1j59.pdb:460: SER ==> SET
data/biojava-live-1.7.1/tests/files/1j59.pdb:461: SER ==> SET
data/biojava-live-1.7.1/tests/files/1j59.pdb:462: SER ==> SET
data/biojava-live-1.7.1/tests/files/1j59.pdb:464: SER ==> SET
data/biojava-live-1.7.1/tests/files/1j59.pdb:465: SER ==> SET
data/biojava-live-1.7.1/tests/files/1j59.pdb:466: SER ==> SET
data/biojava-live-1.7.1/tests/files/1j59.pdb:467: SER ==> SET
data/biojava-live-1.7.1/tests/files/1j59.pdb:471: SER ==> SET
data/biojava-live-1.7.1/tests/files/1j59.pdb:473: SER ==> SET
data/biojava-live-1.7.1/tests/files/1j59.pdb:476: SER ==> SET
data/biojava-live-1.7.1/tests/files/1j59.pdb:476: SER ==> SET
data/biojava-live-1.7.1/tests/files/1j59.pdb:477: SER ==> SET
data/biojava-live-1.7.1/tests/files/1j59.pdb:478: SER ==> SET
data/biojava-live-1.7.1/tests/files/1j59.pdb:479: SER ==> SET
data/biojava-live-1.7.1/tests/files/1j59.pdb:481: SER ==> SET
data/biojava-live-1.7.1/tests/files/1j59.pdb:482: SER ==> SET
data/biojava-live-1.7.1/tests/files/1j59.pdb:483: SER ==> SET
data/biojava-live-1.7.1/tests/files/1j59.pdb:484: SER ==> SET
data/biojava-live-1.7.1/tests/files/1j59.pdb:488: SER ==> SET
data/biojava-live-1.7.1/tests/files/1j59.pdb:490: SER ==> SET
data/biojava-live-1.7.1/tests/files/1j59.pdb:504: SER ==> SET
data/biojava-live-1.7.1/tests/files/1j59.pdb:516: SER ==> SET
data/biojava-live-1.7.1/tests/files/1j59.pdb:518: SER ==> SET
data/biojava-live-1.7.1/tests/files/1j59.pdb:521: SER ==> SET
data/biojava-live-1.7.1/tests/files/1j59.pdb:524: SER ==> SET
data/biojava-live-1.7.1/tests/files/1j59.pdb:526: SER ==> SET
data/biojava-live-1.7.1/tests/files/1j59.pdb:527: SER ==> SET
data/biojava-live-1.7.1/tests/files/1j59.pdb:528: SER ==> SET
data/biojava-live-1.7.1/tests/files/1j59.pdb:531: SER ==> SET
data/biojava-live-1.7.1/tests/files/1j59.pdb:532: SER ==> SET
data/biojava-live-1.7.1/tests/files/1j59.pdb:1870: SER ==> SET
data/biojava-live-1.7.1/tests/files/1j59.pdb:1871: SER ==> SET
data/biojava-live-1.7.1/tests/files/1j59.pdb:1872: SER ==> SET
data/biojava-live-1.7.1/tests/files/1j59.pdb:1873: SER ==> SET
data/biojava-live-1.7.1/tests/files/1j59.pdb:1874: SER ==> SET
data/biojava-live-1.7.1/tests/files/1j59.pdb:1875: SER ==> SET
data/biojava-live-1.7.1/tests/files/1j59.pdb:1948: SER ==> SET
data/biojava-live-1.7.1/tests/files/1j59.pdb:1949: SER ==> SET
data/biojava-live-1.7.1/tests/files/1j59.pdb:1950: SER ==> SET
data/biojava-live-1.7.1/tests/files/1j59.pdb:1951: SER ==> SET
data/biojava-live-1.7.1/tests/files/1j59.pdb:1952: SER ==> SET
data/biojava-live-1.7.1/tests/files/1j59.pdb:1953: SER ==> SET
data/biojava-live-1.7.1/tests/files/1j59.pdb:1963: SER ==> SET
data/biojava-live-1.7.1/tests/files/1j59.pdb:1964: SER ==> SET
data/biojava-live-1.7.1/tests/files/1j59.pdb:1965: SER ==> SET
data/biojava-live-1.7.1/tests/files/1j59.pdb:1966: SER ==> SET
data/biojava-live-1.7.1/tests/files/1j59.pdb:1967: SER ==> SET
data/biojava-live-1.7.1/tests/files/1j59.pdb:1968: SER ==> SET
data/biojava-live-1.7.1/tests/files/1j59.pdb:2114: SER ==> SET
data/biojava-live-1.7.1/tests/files/1j59.pdb:2115: SER ==> SET
data/biojava-live-1.7.1/tests/files/1j59.pdb:2116: SER ==> SET
data/biojava-live-1.7.1/tests/files/1j59.pdb:2117: SER ==> SET
data/biojava-live-1.7.1/tests/files/1j59.pdb:2118: SER ==> SET
data/biojava-live-1.7.1/tests/files/1j59.pdb:2119: SER ==> SET
data/biojava-live-1.7.1/tests/files/1j59.pdb:2236: SER ==> SET
data/biojava-live-1.7.1/tests/files/1j59.pdb:2237: SER ==> SET
data/biojava-live-1.7.1/tests/files/1j59.pdb:2238: SER ==> SET
data/biojava-live-1.7.1/tests/files/1j59.pdb:2239: SER ==> SET
data/biojava-live-1.7.1/tests/files/1j59.pdb:2240: SER ==> SET
data/biojava-live-1.7.1/tests/files/1j59.pdb:2241: SER ==> SET
data/biojava-live-1.7.1/tests/files/1j59.pdb:2405: SER ==> SET
data/biojava-live-1.7.1/tests/files/1j59.pdb:2406: SER ==> SET
data/biojava-live-1.7.1/tests/files/1j59.pdb:2407: SER ==> SET
data/biojava-live-1.7.1/tests/files/1j59.pdb:2408: SER ==> SET
data/biojava-live-1.7.1/tests/files/1j59.pdb:2409: SER ==> SET
data/biojava-live-1.7.1/tests/files/1j59.pdb:2410: SER ==> SET
data/biojava-live-1.7.1/tests/files/1j59.pdb:2518: SER ==> SET
data/biojava-live-1.7.1/tests/files/1j59.pdb:2519: SER ==> SET
data/biojava-live-1.7.1/tests/files/1j59.pdb:2520: SER ==> SET
data/biojava-live-1.7.1/tests/files/1j59.pdb:2521: SER ==> SET
data/biojava-live-1.7.1/tests/files/1j59.pdb:2522: SER ==> SET
data/biojava-live-1.7.1/tests/files/1j59.pdb:2523: SER ==> SET
data/biojava-live-1.7.1/tests/files/1j59.pdb:2683: SER ==> SET
data/biojava-live-1.7.1/tests/files/1j59.pdb:2684: SER ==> SET
data/biojava-live-1.7.1/tests/files/1j59.pdb:2685: SER ==> SET
data/biojava-live-1.7.1/tests/files/1j59.pdb:2686: SER ==> SET
data/biojava-live-1.7.1/tests/files/1j59.pdb:2687: SER ==> SET
data/biojava-live-1.7.1/tests/files/1j59.pdb:2688: SER ==> SET
data/biojava-live-1.7.1/tests/files/1j59.pdb:2769: SER ==> SET
data/biojava-live-1.7.1/tests/files/1j59.pdb:2770: SER ==> SET
data/biojava-live-1.7.1/tests/files/1j59.pdb:2771: SER ==> SET
data/biojava-live-1.7.1/tests/files/1j59.pdb:2772: SER ==> SET
data/biojava-live-1.7.1/tests/files/1j59.pdb:2773: SER ==> SET
data/biojava-live-1.7.1/tests/files/1j59.pdb:2774: SER ==> SET
data/biojava-live-1.7.1/tests/files/1j59.pdb:3153: SER ==> SET
data/biojava-live-1.7.1/tests/files/1j59.pdb:3154: SER ==> SET
data/biojava-live-1.7.1/tests/files/1j59.pdb:3155: SER ==> SET
data/biojava-live-1.7.1/tests/files/1j59.pdb:3156: SER ==> SET
data/biojava-live-1.7.1/tests/files/1j59.pdb:3157: SER ==> SET
data/biojava-live-1.7.1/tests/files/1j59.pdb:3158: SER ==> SET
data/biojava-live-1.7.1/tests/files/1j59.pdb:3299: SER ==> SET
data/biojava-live-1.7.1/tests/files/1j59.pdb:3300: SER ==> SET
data/biojava-live-1.7.1/tests/files/1j59.pdb:3301: SER ==> SET
data/biojava-live-1.7.1/tests/files/1j59.pdb:3302: SER ==> SET
data/biojava-live-1.7.1/tests/files/1j59.pdb:3303: SER ==> SET
data/biojava-live-1.7.1/tests/files/1j59.pdb:3304: SER ==> SET
data/biojava-live-1.7.1/tests/files/1j59.pdb:3443: SER ==> SET
data/biojava-live-1.7.1/tests/files/1j59.pdb:3444: SER ==> SET
data/biojava-live-1.7.1/tests/files/1j59.pdb:3445: SER ==> SET
data/biojava-live-1.7.1/tests/files/1j59.pdb:3446: SER ==> SET
data/biojava-live-1.7.1/tests/files/1j59.pdb:3447: SER ==> SET
data/biojava-live-1.7.1/tests/files/1j59.pdb:3448: SER ==> SET
data/biojava-live-1.7.1/tests/files/1j59.pdb:3521: SER ==> SET
data/biojava-live-1.7.1/tests/files/1j59.pdb:3522: SER ==> SET
data/biojava-live-1.7.1/tests/files/1j59.pdb:3523: SER ==> SET
data/biojava-live-1.7.1/tests/files/1j59.pdb:3524: SER ==> SET
data/biojava-live-1.7.1/tests/files/1j59.pdb:3525: SER ==> SET
data/biojava-live-1.7.1/tests/files/1j59.pdb:3526: SER ==> SET
data/biojava-live-1.7.1/tests/files/1j59.pdb:3536: SER ==> SET
data/biojava-live-1.7.1/tests/files/1j59.pdb:3537: SER ==> SET
data/biojava-live-1.7.1/tests/files/1j59.pdb:3538: SER ==> SET
data/biojava-live-1.7.1/tests/files/1j59.pdb:3539: SER ==> SET
data/biojava-live-1.7.1/tests/files/1j59.pdb:3540: SER ==> SET
data/biojava-live-1.7.1/tests/files/1j59.pdb:3541: SER ==> SET
data/biojava-live-1.7.1/tests/files/1j59.pdb:3687: SER ==> SET
data/biojava-live-1.7.1/tests/files/1j59.pdb:3688: SER ==> SET
data/biojava-live-1.7.1/tests/files/1j59.pdb:3689: SER ==> SET
data/biojava-live-1.7.1/tests/files/1j59.pdb:3690: SER ==> SET
data/biojava-live-1.7.1/tests/files/1j59.pdb:3691: SER ==> SET
data/biojava-live-1.7.1/tests/files/1j59.pdb:3692: SER ==> SET
data/biojava-live-1.7.1/tests/files/1j59.pdb:3809: SER ==> SET
data/biojava-live-1.7.1/tests/files/1j59.pdb:3810: SER ==> SET
data/biojava-live-1.7.1/tests/files/1j59.pdb:3811: SER ==> SET
data/biojava-live-1.7.1/tests/files/1j59.pdb:3812: SER ==> SET
data/biojava-live-1.7.1/tests/files/1j59.pdb:3813: SER ==> SET
data/biojava-live-1.7.1/tests/files/1j59.pdb:3814: SER ==> SET
data/biojava-live-1.7.1/tests/files/1j59.pdb:3978: SER ==> SET
data/biojava-live-1.7.1/tests/files/1j59.pdb:3979: SER ==> SET
data/biojava-live-1.7.1/tests/files/1j59.pdb:3980: SER ==> SET
data/biojava-live-1.7.1/tests/files/1j59.pdb:3981: SER ==> SET
data/biojava-live-1.7.1/tests/files/1j59.pdb:3982: SER ==> SET
data/biojava-live-1.7.1/tests/files/1j59.pdb:3983: SER ==> SET
data/biojava-live-1.7.1/tests/files/1j59.pdb:4091: SER ==> SET
data/biojava-live-1.7.1/tests/files/1j59.pdb:4092: SER ==> SET
data/biojava-live-1.7.1/tests/files/1j59.pdb:4093: SER ==> SET
data/biojava-live-1.7.1/tests/files/1j59.pdb:4094: SER ==> SET
data/biojava-live-1.7.1/tests/files/1j59.pdb:4095: SER ==> SET
data/biojava-live-1.7.1/tests/files/1j59.pdb:4096: SER ==> SET
data/biojava-live-1.7.1/tests/files/1j59.pdb:4256: SER ==> SET
data/biojava-live-1.7.1/tests/files/1j59.pdb:4257: SER ==> SET
data/biojava-live-1.7.1/tests/files/1j59.pdb:4258: SER ==> SET
data/biojava-live-1.7.1/tests/files/1j59.pdb:4259: SER ==> SET
data/biojava-live-1.7.1/tests/files/1j59.pdb:4260: SER ==> SET
data/biojava-live-1.7.1/tests/files/1j59.pdb:4261: SER ==> SET
data/biojava-live-1.7.1/tests/files/1j59.pdb:4342: SER ==> SET
data/biojava-live-1.7.1/tests/files/1j59.pdb:4343: SER ==> SET
data/biojava-live-1.7.1/tests/files/1j59.pdb:4344: SER ==> SET
data/biojava-live-1.7.1/tests/files/1j59.pdb:4345: SER ==> SET
data/biojava-live-1.7.1/tests/files/1j59.pdb:4346: SER ==> SET
data/biojava-live-1.7.1/tests/files/1j59.pdb:4347: SER ==> SET
data/biojava-live-1.7.1/tests/files/1j59.pdb:4726: SER ==> SET
data/biojava-live-1.7.1/tests/files/1j59.pdb:4727: SER ==> SET
data/biojava-live-1.7.1/tests/files/1j59.pdb:4728: SER ==> SET
data/biojava-live-1.7.1/tests/files/1j59.pdb:4729: SER ==> SET
data/biojava-live-1.7.1/tests/files/1j59.pdb:4730: SER ==> SET
data/biojava-live-1.7.1/tests/files/1j59.pdb:4731: SER ==> SET
data/biojava-live-1.7.1/tests/files/1j59.pdb:4872: SER ==> SET
data/biojava-live-1.7.1/tests/files/1j59.pdb:4873: SER ==> SET
data/biojava-live-1.7.1/tests/files/1j59.pdb:4874: SER ==> SET
data/biojava-live-1.7.1/tests/files/1j59.pdb:4875: SER ==> SET
data/biojava-live-1.7.1/tests/files/1j59.pdb:4876: SER ==> SET
data/biojava-live-1.7.1/tests/files/1j59.pdb:4877: SER ==> SET
data/biojava-live-1.7.1/tests/files/1j59.pdb:5264: CONECT ==> CONNECT
data/biojava-live-1.7.1/tests/files/1j59.pdb:5265: CONECT ==> CONNECT
data/biojava-live-1.7.1/tests/files/1j59.pdb:5266: CONECT ==> CONNECT
data/biojava-live-1.7.1/tests/files/1j59.pdb:5267: CONECT ==> CONNECT
data/biojava-live-1.7.1/tests/files/1j59.pdb:5268: CONECT ==> CONNECT
data/biojava-live-1.7.1/tests/files/1j59.pdb:5269: CONECT ==> CONNECT
data/biojava-live-1.7.1/tests/files/1j59.pdb:5270: CONECT ==> CONNECT
data/biojava-live-1.7.1/tests/files/1j59.pdb:5271: CONECT ==> CONNECT
data/biojava-live-1.7.1/tests/files/1j59.pdb:5272: CONECT ==> CONNECT
data/biojava-live-1.7.1/tests/files/1j59.pdb:5273: CONECT ==> CONNECT
data/biojava-live-1.7.1/tests/files/1j59.pdb:5274: CONECT ==> CONNECT
data/biojava-live-1.7.1/tests/files/1j59.pdb:5275: CONECT ==> CONNECT
data/biojava-live-1.7.1/tests/files/1j59.pdb:5276: CONECT ==> CONNECT
data/biojava-live-1.7.1/tests/files/1j59.pdb:5277: CONECT ==> CONNECT
data/biojava-live-1.7.1/tests/files/1j59.pdb:5278: CONECT ==> CONNECT
data/biojava-live-1.7.1/tests/files/1j59.pdb:5279: CONECT ==> CONNECT
data/biojava-live-1.7.1/tests/files/1j59.pdb:5280: CONECT ==> CONNECT
data/biojava-live-1.7.1/tests/files/1j59.pdb:5281: CONECT ==> CONNECT
data/biojava-live-1.7.1/tests/files/1j59.pdb:5282: CONECT ==> CONNECT
data/biojava-live-1.7.1/tests/files/1j59.pdb:5283: CONECT ==> CONNECT
data/biojava-live-1.7.1/tests/files/1j59.pdb:5284: CONECT ==> CONNECT
data/biojava-live-1.7.1/tests/files/1j59.pdb:5285: CONECT ==> CONNECT
data/biojava-live-1.7.1/tests/files/1j59.pdb:5286: CONECT ==> CONNECT
data/biojava-live-1.7.1/tests/files/1j59.pdb:5287: CONECT ==> CONNECT
data/biojava-live-1.7.1/tests/files/1j59.pdb:5288: CONECT ==> CONNECT
data/biojava-live-1.7.1/tests/files/1j59.pdb:5289: CONECT ==> CONNECT
data/biojava-live-1.7.1/tests/files/1j59.pdb:5290: CONECT ==> CONNECT
data/biojava-live-1.7.1/tests/files/1j59.pdb:5291: CONECT ==> CONNECT
data/biojava-live-1.7.1/tests/files/1j59.pdb:5292: CONECT ==> CONNECT
data/biojava-live-1.7.1/tests/files/1j59.pdb:5293: CONECT ==> CONNECT
data/biojava-live-1.7.1/tests/files/1j59.pdb:5294: CONECT ==> CONNECT
data/biojava-live-1.7.1/tests/files/1j59.pdb:5295: CONECT ==> CONNECT
data/biojava-live-1.7.1/tests/files/1j59.pdb:5296: CONECT ==> CONNECT
data/biojava-live-1.7.1/tests/files/1j59.pdb:5297: CONECT ==> CONNECT
data/biojava-live-1.7.1/tests/files/1j59.pdb:5298: CONECT ==> CONNECT
data/biojava-live-1.7.1/tests/files/1j59.pdb:5299: CONECT ==> CONNECT
data/biojava-live-1.7.1/tests/files/1j59.pdb:5300: CONECT ==> CONNECT
data/biojava-live-1.7.1/tests/files/1j59.pdb:5301: CONECT ==> CONNECT
data/biojava-live-1.7.1/tests/files/1j59.pdb:5302: CONECT ==> CONNECT
data/biojava-live-1.7.1/tests/files/1j59.pdb:5303: CONECT ==> CONNECT
data/biojava-live-1.7.1/tests/files/1j59.pdb:5304: CONECT ==> CONNECT
data/biojava-live-1.7.1/tests/files/1j59.pdb:5305: CONECT ==> CONNECT
data/biojava-live-1.7.1/tests/files/2pos.pdb:359: SER ==> SET
data/biojava-live-1.7.1/tests/files/2pos.pdb:359: SER ==> SET
data/biojava-live-1.7.1/tests/files/2pos.pdb:360: SER ==> SET
data/biojava-live-1.7.1/tests/files/2pos.pdb:365: SER ==> SET
data/biojava-live-1.7.1/tests/files/2pos.pdb:367: SER ==> SET
data/biojava-live-1.7.1/tests/files/2pos.pdb:367: SER ==> SET
data/biojava-live-1.7.1/tests/files/2pos.pdb:368: SER ==> SET
data/biojava-live-1.7.1/tests/files/2pos.pdb:373: SER ==> SET
data/biojava-live-1.7.1/tests/files/2pos.pdb:375: SER ==> SET
data/biojava-live-1.7.1/tests/files/2pos.pdb:375: SER ==> SET
data/biojava-live-1.7.1/tests/files/2pos.pdb:376: SER ==> SET
data/biojava-live-1.7.1/tests/files/2pos.pdb:381: SER ==> SET
data/biojava-live-1.7.1/tests/files/2pos.pdb:383: SER ==> SET
data/biojava-live-1.7.1/tests/files/2pos.pdb:383: SER ==> SET
data/biojava-live-1.7.1/tests/files/2pos.pdb:384: SER ==> SET
data/biojava-live-1.7.1/tests/files/2pos.pdb:389: SER ==> SET
data/biojava-live-1.7.1/tests/files/2pos.pdb:408: SER ==> SET
data/biojava-live-1.7.1/tests/files/2pos.pdb:414: SER ==> SET
data/biojava-live-1.7.1/tests/files/2pos.pdb:420: SER ==> SET
data/biojava-live-1.7.1/tests/files/2pos.pdb:425: SER ==> SET
data/biojava-live-1.7.1/tests/files/2pos.pdb:481: SER ==> SET
data/biojava-live-1.7.1/tests/files/2pos.pdb:485: SER ==> SET
data/biojava-live-1.7.1/tests/files/2pos.pdb:487: SER ==> SET
data/biojava-live-1.7.1/tests/files/2pos.pdb:657: SER ==> SET
data/biojava-live-1.7.1/tests/files/2pos.pdb:658: SER ==> SET
data/biojava-live-1.7.1/tests/files/2pos.pdb:659: SER ==> SET
data/biojava-live-1.7.1/tests/files/2pos.pdb:660: SER ==> SET
data/biojava-live-1.7.1/tests/files/2pos.pdb:661: SER ==> SET
data/biojava-live-1.7.1/tests/files/2pos.pdb:662: SER ==> SET
data/biojava-live-1.7.1/tests/files/2pos.pdb:691: SER ==> SET
data/biojava-live-1.7.1/tests/files/2pos.pdb:692: SER ==> SET
data/biojava-live-1.7.1/tests/files/2pos.pdb:693: SER ==> SET
data/biojava-live-1.7.1/tests/files/2pos.pdb:694: SER ==> SET
data/biojava-live-1.7.1/tests/files/2pos.pdb:695: SER ==> SET
data/biojava-live-1.7.1/tests/files/2pos.pdb:696: SER ==> SET
data/biojava-live-1.7.1/tests/files/2pos.pdb:732: SER ==> SET
data/biojava-live-1.7.1/tests/files/2pos.pdb:733: SER ==> SET
data/biojava-live-1.7.1/tests/files/2pos.pdb:734: SER ==> SET
data/biojava-live-1.7.1/tests/files/2pos.pdb:735: SER ==> SET
data/biojava-live-1.7.1/tests/files/2pos.pdb:736: SER ==> SET
data/biojava-live-1.7.1/tests/files/2pos.pdb:737: SER ==> SET
data/biojava-live-1.7.1/tests/files/2pos.pdb:1202: SER ==> SET
data/biojava-live-1.7.1/tests/files/2pos.pdb:1203: SER ==> SET
data/biojava-live-1.7.1/tests/files/2pos.pdb:1204: SER ==> SET
data/biojava-live-1.7.1/tests/files/2pos.pdb:1205: SER ==> SET
data/biojava-live-1.7.1/tests/files/2pos.pdb:1206: SER ==> SET
data/biojava-live-1.7.1/tests/files/2pos.pdb:1207: SER ==> SET
data/biojava-live-1.7.1/tests/files/2pos.pdb:1386: SER ==> SET
data/biojava-live-1.7.1/tests/files/2pos.pdb:1387: SER ==> SET
data/biojava-live-1.7.1/tests/files/2pos.pdb:1388: SER ==> SET
data/biojava-live-1.7.1/tests/files/2pos.pdb:1389: SER ==> SET
data/biojava-live-1.7.1/tests/files/2pos.pdb:1390: SER ==> SET
data/biojava-live-1.7.1/tests/files/2pos.pdb:1391: SER ==> SET
data/biojava-live-1.7.1/tests/files/2pos.pdb:1420: SER ==> SET
data/biojava-live-1.7.1/tests/files/2pos.pdb:1421: SER ==> SET
data/biojava-live-1.7.1/tests/files/2pos.pdb:1422: SER ==> SET
data/biojava-live-1.7.1/tests/files/2pos.pdb:1423: SER ==> SET
data/biojava-live-1.7.1/tests/files/2pos.pdb:1424: SER ==> SET
data/biojava-live-1.7.1/tests/files/2pos.pdb:1425: SER ==> SET
data/biojava-live-1.7.1/tests/files/2pos.pdb:1461: SER ==> SET
data/biojava-live-1.7.1/tests/files/2pos.pdb:1462: SER ==> SET
data/biojava-live-1.7.1/tests/files/2pos.pdb:1463: SER ==> SET
data/biojava-live-1.7.1/tests/files/2pos.pdb:1464: SER ==> SET
data/biojava-live-1.7.1/tests/files/2pos.pdb:1465: SER ==> SET
data/biojava-live-1.7.1/tests/files/2pos.pdb:1466: SER ==> SET
data/biojava-live-1.7.1/tests/files/2pos.pdb:1931: SER ==> SET
data/biojava-live-1.7.1/tests/files/2pos.pdb:1932: SER ==> SET
data/biojava-live-1.7.1/tests/files/2pos.pdb:1933: SER ==> SET
data/biojava-live-1.7.1/tests/files/2pos.pdb:1934: SER ==> SET
data/biojava-live-1.7.1/tests/files/2pos.pdb:1935: SER ==> SET
data/biojava-live-1.7.1/tests/files/2pos.pdb:1936: SER ==> SET
data/biojava-live-1.7.1/tests/files/2pos.pdb:2124: SER ==> SET
data/biojava-live-1.7.1/tests/files/2pos.pdb:2125: SER ==> SET
data/biojava-live-1.7.1/tests/files/2pos.pdb:2126: SER ==> SET
data/biojava-live-1.7.1/tests/files/2pos.pdb:2127: SER ==> SET
data/biojava-live-1.7.1/tests/files/2pos.pdb:2128: SER ==> SET
data/biojava-live-1.7.1/tests/files/2pos.pdb:2129: SER ==> SET
data/biojava-live-1.7.1/tests/files/2pos.pdb:2158: SER ==> SET
data/biojava-live-1.7.1/tests/files/2pos.pdb:2159: SER ==> SET
data/biojava-live-1.7.1/tests/files/2pos.pdb:2160: SER ==> SET
data/biojava-live-1.7.1/tests/files/2pos.pdb:2161: SER ==> SET
data/biojava-live-1.7.1/tests/files/2pos.pdb:2162: SER ==> SET
data/biojava-live-1.7.1/tests/files/2pos.pdb:2163: SER ==> SET
data/biojava-live-1.7.1/tests/files/2pos.pdb:2199: SER ==> SET
data/biojava-live-1.7.1/tests/files/2pos.pdb:2200: SER ==> SET
data/biojava-live-1.7.1/tests/files/2pos.pdb:2201: SER ==> SET
data/biojava-live-1.7.1/tests/files/2pos.pdb:2202: SER ==> SET
data/biojava-live-1.7.1/tests/files/2pos.pdb:2203: SER ==> SET
data/biojava-live-1.7.1/tests/files/2pos.pdb:2204: SER ==> SET
data/biojava-live-1.7.1/tests/files/2pos.pdb:2669: SER ==> SET
data/biojava-live-1.7.1/tests/files/2pos.pdb:2670: SER ==> SET
data/biojava-live-1.7.1/tests/files/2pos.pdb:2671: SER ==> SET
data/biojava-live-1.7.1/tests/files/2pos.pdb:2672: SER ==> SET
data/biojava-live-1.7.1/tests/files/2pos.pdb:2673: SER ==> SET
data/biojava-live-1.7.1/tests/files/2pos.pdb:2674: SER ==> SET
data/biojava-live-1.7.1/tests/files/2pos.pdb:2862: SER ==> SET
data/biojava-live-1.7.1/tests/files/2pos.pdb:2863: SER ==> SET
data/biojava-live-1.7.1/tests/files/2pos.pdb:2864: SER ==> SET
data/biojava-live-1.7.1/tests/files/2pos.pdb:2865: SER ==> SET
data/biojava-live-1.7.1/tests/files/2pos.pdb:2866: SER ==> SET
data/biojava-live-1.7.1/tests/files/2pos.pdb:2867: SER ==> SET
data/biojava-live-1.7.1/tests/files/2pos.pdb:2896: SER ==> SET
data/biojava-live-1.7.1/tests/files/2pos.pdb:2897: SER ==> SET
data/biojava-live-1.7.1/tests/files/2pos.pdb:2898: SER ==> SET
data/biojava-live-1.7.1/tests/files/2pos.pdb:2899: SER ==> SET
data/biojava-live-1.7.1/tests/files/2pos.pdb:2900: SER ==> SET
data/biojava-live-1.7.1/tests/files/2pos.pdb:2901: SER ==> SET
data/biojava-live-1.7.1/tests/files/2pos.pdb:2937: SER ==> SET
data/biojava-live-1.7.1/tests/files/2pos.pdb:2938: SER ==> SET
data/biojava-live-1.7.1/tests/files/2pos.pdb:2939: SER ==> SET
data/biojava-live-1.7.1/tests/files/2pos.pdb:2940: SER ==> SET
data/biojava-live-1.7.1/tests/files/2pos.pdb:2941: SER ==> SET
data/biojava-live-1.7.1/tests/files/2pos.pdb:2942: SER ==> SET
data/biojava-live-1.7.1/tests/files/2pos.pdb:3407: SER ==> SET
data/biojava-live-1.7.1/tests/files/2pos.pdb:3408: SER ==> SET
data/biojava-live-1.7.1/tests/files/2pos.pdb:3409: SER ==> SET
data/biojava-live-1.7.1/tests/files/2pos.pdb:3410: SER ==> SET
data/biojava-live-1.7.1/tests/files/2pos.pdb:3411: SER ==> SET
data/biojava-live-1.7.1/tests/files/2pos.pdb:3412: SER ==> SET
data/biojava-live-1.7.1/tests/files/2pos.pdb:4203: CONECT ==> CONNECT
data/biojava-live-1.7.1/tests/files/2pos.pdb:4204: CONECT ==> CONNECT
data/biojava-live-1.7.1/tests/files/2pos.pdb:4205: CONECT ==> CONNECT
data/biojava-live-1.7.1/tests/files/2pos.pdb:4206: CONECT ==> CONNECT
data/biojava-live-1.7.1/tests/files/2pos.pdb:4207: CONECT ==> CONNECT
data/biojava-live-1.7.1/tests/files/2pos.pdb:4208: CONECT ==> CONNECT
data/biojava-live-1.7.1/tests/files/2pos.pdb:4209: CONECT ==> CONNECT
data/biojava-live-1.7.1/tests/files/2pos.pdb:4210: CONECT ==> CONNECT
data/biojava-live-1.7.1/tests/files/2pos.pdb:4211: CONECT ==> CONNECT
data/biojava-live-1.7.1/tests/files/2pos.pdb:4212: CONECT ==> CONNECT
data/biojava-live-1.7.1/tests/files/2pos.pdb:4213: CONECT ==> CONNECT
data/biojava-live-1.7.1/tests/files/2pos.pdb:4214: CONECT ==> CONNECT
data/biojava-live-1.7.1/tests/files/2pos.pdb:4215: CONECT ==> CONNECT
data/biojava-live-1.7.1/tests/files/2pos.pdb:4216: CONECT ==> CONNECT
data/biojava-live-1.7.1/tests/files/2pos.pdb:4217: CONECT ==> CONNECT
data/biojava-live-1.7.1/tests/files/2pos.pdb:4218: CONECT ==> CONNECT
data/biojava-live-1.7.1/tests/files/2pos.pdb:4219: CONECT ==> CONNECT
data/biojava-live-1.7.1/tests/files/2pos.pdb:4220: CONECT ==> CONNECT
data/biojava-live-1.7.1/tests/files/2pos.pdb:4221: CONECT ==> CONNECT
data/biojava-live-1.7.1/tests/files/2pos.pdb:4222: CONECT ==> CONNECT
data/biojava-live-1.7.1/tests/files/2pos.pdb:4223: CONECT ==> CONNECT
data/biojava-live-1.7.1/tests/files/2pos.pdb:4224: CONECT ==> CONNECT
data/biojava-live-1.7.1/tests/files/2pos.pdb:4225: CONECT ==> CONNECT
data/biojava-live-1.7.1/tests/files/2pos.pdb:4226: CONECT ==> CONNECT
data/biojava-live-1.7.1/tests/files/2pos.pdb:4227: CONECT ==> CONNECT
data/biojava-live-1.7.1/tests/files/2pos.pdb:4228: CONECT ==> CONNECT
data/biojava-live-1.7.1/tests/files/2pos.pdb:4229: CONECT ==> CONNECT
data/biojava-live-1.7.1/tests/files/2pos.pdb:4230: CONECT ==> CONNECT
data/biojava-live-1.7.1/tests/files/2pos.pdb:4231: CONECT ==> CONNECT
data/biojava-live-1.7.1/tests/files/2pos.pdb:4232: CONECT ==> CONNECT
data/biojava-live-1.7.1/tests/files/2pos.pdb:4233: CONECT ==> CONNECT
data/biojava-live-1.7.1/tests/files/2pos.pdb:4234: CONECT ==> CONNECT
data/biojava-live-1.7.1/tests/files/2pos.pdb:4235: CONECT ==> CONNECT
data/biojava-live-1.7.1/tests/files/2pos.pdb:4236: CONECT ==> CONNECT
data/biojava-live-1.7.1/tests/files/2pos.pdb:4237: CONECT ==> CONNECT
data/biojava-live-1.7.1/tests/files/2pos.pdb:4238: CONECT ==> CONNECT
data/biojava-live-1.7.1/tests/files/2pos.pdb:4239: CONECT ==> CONNECT
data/biojava-live-1.7.1/tests/files/2pos.pdb:4240: CONECT ==> CONNECT
data/biojava-live-1.7.1/tests/files/2pos.pdb:4241: CONECT ==> CONNECT
data/biojava-live-1.7.1/tests/files/2pos.pdb:4242: CONECT ==> CONNECT
data/biojava-live-1.7.1/tests/files/2pos.pdb:4243: CONECT ==> CONNECT
data/biojava-live-1.7.1/tests/files/2pos.pdb:4244: CONECT ==> CONNECT
data/biojava-live-1.7.1/tests/files/2pos.pdb:4245: CONECT ==> CONNECT
data/biojava-live-1.7.1/tests/files/2pos.pdb:4246: CONECT ==> CONNECT
data/biojava-live-1.7.1/tests/files/2pos.pdb:4247: CONECT ==> CONNECT
data/biojava-live-1.7.1/tests/files/2pos.pdb:4248: CONECT ==> CONNECT
data/biojava-live-1.7.1/tests/files/2pos.pdb:4249: CONECT ==> CONNECT
data/biojava-live-1.7.1/tests/files/2pos.pdb:4250: CONECT ==> CONNECT
data/biojava-live-1.7.1/tests/files/2pos.pdb:4251: CONECT ==> CONNECT
data/biojava-live-1.7.1/tests/files/2pos.pdb:4252: CONECT ==> CONNECT
data/biojava-live-1.7.1/tests/files/2pos.pdb:4253: CONECT ==> CONNECT
data/biojava-live-1.7.1/tests/files/2pos.pdb:4254: CONECT ==> CONNECT
data/biojava-live-1.7.1/tests/files/2pos.pdb:4255: CONECT ==> CONNECT
data/biojava-live-1.7.1/tests/files/2pos.pdb:4256: CONECT ==> CONNECT
data/biojava-live-1.7.1/tests/files/2pos.pdb:4257: CONECT ==> CONNECT
data/biojava-live-1.7.1/tests/files/2pos.pdb:4258: CONECT ==> CONNECT
data/biojava-live-1.7.1/tests/files/2pos.pdb:4259: CONECT ==> CONNECT
data/biojava-live-1.7.1/tests/files/2pos.pdb:4260: CONECT ==> CONNECT
data/biojava-live-1.7.1/tests/files/2pos.pdb:4261: CONECT ==> CONNECT
data/biojava-live-1.7.1/tests/files/2pos.pdb:4262: CONECT ==> CONNECT
data/biojava-live-1.7.1/tests/files/2pos.pdb:4263: CONECT ==> CONNECT
data/biojava-live-1.7.1/tests/files/2pos.pdb:4264: CONECT ==> CONNECT
data/biojava-live-1.7.1/tests/files/2pos.pdb:4265: CONECT ==> CONNECT
data/biojava-live-1.7.1/tests/files/2pos.pdb:4266: CONECT ==> CONNECT
data/biojava-live-1.7.1/tests/files/2pos.pdb:4267: CONECT ==> CONNECT
data/biojava-live-1.7.1/tests/files/2pos.pdb:4268: CONECT ==> CONNECT
data/biojava-live-1.7.1/tests/files/2pos.pdb:4269: CONECT ==> CONNECT
data/biojava-live-1.7.1/tests/files/2pos.pdb:4270: CONECT ==> CONNECT
data/biojava-live-1.7.1/tests/files/2pos.pdb:4271: CONECT ==> CONNECT
data/biojava-live-1.7.1/tests/files/2pos.pdb:4272: CONECT ==> CONNECT
data/biojava-live-1.7.1/tests/files/2pos.pdb:4273: CONECT ==> CONNECT
data/biojava-live-1.7.1/tests/files/2pos.pdb:4274: CONECT ==> CONNECT
data/biojava-live-1.7.1/tests/files/2pos.pdb:4275: CONECT ==> CONNECT
data/biojava-live-1.7.1/tests/files/2pos.pdb:4276: CONECT ==> CONNECT
data/biojava-live-1.7.1/tests/files/2pos.pdb:4277: CONECT ==> CONNECT
data/biojava-live-1.7.1/tests/files/2kc9.cif:100: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:121: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:137: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:158: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:159: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:178: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:185: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:189: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:282: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:306: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:355: Varian ==> Variant
data/biojava-live-1.7.1/tests/files/2kc9.cif:356: Avance ==> Advance
data/biojava-live-1.7.1/tests/files/2kc9.cif:393: noe ==> not, no, node, know, now
data/biojava-live-1.7.1/tests/files/2kc9.cif:398: Varian ==> Variant
data/biojava-live-1.7.1/tests/files/2kc9.cif:453: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:453: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:905: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:905: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:906: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:906: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:907: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:907: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:908: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:908: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:909: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:909: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:910: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:910: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:911: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:911: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:912: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:912: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:913: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:913: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:914: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:914: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:915: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:915: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:1187: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:1187: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:1188: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:1188: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:1189: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:1189: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:1190: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:1190: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:1191: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:1191: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:1192: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:1192: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:1193: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:1193: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:1194: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:1194: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:1195: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:1195: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:1196: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:1196: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:1197: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:1197: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:1547: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:1547: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:1548: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:1548: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:1549: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:1549: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:1550: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:1550: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:1551: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:1551: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:1552: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:1552: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:1553: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:1553: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:1554: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:1554: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:1555: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:1555: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:1556: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:1556: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:1557: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:1557: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:1558: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:1558: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:1559: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:1559: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:1560: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:1560: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:1561: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:1561: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:1562: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:1562: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:1563: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:1563: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:1564: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:1564: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:1565: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:1565: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:1566: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:1566: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:1567: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:1567: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:1568: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:1568: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:1881: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:1881: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:1882: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:1882: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:1883: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:1883: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:1884: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:1884: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:1885: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:1885: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:1886: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:1886: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:1887: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:1887: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:1888: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:1888: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:1889: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:1889: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:1890: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:1890: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:1891: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:1891: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:1972: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:1972: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:1973: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:1973: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:1974: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:1974: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:1975: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:1975: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:1976: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:1976: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:1977: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:1977: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:1978: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:1978: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:1979: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:1979: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:1980: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:1980: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:1981: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:1981: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:1982: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:1982: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:2035: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:2035: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:2036: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:2036: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:2037: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:2037: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:2038: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:2038: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:2039: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:2039: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:2040: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:2040: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:2041: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:2041: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:2042: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:2042: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:2043: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:2043: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:2044: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:2044: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:2045: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:2045: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:2504: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:2504: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:2505: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:2505: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:2506: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:2506: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:2507: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:2507: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:2508: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:2508: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:2509: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:2509: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:2510: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:2510: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:2511: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:2511: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:2512: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:2512: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:2513: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:2513: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:2514: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:2514: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:2786: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:2786: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:2787: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:2787: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:2788: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:2788: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:2789: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:2789: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:2790: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:2790: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:2791: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:2791: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:2792: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:2792: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:2793: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:2793: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:2794: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:2794: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:2795: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:2795: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:2796: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:2796: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:3146: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:3146: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:3147: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:3147: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:3148: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:3148: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:3149: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:3149: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:3150: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:3150: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:3151: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:3151: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:3152: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:3152: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:3153: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:3153: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:3154: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:3154: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:3155: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:3155: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:3156: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:3156: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:3157: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:3157: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:3158: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:3158: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:3159: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:3159: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:3160: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:3160: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:3161: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:3161: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:3162: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:3162: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:3163: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:3163: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:3164: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:3164: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:3165: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:3165: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:3166: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:3166: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:3167: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:3167: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:3480: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:3480: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:3481: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:3481: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:3482: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:3482: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:3483: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:3483: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:3484: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:3484: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:3485: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:3485: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:3486: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:3486: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:3487: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:3487: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:3488: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:3488: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:3489: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:3489: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:3490: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:3490: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:3571: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:3571: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:3572: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:3572: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:3573: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:3573: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:3574: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:3574: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:3575: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:3575: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:3576: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:3576: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:3577: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:3577: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:3578: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:3578: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:3579: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:3579: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:3580: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:3580: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:3581: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:3581: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:3634: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:3634: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:3635: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:3635: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:3636: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:3636: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:3637: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:3637: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:3638: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:3638: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:3639: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:3639: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:3640: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:3640: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:3641: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:3641: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:3642: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:3642: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:3643: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:3643: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:3644: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:3644: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:4103: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:4103: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:4104: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:4104: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:4105: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:4105: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:4106: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:4106: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:4107: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:4107: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:4108: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:4108: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:4109: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:4109: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:4110: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:4110: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:4111: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:4111: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:4112: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:4112: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:4113: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:4113: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:4385: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:4385: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:4386: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:4386: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:4387: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:4387: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:4388: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:4388: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:4389: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:4389: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:4390: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:4390: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:4391: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:4391: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:4392: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:4392: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:4393: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:4393: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:4394: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:4394: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:4395: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:4395: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:4745: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:4745: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:4746: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:4746: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:4747: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:4747: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:4748: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:4748: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:4749: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:4749: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:4750: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:4750: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:4751: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:4751: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:4752: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:4752: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:4753: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:4753: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:4754: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:4754: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:4755: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:4755: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:4756: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:4756: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:4757: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:4757: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:4758: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:4758: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:4759: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:4759: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:4760: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:4760: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:4761: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:4761: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:4762: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:4762: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:4763: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:4763: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:4764: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:4764: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:4765: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:4765: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:4766: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:4766: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:5079: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:5079: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:5080: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:5080: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:5081: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:5081: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:5082: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:5082: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:5083: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:5083: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:5084: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:5084: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:5085: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:5085: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:5086: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:5086: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:5087: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:5087: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:5088: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:5088: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:5089: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:5089: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:5170: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:5170: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:5171: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:5171: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:5172: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:5172: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:5173: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:5173: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:5174: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:5174: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:5175: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:5175: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:5176: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:5176: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:5177: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:5177: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:5178: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:5178: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:5179: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:5179: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:5180: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:5180: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:5233: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:5233: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:5234: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:5234: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:5235: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:5235: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:5236: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:5236: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:5237: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:5237: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:5238: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:5238: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:5239: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:5239: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:5240: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:5240: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:5241: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:5241: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:5242: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:5242: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:5243: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:5243: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:5702: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:5702: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:5703: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:5703: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:5704: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:5704: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:5705: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:5705: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:5706: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:5706: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:5707: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:5707: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:5708: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:5708: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:5709: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:5709: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:5710: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:5710: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:5711: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:5711: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:5712: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:5712: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:5984: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:5984: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:5985: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:5985: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:5986: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:5986: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:5987: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:5987: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:5988: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:5988: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:5989: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:5989: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:5990: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:5990: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:5991: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:5991: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:5992: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:5992: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:5993: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:5993: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:5994: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:5994: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:6344: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:6344: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:6345: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:6345: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:6346: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:6346: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:6347: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:6347: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:6348: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:6348: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:6349: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:6349: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:6350: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:6350: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:6351: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:6351: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:6352: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:6352: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:6353: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:6353: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:6354: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:6354: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:6355: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:6355: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:6356: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:6356: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:6357: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:6357: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:6358: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:6358: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:6359: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:6359: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:6360: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:6360: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:6361: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:6361: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:6362: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:6362: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:6363: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:6363: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:6364: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:6364: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:6365: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:6365: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:6678: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:6678: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:6679: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:6679: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:6680: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:6680: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:6681: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:6681: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:6682: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:6682: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:6683: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:6683: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:6684: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:6684: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:6685: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:6685: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:6686: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:6686: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:6687: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:6687: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:6688: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:6688: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:6769: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:6769: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:6770: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:6770: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:6771: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:6771: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:6772: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:6772: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:6773: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:6773: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:6774: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:6774: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:6775: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:6775: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:6776: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:6776: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:6777: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:6777: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:6778: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:6778: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:6779: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:6779: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:6832: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:6832: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:6833: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:6833: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:6834: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:6834: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:6835: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:6835: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:6836: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:6836: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:6837: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:6837: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:6838: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:6838: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:6839: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:6839: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:6840: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:6840: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:6841: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:6841: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:6842: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:6842: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:7301: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:7301: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:7302: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:7302: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:7303: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:7303: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:7304: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:7304: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:7305: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:7305: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:7306: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:7306: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:7307: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:7307: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:7308: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:7308: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:7309: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:7309: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:7310: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:7310: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:7311: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:7311: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:7583: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:7583: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:7584: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:7584: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:7585: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:7585: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:7586: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:7586: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:7587: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:7587: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:7588: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:7588: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:7589: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:7589: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:7590: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:7590: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:7591: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:7591: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:7592: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:7592: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:7593: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:7593: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:7943: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:7943: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:7944: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:7944: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:7945: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:7945: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:7946: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:7946: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:7947: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:7947: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:7948: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:7948: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:7949: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:7949: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:7950: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:7950: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:7951: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:7951: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:7952: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:7952: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:7953: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:7953: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:7954: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:7954: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:7955: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:7955: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:7956: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:7956: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:7957: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:7957: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:7958: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:7958: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:7959: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:7959: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:7960: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:7960: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:7961: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:7961: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:7962: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:7962: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:7963: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:7963: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:7964: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:7964: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:8277: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:8277: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:8278: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:8278: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:8279: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:8279: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:8280: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:8280: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:8281: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:8281: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:8282: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:8282: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:8283: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:8283: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:8284: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:8284: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:8285: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:8285: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:8286: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:8286: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:8287: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:8287: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:8368: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:8368: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:8369: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:8369: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:8370: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:8370: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:8371: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:8371: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:8372: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:8372: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:8373: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:8373: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:8374: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:8374: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:8375: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:8375: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:8376: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:8376: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:8377: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:8377: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:8378: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:8378: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:8431: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:8431: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:8432: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:8432: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:8433: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:8433: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:8434: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:8434: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:8435: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:8435: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:8436: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:8436: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:8437: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:8437: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:8438: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:8438: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:8439: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:8439: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:8440: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:8440: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:8441: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:8441: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:8900: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:8900: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:8901: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:8901: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:8902: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:8902: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:8903: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:8903: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:8904: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:8904: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:8905: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:8905: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:8906: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:8906: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:8907: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:8907: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:8908: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:8908: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:8909: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:8909: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:8910: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:8910: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:9182: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:9182: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:9183: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:9183: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:9184: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:9184: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:9185: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:9185: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:9186: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:9186: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:9187: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:9187: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:9188: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:9188: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:9189: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:9189: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:9190: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:9190: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:9191: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:9191: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:9192: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:9192: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:9542: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:9542: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:9543: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:9543: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:9544: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:9544: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:9545: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:9545: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:9546: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:9546: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:9547: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:9547: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:9548: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:9548: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:9549: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:9549: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:9550: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:9550: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:9551: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:9551: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:9552: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:9552: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:9553: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:9553: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:9554: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:9554: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:9555: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:9555: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:9556: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:9556: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:9557: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:9557: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:9558: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:9558: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:9559: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:9559: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:9560: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:9560: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:9561: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:9561: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:9562: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:9562: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:9563: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:9563: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:9876: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:9876: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:9877: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:9877: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:9878: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:9878: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:9879: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:9879: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:9880: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:9880: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:9881: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:9881: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:9882: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:9882: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:9883: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:9883: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:9884: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:9884: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:9885: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:9885: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:9886: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:9886: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:9967: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:9967: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:9968: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:9968: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:9969: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:9969: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:9970: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:9970: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:9971: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:9971: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:9972: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:9972: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:9973: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:9973: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:9974: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:9974: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:9975: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:9975: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:9976: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:9976: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:9977: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:9977: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:10030: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:10030: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:10031: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:10031: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:10032: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:10032: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:10033: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:10033: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:10034: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:10034: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:10035: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:10035: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:10036: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:10036: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:10037: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:10037: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:10038: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:10038: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:10039: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:10039: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:10040: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:10040: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:10499: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:10499: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:10500: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:10500: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:10501: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:10501: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:10502: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:10502: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:10503: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:10503: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:10504: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:10504: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:10505: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:10505: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:10506: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:10506: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:10507: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:10507: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:10508: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:10508: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:10509: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:10509: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:10781: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:10781: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:10782: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:10782: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:10783: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:10783: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:10784: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:10784: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:10785: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:10785: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:10786: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:10786: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:10787: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:10787: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:10788: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:10788: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:10789: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:10789: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:10790: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:10790: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:10791: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:10791: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:11141: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:11141: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:11142: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:11142: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:11143: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:11143: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:11144: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:11144: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:11145: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:11145: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:11146: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:11146: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:11147: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:11147: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:11148: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:11148: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:11149: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:11149: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:11150: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:11150: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:11151: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:11151: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:11152: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:11152: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:11153: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:11153: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:11154: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:11154: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:11155: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:11155: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:11156: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:11156: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:11157: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:11157: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:11158: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:11158: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:11159: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:11159: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:11160: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:11160: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:11161: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:11161: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:11162: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:11162: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:11475: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:11475: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:11476: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:11476: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:11477: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:11477: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:11478: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:11478: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:11479: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:11479: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:11480: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:11480: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:11481: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:11481: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:11482: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:11482: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:11483: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:11483: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:11484: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:11484: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:11485: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:11485: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:11566: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:11566: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:11567: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:11567: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:11568: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:11568: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:11569: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:11569: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:11570: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:11570: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:11571: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:11571: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:11572: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:11572: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:11573: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:11573: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:11574: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:11574: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:11575: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:11575: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:11576: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:11576: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:11629: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:11629: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:11630: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:11630: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:11631: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:11631: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:11632: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:11632: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:11633: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:11633: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:11634: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:11634: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:11635: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:11635: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:11636: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:11636: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:11637: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:11637: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:11638: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:11638: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:11639: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:11639: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:12098: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:12098: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:12099: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:12099: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:12100: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:12100: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:12101: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:12101: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:12102: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:12102: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:12103: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:12103: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:12104: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:12104: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:12105: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:12105: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:12106: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:12106: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:12107: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:12107: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:12108: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:12108: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:12380: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:12380: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:12381: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:12381: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:12382: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:12382: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:12383: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:12383: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:12384: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:12384: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:12385: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:12385: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:12386: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:12386: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:12387: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:12387: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:12388: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:12388: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:12389: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:12389: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:12390: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:12390: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:12740: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:12740: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:12741: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:12741: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:12742: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:12742: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:12743: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:12743: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:12744: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:12744: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:12745: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:12745: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:12746: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:12746: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:12747: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:12747: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:12748: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:12748: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:12749: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:12749: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:12750: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:12750: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:12751: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:12751: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:12752: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:12752: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:12753: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:12753: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:12754: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:12754: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:12755: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:12755: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:12756: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:12756: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:12757: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:12757: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:12758: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:12758: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:12759: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:12759: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:12760: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:12760: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:12761: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:12761: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:13074: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:13074: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:13075: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:13075: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:13076: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:13076: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:13077: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:13077: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:13078: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:13078: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:13079: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:13079: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:13080: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:13080: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:13081: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:13081: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:13082: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:13082: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:13083: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:13083: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:13084: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:13084: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:13165: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:13165: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:13166: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:13166: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:13167: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:13167: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:13168: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:13168: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:13169: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:13169: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:13170: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:13170: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:13171: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:13171: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:13172: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:13172: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:13173: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:13173: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:13174: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:13174: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:13175: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:13175: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:13228: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:13228: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:13229: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:13229: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:13230: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:13230: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:13231: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:13231: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:13232: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:13232: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:13233: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:13233: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:13234: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:13234: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:13235: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:13235: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:13236: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:13236: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:13237: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:13237: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:13238: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:13238: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:13697: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:13697: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:13698: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:13698: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:13699: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:13699: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:13700: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:13700: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:13701: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:13701: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:13702: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:13702: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:13703: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:13703: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:13704: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:13704: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:13705: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:13705: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:13706: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:13706: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:13707: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:13707: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:13979: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:13979: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:13980: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:13980: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:13981: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:13981: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:13982: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:13982: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:13983: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:13983: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:13984: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:13984: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:13985: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:13985: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:13986: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:13986: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:13987: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:13987: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:13988: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:13988: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:13989: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:13989: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:14339: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:14339: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:14340: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:14340: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:14341: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:14341: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:14342: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:14342: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:14343: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:14343: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:14344: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:14344: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:14345: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:14345: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:14346: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:14346: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:14347: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:14347: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:14348: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:14348: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:14349: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:14349: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:14350: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:14350: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:14351: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:14351: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:14352: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:14352: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:14353: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:14353: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:14354: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:14354: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:14355: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:14355: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:14356: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:14356: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:14357: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:14357: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:14358: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:14358: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:14359: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:14359: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:14360: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:14360: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:14673: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:14673: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:14674: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:14674: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:14675: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:14675: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:14676: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:14676: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:14677: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:14677: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:14678: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:14678: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:14679: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:14679: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:14680: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:14680: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:14681: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:14681: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:14682: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:14682: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:14683: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:14683: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:14764: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:14764: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:14765: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:14765: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:14766: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:14766: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:14767: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:14767: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:14768: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:14768: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:14769: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:14769: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:14770: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:14770: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:14771: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:14771: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:14772: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:14772: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:14773: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:14773: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:14774: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:14774: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:14827: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:14827: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:14828: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:14828: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:14829: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:14829: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:14830: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:14830: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:14831: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:14831: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:14832: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:14832: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:14833: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:14833: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:14834: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:14834: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:14835: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:14835: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:14836: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:14836: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:14837: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:14837: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:15296: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:15296: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:15297: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:15297: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:15298: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:15298: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:15299: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:15299: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:15300: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:15300: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:15301: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:15301: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:15302: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:15302: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:15303: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:15303: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:15304: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:15304: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:15305: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:15305: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:15306: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:15306: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:15578: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:15578: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:15579: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:15579: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:15580: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:15580: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:15581: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:15581: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:15582: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:15582: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:15583: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:15583: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:15584: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:15584: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:15585: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:15585: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:15586: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:15586: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:15587: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:15587: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:15588: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:15588: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:15938: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:15938: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:15939: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:15939: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:15940: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:15940: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:15941: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:15941: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:15942: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:15942: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:15943: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:15943: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:15944: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:15944: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:15945: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:15945: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:15946: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:15946: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:15947: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:15947: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:15948: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:15948: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:15949: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:15949: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:15950: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:15950: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:15951: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:15951: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:15952: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:15952: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:15953: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:15953: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:15954: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:15954: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:15955: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:15955: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:15956: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:15956: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:15957: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:15957: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:15958: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:15958: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:15959: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:15959: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:16272: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:16272: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:16273: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:16273: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:16274: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:16274: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:16275: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:16275: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:16276: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:16276: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:16277: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:16277: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:16278: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:16278: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:16279: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:16279: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:16280: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:16280: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:16281: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:16281: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:16282: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:16282: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:16363: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:16363: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:16364: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:16364: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:16365: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:16365: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:16366: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:16366: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:16367: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:16367: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:16368: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:16368: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:16369: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:16369: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:16370: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:16370: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:16371: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:16371: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:16372: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:16372: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:16373: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:16373: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:16426: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:16426: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:16427: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:16427: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:16428: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:16428: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:16429: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:16429: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:16430: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:16430: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:16431: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:16431: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:16432: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:16432: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:16433: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:16433: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:16434: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:16434: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:16435: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:16435: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:16436: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:16436: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:16895: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:16895: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:16896: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:16896: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:16897: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:16897: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:16898: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:16898: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:16899: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:16899: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:16900: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:16900: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:16901: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:16901: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:16902: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:16902: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:16903: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:16903: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:16904: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:16904: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:16905: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:16905: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:17177: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:17177: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:17178: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:17178: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:17179: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:17179: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:17180: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:17180: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:17181: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:17181: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:17182: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:17182: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:17183: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:17183: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:17184: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:17184: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:17185: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:17185: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:17186: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:17186: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:17187: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:17187: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:17537: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:17537: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:17538: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:17538: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:17539: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:17539: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:17540: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:17540: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:17541: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:17541: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:17542: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:17542: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:17543: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:17543: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:17544: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:17544: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:17545: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:17545: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:17546: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:17546: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:17547: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:17547: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:17548: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:17548: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:17549: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:17549: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:17550: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:17550: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:17551: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:17551: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:17552: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:17552: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:17553: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:17553: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:17554: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:17554: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:17555: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:17555: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:17556: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:17556: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:17557: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:17557: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:17558: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:17558: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:17871: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:17871: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:17872: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:17872: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:17873: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:17873: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:17874: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:17874: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:17875: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:17875: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:17876: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:17876: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:17877: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:17877: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:17878: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:17878: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:17879: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:17879: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:17880: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:17880: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:17881: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:17881: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:17962: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:17962: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:17963: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:17963: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:17964: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:17964: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:17965: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:17965: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:17966: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:17966: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:17967: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:17967: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:17968: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:17968: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:17969: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:17969: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:17970: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:17970: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:17971: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:17971: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:17972: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:17972: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:18025: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:18025: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:18026: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:18026: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:18027: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:18027: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:18028: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:18028: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:18029: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:18029: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:18030: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:18030: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:18031: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:18031: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:18032: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:18032: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:18033: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:18033: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:18034: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:18034: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:18035: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:18035: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:18494: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:18494: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:18495: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:18495: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:18496: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:18496: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:18497: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:18497: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:18498: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:18498: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:18499: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:18499: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:18500: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:18500: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:18501: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:18501: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:18502: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:18502: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:18503: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:18503: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:18504: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:18504: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:18776: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:18776: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:18777: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:18777: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:18778: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:18778: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:18779: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:18779: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:18780: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:18780: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:18781: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:18781: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:18782: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:18782: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:18783: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:18783: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:18784: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:18784: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:18785: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:18785: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:18786: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:18786: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:19136: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:19136: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:19137: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:19137: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:19138: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:19138: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:19139: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:19139: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:19140: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:19140: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:19141: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:19141: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:19142: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:19142: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:19143: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:19143: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:19144: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:19144: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:19145: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:19145: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:19146: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:19146: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:19147: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:19147: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:19148: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:19148: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:19149: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:19149: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:19150: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:19150: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:19151: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:19151: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:19152: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:19152: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:19153: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:19153: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:19154: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:19154: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:19155: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:19155: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:19156: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:19156: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:19157: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:19157: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:19470: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:19470: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:19471: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:19471: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:19472: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:19472: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:19473: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:19473: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:19474: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:19474: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:19475: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:19475: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:19476: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:19476: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:19477: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:19477: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:19478: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:19478: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:19479: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:19479: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:19480: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:19480: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:19561: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:19561: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:19562: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:19562: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:19563: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:19563: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:19564: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:19564: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:19565: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:19565: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:19566: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:19566: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:19567: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:19567: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:19568: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:19568: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:19569: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:19569: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:19570: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:19570: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:19571: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:19571: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:19624: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:19624: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:19625: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:19625: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:19626: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:19626: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:19627: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:19627: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:19628: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:19628: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:19629: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:19629: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:19630: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:19630: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:19631: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:19631: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:19632: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:19632: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:19633: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:19633: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:19634: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:19634: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:20093: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:20093: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:20094: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:20094: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:20095: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:20095: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:20096: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:20096: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:20097: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:20097: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:20098: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:20098: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:20099: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:20099: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:20100: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:20100: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:20101: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:20101: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:20102: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:20102: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:20103: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:20103: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:20375: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:20375: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:20376: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:20376: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:20377: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:20377: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:20378: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:20378: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:20379: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:20379: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:20380: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:20380: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:20381: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:20381: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:20382: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:20382: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:20383: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:20383: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:20384: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:20384: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:20385: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:20385: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:20735: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:20735: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:20736: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:20736: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:20737: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:20737: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:20738: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:20738: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:20739: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:20739: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:20740: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:20740: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:20741: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:20741: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:20742: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:20742: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:20743: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:20743: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:20744: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:20744: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:20745: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:20745: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:20746: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:20746: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:20747: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:20747: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:20748: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:20748: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:20749: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:20749: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:20750: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:20750: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:20751: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:20751: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:20752: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:20752: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:20753: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:20753: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:20754: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:20754: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:20755: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:20755: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:20756: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:20756: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:21069: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:21069: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:21070: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:21070: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:21071: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:21071: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:21072: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:21072: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:21073: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:21073: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:21074: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:21074: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:21075: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:21075: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:21076: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:21076: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:21077: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:21077: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:21078: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:21078: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:21079: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:21079: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:21160: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:21160: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:21161: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:21161: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:21162: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:21162: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:21163: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:21163: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:21164: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:21164: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:21165: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:21165: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:21166: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:21166: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:21167: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:21167: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:21168: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:21168: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:21169: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:21169: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:21170: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:21170: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:21223: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:21223: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:21224: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:21224: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:21225: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:21225: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:21226: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:21226: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:21227: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:21227: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:21228: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:21228: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:21229: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:21229: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:21230: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:21230: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:21231: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:21231: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:21232: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:21232: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:21233: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:21233: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:21692: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:21692: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:21693: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:21693: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:21694: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:21694: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:21695: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:21695: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:21696: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:21696: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:21697: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:21697: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:21698: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:21698: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:21699: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:21699: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:21700: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:21700: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:21701: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:21701: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:21702: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:21702: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:21974: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:21974: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:21975: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:21975: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:21976: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:21976: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:21977: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:21977: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:21978: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:21978: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:21979: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:21979: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:21980: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:21980: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:21981: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:21981: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:21982: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:21982: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:21983: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:21983: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:21984: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:21984: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:22334: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:22334: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:22335: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:22335: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:22336: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:22336: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:22337: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:22337: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:22338: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:22338: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:22339: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:22339: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:22340: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:22340: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:22341: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:22341: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:22342: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:22342: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:22343: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:22343: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:22344: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:22344: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:22345: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:22345: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:22346: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:22346: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:22347: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:22347: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:22348: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:22348: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:22349: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:22349: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:22350: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:22350: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:22351: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:22351: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:22352: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:22352: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:22353: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:22353: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:22354: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:22354: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:22355: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:22355: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:22668: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:22668: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:22669: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:22669: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:22670: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:22670: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:22671: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:22671: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:22672: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:22672: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:22673: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:22673: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:22674: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:22674: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:22675: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:22675: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:22676: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:22676: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:22677: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:22677: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:22678: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:22678: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:22759: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:22759: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:22760: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:22760: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:22761: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:22761: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:22762: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:22762: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:22763: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:22763: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:22764: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:22764: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:22765: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:22765: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:22766: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:22766: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:22767: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:22767: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:22768: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:22768: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:22769: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:22769: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:22822: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:22822: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:22823: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:22823: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:22824: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:22824: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:22825: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:22825: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:22826: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:22826: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:22827: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:22827: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:22828: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:22828: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:22829: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:22829: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:22830: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:22830: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:22831: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:22831: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:22832: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:22832: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:23291: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:23291: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:23292: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:23292: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:23293: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:23293: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:23294: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:23294: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:23295: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:23295: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:23296: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:23296: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:23297: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:23297: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:23298: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:23298: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:23299: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:23299: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:23300: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:23300: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:23301: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:23301: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:23573: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:23573: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:23574: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:23574: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:23575: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:23575: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:23576: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:23576: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:23577: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:23577: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:23578: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:23578: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:23579: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:23579: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:23580: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:23580: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:23581: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:23581: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:23582: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:23582: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:23583: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:23583: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:23933: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:23933: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:23934: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:23934: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:23935: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:23935: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:23936: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:23936: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:23937: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:23937: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:23938: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:23938: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:23939: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:23939: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:23940: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:23940: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:23941: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:23941: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:23942: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:23942: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:23943: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:23943: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:23944: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:23944: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:23945: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:23945: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:23946: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:23946: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:23947: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:23947: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:23948: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:23948: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:23949: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:23949: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:23950: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:23950: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:23951: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:23951: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:23952: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:23952: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:23953: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:23953: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:23954: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:23954: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:24267: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:24267: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:24268: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:24268: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:24269: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:24269: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:24270: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:24270: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:24271: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:24271: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:24272: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:24272: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:24273: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:24273: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:24274: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:24274: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:24275: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:24275: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:24276: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:24276: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:24277: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:24277: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:24358: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:24358: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:24359: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:24359: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:24360: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:24360: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:24361: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:24361: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:24362: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:24362: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:24363: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:24363: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:24364: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:24364: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:24365: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:24365: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:24366: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:24366: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:24367: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:24367: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:24368: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:24368: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:24421: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:24421: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:24422: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:24422: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:24423: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:24423: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:24424: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:24424: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:24425: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:24425: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:24426: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:24426: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:24427: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:24427: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:24428: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:24428: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:24429: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:24429: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:24430: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:24430: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:24431: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:24431: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:24890: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:24890: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:24891: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:24891: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:24892: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:24892: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:24893: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:24893: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:24894: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:24894: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:24895: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:24895: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:24896: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:24896: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:24897: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:24897: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:24898: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:24898: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:24899: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:24899: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:24900: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:24900: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:25172: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:25172: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:25173: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:25173: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:25174: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:25174: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:25175: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:25175: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:25176: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:25176: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:25177: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:25177: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:25178: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:25178: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:25179: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:25179: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:25180: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:25180: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:25181: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:25181: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:25182: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:25182: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:25532: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:25532: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:25533: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:25533: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:25534: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:25534: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:25535: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:25535: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:25536: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:25536: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:25537: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:25537: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:25538: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:25538: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:25539: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:25539: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:25540: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:25540: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:25541: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:25541: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:25542: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:25542: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:25543: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:25543: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:25544: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:25544: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:25545: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:25545: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:25546: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:25546: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:25547: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:25547: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:25548: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:25548: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:25549: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:25549: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:25550: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:25550: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:25551: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:25551: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:25552: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:25552: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:25553: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:25553: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:25866: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:25866: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:25867: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:25867: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:25868: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:25868: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:25869: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:25869: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:25870: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:25870: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:25871: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:25871: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:25872: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:25872: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:25873: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:25873: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:25874: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:25874: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:25875: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:25875: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:25876: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:25876: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:25957: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:25957: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:25958: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:25958: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:25959: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:25959: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:25960: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:25960: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:25961: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:25961: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:25962: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:25962: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:25963: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:25963: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:25964: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:25964: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:25965: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:25965: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:25966: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:25966: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:25967: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:25967: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:26020: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:26020: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:26021: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:26021: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:26022: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:26022: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:26023: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:26023: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:26024: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:26024: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:26025: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:26025: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:26026: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:26026: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:26027: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:26027: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:26028: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:26028: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:26029: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:26029: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:26030: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:26030: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:26489: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:26489: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:26490: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:26490: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:26491: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:26491: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:26492: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:26492: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:26493: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:26493: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:26494: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:26494: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:26495: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:26495: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:26496: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:26496: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:26497: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:26497: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:26498: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:26498: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:26499: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:26499: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:26771: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:26771: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:26772: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:26772: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:26773: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:26773: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:26774: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:26774: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:26775: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:26775: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:26776: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:26776: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:26777: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:26777: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:26778: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:26778: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:26779: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:26779: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:26780: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:26780: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:26781: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:26781: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:27131: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:27131: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:27132: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:27132: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:27133: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:27133: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:27134: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:27134: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:27135: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:27135: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:27136: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:27136: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:27137: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:27137: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:27138: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:27138: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:27139: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:27139: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:27140: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:27140: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:27141: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:27141: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:27142: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:27142: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:27143: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:27143: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:27144: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:27144: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:27145: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:27145: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:27146: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:27146: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:27147: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:27147: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:27148: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:27148: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:27149: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:27149: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:27150: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:27150: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:27151: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:27151: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:27152: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:27152: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:27465: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:27465: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:27466: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:27466: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:27467: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:27467: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:27468: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:27468: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:27469: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:27469: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:27470: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:27470: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:27471: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:27471: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:27472: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:27472: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:27473: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:27473: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:27474: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:27474: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:27475: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:27475: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:27556: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:27556: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:27557: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:27557: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:27558: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:27558: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:27559: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:27559: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:27560: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:27560: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:27561: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:27561: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:27562: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:27562: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:27563: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:27563: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:27564: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:27564: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:27565: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:27565: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:27566: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:27566: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:27619: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:27619: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:27620: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:27620: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:27621: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:27621: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:27622: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:27622: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:27623: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:27623: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:27624: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:27624: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:27625: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:27625: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:27626: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:27626: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:27627: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:27627: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:27628: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:27628: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:27629: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:27629: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:28088: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:28088: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:28089: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:28089: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:28090: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:28090: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:28091: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:28091: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:28092: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:28092: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:28093: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:28093: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:28094: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:28094: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:28095: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:28095: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:28096: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:28096: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:28097: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:28097: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:28098: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:28098: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:28370: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:28370: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:28371: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:28371: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:28372: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:28372: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:28373: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:28373: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:28374: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:28374: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:28375: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:28375: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:28376: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:28376: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:28377: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:28377: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:28378: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:28378: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:28379: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:28379: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:28380: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:28380: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:28730: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:28730: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:28731: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:28731: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:28732: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:28732: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:28733: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:28733: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:28734: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:28734: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:28735: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:28735: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:28736: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:28736: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:28737: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:28737: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:28738: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:28738: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:28739: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:28739: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:28740: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:28740: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:28741: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:28741: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:28742: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:28742: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:28743: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:28743: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:28744: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:28744: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:28745: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:28745: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:28746: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:28746: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:28747: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:28747: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:28748: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:28748: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:28749: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:28749: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:28750: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:28750: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:28751: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:28751: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:29064: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:29064: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:29065: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:29065: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:29066: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:29066: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:29067: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:29067: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:29068: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:29068: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:29069: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:29069: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:29070: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:29070: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:29071: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:29071: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:29072: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:29072: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:29073: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:29073: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:29074: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:29074: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:29155: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:29155: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:29156: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:29156: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:29157: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:29157: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:29158: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:29158: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:29159: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:29159: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:29160: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:29160: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:29161: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:29161: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:29162: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:29162: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:29163: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:29163: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:29164: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:29164: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:29165: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:29165: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:29218: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:29218: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:29219: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:29219: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:29220: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:29220: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:29221: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:29221: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:29222: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:29222: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:29223: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:29223: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:29224: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:29224: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:29225: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:29225: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:29226: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:29226: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:29227: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:29227: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:29228: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:29228: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:29687: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:29687: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:29688: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:29688: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:29689: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:29689: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:29690: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:29690: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:29691: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:29691: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:29692: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:29692: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:29693: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:29693: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:29694: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:29694: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:29695: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:29695: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:29696: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:29696: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:29697: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:29697: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:29969: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:29969: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:29970: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:29970: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:29971: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:29971: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:29972: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:29972: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:29973: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:29973: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:29974: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:29974: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:29975: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:29975: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:29976: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:29976: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:29977: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:29977: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:29978: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:29978: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:29979: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:29979: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:30329: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:30329: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:30330: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:30330: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:30331: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:30331: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:30332: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:30332: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:30333: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:30333: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:30334: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:30334: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:30335: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:30335: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:30336: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:30336: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:30337: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:30337: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:30338: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:30338: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:30339: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:30339: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:30340: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:30340: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:30341: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:30341: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:30342: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:30342: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:30343: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:30343: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:30344: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:30344: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:30345: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:30345: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:30346: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:30346: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:30347: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:30347: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:30348: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:30348: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:30349: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:30349: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:30350: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:30350: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:30663: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:30663: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:30664: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:30664: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:30665: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:30665: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:30666: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:30666: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:30667: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:30667: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:30668: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:30668: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:30669: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:30669: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:30670: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:30670: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:30671: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:30671: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:30672: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:30672: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:30673: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:30673: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:30754: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:30754: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:30755: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:30755: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:30756: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:30756: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:30757: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:30757: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:30758: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:30758: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:30759: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:30759: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:30760: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:30760: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:30761: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:30761: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:30762: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:30762: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:30763: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:30763: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:30764: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:30764: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:30817: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:30817: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:30818: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:30818: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:30819: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:30819: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:30820: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:30820: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:30821: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:30821: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:30822: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:30822: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:30823: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:30823: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:30824: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:30824: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:30825: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:30825: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:30826: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:30826: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:30827: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:30827: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:31286: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:31286: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:31287: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:31287: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:31288: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:31288: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:31289: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:31289: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:31290: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:31290: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:31291: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:31291: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:31292: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:31292: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:31293: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:31293: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:31294: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:31294: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:31295: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:31295: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:31296: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:31296: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:31568: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:31568: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:31569: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:31569: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:31570: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:31570: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:31571: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:31571: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:31572: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:31572: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:31573: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:31573: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:31574: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:31574: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:31575: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:31575: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:31576: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:31576: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:31577: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:31577: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:31578: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:31578: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:31928: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:31928: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:31929: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:31929: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:31930: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:31930: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:31931: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:31931: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:31932: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:31932: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:31933: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:31933: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:31934: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:31934: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:31935: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:31935: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:31936: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:31936: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:31937: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:31937: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:31938: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:31938: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:31939: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:31939: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:31940: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:31940: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:31941: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:31941: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:31942: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:31942: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:31943: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:31943: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:31944: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:31944: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:31945: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:31945: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:31946: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:31946: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:31947: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:31947: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:31948: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:31948: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:31949: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:31949: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:32262: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:32262: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:32263: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:32263: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:32264: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:32264: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:32265: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:32265: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:32266: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:32266: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:32267: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:32267: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:32268: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:32268: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:32269: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:32269: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:32270: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:32270: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:32271: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:32271: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:32272: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:32272: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:32353: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:32353: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:32354: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:32354: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:32355: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:32355: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:32356: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:32356: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:32357: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:32357: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:32358: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:32358: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:32359: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:32359: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:32360: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:32360: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:32361: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:32361: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:32362: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:32362: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:32363: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:32363: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:32416: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:32416: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:32417: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:32417: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:32418: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:32418: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:32419: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:32419: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:32420: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:32420: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:32421: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:32421: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:32422: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:32422: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:32423: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:32423: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:32424: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:32424: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:32425: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:32425: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:32426: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:32426: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:32568: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:32589: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:32589: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:32589: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:32605: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:32605: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:32605: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:32626: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:32626: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:32626: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:32627: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:32627: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:32627: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:32646: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:32646: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:32646: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:32653: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:32653: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:32653: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:32657: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:32657: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:32657: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:32739: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:32742: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:32745: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:32748: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:32751: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:32754: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:32757: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:32760: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:32763: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:32766: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:32769: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:32772: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:32775: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:32778: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:32781: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:32784: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:32787: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:32790: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:32793: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:32796: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:32814: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:32816: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:32817: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:32821: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:32825: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:32826: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:32828: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:32831: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:32833: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:32836: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:32837: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:32838: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:32839: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:32842: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:32844: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:32845: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:32848: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:32849: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:32851: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:32853: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:32856: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:32859: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:32863: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:32866: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:32870: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:32874: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:32875: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:32876: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:32880: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:32884: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:32886: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:32887: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:32892: SER ==> SET
data/biojava-live-1.7.1/tests/files/2kc9.cif:32894: SER ==> SET
data/biojava-live-1.7.1/tests/files/2gox_v315.pdb:432: SER ==> SET
data/biojava-live-1.7.1/tests/files/2gox_v315.pdb:439: SER ==> SET
data/biojava-live-1.7.1/tests/files/2gox_v315.pdb:459: SER ==> SET
data/biojava-live-1.7.1/tests/files/2gox_v315.pdb:461: SER ==> SET
data/biojava-live-1.7.1/tests/files/2gox_v315.pdb:465: SER ==> SET
data/biojava-live-1.7.1/tests/files/2gox_v315.pdb:467: SER ==> SET
data/biojava-live-1.7.1/tests/files/2gox_v315.pdb:470: SER ==> SET
data/biojava-live-1.7.1/tests/files/2gox_v315.pdb:470: SER ==> SET
data/biojava-live-1.7.1/tests/files/2gox_v315.pdb:471: SER ==> SET
data/biojava-live-1.7.1/tests/files/2gox_v315.pdb:475: SER ==> SET
data/biojava-live-1.7.1/tests/files/2gox_v315.pdb:475: SER ==> SET
data/biojava-live-1.7.1/tests/files/2gox_v315.pdb:476: SER ==> SET
data/biojava-live-1.7.1/tests/files/2gox_v315.pdb:477: SER ==> SET
data/biojava-live-1.7.1/tests/files/2gox_v315.pdb:478: SER ==> SET
data/biojava-live-1.7.1/tests/files/2gox_v315.pdb:482: SER ==> SET
data/biojava-live-1.7.1/tests/files/2gox_v315.pdb:483: SER ==> SET
data/biojava-live-1.7.1/tests/files/2gox_v315.pdb:483: SER ==> SET
data/biojava-live-1.7.1/tests/files/2gox_v315.pdb:485: SER ==> SET
data/biojava-live-1.7.1/tests/files/2gox_v315.pdb:488: SER ==> SET
data/biojava-live-1.7.1/tests/files/2gox_v315.pdb:491: SER ==> SET
data/biojava-live-1.7.1/tests/files/2gox_v315.pdb:495: SER ==> SET
data/biojava-live-1.7.1/tests/files/2gox_v315.pdb:496: SER ==> SET
data/biojava-live-1.7.1/tests/files/2gox_v315.pdb:498: SER ==> SET
data/biojava-live-1.7.1/tests/files/2gox_v315.pdb:498: SER ==> SET
data/biojava-live-1.7.1/tests/files/2gox_v315.pdb:499: SER ==> SET
data/biojava-live-1.7.1/tests/files/2gox_v315.pdb:503: SER ==> SET
data/biojava-live-1.7.1/tests/files/2gox_v315.pdb:503: SER ==> SET
data/biojava-live-1.7.1/tests/files/2gox_v315.pdb:504: SER ==> SET
data/biojava-live-1.7.1/tests/files/2gox_v315.pdb:505: SER ==> SET
data/biojava-live-1.7.1/tests/files/2gox_v315.pdb:506: SER ==> SET
data/biojava-live-1.7.1/tests/files/2gox_v315.pdb:510: SER ==> SET
data/biojava-live-1.7.1/tests/files/2gox_v315.pdb:511: SER ==> SET
data/biojava-live-1.7.1/tests/files/2gox_v315.pdb:511: SER ==> SET
data/biojava-live-1.7.1/tests/files/2gox_v315.pdb:513: SER ==> SET
data/biojava-live-1.7.1/tests/files/2gox_v315.pdb:516: SER ==> SET
data/biojava-live-1.7.1/tests/files/2gox_v315.pdb:519: SER ==> SET
data/biojava-live-1.7.1/tests/files/2gox_v315.pdb:523: SER ==> SET
data/biojava-live-1.7.1/tests/files/2gox_v315.pdb:524: SER ==> SET
data/biojava-live-1.7.1/tests/files/2gox_v315.pdb:529: SER ==> SET
data/biojava-live-1.7.1/tests/files/2gox_v315.pdb:533: SER ==> SET
data/biojava-live-1.7.1/tests/files/2gox_v315.pdb:548: SER ==> SET
data/biojava-live-1.7.1/tests/files/2gox_v315.pdb:549: SER ==> SET
data/biojava-live-1.7.1/tests/files/2gox_v315.pdb:550: SER ==> SET
data/biojava-live-1.7.1/tests/files/2gox_v315.pdb:551: SER ==> SET
data/biojava-live-1.7.1/tests/files/2gox_v315.pdb:552: SER ==> SET
data/biojava-live-1.7.1/tests/files/2gox_v315.pdb:553: SER ==> SET
data/biojava-live-1.7.1/tests/files/2gox_v315.pdb:565: SER ==> SET
data/biojava-live-1.7.1/tests/files/2gox_v315.pdb:566: SER ==> SET
data/biojava-live-1.7.1/tests/files/2gox_v315.pdb:567: SER ==> SET
data/biojava-live-1.7.1/tests/files/2gox_v315.pdb:568: SER ==> SET
data/biojava-live-1.7.1/tests/files/2gox_v315.pdb:569: SER ==> SET
data/biojava-live-1.7.1/tests/files/2gox_v315.pdb:570: SER ==> SET
data/biojava-live-1.7.1/tests/files/2gox_v315.pdb:675: SER ==> SET
data/biojava-live-1.7.1/tests/files/2gox_v315.pdb:676: SER ==> SET
data/biojava-live-1.7.1/tests/files/2gox_v315.pdb:677: SER ==> SET
data/biojava-live-1.7.1/tests/files/2gox_v315.pdb:678: SER ==> SET
data/biojava-live-1.7.1/tests/files/2gox_v315.pdb:679: SER ==> SET
data/biojava-live-1.7.1/tests/files/2gox_v315.pdb:680: SER ==> SET
data/biojava-live-1.7.1/tests/files/2gox_v315.pdb:1105: SER ==> SET
data/biojava-live-1.7.1/tests/files/2gox_v315.pdb:1106: SER ==> SET
data/biojava-live-1.7.1/tests/files/2gox_v315.pdb:1107: SER ==> SET
data/biojava-live-1.7.1/tests/files/2gox_v315.pdb:1108: SER ==> SET
data/biojava-live-1.7.1/tests/files/2gox_v315.pdb:1109: SER ==> SET
data/biojava-live-1.7.1/tests/files/2gox_v315.pdb:1110: SER ==> SET
data/biojava-live-1.7.1/tests/files/2gox_v315.pdb:1111: SER ==> SET
data/biojava-live-1.7.1/tests/files/2gox_v315.pdb:1112: SER ==> SET
data/biojava-live-1.7.1/tests/files/2gox_v315.pdb:1113: SER ==> SET
data/biojava-live-1.7.1/tests/files/2gox_v315.pdb:1114: SER ==> SET
data/biojava-live-1.7.1/tests/files/2gox_v315.pdb:1115: SER ==> SET
data/biojava-live-1.7.1/tests/files/2gox_v315.pdb:1116: SER ==> SET
data/biojava-live-1.7.1/tests/files/2gox_v315.pdb:1193: SER ==> SET
data/biojava-live-1.7.1/tests/files/2gox_v315.pdb:1194: SER ==> SET
data/biojava-live-1.7.1/tests/files/2gox_v315.pdb:1195: SER ==> SET
data/biojava-live-1.7.1/tests/files/2gox_v315.pdb:1196: SER ==> SET
data/biojava-live-1.7.1/tests/files/2gox_v315.pdb:1197: SER ==> SET
data/biojava-live-1.7.1/tests/files/2gox_v315.pdb:1198: SER ==> SET
data/biojava-live-1.7.1/tests/files/2gox_v315.pdb:1293: SER ==> SET
data/biojava-live-1.7.1/tests/files/2gox_v315.pdb:1294: SER ==> SET
data/biojava-live-1.7.1/tests/files/2gox_v315.pdb:1295: SER ==> SET
data/biojava-live-1.7.1/tests/files/2gox_v315.pdb:1296: SER ==> SET
data/biojava-live-1.7.1/tests/files/2gox_v315.pdb:1297: SER ==> SET
data/biojava-live-1.7.1/tests/files/2gox_v315.pdb:1298: SER ==> SET
data/biojava-live-1.7.1/tests/files/2gox_v315.pdb:1364: SER ==> SET
data/biojava-live-1.7.1/tests/files/2gox_v315.pdb:1365: SER ==> SET
data/biojava-live-1.7.1/tests/files/2gox_v315.pdb:1366: SER ==> SET
data/biojava-live-1.7.1/tests/files/2gox_v315.pdb:1367: SER ==> SET
data/biojava-live-1.7.1/tests/files/2gox_v315.pdb:1368: SER ==> SET
data/biojava-live-1.7.1/tests/files/2gox_v315.pdb:1369: SER ==> SET
data/biojava-live-1.7.1/tests/files/2gox_v315.pdb:1777: SER ==> SET
data/biojava-live-1.7.1/tests/files/2gox_v315.pdb:1778: SER ==> SET
data/biojava-live-1.7.1/tests/files/2gox_v315.pdb:1779: SER ==> SET
data/biojava-live-1.7.1/tests/files/2gox_v315.pdb:1780: SER ==> SET
data/biojava-live-1.7.1/tests/files/2gox_v315.pdb:1781: SER ==> SET
data/biojava-live-1.7.1/tests/files/2gox_v315.pdb:1782: SER ==> SET
data/biojava-live-1.7.1/tests/files/2gox_v315.pdb:1887: SER ==> SET
data/biojava-live-1.7.1/tests/files/2gox_v315.pdb:1888: SER ==> SET
data/biojava-live-1.7.1/tests/files/2gox_v315.pdb:1889: SER ==> SET
data/biojava-live-1.7.1/tests/files/2gox_v315.pdb:1890: SER ==> SET
data/biojava-live-1.7.1/tests/files/2gox_v315.pdb:1891: SER ==> SET
data/biojava-live-1.7.1/tests/files/2gox_v315.pdb:1892: SER ==> SET
data/biojava-live-1.7.1/tests/files/2gox_v315.pdb:1912: SER ==> SET
data/biojava-live-1.7.1/tests/files/2gox_v315.pdb:1913: SER ==> SET
data/biojava-live-1.7.1/tests/files/2gox_v315.pdb:1914: SER ==> SET
data/biojava-live-1.7.1/tests/files/2gox_v315.pdb:1915: SER ==> SET
data/biojava-live-1.7.1/tests/files/2gox_v315.pdb:1916: SER ==> SET
data/biojava-live-1.7.1/tests/files/2gox_v315.pdb:1917: SER ==> SET
data/biojava-live-1.7.1/tests/files/2gox_v315.pdb:2056: SER ==> SET
data/biojava-live-1.7.1/tests/files/2gox_v315.pdb:2057: SER ==> SET
data/biojava-live-1.7.1/tests/files/2gox_v315.pdb:2058: SER ==> SET
data/biojava-live-1.7.1/tests/files/2gox_v315.pdb:2059: SER ==> SET
data/biojava-live-1.7.1/tests/files/2gox_v315.pdb:2060: SER ==> SET
data/biojava-live-1.7.1/tests/files/2gox_v315.pdb:2061: SER ==> SET
data/biojava-live-1.7.1/tests/files/2gox_v315.pdb:2432: SER ==> SET
data/biojava-live-1.7.1/tests/files/2gox_v315.pdb:2433: SER ==> SET
data/biojava-live-1.7.1/tests/files/2gox_v315.pdb:2434: SER ==> SET
data/biojava-live-1.7.1/tests/files/2gox_v315.pdb:2435: SER ==> SET
data/biojava-live-1.7.1/tests/files/2gox_v315.pdb:2436: SER ==> SET
data/biojava-live-1.7.1/tests/files/2gox_v315.pdb:2437: SER ==> SET
data/biojava-live-1.7.1/tests/files/2gox_v315.pdb:2713: SER ==> SET
data/biojava-live-1.7.1/tests/files/2gox_v315.pdb:2714: SER ==> SET
data/biojava-live-1.7.1/tests/files/2gox_v315.pdb:2715: SER ==> SET
data/biojava-live-1.7.1/tests/files/2gox_v315.pdb:2716: SER ==> SET
data/biojava-live-1.7.1/tests/files/2gox_v315.pdb:2717: SER ==> SET
data/biojava-live-1.7.1/tests/files/2gox_v315.pdb:2718: SER ==> SET
data/biojava-live-1.7.1/tests/files/2gox_v315.pdb:3090: SER ==> SET
data/biojava-live-1.7.1/tests/files/2gox_v315.pdb:3091: SER ==> SET
data/biojava-live-1.7.1/tests/files/2gox_v315.pdb:3092: SER ==> SET
data/biojava-live-1.7.1/tests/files/2gox_v315.pdb:3093: SER ==> SET
data/biojava-live-1.7.1/tests/files/2gox_v315.pdb:3094: SER ==> SET
data/biojava-live-1.7.1/tests/files/2gox_v315.pdb:3095: SER ==> SET
data/biojava-live-1.7.1/tests/files/2gox_v315.pdb:3189: SER ==> SET
data/biojava-live-1.7.1/tests/files/2gox_v315.pdb:3190: SER ==> SET
data/biojava-live-1.7.1/tests/files/2gox_v315.pdb:3191: SER ==> SET
data/biojava-live-1.7.1/tests/files/2gox_v315.pdb:3192: SER ==> SET
data/biojava-live-1.7.1/tests/files/2gox_v315.pdb:3193: SER ==> SET
data/biojava-live-1.7.1/tests/files/2gox_v315.pdb:3194: SER ==> SET
data/biojava-live-1.7.1/tests/files/2gox_v315.pdb:3390: SER ==> SET
data/biojava-live-1.7.1/tests/files/2gox_v315.pdb:3391: SER ==> SET
data/biojava-live-1.7.1/tests/files/2gox_v315.pdb:3392: SER ==> SET
data/biojava-live-1.7.1/tests/files/2gox_v315.pdb:3393: SER ==> SET
data/biojava-live-1.7.1/tests/files/2gox_v315.pdb:3394: SER ==> SET
data/biojava-live-1.7.1/tests/files/2gox_v315.pdb:3395: SER ==> SET
data/biojava-live-1.7.1/tests/files/2gox_v315.pdb:3407: SER ==> SET
data/biojava-live-1.7.1/tests/files/2gox_v315.pdb:3408: SER ==> SET
data/biojava-live-1.7.1/tests/files/2gox_v315.pdb:3409: SER ==> SET
data/biojava-live-1.7.1/tests/files/2gox_v315.pdb:3410: SER ==> SET
data/biojava-live-1.7.1/tests/files/2gox_v315.pdb:3411: SER ==> SET
data/biojava-live-1.7.1/tests/files/2gox_v315.pdb:3412: SER ==> SET
data/biojava-live-1.7.1/tests/files/2gox_v315.pdb:3517: SER ==> SET
data/biojava-live-1.7.1/tests/files/2gox_v315.pdb:3518: SER ==> SET
data/biojava-live-1.7.1/tests/files/2gox_v315.pdb:3519: SER ==> SET
data/biojava-live-1.7.1/tests/files/2gox_v315.pdb:3520: SER ==> SET
data/biojava-live-1.7.1/tests/files/2gox_v315.pdb:3521: SER ==> SET
data/biojava-live-1.7.1/tests/files/2gox_v315.pdb:3522: SER ==> SET
data/biojava-live-1.7.1/tests/files/2gox_v315.pdb:3947: SER ==> SET
data/biojava-live-1.7.1/tests/files/2gox_v315.pdb:3948: SER ==> SET
data/biojava-live-1.7.1/tests/files/2gox_v315.pdb:3949: SER ==> SET
data/biojava-live-1.7.1/tests/files/2gox_v315.pdb:3950: SER ==> SET
data/biojava-live-1.7.1/tests/files/2gox_v315.pdb:3951: SER ==> SET
data/biojava-live-1.7.1/tests/files/2gox_v315.pdb:3952: SER ==> SET
data/biojava-live-1.7.1/tests/files/2gox_v315.pdb:3953: SER ==> SET
data/biojava-live-1.7.1/tests/files/2gox_v315.pdb:3954: SER ==> SET
data/biojava-live-1.7.1/tests/files/2gox_v315.pdb:3955: SER ==> SET
data/biojava-live-1.7.1/tests/files/2gox_v315.pdb:3956: SER ==> SET
data/biojava-live-1.7.1/tests/files/2gox_v315.pdb:3957: SER ==> SET
data/biojava-live-1.7.1/tests/files/2gox_v315.pdb:3958: SER ==> SET
data/biojava-live-1.7.1/tests/files/2gox_v315.pdb:4035: SER ==> SET
data/biojava-live-1.7.1/tests/files/2gox_v315.pdb:4036: SER ==> SET
data/biojava-live-1.7.1/tests/files/2gox_v315.pdb:4037: SER ==> SET
data/biojava-live-1.7.1/tests/files/2gox_v315.pdb:4038: SER ==> SET
data/biojava-live-1.7.1/tests/files/2gox_v315.pdb:4039: SER ==> SET
data/biojava-live-1.7.1/tests/files/2gox_v315.pdb:4040: SER ==> SET
data/biojava-live-1.7.1/tests/files/2gox_v315.pdb:4135: SER ==> SET
data/biojava-live-1.7.1/tests/files/2gox_v315.pdb:4136: SER ==> SET
data/biojava-live-1.7.1/tests/files/2gox_v315.pdb:4137: SER ==> SET
data/biojava-live-1.7.1/tests/files/2gox_v315.pdb:4138: SER ==> SET
data/biojava-live-1.7.1/tests/files/2gox_v315.pdb:4139: SER ==> SET
data/biojava-live-1.7.1/tests/files/2gox_v315.pdb:4140: SER ==> SET
data/biojava-live-1.7.1/tests/files/2gox_v315.pdb:4206: SER ==> SET
data/biojava-live-1.7.1/tests/files/2gox_v315.pdb:4207: SER ==> SET
data/biojava-live-1.7.1/tests/files/2gox_v315.pdb:4208: SER ==> SET
data/biojava-live-1.7.1/tests/files/2gox_v315.pdb:4209: SER ==> SET
data/biojava-live-1.7.1/tests/files/2gox_v315.pdb:4210: SER ==> SET
data/biojava-live-1.7.1/tests/files/2gox_v315.pdb:4211: SER ==> SET
data/biojava-live-1.7.1/tests/files/2gox_v315.pdb:4619: SER ==> SET
data/biojava-live-1.7.1/tests/files/2gox_v315.pdb:4620: SER ==> SET
data/biojava-live-1.7.1/tests/files/2gox_v315.pdb:4621: SER ==> SET
data/biojava-live-1.7.1/tests/files/2gox_v315.pdb:4622: SER ==> SET
data/biojava-live-1.7.1/tests/files/2gox_v315.pdb:4623: SER ==> SET
data/biojava-live-1.7.1/tests/files/2gox_v315.pdb:4624: SER ==> SET
data/biojava-live-1.7.1/tests/files/2gox_v315.pdb:4729: SER ==> SET
data/biojava-live-1.7.1/tests/files/2gox_v315.pdb:4730: SER ==> SET
data/biojava-live-1.7.1/tests/files/2gox_v315.pdb:4731: SER ==> SET
data/biojava-live-1.7.1/tests/files/2gox_v315.pdb:4732: SER ==> SET
data/biojava-live-1.7.1/tests/files/2gox_v315.pdb:4733: SER ==> SET
data/biojava-live-1.7.1/tests/files/2gox_v315.pdb:4734: SER ==> SET
data/biojava-live-1.7.1/tests/files/2gox_v315.pdb:4754: SER ==> SET
data/biojava-live-1.7.1/tests/files/2gox_v315.pdb:4755: SER ==> SET
data/biojava-live-1.7.1/tests/files/2gox_v315.pdb:4756: SER ==> SET
data/biojava-live-1.7.1/tests/files/2gox_v315.pdb:4757: SER ==> SET
data/biojava-live-1.7.1/tests/files/2gox_v315.pdb:4758: SER ==> SET
data/biojava-live-1.7.1/tests/files/2gox_v315.pdb:4759: SER ==> SET
data/biojava-live-1.7.1/tests/files/2gox_v315.pdb:4898: SER ==> SET
data/biojava-live-1.7.1/tests/files/2gox_v315.pdb:4899: SER ==> SET
data/biojava-live-1.7.1/tests/files/2gox_v315.pdb:4900: SER ==> SET
data/biojava-live-1.7.1/tests/files/2gox_v315.pdb:4901: SER ==> SET
data/biojava-live-1.7.1/tests/files/2gox_v315.pdb:4902: SER ==> SET
data/biojava-live-1.7.1/tests/files/2gox_v315.pdb:4903: SER ==> SET
data/biojava-live-1.7.1/tests/files/2gox_v315.pdb:5274: SER ==> SET
data/biojava-live-1.7.1/tests/files/2gox_v315.pdb:5275: SER ==> SET
data/biojava-live-1.7.1/tests/files/2gox_v315.pdb:5276: SER ==> SET
data/biojava-live-1.7.1/tests/files/2gox_v315.pdb:5277: SER ==> SET
data/biojava-live-1.7.1/tests/files/2gox_v315.pdb:5278: SER ==> SET
data/biojava-live-1.7.1/tests/files/2gox_v315.pdb:5279: SER ==> SET
data/biojava-live-1.7.1/tests/files/2gox_v315.pdb:5555: SER ==> SET
data/biojava-live-1.7.1/tests/files/2gox_v315.pdb:5556: SER ==> SET
data/biojava-live-1.7.1/tests/files/2gox_v315.pdb:5557: SER ==> SET
data/biojava-live-1.7.1/tests/files/2gox_v315.pdb:5558: SER ==> SET
data/biojava-live-1.7.1/tests/files/2gox_v315.pdb:5559: SER ==> SET
data/biojava-live-1.7.1/tests/files/2gox_v315.pdb:5560: SER ==> SET
data/biojava-live-1.7.1/tests/files/2gox_v315.pdb:5926: SER ==> SET
data/biojava-live-1.7.1/tests/files/2gox_v315.pdb:5927: SER ==> SET
data/biojava-live-1.7.1/tests/files/2gox_v315.pdb:5928: SER ==> SET
data/biojava-live-1.7.1/tests/files/2gox_v315.pdb:5929: SER ==> SET
data/biojava-live-1.7.1/tests/files/2gox_v315.pdb:5930: SER ==> SET
data/biojava-live-1.7.1/tests/files/2gox_v315.pdb:5931: SER ==> SET
data/biojava-live-1.7.1/tests/files/2gox_v315.pdb:6025: SER ==> SET
data/biojava-live-1.7.1/tests/files/2gox_v315.pdb:6026: SER ==> SET
data/biojava-live-1.7.1/tests/files/2gox_v315.pdb:6027: SER ==> SET
data/biojava-live-1.7.1/tests/files/2gox_v315.pdb:6028: SER ==> SET
data/biojava-live-1.7.1/tests/files/2gox_v315.pdb:6029: SER ==> SET
data/biojava-live-1.7.1/tests/files/2gox_v315.pdb:6030: SER ==> SET
data/biojava-live-1.7.1/tests/files/2gox_v315.pdb:6539: CONECT ==> CONNECT
data/biojava-live-1.7.1/tests/files/2gox_v315.pdb:6540: CONECT ==> CONNECT
data/biojava-live-1.7.1/tests/files/2gox_v315.pdb:6541: CONECT ==> CONNECT
data/biojava-live-1.7.1/tests/files/2gox_v315.pdb:6542: CONECT ==> CONNECT
data/biojava-live-1.7.1/tests/files/388d_v30.pdb:959: CONECT ==> CONNECT
data/biojava-live-1.7.1/tests/files/388d_v30.pdb:960: CONECT ==> CONNECT
data/biojava-live-1.7.1/tests/files/388d_v30.pdb:961: CONECT ==> CONNECT
data/biojava-live-1.7.1/tests/files/388d_v30.pdb:962: CONECT ==> CONNECT
data/biojava-live-1.7.1/tests/files/388d_v30.pdb:963: CONECT ==> CONNECT
data/biojava-live-1.7.1/tests/files/388d_v30.pdb:964: CONECT ==> CONNECT
data/biojava-live-1.7.1/tests/files/388d_v30.pdb:965: CONECT ==> CONNECT
data/biojava-live-1.7.1/tests/files/388d_v30.pdb:966: CONECT ==> CONNECT
data/biojava-live-1.7.1/tests/files/388d_v30.pdb:967: CONECT ==> CONNECT
data/biojava-live-1.7.1/tests/files/388d_v30.pdb:968: CONECT ==> CONNECT
data/biojava-live-1.7.1/tests/files/388d_v30.pdb:969: CONECT ==> CONNECT
data/biojava-live-1.7.1/tests/files/388d_v30.pdb:970: CONECT ==> CONNECT
data/biojava-live-1.7.1/tests/files/388d_v30.pdb:971: CONECT ==> CONNECT
data/biojava-live-1.7.1/tests/files/388d_v30.pdb:972: CONECT ==> CONNECT
data/biojava-live-1.7.1/tests/files/388d_v30.pdb:973: CONECT ==> CONNECT
data/biojava-live-1.7.1/tests/files/388d_v30.pdb:974: CONECT ==> CONNECT
data/biojava-live-1.7.1/tests/files/388d_v30.pdb:975: CONECT ==> CONNECT
data/biojava-live-1.7.1/tests/files/388d_v30.pdb:976: CONECT ==> CONNECT
data/biojava-live-1.7.1/tests/files/388d_v30.pdb:977: CONECT ==> CONNECT
data/biojava-live-1.7.1/tests/files/388d_v30.pdb:978: CONECT ==> CONNECT
data/biojava-live-1.7.1/tests/files/388d_v30.pdb:979: CONECT ==> CONNECT
data/biojava-live-1.7.1/tests/files/388d_v30.pdb:980: CONECT ==> CONNECT
data/biojava-live-1.7.1/tests/files/388d_v30.pdb:981: CONECT ==> CONNECT
data/biojava-live-1.7.1/tests/files/388d_v30.pdb:982: CONECT ==> CONNECT
data/biojava-live-1.7.1/tests/files/388d_v30.pdb:983: CONECT ==> CONNECT
data/biojava-live-1.7.1/tests/files/388d_v30.pdb:984: CONECT ==> CONNECT
data/biojava-live-1.7.1/tests/files/388d_v30.pdb:985: CONECT ==> CONNECT
data/biojava-live-1.7.1/tests/files/388d_v30.pdb:986: CONECT ==> CONNECT
data/biojava-live-1.7.1/tests/files/388d_v30.pdb:987: CONECT ==> CONNECT
data/biojava-live-1.7.1/tests/files/388d_v30.pdb:988: CONECT ==> CONNECT
data/biojava-live-1.7.1/tests/files/388d_v30.pdb:989: CONECT ==> CONNECT
data/biojava-live-1.7.1/tests/files/388d_v30.pdb:990: CONECT ==> CONNECT
data/biojava-live-1.7.1/tests/files/388d_v30.pdb:991: CONECT ==> CONNECT
data/biojava-live-1.7.1/tests/files/388d_v30.pdb:992: CONECT ==> CONNECT
data/biojava-live-1.7.1/tests/files/388d_v30.pdb:993: CONECT ==> CONNECT
data/biojava-live-1.7.1/tests/files/388d_v30.pdb:994: CONECT ==> CONNECT
data/biojava-live-1.7.1/tests/files/388d_v30.pdb:995: CONECT ==> CONNECT
data/biojava-live-1.7.1/tests/files/388d_v30.pdb:996: CONECT ==> CONNECT
data/biojava-live-1.7.1/tests/files/388d_v30.pdb:997: CONECT ==> CONNECT
data/biojava-live-1.7.1/tests/files/388d_v30.pdb:998: CONECT ==> CONNECT
data/biojava-live-1.7.1/tests/files/388d_v30.pdb:999: CONECT ==> CONNECT
data/biojava-live-1.7.1/tests/files/388d_v30.pdb:1000: CONECT ==> CONNECT
data/biojava-live-1.7.1/tests/files/388d_v30.pdb:1001: CONECT ==> CONNECT
data/biojava-live-1.7.1/tests/files/388d_v30.pdb:1002: CONECT ==> CONNECT
data/biojava-live-1.7.1/tests/files/388d_v30.pdb:1003: CONECT ==> CONNECT
data/biojava-live-1.7.1/tests/files/388d_v30.pdb:1004: CONECT ==> CONNECT
data/biojava-live-1.7.1/tests/files/388d_v30.pdb:1005: CONECT ==> CONNECT
data/biojava-live-1.7.1/tests/files/388d_v30.pdb:1006: CONECT ==> CONNECT
data/biojava-live-1.7.1/tests/files/388d_v30.pdb:1007: CONECT ==> CONNECT
data/biojava-live-1.7.1/tests/files/388d_v30.pdb:1008: CONECT ==> CONNECT
data/biojava-live-1.7.1/tests/files/388d_v30.pdb:1009: CONECT ==> CONNECT
data/biojava-live-1.7.1/tests/files/388d_v30.pdb:1010: CONECT ==> CONNECT
data/biojava-live-1.7.1/tests/files/388d_v30.pdb:1011: CONECT ==> CONNECT
data/biojava-live-1.7.1/tests/files/388d_v30.pdb:1012: CONECT ==> CONNECT
data/biojava-live-1.7.1/tests/files/388d_v30.pdb:1013: CONECT ==> CONNECT
data/biojava-live-1.7.1/tests/files/388d_v30.pdb:1014: CONECT ==> CONNECT
data/biojava-live-1.7.1/tests/files/388d_v30.pdb:1015: CONECT ==> CONNECT
data/biojava-live-1.7.1/tests/files/388d_v30.pdb:1016: CONECT ==> CONNECT
data/biojava-live-1.7.1/tests/files/388d_v30.pdb:1017: CONECT ==> CONNECT
data/biojava-live-1.7.1/tests/files/388d_v30.pdb:1018: CONECT ==> CONNECT
data/biojava-live-1.7.1/tests/files/388d_v30.pdb:1019: CONECT ==> CONNECT
data/biojava-live-1.7.1/tests/files/388d_v30.pdb:1020: CONECT ==> CONNECT
data/biojava-live-1.7.1/tests/files/388d_v30.pdb:1021: CONECT ==> CONNECT
data/biojava-live-1.7.1/tests/files/388d_v30.pdb:1022: CONECT ==> CONNECT
data/biojava-live-1.7.1/tests/files/388d_v30.pdb:1023: CONECT ==> CONNECT
data/biojava-live-1.7.1/tests/files/388d_v30.pdb:1024: CONECT ==> CONNECT
data/biojava-live-1.7.1/tests/files/388d_v30.pdb:1025: CONECT ==> CONNECT
data/biojava-live-1.7.1/tests/files/388d_v30.pdb:1026: CONECT ==> CONNECT
data/biojava-live-1.7.1/tests/files/388d_v30.pdb:1027: CONECT ==> CONNECT
data/biojava-live-1.7.1/tests/files/388d_v30.pdb:1028: CONECT ==> CONNECT
data/biojava-live-1.7.1/tests/files/388d_v30.pdb:1029: CONECT ==> CONNECT
data/biojava-live-1.7.1/tests/files/388d_v30.pdb:1030: CONECT ==> CONNECT
data/biojava-live-1.7.1/tests/files/388d_v30.pdb:1031: CONECT ==> CONNECT
data/biojava-live-1.7.1/tests/files/388d_v30.pdb:1032: CONECT ==> CONNECT
data/biojava-live-1.7.1/tests/files/388d_v30.pdb:1033: CONECT ==> CONNECT
data/biojava-live-1.7.1/tests/files/388d_v30.pdb:1034: CONECT ==> CONNECT
data/biojava-live-1.7.1/tests/files/388d_v30.pdb:1035: CONECT ==> CONNECT
data/biojava-live-1.7.1/tests/files/388d_v30.pdb:1036: CONECT ==> CONNECT
data/biojava-live-1.7.1/tests/files/388d_v30.pdb:1037: CONECT ==> CONNECT
data/biojava-live-1.7.1/tests/files/388d_v30.pdb:1038: CONECT ==> CONNECT
data/biojava-live-1.7.1/tests/files/388d_v30.pdb:1039: CONECT ==> CONNECT
data/biojava-live-1.7.1/tests/files/388d_v30.pdb:1040: CONECT ==> CONNECT
data/biojava-live-1.7.1/tests/files/388d_v30.pdb:1041: CONECT ==> CONNECT
data/biojava-live-1.7.1/tests/files/388d_v30.pdb:1042: CONECT ==> CONNECT
data/biojava-live-1.7.1/tests/files/388d_v30.pdb:1043: CONECT ==> CONNECT
data/biojava-live-1.7.1/tests/files/388d_v30.pdb:1044: CONECT ==> CONNECT
data/biojava-live-1.7.1/tests/files/388d_v30.pdb:1045: CONECT ==> CONNECT
data/biojava-live-1.7.1/tests/files/388d_v30.pdb:1046: CONECT ==> CONNECT
data/biojava-live-1.7.1/tests/files/388d_v30.pdb:1047: CONECT ==> CONNECT
data/biojava-live-1.7.1/tests/files/388d_v30.pdb:1048: CONECT ==> CONNECT
data/biojava-live-1.7.1/tests/files/388d_v30.pdb:1049: CONECT ==> CONNECT
data/biojava-live-1.7.1/tests/files/388d_v30.pdb:1050: CONECT ==> CONNECT
data/biojava-live-1.7.1/tests/files/5pti_old.pdb:282: SER ==> SET
data/biojava-live-1.7.1/tests/files/5pti_old.pdb:295: SER ==> SET
data/biojava-live-1.7.1/tests/files/5pti_old.pdb:1062: SER ==> SET
data/biojava-live-1.7.1/tests/files/5pti_old.pdb:1063: SER ==> SET
data/biojava-live-1.7.1/tests/files/5pti_old.pdb:1064: SER ==> SET
data/biojava-live-1.7.1/tests/files/5pti_old.pdb:1065: SER ==> SET
data/biojava-live-1.7.1/tests/files/5pti_old.pdb:1066: SER ==> SET
data/biojava-live-1.7.1/tests/files/5pti_old.pdb:1067: SER ==> SET
data/biojava-live-1.7.1/tests/files/5pti_old.pdb:1068: SER ==> SET
data/biojava-live-1.7.1/tests/files/5pti_old.pdb:1069: SER ==> SET
data/biojava-live-1.7.1/tests/files/5pti_old.pdb:1070: SER ==> SET
data/biojava-live-1.7.1/tests/files/5pti_old.pdb:1071: SER ==> SET
data/biojava-live-1.7.1/tests/files/5pti_old.pdb:1072: SER ==> SET
data/biojava-live-1.7.1/tests/files/5pti_old.pdb:1414: CONECT ==> CONNECT
data/biojava-live-1.7.1/tests/files/5pti_old.pdb:1415: CONECT ==> CONNECT
data/biojava-live-1.7.1/tests/files/5pti_old.pdb:1416: CONECT ==> CONNECT
data/biojava-live-1.7.1/tests/files/5pti_old.pdb:1417: CONECT ==> CONNECT
data/biojava-live-1.7.1/tests/files/5pti_old.pdb:1418: CONECT ==> CONNECT
data/biojava-live-1.7.1/tests/files/5pti_old.pdb:1419: CONECT ==> CONNECT
data/biojava-live-1.7.1/tests/files/5pti_old.pdb:1420: CONECT ==> CONNECT
data/biojava-live-1.7.1/tests/files/5pti_old.pdb:1421: CONECT ==> CONNECT
data/biojava-live-1.7.1/tests/files/5pti_old.pdb:1422: CONECT ==> CONNECT
data/biojava-live-1.7.1/tests/files/5pti_old.pdb:1423: CONECT ==> CONNECT
data/biojava-live-1.7.1/tests/files/5pti_old.pdb:1424: CONECT ==> CONNECT
data/biojava-live-1.7.1/tests/files/BondFeature.gb:31: ND ==> AND, 2ND
data/biojava-live-1.7.1/tests/files/3dl7_v32.pdb:306: SER ==> SET
data/biojava-live-1.7.1/tests/files/3dl7_v32.pdb:348: SER ==> SET
data/biojava-live-1.7.1/tests/files/3dl7_v32.pdb:352: SER ==> SET
data/biojava-live-1.7.1/tests/files/3dl7_v32.pdb:368: SER ==> SET
data/biojava-live-1.7.1/tests/files/3dl7_v32.pdb:420: SER ==> SET
data/biojava-live-1.7.1/tests/files/3dl7_v32.pdb:421: SER ==> SET
data/biojava-live-1.7.1/tests/files/3dl7_v32.pdb:427: SER ==> SET
data/biojava-live-1.7.1/tests/files/3dl7_v32.pdb:428: SER ==> SET
data/biojava-live-1.7.1/tests/files/3dl7_v32.pdb:436: SER ==> SET
data/biojava-live-1.7.1/tests/files/3dl7_v32.pdb:437: SER ==> SET
data/biojava-live-1.7.1/tests/files/3dl7_v32.pdb:438: SER ==> SET
data/biojava-live-1.7.1/tests/files/3dl7_v32.pdb:441: SER ==> SET
data/biojava-live-1.7.1/tests/files/3dl7_v32.pdb:442: SER ==> SET
data/biojava-live-1.7.1/tests/files/3dl7_v32.pdb:443: SER ==> SET
data/biojava-live-1.7.1/tests/files/3dl7_v32.pdb:443: SER ==> SET
data/biojava-live-1.7.1/tests/files/3dl7_v32.pdb:445: SER ==> SET
data/biojava-live-1.7.1/tests/files/3dl7_v32.pdb:446: SER ==> SET
data/biojava-live-1.7.1/tests/files/3dl7_v32.pdb:449: SER ==> SET
data/biojava-live-1.7.1/tests/files/3dl7_v32.pdb:449: SER ==> SET
data/biojava-live-1.7.1/tests/files/3dl7_v32.pdb:450: SER ==> SET
data/biojava-live-1.7.1/tests/files/3dl7_v32.pdb:450: SER ==> SET
data/biojava-live-1.7.1/tests/files/3dl7_v32.pdb:450: SER ==> SET
data/biojava-live-1.7.1/tests/files/3dl7_v32.pdb:451: SER ==> SET
data/biojava-live-1.7.1/tests/files/3dl7_v32.pdb:452: SER ==> SET
data/biojava-live-1.7.1/tests/files/3dl7_v32.pdb:456: SER ==> SET
data/biojava-live-1.7.1/tests/files/3dl7_v32.pdb:456: SER ==> SET
data/biojava-live-1.7.1/tests/files/3dl7_v32.pdb:457: SER ==> SET
data/biojava-live-1.7.1/tests/files/3dl7_v32.pdb:459: SER ==> SET
data/biojava-live-1.7.1/tests/files/3dl7_v32.pdb:460: SER ==> SET
data/biojava-live-1.7.1/tests/files/3dl7_v32.pdb:461: SER ==> SET
data/biojava-live-1.7.1/tests/files/3dl7_v32.pdb:461: SER ==> SET
data/biojava-live-1.7.1/tests/files/3dl7_v32.pdb:462: SER ==> SET
data/biojava-live-1.7.1/tests/files/3dl7_v32.pdb:464: SER ==> SET
data/biojava-live-1.7.1/tests/files/3dl7_v32.pdb:467: SER ==> SET
data/biojava-live-1.7.1/tests/files/3dl7_v32.pdb:469: SER ==> SET
data/biojava-live-1.7.1/tests/files/3dl7_v32.pdb:472: SER ==> SET
data/biojava-live-1.7.1/tests/files/3dl7_v32.pdb:472: SER ==> SET
data/biojava-live-1.7.1/tests/files/3dl7_v32.pdb:473: SER ==> SET
data/biojava-live-1.7.1/tests/files/3dl7_v32.pdb:475: SER ==> SET
data/biojava-live-1.7.1/tests/files/3dl7_v32.pdb:479: SER ==> SET
data/biojava-live-1.7.1/tests/files/3dl7_v32.pdb:480: SER ==> SET
data/biojava-live-1.7.1/tests/files/3dl7_v32.pdb:481: SER ==> SET
data/biojava-live-1.7.1/tests/files/3dl7_v32.pdb:484: SER ==> SET
data/biojava-live-1.7.1/tests/files/3dl7_v32.pdb:485: SER ==> SET
data/biojava-live-1.7.1/tests/files/3dl7_v32.pdb:486: SER ==> SET
data/biojava-live-1.7.1/tests/files/3dl7_v32.pdb:486: SER ==> SET
data/biojava-live-1.7.1/tests/files/3dl7_v32.pdb:488: SER ==> SET
data/biojava-live-1.7.1/tests/files/3dl7_v32.pdb:489: SER ==> SET
data/biojava-live-1.7.1/tests/files/3dl7_v32.pdb:492: SER ==> SET
data/biojava-live-1.7.1/tests/files/3dl7_v32.pdb:492: SER ==> SET
data/biojava-live-1.7.1/tests/files/3dl7_v32.pdb:493: SER ==> SET
data/biojava-live-1.7.1/tests/files/3dl7_v32.pdb:493: SER ==> SET
data/biojava-live-1.7.1/tests/files/3dl7_v32.pdb:493: SER ==> SET
data/biojava-live-1.7.1/tests/files/3dl7_v32.pdb:494: SER ==> SET
data/biojava-live-1.7.1/tests/files/3dl7_v32.pdb:495: SER ==> SET
data/biojava-live-1.7.1/tests/files/3dl7_v32.pdb:499: SER ==> SET
data/biojava-live-1.7.1/tests/files/3dl7_v32.pdb:499: SER ==> SET
data/biojava-live-1.7.1/tests/files/3dl7_v32.pdb:500: SER ==> SET
data/biojava-live-1.7.1/tests/files/3dl7_v32.pdb:502: SER ==> SET
data/biojava-live-1.7.1/tests/files/3dl7_v32.pdb:503: SER ==> SET
data/biojava-live-1.7.1/tests/files/3dl7_v32.pdb:504: SER ==> SET
data/biojava-live-1.7.1/tests/files/3dl7_v32.pdb:504: SER ==> SET
data/biojava-live-1.7.1/tests/files/3dl7_v32.pdb:505: SER ==> SET
data/biojava-live-1.7.1/tests/files/3dl7_v32.pdb:507: SER ==> SET
data/biojava-live-1.7.1/tests/files/3dl7_v32.pdb:510: SER ==> SET
data/biojava-live-1.7.1/tests/files/3dl7_v32.pdb:512: SER ==> SET
data/biojava-live-1.7.1/tests/files/3dl7_v32.pdb:515: SER ==> SET
data/biojava-live-1.7.1/tests/files/3dl7_v32.pdb:515: SER ==> SET
data/biojava-live-1.7.1/tests/files/3dl7_v32.pdb:516: SER ==> SET
data/biojava-live-1.7.1/tests/files/3dl7_v32.pdb:518: SER ==> SET
data/biojava-live-1.7.1/tests/files/3dl7_v32.pdb:521: SER ==> SET
data/biojava-live-1.7.1/tests/files/3dl7_v32.pdb:522: SER ==> SET
data/biojava-live-1.7.1/tests/files/3dl7_v32.pdb:523: SER ==> SET
data/biojava-live-1.7.1/tests/files/3dl7_v32.pdb:524: SER ==> SET
data/biojava-live-1.7.1/tests/files/3dl7_v32.pdb:558: SER ==> SET
data/biojava-live-1.7.1/tests/files/3dl7_v32.pdb:558: SER ==> SET
data/biojava-live-1.7.1/tests/files/3dl7_v32.pdb:558: SER ==> SET
data/biojava-live-1.7.1/tests/files/3dl7_v32.pdb:558: SER ==> SET
data/biojava-live-1.7.1/tests/files/3dl7_v32.pdb:565: SER ==> SET
data/biojava-live-1.7.1/tests/files/3dl7_v32.pdb:565: SER ==> SET
data/biojava-live-1.7.1/tests/files/3dl7_v32.pdb:566: SER ==> SET
data/biojava-live-1.7.1/tests/files/3dl7_v32.pdb:566: SER ==> SET
data/biojava-live-1.7.1/tests/files/3dl7_v32.pdb:583: SER ==> SET
data/biojava-live-1.7.1/tests/files/3dl7_v32.pdb:583: SER ==> SET
data/biojava-live-1.7.1/tests/files/3dl7_v32.pdb:583: SER ==> SET
data/biojava-live-1.7.1/tests/files/3dl7_v32.pdb:583: SER ==> SET
data/biojava-live-1.7.1/tests/files/3dl7_v32.pdb:590: SER ==> SET
data/biojava-live-1.7.1/tests/files/3dl7_v32.pdb:590: SER ==> SET
data/biojava-live-1.7.1/tests/files/3dl7_v32.pdb:591: SER ==> SET
data/biojava-live-1.7.1/tests/files/3dl7_v32.pdb:591: SER ==> SET
data/biojava-live-1.7.1/tests/files/3dl7_v32.pdb:599: SER ==> SET
data/biojava-live-1.7.1/tests/files/3dl7_v32.pdb:599: SER ==> SET
data/biojava-live-1.7.1/tests/files/3dl7_v32.pdb:606: SER ==> SET
data/biojava-live-1.7.1/tests/files/3dl7_v32.pdb:608: SER ==> SET
data/biojava-live-1.7.1/tests/files/3dl7_v32.pdb:615: SER ==> SET
data/biojava-live-1.7.1/tests/files/3dl7_v32.pdb:615: SER ==> SET
data/biojava-live-1.7.1/tests/files/3dl7_v32.pdb:615: SER ==> SET
data/biojava-live-1.7.1/tests/files/3dl7_v32.pdb:616: SER ==> SET
data/biojava-live-1.7.1/tests/files/3dl7_v32.pdb:616: SER ==> SET
data/biojava-live-1.7.1/tests/files/3dl7_v32.pdb:624: SER ==> SET
data/biojava-live-1.7.1/tests/files/3dl7_v32.pdb:626: SER ==> SET
data/biojava-live-1.7.1/tests/files/3dl7_v32.pdb:633: SER ==> SET
data/biojava-live-1.7.1/tests/files/3dl7_v32.pdb:633: SER ==> SET
data/biojava-live-1.7.1/tests/files/3dl7_v32.pdb:633: SER ==> SET
data/biojava-live-1.7.1/tests/files/3dl7_v32.pdb:634: SER ==> SET
data/biojava-live-1.7.1/tests/files/3dl7_v32.pdb:634: SER ==> SET
data/biojava-live-1.7.1/tests/files/3dl7_v32.pdb:659: SER ==> SET
data/biojava-live-1.7.1/tests/files/3dl7_v32.pdb:890: SER ==> SET
data/biojava-live-1.7.1/tests/files/3dl7_v32.pdb:891: SER ==> SET
data/biojava-live-1.7.1/tests/files/3dl7_v32.pdb:892: SER ==> SET
data/biojava-live-1.7.1/tests/files/3dl7_v32.pdb:893: SER ==> SET
data/biojava-live-1.7.1/tests/files/3dl7_v32.pdb:894: SER ==> SET
data/biojava-live-1.7.1/tests/files/3dl7_v32.pdb:895: SER ==> SET
data/biojava-live-1.7.1/tests/files/3dl7_v32.pdb:989: SER ==> SET
data/biojava-live-1.7.1/tests/files/3dl7_v32.pdb:990: SER ==> SET
data/biojava-live-1.7.1/tests/files/3dl7_v32.pdb:991: SER ==> SET
data/biojava-live-1.7.1/tests/files/3dl7_v32.pdb:992: SER ==> SET
data/biojava-live-1.7.1/tests/files/3dl7_v32.pdb:993: SER ==> SET
data/biojava-live-1.7.1/tests/files/3dl7_v32.pdb:994: SER ==> SET
data/biojava-live-1.7.1/tests/files/3dl7_v32.pdb:1107: SER ==> SET
data/biojava-live-1.7.1/tests/files/3dl7_v32.pdb:1108: SER ==> SET
data/biojava-live-1.7.1/tests/files/3dl7_v32.pdb:1109: SER ==> SET
data/biojava-live-1.7.1/tests/files/3dl7_v32.pdb:1110: SER ==> SET
data/biojava-live-1.7.1/tests/files/3dl7_v32.pdb:1111: SER ==> SET
data/biojava-live-1.7.1/tests/files/3dl7_v32.pdb:1112: SER ==> SET
data/biojava-live-1.7.1/tests/files/3dl7_v32.pdb:1399: SER ==> SET
data/biojava-live-1.7.1/tests/files/3dl7_v32.pdb:1400: SER ==> SET
data/biojava-live-1.7.1/tests/files/3dl7_v32.pdb:1401: SER ==> SET
data/biojava-live-1.7.1/tests/files/3dl7_v32.pdb:1402: SER ==> SET
data/biojava-live-1.7.1/tests/files/3dl7_v32.pdb:1403: SER ==> SET
data/biojava-live-1.7.1/tests/files/3dl7_v32.pdb:1404: SER ==> SET
data/biojava-live-1.7.1/tests/files/3dl7_v32.pdb:1541: SER ==> SET
data/biojava-live-1.7.1/tests/files/3dl7_v32.pdb:1542: SER ==> SET
data/biojava-live-1.7.1/tests/files/3dl7_v32.pdb:1543: SER ==> SET
data/biojava-live-1.7.1/tests/files/3dl7_v32.pdb:1544: SER ==> SET
data/biojava-live-1.7.1/tests/files/3dl7_v32.pdb:1545: SER ==> SET
data/biojava-live-1.7.1/tests/files/3dl7_v32.pdb:1546: SER ==> SET
data/biojava-live-1.7.1/tests/files/3dl7_v32.pdb:1660: SER ==> SET
data/biojava-live-1.7.1/tests/files/3dl7_v32.pdb:1661: SER ==> SET
data/biojava-live-1.7.1/tests/files/3dl7_v32.pdb:1662: SER ==> SET
data/biojava-live-1.7.1/tests/files/3dl7_v32.pdb:1663: SER ==> SET
data/biojava-live-1.7.1/tests/files/3dl7_v32.pdb:1664: SER ==> SET
data/biojava-live-1.7.1/tests/files/3dl7_v32.pdb:1665: SER ==> SET
data/biojava-live-1.7.1/tests/files/3dl7_v32.pdb:1680: SER ==> SET
data/biojava-live-1.7.1/tests/files/3dl7_v32.pdb:1681: SER ==> SET
data/biojava-live-1.7.1/tests/files/3dl7_v32.pdb:1682: SER ==> SET
data/biojava-live-1.7.1/tests/files/3dl7_v32.pdb:1683: SER ==> SET
data/biojava-live-1.7.1/tests/files/3dl7_v32.pdb:1684: SER ==> SET
data/biojava-live-1.7.1/tests/files/3dl7_v32.pdb:1685: SER ==> SET
data/biojava-live-1.7.1/tests/files/3dl7_v32.pdb:1824: SER ==> SET
data/biojava-live-1.7.1/tests/files/3dl7_v32.pdb:1825: SER ==> SET
data/biojava-live-1.7.1/tests/files/3dl7_v32.pdb:1826: SER ==> SET
data/biojava-live-1.7.1/tests/files/3dl7_v32.pdb:1827: SER ==> SET
data/biojava-live-1.7.1/tests/files/3dl7_v32.pdb:1828: SER ==> SET
data/biojava-live-1.7.1/tests/files/3dl7_v32.pdb:1829: SER ==> SET
data/biojava-live-1.7.1/tests/files/3dl7_v32.pdb:1945: SER ==> SET
data/biojava-live-1.7.1/tests/files/3dl7_v32.pdb:1946: SER ==> SET
data/biojava-live-1.7.1/tests/files/3dl7_v32.pdb:1947: SER ==> SET
data/biojava-live-1.7.1/tests/files/3dl7_v32.pdb:1948: SER ==> SET
data/biojava-live-1.7.1/tests/files/3dl7_v32.pdb:1949: SER ==> SET
data/biojava-live-1.7.1/tests/files/3dl7_v32.pdb:1950: SER ==> SET
data/biojava-live-1.7.1/tests/files/3dl7_v32.pdb:2187: SER ==> SET
data/biojava-live-1.7.1/tests/files/3dl7_v32.pdb:2188: SER ==> SET
data/biojava-live-1.7.1/tests/files/3dl7_v32.pdb:2189: SER ==> SET
data/biojava-live-1.7.1/tests/files/3dl7_v32.pdb:2190: SER ==> SET
data/biojava-live-1.7.1/tests/files/3dl7_v32.pdb:2191: SER ==> SET
data/biojava-live-1.7.1/tests/files/3dl7_v32.pdb:2192: SER ==> SET
data/biojava-live-1.7.1/tests/files/3dl7_v32.pdb:2284: SER ==> SET
data/biojava-live-1.7.1/tests/files/3dl7_v32.pdb:2285: SER ==> SET
data/biojava-live-1.7.1/tests/files/3dl7_v32.pdb:2286: SER ==> SET
data/biojava-live-1.7.1/tests/files/3dl7_v32.pdb:2287: SER ==> SET
data/biojava-live-1.7.1/tests/files/3dl7_v32.pdb:2288: SER ==> SET
data/biojava-live-1.7.1/tests/files/3dl7_v32.pdb:2289: SER ==> SET
data/biojava-live-1.7.1/tests/files/3dl7_v32.pdb:2335: SER ==> SET
data/biojava-live-1.7.1/tests/files/3dl7_v32.pdb:2336: SER ==> SET
data/biojava-live-1.7.1/tests/files/3dl7_v32.pdb:2337: SER ==> SET
data/biojava-live-1.7.1/tests/files/3dl7_v32.pdb:2338: SER ==> SET
data/biojava-live-1.7.1/tests/files/3dl7_v32.pdb:2339: SER ==> SET
data/biojava-live-1.7.1/tests/files/3dl7_v32.pdb:2340: SER ==> SET
data/biojava-live-1.7.1/tests/files/3dl7_v32.pdb:2356: SER ==> SET
data/biojava-live-1.7.1/tests/files/3dl7_v32.pdb:2357: SER ==> SET
data/biojava-live-1.7.1/tests/files/3dl7_v32.pdb:2358: SER ==> SET
data/biojava-live-1.7.1/tests/files/3dl7_v32.pdb:2359: SER ==> SET
data/biojava-live-1.7.1/tests/files/3dl7_v32.pdb:2360: SER ==> SET
data/biojava-live-1.7.1/tests/files/3dl7_v32.pdb:2361: SER ==> SET
data/biojava-live-1.7.1/tests/files/3dl7_v32.pdb:2373: SER ==> SET
data/biojava-live-1.7.1/tests/files/3dl7_v32.pdb:2374: SER ==> SET
data/biojava-live-1.7.1/tests/files/3dl7_v32.pdb:2375: SER ==> SET
data/biojava-live-1.7.1/tests/files/3dl7_v32.pdb:2376: SER ==> SET
data/biojava-live-1.7.1/tests/files/3dl7_v32.pdb:2377: SER ==> SET
data/biojava-live-1.7.1/tests/files/3dl7_v32.pdb:2378: SER ==> SET
data/biojava-live-1.7.1/tests/files/3dl7_v32.pdb:2448: SER ==> SET
data/biojava-live-1.7.1/tests/files/3dl7_v32.pdb:2449: SER ==> SET
data/biojava-live-1.7.1/tests/files/3dl7_v32.pdb:2450: SER ==> SET
data/biojava-live-1.7.1/tests/files/3dl7_v32.pdb:2451: SER ==> SET
data/biojava-live-1.7.1/tests/files/3dl7_v32.pdb:2452: SER ==> SET
data/biojava-live-1.7.1/tests/files/3dl7_v32.pdb:2453: SER ==> SET
data/biojava-live-1.7.1/tests/files/3dl7_v32.pdb:2524: SER ==> SET
data/biojava-live-1.7.1/tests/files/3dl7_v32.pdb:2525: SER ==> SET
data/biojava-live-1.7.1/tests/files/3dl7_v32.pdb:2526: SER ==> SET
data/biojava-live-1.7.1/tests/files/3dl7_v32.pdb:2527: SER ==> SET
data/biojava-live-1.7.1/tests/files/3dl7_v32.pdb:2528: SER ==> SET
data/biojava-live-1.7.1/tests/files/3dl7_v32.pdb:2529: SER ==> SET
data/biojava-live-1.7.1/tests/files/3dl7_v32.pdb:2893: SER ==> SET
data/biojava-live-1.7.1/tests/files/3dl7_v32.pdb:2894: SER ==> SET
data/biojava-live-1.7.1/tests/files/3dl7_v32.pdb:2895: SER ==> SET
data/biojava-live-1.7.1/tests/files/3dl7_v32.pdb:2896: SER ==> SET
data/biojava-live-1.7.1/tests/files/3dl7_v32.pdb:2897: SER ==> SET
data/biojava-live-1.7.1/tests/files/3dl7_v32.pdb:2898: SER ==> SET
data/biojava-live-1.7.1/tests/files/3dl7_v32.pdb:2940: SER ==> SET
data/biojava-live-1.7.1/tests/files/3dl7_v32.pdb:2941: SER ==> SET
data/biojava-live-1.7.1/tests/files/3dl7_v32.pdb:2942: SER ==> SET
data/biojava-live-1.7.1/tests/files/3dl7_v32.pdb:2943: SER ==> SET
data/biojava-live-1.7.1/tests/files/3dl7_v32.pdb:2944: SER ==> SET
data/biojava-live-1.7.1/tests/files/3dl7_v32.pdb:2945: SER ==> SET
data/biojava-live-1.7.1/tests/files/3dl7_v32.pdb:3024: SER ==> SET
data/biojava-live-1.7.1/tests/files/3dl7_v32.pdb:3025: SER ==> SET
data/biojava-live-1.7.1/tests/files/3dl7_v32.pdb:3026: SER ==> SET
data/biojava-live-1.7.1/tests/files/3dl7_v32.pdb:3027: SER ==> SET
data/biojava-live-1.7.1/tests/files/3dl7_v32.pdb:3028: SER ==> SET
data/biojava-live-1.7.1/tests/files/3dl7_v32.pdb:3029: SER ==> SET
data/biojava-live-1.7.1/tests/files/3dl7_v32.pdb:3224: SER ==> SET
data/biojava-live-1.7.1/tests/files/3dl7_v32.pdb:3225: SER ==> SET
data/biojava-live-1.7.1/tests/files/3dl7_v32.pdb:3226: SER ==> SET
data/biojava-live-1.7.1/tests/files/3dl7_v32.pdb:3227: SER ==> SET
data/biojava-live-1.7.1/tests/files/3dl7_v32.pdb:3228: SER ==> SET
data/biojava-live-1.7.1/tests/files/3dl7_v32.pdb:3229: SER ==> SET
data/biojava-live-1.7.1/tests/files/3dl7_v32.pdb:3313: SER ==> SET
data/biojava-live-1.7.1/tests/files/3dl7_v32.pdb:3314: SER ==> SET
data/biojava-live-1.7.1/tests/files/3dl7_v32.pdb:3315: SER ==> SET
data/biojava-live-1.7.1/tests/files/3dl7_v32.pdb:3316: SER ==> SET
data/biojava-live-1.7.1/tests/files/3dl7_v32.pdb:3317: SER ==> SET
data/biojava-live-1.7.1/tests/files/3dl7_v32.pdb:3318: SER ==> SET
data/biojava-live-1.7.1/tests/files/3dl7_v32.pdb:3353: SER ==> SET
data/biojava-live-1.7.1/tests/files/3dl7_v32.pdb:3354: SER ==> SET
data/biojava-live-1.7.1/tests/files/3dl7_v32.pdb:3355: SER ==> SET
data/biojava-live-1.7.1/tests/files/3dl7_v32.pdb:3356: SER ==> SET
data/biojava-live-1.7.1/tests/files/3dl7_v32.pdb:3357: SER ==> SET
data/biojava-live-1.7.1/tests/files/3dl7_v32.pdb:3358: SER ==> SET
data/biojava-live-1.7.1/tests/files/3dl7_v32.pdb:3375: SER ==> SET
data/biojava-live-1.7.1/tests/files/3dl7_v32.pdb:3376: SER ==> SET
data/biojava-live-1.7.1/tests/files/3dl7_v32.pdb:3377: SER ==> SET
data/biojava-live-1.7.1/tests/files/3dl7_v32.pdb:3378: SER ==> SET
data/biojava-live-1.7.1/tests/files/3dl7_v32.pdb:3379: SER ==> SET
data/biojava-live-1.7.1/tests/files/3dl7_v32.pdb:3380: SER ==> SET
data/biojava-live-1.7.1/tests/files/3dl7_v32.pdb:3492: SER ==> SET
data/biojava-live-1.7.1/tests/files/3dl7_v32.pdb:3493: SER ==> SET
data/biojava-live-1.7.1/tests/files/3dl7_v32.pdb:3494: SER ==> SET
data/biojava-live-1.7.1/tests/files/3dl7_v32.pdb:3495: SER ==> SET
data/biojava-live-1.7.1/tests/files/3dl7_v32.pdb:3496: SER ==> SET
data/biojava-live-1.7.1/tests/files/3dl7_v32.pdb:3497: SER ==> SET
data/biojava-live-1.7.1/tests/files/3dl7_v32.pdb:3717: SER ==> SET
data/biojava-live-1.7.1/tests/files/3dl7_v32.pdb:3718: SER ==> SET
data/biojava-live-1.7.1/tests/files/3dl7_v32.pdb:3719: SER ==> SET
data/biojava-live-1.7.1/tests/files/3dl7_v32.pdb:3720: SER ==> SET
data/biojava-live-1.7.1/tests/files/3dl7_v32.pdb:3721: SER ==> SET
data/biojava-live-1.7.1/tests/files/3dl7_v32.pdb:3722: SER ==> SET
data/biojava-live-1.7.1/tests/files/3dl7_v32.pdb:3985: SER ==> SET
data/biojava-live-1.7.1/tests/files/3dl7_v32.pdb:3986: SER ==> SET
data/biojava-live-1.7.1/tests/files/3dl7_v32.pdb:3987: SER ==> SET
data/biojava-live-1.7.1/tests/files/3dl7_v32.pdb:3988: SER ==> SET
data/biojava-live-1.7.1/tests/files/3dl7_v32.pdb:3989: SER ==> SET
data/biojava-live-1.7.1/tests/files/3dl7_v32.pdb:3990: SER ==> SET
data/biojava-live-1.7.1/tests/files/3dl7_v32.pdb:4216: SER ==> SET
data/biojava-live-1.7.1/tests/files/3dl7_v32.pdb:4217: SER ==> SET
data/biojava-live-1.7.1/tests/files/3dl7_v32.pdb:4218: SER ==> SET
data/biojava-live-1.7.1/tests/files/3dl7_v32.pdb:4219: SER ==> SET
data/biojava-live-1.7.1/tests/files/3dl7_v32.pdb:4220: SER ==> SET
data/biojava-live-1.7.1/tests/files/3dl7_v32.pdb:4221: SER ==> SET
data/biojava-live-1.7.1/tests/files/3dl7_v32.pdb:4498: SER ==> SET
data/biojava-live-1.7.1/tests/files/3dl7_v32.pdb:4499: SER ==> SET
data/biojava-live-1.7.1/tests/files/3dl7_v32.pdb:4500: SER ==> SET
data/biojava-live-1.7.1/tests/files/3dl7_v32.pdb:4501: SER ==> SET
data/biojava-live-1.7.1/tests/files/3dl7_v32.pdb:4502: SER ==> SET
data/biojava-live-1.7.1/tests/files/3dl7_v32.pdb:4503: SER ==> SET
data/biojava-live-1.7.1/tests/files/3dl7_v32.pdb:4509: SER ==> SET
data/biojava-live-1.7.1/tests/files/3dl7_v32.pdb:4510: SER ==> SET
data/biojava-live-1.7.1/tests/files/3dl7_v32.pdb:4511: SER ==> SET
data/biojava-live-1.7.1/tests/files/3dl7_v32.pdb:4512: SER ==> SET
data/biojava-live-1.7.1/tests/files/3dl7_v32.pdb:4513: SER ==> SET
data/biojava-live-1.7.1/tests/files/3dl7_v32.pdb:4514: SER ==> SET
data/biojava-live-1.7.1/tests/files/3dl7_v32.pdb:4632: SER ==> SET
data/biojava-live-1.7.1/tests/files/3dl7_v32.pdb:4633: SER ==> SET
data/biojava-live-1.7.1/tests/files/3dl7_v32.pdb:4634: SER ==> SET
data/biojava-live-1.7.1/tests/files/3dl7_v32.pdb:4635: SER ==> SET
data/biojava-live-1.7.1/tests/files/3dl7_v32.pdb:4636: SER ==> SET
data/biojava-live-1.7.1/tests/files/3dl7_v32.pdb:4637: SER ==> SET
data/biojava-live-1.7.1/tests/files/3dl7_v32.pdb:4882: SER ==> SET
data/biojava-live-1.7.1/tests/files/3dl7_v32.pdb:4883: SER ==> SET
data/biojava-live-1.7.1/tests/files/3dl7_v32.pdb:4884: SER ==> SET
data/biojava-live-1.7.1/tests/files/3dl7_v32.pdb:4885: SER ==> SET
data/biojava-live-1.7.1/tests/files/3dl7_v32.pdb:4886: SER ==> SET
data/biojava-live-1.7.1/tests/files/3dl7_v32.pdb:4887: SER ==> SET
data/biojava-live-1.7.1/tests/files/3dl7_v32.pdb:5096: SER ==> SET
data/biojava-live-1.7.1/tests/files/3dl7_v32.pdb:5097: SER ==> SET
data/biojava-live-1.7.1/tests/files/3dl7_v32.pdb:5098: SER ==> SET
data/biojava-live-1.7.1/tests/files/3dl7_v32.pdb:5099: SER ==> SET
data/biojava-live-1.7.1/tests/files/3dl7_v32.pdb:5100: SER ==> SET
data/biojava-live-1.7.1/tests/files/3dl7_v32.pdb:5101: SER ==> SET
data/biojava-live-1.7.1/tests/files/3dl7_v32.pdb:5195: SER ==> SET
data/biojava-live-1.7.1/tests/files/3dl7_v32.pdb:5196: SER ==> SET
data/biojava-live-1.7.1/tests/files/3dl7_v32.pdb:5197: SER ==> SET
data/biojava-live-1.7.1/tests/files/3dl7_v32.pdb:5198: SER ==> SET
data/biojava-live-1.7.1/tests/files/3dl7_v32.pdb:5199: SER ==> SET
data/biojava-live-1.7.1/tests/files/3dl7_v32.pdb:5200: SER ==> SET
data/biojava-live-1.7.1/tests/files/3dl7_v32.pdb:5326: SER ==> SET
data/biojava-live-1.7.1/tests/files/3dl7_v32.pdb:5327: SER ==> SET
data/biojava-live-1.7.1/tests/files/3dl7_v32.pdb:5328: SER ==> SET
data/biojava-live-1.7.1/tests/files/3dl7_v32.pdb:5329: SER ==> SET
data/biojava-live-1.7.1/tests/files/3dl7_v32.pdb:5330: SER ==> SET
data/biojava-live-1.7.1/tests/files/3dl7_v32.pdb:5331: SER ==> SET
data/biojava-live-1.7.1/tests/files/3dl7_v32.pdb:5618: SER ==> SET
data/biojava-live-1.7.1/tests/files/3dl7_v32.pdb:5619: SER ==> SET
data/biojava-live-1.7.1/tests/files/3dl7_v32.pdb:5620: SER ==> SET
data/biojava-live-1.7.1/tests/files/3dl7_v32.pdb:5621: SER ==> SET
data/biojava-live-1.7.1/tests/files/3dl7_v32.pdb:5622: SER ==> SET
data/biojava-live-1.7.1/tests/files/3dl7_v32.pdb:5623: SER ==> SET
data/biojava-live-1.7.1/tests/files/3dl7_v32.pdb:5760: SER ==> SET
data/biojava-live-1.7.1/tests/files/3dl7_v32.pdb:5761: SER ==> SET
data/biojava-live-1.7.1/tests/files/3dl7_v32.pdb:5762: SER ==> SET
data/biojava-live-1.7.1/tests/files/3dl7_v32.pdb:5763: SER ==> SET
data/biojava-live-1.7.1/tests/files/3dl7_v32.pdb:5764: SER ==> SET
data/biojava-live-1.7.1/tests/files/3dl7_v32.pdb:5765: SER ==> SET
data/biojava-live-1.7.1/tests/files/3dl7_v32.pdb:5879: SER ==> SET
data/biojava-live-1.7.1/tests/files/3dl7_v32.pdb:5880: SER ==> SET
data/biojava-live-1.7.1/tests/files/3dl7_v32.pdb:5881: SER ==> SET
data/biojava-live-1.7.1/tests/files/3dl7_v32.pdb:5882: SER ==> SET
data/biojava-live-1.7.1/tests/files/3dl7_v32.pdb:5883: SER ==> SET
data/biojava-live-1.7.1/tests/files/3dl7_v32.pdb:5884: SER ==> SET
data/biojava-live-1.7.1/tests/files/3dl7_v32.pdb:5899: SER ==> SET
data/biojava-live-1.7.1/tests/files/3dl7_v32.pdb:5900: SER ==> SET
data/biojava-live-1.7.1/tests/files/3dl7_v32.pdb:5901: SER ==> SET
data/biojava-live-1.7.1/tests/files/3dl7_v32.pdb:5902: SER ==> SET
data/biojava-live-1.7.1/tests/files/3dl7_v32.pdb:5903: SER ==> SET
data/biojava-live-1.7.1/tests/files/3dl7_v32.pdb:5904: SER ==> SET
data/biojava-live-1.7.1/tests/files/3dl7_v32.pdb:6043: SER ==> SET
data/biojava-live-1.7.1/tests/files/3dl7_v32.pdb:6044: SER ==> SET
data/biojava-live-1.7.1/tests/files/3dl7_v32.pdb:6045: SER ==> SET
data/biojava-live-1.7.1/tests/files/3dl7_v32.pdb:6046: SER ==> SET
data/biojava-live-1.7.1/tests/files/3dl7_v32.pdb:6047: SER ==> SET
data/biojava-live-1.7.1/tests/files/3dl7_v32.pdb:6048: SER ==> SET
data/biojava-live-1.7.1/tests/files/3dl7_v32.pdb:6164: SER ==> SET
data/biojava-live-1.7.1/tests/files/3dl7_v32.pdb:6165: SER ==> SET
data/biojava-live-1.7.1/tests/files/3dl7_v32.pdb:6166: SER ==> SET
data/biojava-live-1.7.1/tests/files/3dl7_v32.pdb:6167: SER ==> SET
data/biojava-live-1.7.1/tests/files/3dl7_v32.pdb:6168: SER ==> SET
data/biojava-live-1.7.1/tests/files/3dl7_v32.pdb:6169: SER ==> SET
data/biojava-live-1.7.1/tests/files/3dl7_v32.pdb:6412: SER ==> SET
data/biojava-live-1.7.1/tests/files/3dl7_v32.pdb:6413: SER ==> SET
data/biojava-live-1.7.1/tests/files/3dl7_v32.pdb:6414: SER ==> SET
data/biojava-live-1.7.1/tests/files/3dl7_v32.pdb:6415: SER ==> SET
data/biojava-live-1.7.1/tests/files/3dl7_v32.pdb:6416: SER ==> SET
data/biojava-live-1.7.1/tests/files/3dl7_v32.pdb:6417: SER ==> SET
data/biojava-live-1.7.1/tests/files/3dl7_v32.pdb:6509: SER ==> SET
data/biojava-live-1.7.1/tests/files/3dl7_v32.pdb:6510: SER ==> SET
data/biojava-live-1.7.1/tests/files/3dl7_v32.pdb:6511: SER ==> SET
data/biojava-live-1.7.1/tests/files/3dl7_v32.pdb:6512: SER ==> SET
data/biojava-live-1.7.1/tests/files/3dl7_v32.pdb:6513: SER ==> SET
data/biojava-live-1.7.1/tests/files/3dl7_v32.pdb:6514: SER ==> SET
data/biojava-live-1.7.1/tests/files/3dl7_v32.pdb:6560: SER ==> SET
data/biojava-live-1.7.1/tests/files/3dl7_v32.pdb:6561: SER ==> SET
data/biojava-live-1.7.1/tests/files/3dl7_v32.pdb:6562: SER ==> SET
data/biojava-live-1.7.1/tests/files/3dl7_v32.pdb:6563: SER ==> SET
data/biojava-live-1.7.1/tests/files/3dl7_v32.pdb:6564: SER ==> SET
data/biojava-live-1.7.1/tests/files/3dl7_v32.pdb:6565: SER ==> SET
data/biojava-live-1.7.1/tests/files/3dl7_v32.pdb:6581: SER ==> SET
data/biojava-live-1.7.1/tests/files/3dl7_v32.pdb:6582: SER ==> SET
data/biojava-live-1.7.1/tests/files/3dl7_v32.pdb:6583: SER ==> SET
data/biojava-live-1.7.1/tests/files/3dl7_v32.pdb:6584: SER ==> SET
data/biojava-live-1.7.1/tests/files/3dl7_v32.pdb:6585: SER ==> SET
data/biojava-live-1.7.1/tests/files/3dl7_v32.pdb:6586: SER ==> SET
data/biojava-live-1.7.1/tests/files/3dl7_v32.pdb:6598: SER ==> SET
data/biojava-live-1.7.1/tests/files/3dl7_v32.pdb:6599: SER ==> SET
data/biojava-live-1.7.1/tests/files/3dl7_v32.pdb:6600: SER ==> SET
data/biojava-live-1.7.1/tests/files/3dl7_v32.pdb:6601: SER ==> SET
data/biojava-live-1.7.1/tests/files/3dl7_v32.pdb:6602: SER ==> SET
data/biojava-live-1.7.1/tests/files/3dl7_v32.pdb:6603: SER ==> SET
data/biojava-live-1.7.1/tests/files/3dl7_v32.pdb:6673: SER ==> SET
data/biojava-live-1.7.1/tests/files/3dl7_v32.pdb:6674: SER ==> SET
data/biojava-live-1.7.1/tests/files/3dl7_v32.pdb:6675: SER ==> SET
data/biojava-live-1.7.1/tests/files/3dl7_v32.pdb:6676: SER ==> SET
data/biojava-live-1.7.1/tests/files/3dl7_v32.pdb:6677: SER ==> SET
data/biojava-live-1.7.1/tests/files/3dl7_v32.pdb:6678: SER ==> SET
data/biojava-live-1.7.1/tests/files/3dl7_v32.pdb:6749: SER ==> SET
data/biojava-live-1.7.1/tests/files/3dl7_v32.pdb:6750: SER ==> SET
data/biojava-live-1.7.1/tests/files/3dl7_v32.pdb:6751: SER ==> SET
data/biojava-live-1.7.1/tests/files/3dl7_v32.pdb:6752: SER ==> SET
data/biojava-live-1.7.1/tests/files/3dl7_v32.pdb:6753: SER ==> SET
data/biojava-live-1.7.1/tests/files/3dl7_v32.pdb:6754: SER ==> SET
data/biojava-live-1.7.1/tests/files/3dl7_v32.pdb:7111: SER ==> SET
data/biojava-live-1.7.1/tests/files/3dl7_v32.pdb:7112: SER ==> SET
data/biojava-live-1.7.1/tests/files/3dl7_v32.pdb:7113: SER ==> SET
data/biojava-live-1.7.1/tests/files/3dl7_v32.pdb:7114: SER ==> SET
data/biojava-live-1.7.1/tests/files/3dl7_v32.pdb:7115: SER ==> SET
data/biojava-live-1.7.1/tests/files/3dl7_v32.pdb:7116: SER ==> SET
data/biojava-live-1.7.1/tests/files/3dl7_v32.pdb:7158: SER ==> SET
data/biojava-live-1.7.1/tests/files/3dl7_v32.pdb:7159: SER ==> SET
data/biojava-live-1.7.1/tests/files/3dl7_v32.pdb:7160: SER ==> SET
data/biojava-live-1.7.1/tests/files/3dl7_v32.pdb:7161: SER ==> SET
data/biojava-live-1.7.1/tests/files/3dl7_v32.pdb:7162: SER ==> SET
data/biojava-live-1.7.1/tests/files/3dl7_v32.pdb:7163: SER ==> SET
data/biojava-live-1.7.1/tests/files/3dl7_v32.pdb:7242: SER ==> SET
data/biojava-live-1.7.1/tests/files/3dl7_v32.pdb:7243: SER ==> SET
data/biojava-live-1.7.1/tests/files/3dl7_v32.pdb:7244: SER ==> SET
data/biojava-live-1.7.1/tests/files/3dl7_v32.pdb:7245: SER ==> SET
data/biojava-live-1.7.1/tests/files/3dl7_v32.pdb:7246: SER ==> SET
data/biojava-live-1.7.1/tests/files/3dl7_v32.pdb:7247: SER ==> SET
data/biojava-live-1.7.1/tests/files/3dl7_v32.pdb:7442: SER ==> SET
data/biojava-live-1.7.1/tests/files/3dl7_v32.pdb:7443: SER ==> SET
data/biojava-live-1.7.1/tests/files/3dl7_v32.pdb:7444: SER ==> SET
data/biojava-live-1.7.1/tests/files/3dl7_v32.pdb:7445: SER ==> SET
data/biojava-live-1.7.1/tests/files/3dl7_v32.pdb:7446: SER ==> SET
data/biojava-live-1.7.1/tests/files/3dl7_v32.pdb:7447: SER ==> SET
data/biojava-live-1.7.1/tests/files/3dl7_v32.pdb:7531: SER ==> SET
data/biojava-live-1.7.1/tests/files/3dl7_v32.pdb:7532: SER ==> SET
data/biojava-live-1.7.1/tests/files/3dl7_v32.pdb:7533: SER ==> SET
data/biojava-live-1.7.1/tests/files/3dl7_v32.pdb:7534: SER ==> SET
data/biojava-live-1.7.1/tests/files/3dl7_v32.pdb:7535: SER ==> SET
data/biojava-live-1.7.1/tests/files/3dl7_v32.pdb:7536: SER ==> SET
data/biojava-live-1.7.1/tests/files/3dl7_v32.pdb:7571: SER ==> SET
data/biojava-live-1.7.1/tests/files/3dl7_v32.pdb:7572: SER ==> SET
data/biojava-live-1.7.1/tests/files/3dl7_v32.pdb:7573: SER ==> SET
data/biojava-live-1.7.1/tests/files/3dl7_v32.pdb:7574: SER ==> SET
data/biojava-live-1.7.1/tests/files/3dl7_v32.pdb:7575: SER ==> SET
data/biojava-live-1.7.1/tests/files/3dl7_v32.pdb:7576: SER ==> SET
data/biojava-live-1.7.1/tests/files/3dl7_v32.pdb:7593: SER ==> SET
data/biojava-live-1.7.1/tests/files/3dl7_v32.pdb:7594: SER ==> SET
data/biojava-live-1.7.1/tests/files/3dl7_v32.pdb:7595: SER ==> SET
data/biojava-live-1.7.1/tests/files/3dl7_v32.pdb:7596: SER ==> SET
data/biojava-live-1.7.1/tests/files/3dl7_v32.pdb:7597: SER ==> SET
data/biojava-live-1.7.1/tests/files/3dl7_v32.pdb:7598: SER ==> SET
data/biojava-live-1.7.1/tests/files/3dl7_v32.pdb:7710: SER ==> SET
data/biojava-live-1.7.1/tests/files/3dl7_v32.pdb:7711: SER ==> SET
data/biojava-live-1.7.1/tests/files/3dl7_v32.pdb:7712: SER ==> SET
data/biojava-live-1.7.1/tests/files/3dl7_v32.pdb:7713: SER ==> SET
data/biojava-live-1.7.1/tests/files/3dl7_v32.pdb:7714: SER ==> SET
data/biojava-live-1.7.1/tests/files/3dl7_v32.pdb:7715: SER ==> SET
data/biojava-live-1.7.1/tests/files/3dl7_v32.pdb:7942: SER ==> SET
data/biojava-live-1.7.1/tests/files/3dl7_v32.pdb:7943: SER ==> SET
data/biojava-live-1.7.1/tests/files/3dl7_v32.pdb:7944: SER ==> SET
data/biojava-live-1.7.1/tests/files/3dl7_v32.pdb:7945: SER ==> SET
data/biojava-live-1.7.1/tests/files/3dl7_v32.pdb:7946: SER ==> SET
data/biojava-live-1.7.1/tests/files/3dl7_v32.pdb:7947: SER ==> SET
data/biojava-live-1.7.1/tests/files/3dl7_v32.pdb:8210: SER ==> SET
data/biojava-live-1.7.1/tests/files/3dl7_v32.pdb:8211: SER ==> SET
data/biojava-live-1.7.1/tests/files/3dl7_v32.pdb:8212: SER ==> SET
data/biojava-live-1.7.1/tests/files/3dl7_v32.pdb:8213: SER ==> SET
data/biojava-live-1.7.1/tests/files/3dl7_v32.pdb:8214: SER ==> SET
data/biojava-live-1.7.1/tests/files/3dl7_v32.pdb:8215: SER ==> SET
data/biojava-live-1.7.1/tests/files/3dl7_v32.pdb:8441: SER ==> SET
data/biojava-live-1.7.1/tests/files/3dl7_v32.pdb:8442: SER ==> SET
data/biojava-live-1.7.1/tests/files/3dl7_v32.pdb:8443: SER ==> SET
data/biojava-live-1.7.1/tests/files/3dl7_v32.pdb:8444: SER ==> SET
data/biojava-live-1.7.1/tests/files/3dl7_v32.pdb:8445: SER ==> SET
data/biojava-live-1.7.1/tests/files/3dl7_v32.pdb:8446: SER ==> SET
data/biojava-live-1.7.1/tests/files/3dl7_v32.pdb:8723: SER ==> SET
data/biojava-live-1.7.1/tests/files/3dl7_v32.pdb:8724: SER ==> SET
data/biojava-live-1.7.1/tests/files/3dl7_v32.pdb:8725: SER ==> SET
data/biojava-live-1.7.1/tests/files/3dl7_v32.pdb:8726: SER ==> SET
data/biojava-live-1.7.1/tests/files/3dl7_v32.pdb:8727: SER ==> SET
data/biojava-live-1.7.1/tests/files/3dl7_v32.pdb:8728: SER ==> SET
data/biojava-live-1.7.1/tests/files/3dl7_v32.pdb:8729: SER ==> SET
data/biojava-live-1.7.1/tests/files/3dl7_v32.pdb:8730: SER ==> SET
data/biojava-live-1.7.1/tests/files/3dl7_v32.pdb:8731: SER ==> SET
data/biojava-live-1.7.1/tests/files/3dl7_v32.pdb:8732: SER ==> SET
data/biojava-live-1.7.1/tests/files/3dl7_v32.pdb:8733: SER ==> SET
data/biojava-live-1.7.1/tests/files/3dl7_v32.pdb:8851: SER ==> SET
data/biojava-live-1.7.1/tests/files/3dl7_v32.pdb:8852: SER ==> SET
data/biojava-live-1.7.1/tests/files/3dl7_v32.pdb:8853: SER ==> SET
data/biojava-live-1.7.1/tests/files/3dl7_v32.pdb:8854: SER ==> SET
data/biojava-live-1.7.1/tests/files/3dl7_v32.pdb:8855: SER ==> SET
data/biojava-live-1.7.1/tests/files/3dl7_v32.pdb:8856: SER ==> SET
data/biojava-live-1.7.1/tests/files/3dl7_v32.pdb:9093: SER ==> SET
data/biojava-live-1.7.1/tests/files/3dl7_v32.pdb:9094: SER ==> SET
data/biojava-live-1.7.1/tests/files/3dl7_v32.pdb:9095: SER ==> SET
data/biojava-live-1.7.1/tests/files/3dl7_v32.pdb:9096: SER ==> SET
data/biojava-live-1.7.1/tests/files/3dl7_v32.pdb:9097: SER ==> SET
data/biojava-live-1.7.1/tests/files/3dl7_v32.pdb:9098: SER ==> SET
data/biojava-live-1.7.1/tests/files/3dl7_v32.pdb:9599: CONECT ==> CONNECT
data/biojava-live-1.7.1/tests/files/3dl7_v32.pdb:9600: CONECT ==> CONNECT
data/biojava-live-1.7.1/tests/files/3dl7_v32.pdb:9601: CONECT ==> CONNECT
data/biojava-live-1.7.1/tests/files/3dl7_v32.pdb:9602: CONECT ==> CONNECT
data/biojava-live-1.7.1/tests/files/3dl7_v32.pdb:9603: CONECT ==> CONNECT
data/biojava-live-1.7.1/tests/files/3dl7_v32.pdb:9604: CONECT ==> CONNECT
data/biojava-live-1.7.1/tests/files/3dl7_v32.pdb:9605: CONECT ==> CONNECT
data/biojava-live-1.7.1/tests/files/3dl7_v32.pdb:9606: CONECT ==> CONNECT
data/biojava-live-1.7.1/tests/files/3dl7_v32.pdb:9607: CONECT ==> CONNECT
data/biojava-live-1.7.1/tests/files/3dl7_v32.pdb:9608: CONECT ==> CONNECT
data/biojava-live-1.7.1/tests/files/3dl7_v32.pdb:9609: CONECT ==> CONNECT
data/biojava-live-1.7.1/tests/files/3dl7_v32.pdb:9610: CONECT ==> CONNECT
data/biojava-live-1.7.1/tests/files/3dl7_v32.pdb:9611: CONECT ==> CONNECT
data/biojava-live-1.7.1/tests/files/3dl7_v32.pdb:9612: CONECT ==> CONNECT
data/biojava-live-1.7.1/tests/files/3dl7_v32.pdb:9613: CONECT ==> CONNECT
data/biojava-live-1.7.1/tests/files/3dl7_v32.pdb:9614: CONECT ==> CONNECT
data/biojava-live-1.7.1/tests/files/3dl7_v32.pdb:9615: CONECT ==> CONNECT
data/biojava-live-1.7.1/tests/files/3dl7_v32.pdb:9616: CONECT ==> CONNECT
data/biojava-live-1.7.1/tests/files/3dl7_v32.pdb:9617: CONECT ==> CONNECT
data/biojava-live-1.7.1/tests/files/3dl7_v32.pdb:9618: CONECT ==> CONNECT
data/biojava-live-1.7.1/tests/files/3dl7_v32.pdb:9619: CONECT ==> CONNECT
data/biojava-live-1.7.1/tests/files/3dl7_v32.pdb:9620: CONECT ==> CONNECT
data/biojava-live-1.7.1/tests/files/3dl7_v32.pdb:9621: CONECT ==> CONNECT
data/biojava-live-1.7.1/tests/files/3dl7_v32.pdb:9622: CONECT ==> CONNECT
data/biojava-live-1.7.1/tests/files/3dl7_v32.pdb:9623: CONECT ==> CONNECT
data/biojava-live-1.7.1/tests/files/3dl7_v32.pdb:9624: CONECT ==> CONNECT
data/biojava-live-1.7.1/tests/files/3dl7_v32.pdb:9625: CONECT ==> CONNECT
data/biojava-live-1.7.1/tests/files/3dl7_v32.pdb:9626: CONECT ==> CONNECT
data/biojava-live-1.7.1/tests/files/3dl7_v32.pdb:9627: CONECT ==> CONNECT
data/biojava-live-1.7.1/tests/files/3dl7_v32.pdb:9628: CONECT ==> CONNECT
data/biojava-live-1.7.1/tests/files/3dl7_v32.pdb:9629: CONECT ==> CONNECT
data/biojava-live-1.7.1/tests/files/3dl7_v32.pdb:9630: CONECT ==> CONNECT
data/biojava-live-1.7.1/tests/files/3dl7_v32.pdb:9631: CONECT ==> CONNECT
data/biojava-live-1.7.1/tests/files/3dl7_v32.pdb:9632: CONECT ==> CONNECT
data/biojava-live-1.7.1/tests/files/3dl7_v32.pdb:9633: CONECT ==> CONNECT
data/biojava-live-1.7.1/tests/files/3dl7_v32.pdb:9634: CONECT ==> CONNECT
data/biojava-live-1.7.1/tests/files/3dl7_v32.pdb:9635: CONECT ==> CONNECT
data/biojava-live-1.7.1/tests/files/3dl7_v32.pdb:9636: CONECT ==> CONNECT
data/biojava-live-1.7.1/tests/files/3dl7_v32.pdb:9637: CONECT ==> CONNECT
data/biojava-live-1.7.1/tests/files/3dl7_v32.pdb:9638: CONECT ==> CONNECT
data/biojava-live-1.7.1/tests/files/3dl7_v32.pdb:9639: CONECT ==> CONNECT
data/biojava-live-1.7.1/tests/files/3dl7_v32.pdb:9640: CONECT ==> CONNECT
data/biojava-live-1.7.1/tests/files/3dl7_v32.pdb:9641: CONECT ==> CONNECT
data/biojava-live-1.7.1/tests/files/3dl7_v32.pdb:9642: CONECT ==> CONNECT
data/biojava-live-1.7.1/tests/files/3dl7_v32.pdb:9643: CONECT ==> CONNECT
data/biojava-live-1.7.1/tests/files/3dl7_v32.pdb:9644: CONECT ==> CONNECT
data/biojava-live-1.7.1/tests/files/3dl7_v32.pdb:9645: CONECT ==> CONNECT
data/biojava-live-1.7.1/tests/files/3dl7_v32.pdb:9646: CONECT ==> CONNECT
data/biojava-live-1.7.1/tests/files/3dl7_v32.pdb:9647: CONECT ==> CONNECT
data/biojava-live-1.7.1/tests/files/3dl7_v32.pdb:9648: CONECT ==> CONNECT
data/biojava-live-1.7.1/tests/files/3dl7_v32.pdb:9649: CONECT ==> CONNECT
data/biojava-live-1.7.1/tests/files/3dl7_v32.pdb:9650: CONECT ==> CONNECT
data/biojava-live-1.7.1/tests/files/3dl7_v32.pdb:9651: CONECT ==> CONNECT
data/biojava-live-1.7.1/tests/files/3dl7_v32.pdb:9652: CONECT ==> CONNECT
data/biojava-live-1.7.1/tests/files/3dl7_v32.pdb:9653: CONECT ==> CONNECT
data/biojava-live-1.7.1/tests/files/3dl7_v32.pdb:9654: CONECT ==> CONNECT
data/biojava-live-1.7.1/tests/files/3dl7_v32.pdb:9655: CONECT ==> CONNECT
data/biojava-live-1.7.1/tests/files/3dl7_v32.pdb:9656: CONECT ==> CONNECT
data/biojava-live-1.7.1/tests/files/3dl7_v32.pdb:9657: CONECT ==> CONNECT
data/biojava-live-1.7.1/tests/files/3dl7_v32.pdb:9658: CONECT ==> CONNECT
data/biojava-live-1.7.1/tests/files/3dl7_v32.pdb:9659: CONECT ==> CONNECT
data/biojava-live-1.7.1/tests/files/3dl7_v32.pdb:9660: CONECT ==> CONNECT
data/biojava-live-1.7.1/tests/files/3dl7_v32.pdb:9661: CONECT ==> CONNECT
data/biojava-live-1.7.1/tests/files/3dl7_v32.pdb:9662: CONECT ==> CONNECT
data/biojava-live-1.7.1/tests/files/3dl7_v32.pdb:9663: CONECT ==> CONNECT
data/biojava-live-1.7.1/tests/files/3dl7_v32.pdb:9664: CONECT ==> CONNECT
data/biojava-live-1.7.1/tests/files/3dl7_v32.pdb:9665: CONECT ==> CONNECT
data/biojava-live-1.7.1/tests/files/3dl7_v32.pdb:9666: CONECT ==> CONNECT
data/biojava-live-1.7.1/tests/files/3dl7_v32.pdb:9667: CONECT ==> CONNECT
data/biojava-live-1.7.1/tests/files/3dl7_v32.pdb:9668: CONECT ==> CONNECT
data/biojava-live-1.7.1/tests/files/3dl7_v32.pdb:9669: CONECT ==> CONNECT
data/biojava-live-1.7.1/tests/files/3dl7_v32.pdb:9670: CONECT ==> CONNECT
data/biojava-live-1.7.1/tests/files/3dl7_v32.pdb:9671: CONECT ==> CONNECT
data/biojava-live-1.7.1/tests/files/3dl7_v32.pdb:9672: CONECT ==> CONNECT
data/biojava-live-1.7.1/tests/files/3dl7_v32.pdb:9673: CONECT ==> CONNECT
data/biojava-live-1.7.1/tests/files/3dl7_v32.pdb:9674: CONECT ==> CONNECT
data/biojava-live-1.7.1/tests/files/3dl7_v32.pdb:9675: CONECT ==> CONNECT
data/biojava-live-1.7.1/tests/files/3dl7_v32.pdb:9676: CONECT ==> CONNECT
data/biojava-live-1.7.1/tests/files/3dl7_v32.pdb:9677: CONECT ==> CONNECT
data/biojava-live-1.7.1/tests/files/3dl7_v32.pdb:9678: CONECT ==> CONNECT
data/biojava-live-1.7.1/tests/files/3dl7_v32.pdb:9679: CONECT ==> CONNECT
data/biojava-live-1.7.1/tests/files/3dl7_v32.pdb:9680: CONECT ==> CONNECT
data/biojava-live-1.7.1/tests/files/3dl7_v32.pdb:9681: CONECT ==> CONNECT
data/biojava-live-1.7.1/tests/files/3dl7_v32.pdb:9682: CONECT ==> CONNECT
data/biojava-live-1.7.1/tests/files/3dl7_v32.pdb:9683: CONECT ==> CONNECT
data/biojava-live-1.7.1/tests/files/3dl7_v32.pdb:9684: CONECT ==> CONNECT
data/biojava-live-1.7.1/tests/files/3dl7_v32.pdb:9685: CONECT ==> CONNECT
data/biojava-live-1.7.1/tests/files/3dl7_v32.pdb:9686: CONECT ==> CONNECT
data/biojava-live-1.7.1/tests/files/3dl7_v32.pdb:9687: CONECT ==> CONNECT
data/biojava-live-1.7.1/tests/files/3dl7_v32.pdb:9688: CONECT ==> CONNECT
data/biojava-live-1.7.1/tests/files/3dl7_v32.pdb:9689: CONECT ==> CONNECT
data/biojava-live-1.7.1/tests/files/3dl7_v32.pdb:9690: CONECT ==> CONNECT
data/biojava-live-1.7.1/tests/files/3dl7_v32.pdb:9691: CONECT ==> CONNECT
data/biojava-live-1.7.1/tests/files/3dl7_v32.pdb:9692: CONECT ==> CONNECT
data/biojava-live-1.7.1/tests/files/3dl7_v32.pdb:9693: CONECT ==> CONNECT
data/biojava-live-1.7.1/tests/files/3dl7_v32.pdb:9694: CONECT ==> CONNECT
data/biojava-live-1.7.1/tests/files/3dl7_v32.pdb:9695: CONECT ==> CONNECT
data/biojava-live-1.7.1/tests/files/3dl7_v32.pdb:9696: CONECT ==> CONNECT
data/biojava-live-1.7.1/tests/files/3dl7_v32.pdb:9697: CONECT ==> CONNECT
data/biojava-live-1.7.1/tests/files/3dl7_v32.pdb:9698: CONECT ==> CONNECT
data/biojava-live-1.7.1/tests/files/3dl7_v32.pdb:9699: CONECT ==> CONNECT
data/biojava-live-1.7.1/tests/files/3dl7_v32.pdb:9700: CONECT ==> CONNECT
data/biojava-live-1.7.1/tests/files/3dl7_v32.pdb:9701: CONECT ==> CONNECT
data/biojava-live-1.7.1/tests/files/3dl7_v32.pdb:9702: CONECT ==> CONNECT
data/biojava-live-1.7.1/tests/files/3dl7_v32.pdb:9703: CONECT ==> CONNECT
data/biojava-live-1.7.1/tests/files/3dl7_v32.pdb:9704: CONECT ==> CONNECT
data/biojava-live-1.7.1/tests/files/3dl7_v32.pdb:9705: CONECT ==> CONNECT
data/biojava-live-1.7.1/tests/files/3dl7_v32.pdb:9706: CONECT ==> CONNECT
data/biojava-live-1.7.1/tests/files/3dl7_v32.pdb:9707: CONECT ==> CONNECT
data/biojava-live-1.7.1/tests/files/3dl7_v32.pdb:9708: CONECT ==> CONNECT
data/biojava-live-1.7.1/tests/files/3dl7_v32.pdb:9709: CONECT ==> CONNECT
data/biojava-live-1.7.1/tests/files/5pti.pdb:327: UNX ==> UNIX
data/biojava-live-1.7.1/tests/files/5pti.pdb:336: UNX ==> UNIX
data/biojava-live-1.7.1/tests/files/5pti.pdb:341: SER ==> SET
data/biojava-live-1.7.1/tests/files/5pti.pdb:344: UNX ==> UNIX
data/biojava-live-1.7.1/tests/files/5pti.pdb:346: UNX ==> UNIX
data/biojava-live-1.7.1/tests/files/5pti.pdb:349: UNX ==> UNIX
data/biojava-live-1.7.1/tests/files/5pti.pdb:352: SER ==> SET
data/biojava-live-1.7.1/tests/files/5pti.pdb:1122: SER ==> SET
data/biojava-live-1.7.1/tests/files/5pti.pdb:1123: SER ==> SET
data/biojava-live-1.7.1/tests/files/5pti.pdb:1124: SER ==> SET
data/biojava-live-1.7.1/tests/files/5pti.pdb:1125: SER ==> SET
data/biojava-live-1.7.1/tests/files/5pti.pdb:1126: SER ==> SET
data/biojava-live-1.7.1/tests/files/5pti.pdb:1127: SER ==> SET
data/biojava-live-1.7.1/tests/files/5pti.pdb:1128: SER ==> SET
data/biojava-live-1.7.1/tests/files/5pti.pdb:1129: SER ==> SET
data/biojava-live-1.7.1/tests/files/5pti.pdb:1130: SER ==> SET
data/biojava-live-1.7.1/tests/files/5pti.pdb:1131: SER ==> SET
data/biojava-live-1.7.1/tests/files/5pti.pdb:1132: SER ==> SET
data/biojava-live-1.7.1/tests/files/5pti.pdb:1284: UNX ==> UNIX
data/biojava-live-1.7.1/tests/files/5pti.pdb:1474: CONECT ==> CONNECT
data/biojava-live-1.7.1/tests/files/5pti.pdb:1475: CONECT ==> CONNECT
data/biojava-live-1.7.1/tests/files/5pti.pdb:1476: CONECT ==> CONNECT
data/biojava-live-1.7.1/tests/files/5pti.pdb:1477: CONECT ==> CONNECT
data/biojava-live-1.7.1/tests/files/5pti.pdb:1478: CONECT ==> CONNECT
data/biojava-live-1.7.1/tests/files/5pti.pdb:1479: CONECT ==> CONNECT
data/biojava-live-1.7.1/tests/files/5pti.pdb:1480: CONECT ==> CONNECT
data/biojava-live-1.7.1/tests/files/5pti.pdb:1481: CONECT ==> CONNECT
data/biojava-live-1.7.1/tests/files/5pti.pdb:1482: CONECT ==> CONNECT
data/biojava-live-1.7.1/tests/files/5pti.pdb:1483: CONECT ==> CONNECT
data/biojava-live-1.7.1/tests/files/5pti.pdb:1484: CONECT ==> CONNECT
data/biojava-live-1.7.1/tests/files/1a4w.pdb:278: SER ==> SET
data/biojava-live-1.7.1/tests/files/1a4w.pdb:349: SER ==> SET
data/biojava-live-1.7.1/tests/files/1a4w.pdb:365: SER ==> SET
data/biojava-live-1.7.1/tests/files/1a4w.pdb:409: SER ==> SET
data/biojava-live-1.7.1/tests/files/1a4w.pdb:417: SER ==> SET
data/biojava-live-1.7.1/tests/files/1a4w.pdb:448: SER ==> SET
data/biojava-live-1.7.1/tests/files/1a4w.pdb:504: ANS ==> AND
data/biojava-live-1.7.1/tests/files/1a4w.pdb:518: SER ==> SET
data/biojava-live-1.7.1/tests/files/1a4w.pdb:519: SER ==> SET
data/biojava-live-1.7.1/tests/files/1a4w.pdb:520: SER ==> SET
data/biojava-live-1.7.1/tests/files/1a4w.pdb:521: SER ==> SET
data/biojava-live-1.7.1/tests/files/1a4w.pdb:521: SER ==> SET
data/biojava-live-1.7.1/tests/files/1a4w.pdb:522: SER ==> SET
data/biojava-live-1.7.1/tests/files/1a4w.pdb:523: SER ==> SET
data/biojava-live-1.7.1/tests/files/1a4w.pdb:523: SER ==> SET
data/biojava-live-1.7.1/tests/files/1a4w.pdb:526: SER ==> SET
data/biojava-live-1.7.1/tests/files/1a4w.pdb:527: SER ==> SET
data/biojava-live-1.7.1/tests/files/1a4w.pdb:529: SER ==> SET
data/biojava-live-1.7.1/tests/files/1a4w.pdb:530: SER ==> SET
data/biojava-live-1.7.1/tests/files/1a4w.pdb:533: SER ==> SET
data/biojava-live-1.7.1/tests/files/1a4w.pdb:534: SER ==> SET
data/biojava-live-1.7.1/tests/files/1a4w.pdb:536: SER ==> SET
data/biojava-live-1.7.1/tests/files/1a4w.pdb:537: SER ==> SET
data/biojava-live-1.7.1/tests/files/1a4w.pdb:538: SER ==> SET
data/biojava-live-1.7.1/tests/files/1a4w.pdb:546: ANS ==> AND
data/biojava-live-1.7.1/tests/files/1a4w.pdb:552: ANS ==> AND
data/biojava-live-1.7.1/tests/files/1a4w.pdb:553: ANS ==> AND
data/biojava-live-1.7.1/tests/files/1a4w.pdb:557: ANS ==> AND
data/biojava-live-1.7.1/tests/files/1a4w.pdb:560: ANS ==> AND
data/biojava-live-1.7.1/tests/files/1a4w.pdb:566: SER ==> SET
data/biojava-live-1.7.1/tests/files/1a4w.pdb:588: ANS ==> AND
data/biojava-live-1.7.1/tests/files/1a4w.pdb:603: SER ==> SET
data/biojava-live-1.7.1/tests/files/1a4w.pdb:604: SER ==> SET
data/biojava-live-1.7.1/tests/files/1a4w.pdb:612: ANS ==> AND
data/biojava-live-1.7.1/tests/files/1a4w.pdb:713: SER ==> SET
data/biojava-live-1.7.1/tests/files/1a4w.pdb:714: SER ==> SET
data/biojava-live-1.7.1/tests/files/1a4w.pdb:715: SER ==> SET
data/biojava-live-1.7.1/tests/files/1a4w.pdb:716: SER ==> SET
data/biojava-live-1.7.1/tests/files/1a4w.pdb:717: SER ==> SET
data/biojava-live-1.7.1/tests/files/1a4w.pdb:718: SER ==> SET
data/biojava-live-1.7.1/tests/files/1a4w.pdb:804: SER ==> SET
data/biojava-live-1.7.1/tests/files/1a4w.pdb:805: SER ==> SET
data/biojava-live-1.7.1/tests/files/1a4w.pdb:806: SER ==> SET
data/biojava-live-1.7.1/tests/files/1a4w.pdb:807: SER ==> SET
data/biojava-live-1.7.1/tests/files/1a4w.pdb:808: SER ==> SET
data/biojava-live-1.7.1/tests/files/1a4w.pdb:809: SER ==> SET
data/biojava-live-1.7.1/tests/files/1a4w.pdb:855: SER ==> SET
data/biojava-live-1.7.1/tests/files/1a4w.pdb:856: SER ==> SET
data/biojava-live-1.7.1/tests/files/1a4w.pdb:857: SER ==> SET
data/biojava-live-1.7.1/tests/files/1a4w.pdb:858: SER ==> SET
data/biojava-live-1.7.1/tests/files/1a4w.pdb:859: SER ==> SET
data/biojava-live-1.7.1/tests/files/1a4w.pdb:860: SER ==> SET
data/biojava-live-1.7.1/tests/files/1a4w.pdb:903: SER ==> SET
data/biojava-live-1.7.1/tests/files/1a4w.pdb:904: SER ==> SET
data/biojava-live-1.7.1/tests/files/1a4w.pdb:905: SER ==> SET
data/biojava-live-1.7.1/tests/files/1a4w.pdb:906: SER ==> SET
data/biojava-live-1.7.1/tests/files/1a4w.pdb:907: SER ==> SET
data/biojava-live-1.7.1/tests/files/1a4w.pdb:908: SER ==> SET
data/biojava-live-1.7.1/tests/files/1a4w.pdb:993: SER ==> SET
data/biojava-live-1.7.1/tests/files/1a4w.pdb:994: SER ==> SET
data/biojava-live-1.7.1/tests/files/1a4w.pdb:995: SER ==> SET
data/biojava-live-1.7.1/tests/files/1a4w.pdb:996: SER ==> SET
data/biojava-live-1.7.1/tests/files/1a4w.pdb:997: SER ==> SET
data/biojava-live-1.7.1/tests/files/1a4w.pdb:998: SER ==> SET
data/biojava-live-1.7.1/tests/files/1a4w.pdb:1055: SER ==> SET
data/biojava-live-1.7.1/tests/files/1a4w.pdb:1056: SER ==> SET
data/biojava-live-1.7.1/tests/files/1a4w.pdb:1057: SER ==> SET
data/biojava-live-1.7.1/tests/files/1a4w.pdb:1058: SER ==> SET
data/biojava-live-1.7.1/tests/files/1a4w.pdb:1059: SER ==> SET
data/biojava-live-1.7.1/tests/files/1a4w.pdb:1060: SER ==> SET
data/biojava-live-1.7.1/tests/files/1a4w.pdb:1077: SER ==> SET
data/biojava-live-1.7.1/tests/files/1a4w.pdb:1078: SER ==> SET
data/biojava-live-1.7.1/tests/files/1a4w.pdb:1079: SER ==> SET
data/biojava-live-1.7.1/tests/files/1a4w.pdb:1080: SER ==> SET
data/biojava-live-1.7.1/tests/files/1a4w.pdb:1081: SER ==> SET
data/biojava-live-1.7.1/tests/files/1a4w.pdb:1082: SER ==> SET
data/biojava-live-1.7.1/tests/files/1a4w.pdb:1349: SER ==> SET
data/biojava-live-1.7.1/tests/files/1a4w.pdb:1350: SER ==> SET
data/biojava-live-1.7.1/tests/files/1a4w.pdb:1351: SER ==> SET
data/biojava-live-1.7.1/tests/files/1a4w.pdb:1352: SER ==> SET
data/biojava-live-1.7.1/tests/files/1a4w.pdb:1353: SER ==> SET
data/biojava-live-1.7.1/tests/files/1a4w.pdb:1354: SER ==> SET
data/biojava-live-1.7.1/tests/files/1a4w.pdb:1444: SER ==> SET
data/biojava-live-1.7.1/tests/files/1a4w.pdb:1445: SER ==> SET
data/biojava-live-1.7.1/tests/files/1a4w.pdb:1446: SER ==> SET
data/biojava-live-1.7.1/tests/files/1a4w.pdb:1447: SER ==> SET
data/biojava-live-1.7.1/tests/files/1a4w.pdb:1448: SER ==> SET
data/biojava-live-1.7.1/tests/files/1a4w.pdb:1449: SER ==> SET
data/biojava-live-1.7.1/tests/files/1a4w.pdb:1727: SER ==> SET
data/biojava-live-1.7.1/tests/files/1a4w.pdb:1728: SER ==> SET
data/biojava-live-1.7.1/tests/files/1a4w.pdb:1729: SER ==> SET
data/biojava-live-1.7.1/tests/files/1a4w.pdb:1730: SER ==> SET
data/biojava-live-1.7.1/tests/files/1a4w.pdb:1731: SER ==> SET
data/biojava-live-1.7.1/tests/files/1a4w.pdb:1732: SER ==> SET
data/biojava-live-1.7.1/tests/files/1a4w.pdb:1848: SER ==> SET
data/biojava-live-1.7.1/tests/files/1a4w.pdb:1849: SER ==> SET
data/biojava-live-1.7.1/tests/files/1a4w.pdb:1850: SER ==> SET
data/biojava-live-1.7.1/tests/files/1a4w.pdb:1851: SER ==> SET
data/biojava-live-1.7.1/tests/files/1a4w.pdb:1852: SER ==> SET
data/biojava-live-1.7.1/tests/files/1a4w.pdb:1853: SER ==> SET
data/biojava-live-1.7.1/tests/files/1a4w.pdb:2010: SER ==> SET
data/biojava-live-1.7.1/tests/files/1a4w.pdb:2011: SER ==> SET
data/biojava-live-1.7.1/tests/files/1a4w.pdb:2012: SER ==> SET
data/biojava-live-1.7.1/tests/files/1a4w.pdb:2013: SER ==> SET
data/biojava-live-1.7.1/tests/files/1a4w.pdb:2014: SER ==> SET
data/biojava-live-1.7.1/tests/files/1a4w.pdb:2015: SER ==> SET
data/biojava-live-1.7.1/tests/files/1a4w.pdb:2149: SER ==> SET
data/biojava-live-1.7.1/tests/files/1a4w.pdb:2150: SER ==> SET
data/biojava-live-1.7.1/tests/files/1a4w.pdb:2151: SER ==> SET
data/biojava-live-1.7.1/tests/files/1a4w.pdb:2152: SER ==> SET
data/biojava-live-1.7.1/tests/files/1a4w.pdb:2153: SER ==> SET
data/biojava-live-1.7.1/tests/files/1a4w.pdb:2154: SER ==> SET
data/biojava-live-1.7.1/tests/files/1a4w.pdb:2366: SER ==> SET
data/biojava-live-1.7.1/tests/files/1a4w.pdb:2367: SER ==> SET
data/biojava-live-1.7.1/tests/files/1a4w.pdb:2368: SER ==> SET
data/biojava-live-1.7.1/tests/files/1a4w.pdb:2369: SER ==> SET
data/biojava-live-1.7.1/tests/files/1a4w.pdb:2370: SER ==> SET
data/biojava-live-1.7.1/tests/files/1a4w.pdb:2371: SER ==> SET
data/biojava-live-1.7.1/tests/files/1a4w.pdb:2422: SER ==> SET
data/biojava-live-1.7.1/tests/files/1a4w.pdb:2423: SER ==> SET
data/biojava-live-1.7.1/tests/files/1a4w.pdb:2424: SER ==> SET
data/biojava-live-1.7.1/tests/files/1a4w.pdb:2425: SER ==> SET
data/biojava-live-1.7.1/tests/files/1a4w.pdb:2426: SER ==> SET
data/biojava-live-1.7.1/tests/files/1a4w.pdb:2427: SER ==> SET
data/biojava-live-1.7.1/tests/files/1a4w.pdb:2535: SER ==> SET
data/biojava-live-1.7.1/tests/files/1a4w.pdb:2536: SER ==> SET
data/biojava-live-1.7.1/tests/files/1a4w.pdb:2537: SER ==> SET
data/biojava-live-1.7.1/tests/files/1a4w.pdb:2538: SER ==> SET
data/biojava-live-1.7.1/tests/files/1a4w.pdb:2539: SER ==> SET
data/biojava-live-1.7.1/tests/files/1a4w.pdb:2540: SER ==> SET
data/biojava-live-1.7.1/tests/files/1a4w.pdb:2866: ANS ==> AND
data/biojava-live-1.7.1/tests/files/1a4w.pdb:2867: ANS ==> AND
data/biojava-live-1.7.1/tests/files/1a4w.pdb:2868: ANS ==> AND
data/biojava-live-1.7.1/tests/files/1a4w.pdb:2869: ANS ==> AND
data/biojava-live-1.7.1/tests/files/1a4w.pdb:2870: ANS ==> AND
data/biojava-live-1.7.1/tests/files/1a4w.pdb:2871: ANS ==> AND
data/biojava-live-1.7.1/tests/files/1a4w.pdb:2872: ANS ==> AND
data/biojava-live-1.7.1/tests/files/1a4w.pdb:2873: ANS ==> AND
data/biojava-live-1.7.1/tests/files/1a4w.pdb:2874: ANS ==> AND
data/biojava-live-1.7.1/tests/files/1a4w.pdb:2875: ANS ==> AND
data/biojava-live-1.7.1/tests/files/1a4w.pdb:2876: ANS ==> AND
data/biojava-live-1.7.1/tests/files/1a4w.pdb:2877: ANS ==> AND
data/biojava-live-1.7.1/tests/files/1a4w.pdb:2878: ANS ==> AND
data/biojava-live-1.7.1/tests/files/1a4w.pdb:2879: ANS ==> AND
data/biojava-live-1.7.1/tests/files/1a4w.pdb:2880: ANS ==> AND
data/biojava-live-1.7.1/tests/files/1a4w.pdb:2881: ANS ==> AND
data/biojava-live-1.7.1/tests/files/1a4w.pdb:3065: CONECT ==> CONNECT
data/biojava-live-1.7.1/tests/files/1a4w.pdb:3066: CONECT ==> CONNECT
data/biojava-live-1.7.1/tests/files/1a4w.pdb:3067: CONECT ==> CONNECT
data/biojava-live-1.7.1/tests/files/1a4w.pdb:3068: CONECT ==> CONNECT
data/biojava-live-1.7.1/tests/files/1a4w.pdb:3069: CONECT ==> CONNECT
data/biojava-live-1.7.1/tests/files/1a4w.pdb:3070: CONECT ==> CONNECT
data/biojava-live-1.7.1/tests/files/1a4w.pdb:3071: CONECT ==> CONNECT
data/biojava-live-1.7.1/tests/files/1a4w.pdb:3072: CONECT ==> CONNECT
data/biojava-live-1.7.1/tests/files/1a4w.pdb:3073: CONECT ==> CONNECT
data/biojava-live-1.7.1/tests/files/1a4w.pdb:3074: CONECT ==> CONNECT
data/biojava-live-1.7.1/tests/files/1a4w.pdb:3075: CONECT ==> CONNECT
data/biojava-live-1.7.1/tests/files/1a4w.pdb:3076: CONECT ==> CONNECT
data/biojava-live-1.7.1/tests/files/1a4w.pdb:3077: CONECT ==> CONNECT
data/biojava-live-1.7.1/tests/files/1a4w.pdb:3078: CONECT ==> CONNECT
data/biojava-live-1.7.1/tests/files/1a4w.pdb:3079: CONECT ==> CONNECT
data/biojava-live-1.7.1/tests/files/1a4w.pdb:3080: CONECT ==> CONNECT
data/biojava-live-1.7.1/tests/files/1a4w.pdb:3081: CONECT ==> CONNECT
data/biojava-live-1.7.1/tests/files/1a4w.pdb:3082: CONECT ==> CONNECT
data/biojava-live-1.7.1/tests/files/1a4w.pdb:3083: CONECT ==> CONNECT
data/biojava-live-1.7.1/tests/files/1a4w.pdb:3084: CONECT ==> CONNECT
data/biojava-live-1.7.1/tests/files/1a4w.pdb:3085: CONECT ==> CONNECT
data/biojava-live-1.7.1/tests/files/1a4w.pdb:3086: CONECT ==> CONNECT
data/biojava-live-1.7.1/tests/files/1a4w.pdb:3087: CONECT ==> CONNECT
data/biojava-live-1.7.1/tests/files/1a4w.pdb:3088: CONECT ==> CONNECT
data/biojava-live-1.7.1/tests/files/1a4w.pdb:3089: CONECT ==> CONNECT
data/biojava-live-1.7.1/tests/files/1a4w.pdb:3090: CONECT ==> CONNECT
data/biojava-live-1.7.1/tests/files/1a4w.pdb:3091: CONECT ==> CONNECT
data/biojava-live-1.7.1/tests/files/1a4w.pdb:3092: CONECT ==> CONNECT
data/biojava-live-1.7.1/tests/files/1a4w.pdb:3093: CONECT ==> CONNECT
data/biojava-live-1.7.1/tests/files/1a4w.pdb:3094: CONECT ==> CONNECT
data/biojava-live-1.7.1/tests/files/1a4w.pdb:3095: CONECT ==> CONNECT
data/biojava-live-1.7.1/tests/files/1a4w.pdb:3096: CONECT ==> CONNECT
data/biojava-live-1.7.1/tests/files/1a4w.pdb:3097: CONECT ==> CONNECT
data/biojava-live-1.7.1/tests/files/1a4w.pdb:3098: CONECT ==> CONNECT
data/biojava-live-1.7.1/tests/files/1a4w.pdb:3099: CONECT ==> CONNECT
data/biojava-live-1.7.1/tests/files/1a4w.pdb:3100: CONECT ==> CONNECT
data/biojava-live-1.7.1/tests/files/1a4w.pdb:3101: CONECT ==> CONNECT
data/biojava-live-1.7.1/tests/files/1a4w.pdb:3102: CONECT ==> CONNECT
data/biojava-live-1.7.1/tests/files/1a4w.pdb:3103: CONECT ==> CONNECT
data/biojava-live-1.7.1/tests/files/1a4w.pdb:3104: CONECT ==> CONNECT
data/biojava-live-1.7.1/tests/files/1a4w.pdb:3105: CONECT ==> CONNECT
data/biojava-live-1.7.1/tests/files/1a4w.pdb:3106: CONECT ==> CONNECT
data/biojava-live-1.7.1/tests/files/1a4w.pdb:3107: CONECT ==> CONNECT
data/biojava-live-1.7.1/tests/files/1a4w.pdb:3108: CONECT ==> CONNECT
data/biojava-live-1.7.1/tests/files/1a4w.pdb:3109: CONECT ==> CONNECT
data/biojava-live-1.7.1/tests/files/1a4w.pdb:3110: CONECT ==> CONNECT
data/biojava-live-1.7.1/tests/files/1a4w.pdb:3111: CONECT ==> CONNECT
data/biojava-live-1.7.1/tests/files/1a4w.pdb:3112: CONECT ==> CONNECT
data/biojava-live-1.7.1/tests/files/1a4w.pdb:3113: CONECT ==> CONNECT
data/biojava-live-1.7.1/tests/files/1a4w.pdb:3114: CONECT ==> CONNECT
data/biojava-live-1.7.1/tests/files/1a4w.pdb:3115: CONECT ==> CONNECT
data/biojava-live-1.7.1/tests/files/1a4w.pdb:3116: CONECT ==> CONNECT
data/biojava-live-1.7.1/tests/files/1a4w.pdb:3117: CONECT ==> CONNECT
data/biojava-live-1.7.1/tests/files/1a4w.pdb:3118: CONECT ==> CONNECT
data/biojava-live-1.7.1/tests/files/1a4w.pdb:3119: CONECT ==> CONNECT
data/biojava-live-1.7.1/tests/files/1a4w.pdb:3120: CONECT ==> CONNECT
data/biojava-live-1.7.1/tests/files/1a4w.pdb:3121: CONECT ==> CONNECT
data/biojava-live-1.7.1/tests/files/1a4w.pdb:3122: CONECT ==> CONNECT
data/biojava-live-1.7.1/tests/files/1a4w.pdb:3123: CONECT ==> CONNECT
data/biojava-live-1.7.1/tests/files/1a4w.pdb:3124: CONECT ==> CONNECT
data/biojava-live-1.7.1/tests/files/1a4w.pdb:3125: CONECT ==> CONNECT
data/biojava-live-1.7.1/tests/files/1a4w.pdb:3126: CONECT ==> CONNECT
data/biojava-live-1.7.1/tests/files/1a4w.pdb:3127: CONECT ==> CONNECT
data/biojava-live-1.7.1/tests/files/1a4w.pdb:3128: CONECT ==> CONNECT
data/biojava-live-1.7.1/tests/files/1a4w.pdb:3129: CONECT ==> CONNECT
data/biojava-live-1.7.1/tests/files/1a4w.pdb:3130: CONECT ==> CONNECT
data/biojava-live-1.7.1/tests/files/1a4w.pdb:3131: CONECT ==> CONNECT
data/biojava-live-1.7.1/tests/files/1a4w.pdb:3132: CONECT ==> CONNECT
data/biojava-live-1.7.1/tests/files/1a4w.pdb:3133: CONECT ==> CONNECT
data/biojava-live-1.7.1/tests/files/1a4w.pdb:3134: CONECT ==> CONNECT
data/biojava-live-1.7.1/tests/files/1a4w.pdb:3135: CONECT ==> CONNECT
data/biojava-live-1.7.1/tests/files/1a4w.pdb:3136: CONECT ==> CONNECT
data/biojava-live-1.7.1/tests/files/1a4w.pdb:3137: CONECT ==> CONNECT
data/biojava-live-1.7.1/tests/files/1a4w.pdb:3138: CONECT ==> CONNECT
data/biojava-live-1.7.1/tests/files/1a4w.pdb:3139: CONECT ==> CONNECT
data/biojava-live-1.7.1/tests/files/1a4w.pdb:3140: CONECT ==> CONNECT
data/biojava-live-1.7.1/tests/files/1a4w.pdb:3141: CONECT ==> CONNECT
data/biojava-live-1.7.1/tests/files/1a4w.pdb:3142: CONECT ==> CONNECT
data/biojava-live-1.7.1/tests/files/1a4w.pdb:3143: CONECT ==> CONNECT
data/biojava-live-1.7.1/tests/files/1a4w.pdb:3144: CONECT ==> CONNECT
data/biojava-live-1.7.1/tests/files/1a4w.pdb:3145: CONECT ==> CONNECT
data/biojava-live-1.7.1/tests/files/1a4w.pdb:3146: CONECT ==> CONNECT
data/biojava-live-1.7.1/tests/files/biosqldb-hsqldb.sql:20: documetation ==> documentation
data/biojava-live-1.7.1/tests/files/org/biojava/bio/ontology/evidence_code.obo:240: nin ==> inn, min, bin, nine
data/biojava-live-1.7.1/tests/files/org/biojava/bio/ontology/evidence_code.obo:247: ND ==> AND, 2ND
data/biojava-live-1.7.1/tests/files/org/biojava/bio/ontology/evidence_code.obo:247: ND ==> AND, 2ND
data/biojava-live-1.7.1/tests/files/org/biojava/bio/ontology/evidence_code.obo:248: ND ==> AND, 2ND
data/biojava-live-1.7.1/tests/files/org/biojava/bio/ontology/evidence_code.obo:334: supressor ==> suppressor
data/biojava-live-1.7.1/tests/files/org/biojava/bio/ontology/biosapiens.obo:966: oposite ==> opposite
data/biojava-live-1.7.1/tests/files/org/biojava/bio/ontology/biosapiens.obo:975: oposite ==> opposite
data/biojava-live-1.7.1/tests/files/org/biojava/bio/ontology/biosapiens.obo:1280: occuring ==> occurring
data/biojava-live-1.7.1/tests/files/org/biojava/bio/ontology/biosapiens.obo:1954: Ser ==> Set
data/biojava-live-1.7.1/tests/files/org/biojava/bio/ontology/biosapiens.obo:5803: Ser ==> Set
data/biojava-live-1.7.1/tests/files/org/biojava/bio/ontology/biosapiens.obo:5805: Ser ==> Set
data/biojava-live-1.7.1/tests/files/org/biojava/bio/ontology/biosapiens.obo:5806: Ser ==> Set
data/biojava-live-1.7.1/tests/files/org/biojava/bio/ontology/biosapiens.obo:5923: Ser ==> Set
data/biojava-live-1.7.1/tests/files/org/biojava/bio/ontology/biosapiens.obo:6091: Ser ==> Set
data/biojava-live-1.7.1/tests/files/org/biojava/bio/ontology/biosapiens.obo:6093: Ser ==> Set
data/biojava-live-1.7.1/tests/files/org/biojava/bio/ontology/biosapiens.obo:6094: Ser ==> Set
data/biojava-live-1.7.1/tests/files/org/biojava/bio/ontology/biosapiens.obo:12058: ether ==> either
data/biojava-live-1.7.1/tests/files/org/biojava/bio/ontology/biosapiens.obo:12061: Ether ==> Either
data/biojava-live-1.7.1/tests/files/org/biojava/bio/ontology/biosapiens.obo:12844: wth ==> with
data/biojava-live-1.7.1/tests/files/org/biojava/bio/ontology/biosapiens.obo:12886: wth ==> with
data/biojava-live-1.7.1/tests/files/org/biojava/bio/ontology/biosapiens.obo:13358: redudant ==> redundant
data/biojava-live-1.7.1/tests/files/org/biojava/bio/ontology/biosapiens.obo:13706: addtion ==> addition
data/biojava-live-1.7.1/tests/files/org/biojava/bio/ontology/biosapiens.obo:13709: addtion ==> addition
data/biojava-live-1.7.1/tests/files/org/biojava/bio/ontology/biosapiens.obo:13806: redudant ==> redundant
data/biojava-live-1.7.1/tests/files/org/biojava/bio/ontology/biosapiens.obo:14152: redudant ==> redundant
data/biojava-live-1.7.1/tests/files/org/biojava/bio/ontology/biosapiens.obo:16691: Ser ==> Set
data/biojava-live-1.7.1/tests/files/org/biojava/bio/ontology/biosapiens.obo:16695: Ser ==> Set
data/biojava-live-1.7.1/tests/files/org/biojava/bio/ontology/biosapiens.obo:16864: redudant ==> redundant
data/biojava-live-1.7.1/tests/files/org/biojava/bio/ontology/biosapiens.obo:17306: Ser ==> Set
data/biojava-live-1.7.1/tests/files/org/biojava/bio/ontology/biosapiens.obo:17309: Ser ==> Set
data/biojava-live-1.7.1/tests/files/org/biojava/bio/ontology/biosapiens.obo:17478: Ser ==> Set
data/biojava-live-1.7.1/tests/files/org/biojava/bio/ontology/biosapiens.obo:17480: Ser ==> Set
data/biojava-live-1.7.1/tests/files/org/biojava/bio/ontology/biosapiens.obo:17481: Ser ==> Set
data/biojava-live-1.7.1/tests/files/org/biojava/bio/ontology/biosapiens.obo:17839: Ser ==> Set
data/biojava-live-1.7.1/tests/files/org/biojava/bio/ontology/biosapiens.obo:18343: ether ==> either
data/biojava-live-1.7.1/tests/files/org/biojava/bio/ontology/biosapiens.obo:18346: ether ==> either
data/biojava-live-1.7.1/tests/files/org/biojava/bio/ontology/biosapiens.obo:18936: ofthe ==> of the
data/biojava-live-1.7.1/tests/files/org/biojava/bio/ontology/biosapiens.obo:19193: Ser ==> Set
data/biojava-live-1.7.1/tests/files/org/biojava/bio/ontology/biosapiens.obo:20332: elminate ==> eliminate
data/biojava-live-1.7.1/tests/files/org/biojava/bio/ontology/biosapiens.obo:21265: unfortunaltely ==> unfortunately
data/biojava-live-1.7.1/tests/files/org/biojava/bio/ontology/biosapiens.obo:21313: unfortunaltely ==> unfortunately
data/biojava-live-1.7.1/tests/files/org/biojava/bio/ontology/biosapiens.obo:21965: modifation ==> modification
data/biojava-live-1.7.1/tests/files/org/biojava/bio/ontology/biosapiens.obo:23329: addtion ==> addition
data/biojava-live-1.7.1/tests/files/org/biojava/bio/ontology/biosapiens.obo:23332: addtion ==> addition
data/biojava-live-1.7.1/tests/files/org/biojava/bio/ontology/biosapiens.obo:23342: addtion ==> addition
data/biojava-live-1.7.1/tests/files/org/biojava/bio/ontology/biosapiens.obo:23346: addtion ==> addition
data/biojava-live-1.7.1/tests/files/org/biojava/bio/ontology/biosapiens.obo:23349: addtion ==> addition
data/biojava-live-1.7.1/tests/files/org/biojava/bio/ontology/biosapiens.obo:23359: addtion ==> addition
data/biojava-live-1.7.1/tests/files/org/biojava/bio/ontology/biosapiens.obo:23363: addtion ==> addition
data/biojava-live-1.7.1/tests/files/org/biojava/bio/ontology/biosapiens.obo:23366: addtion ==> addition
data/biojava-live-1.7.1/tests/files/org/biojava/bio/ontology/biosapiens.obo:23376: addtion ==> addition
data/biojava-live-1.7.1/tests/files/org/biojava/bio/ontology/biosapiens.obo:23380: addtion ==> addition
data/biojava-live-1.7.1/tests/files/org/biojava/bio/ontology/biosapiens.obo:23383: addtion ==> addition
data/biojava-live-1.7.1/tests/files/org/biojava/bio/ontology/biosapiens.obo:23393: addtion ==> addition
data/biojava-live-1.7.1/tests/files/org/biojava/bio/ontology/biosapiens.obo:23397: addtion ==> addition
data/biojava-live-1.7.1/tests/files/org/biojava/bio/ontology/biosapiens.obo:23400: addtion ==> addition
data/biojava-live-1.7.1/tests/files/org/biojava/bio/ontology/biosapiens.obo:23410: addtion ==> addition
data/biojava-live-1.7.1/tests/files/org/biojava/bio/ontology/biosapiens.obo:23414: addtion ==> addition
data/biojava-live-1.7.1/tests/files/org/biojava/bio/ontology/biosapiens.obo:23417: addtion ==> addition
data/biojava-live-1.7.1/tests/files/org/biojava/bio/ontology/biosapiens.obo:23427: addtion ==> addition
data/biojava-live-1.7.1/tests/files/org/biojava/bio/ontology/so.obo:997: occuring ==> occurring
data/biojava-live-1.7.1/tests/files/org/biojava/bio/ontology/so.obo:998: Exapmles ==> Examples
data/biojava-live-1.7.1/tests/files/org/biojava/bio/ontology/so.obo:1084: unvailable ==> unavailable
data/biojava-live-1.7.1/tests/files/org/biojava/bio/ontology/so.obo:1165: occured ==> occurred
data/biojava-live-1.7.1/tests/files/org/biojava/bio/ontology/so.obo:3669: occuring ==> occurring
data/biojava-live-1.7.1/tests/files/org/biojava/bio/ontology/so.obo:5715: respose ==> response
data/biojava-live-1.7.1/tests/files/org/biojava/bio/ontology/so.obo:5807: atrribute ==> attribute
data/biojava-live-1.7.1/tests/files/org/biojava/bio/ontology/so.obo:5885: TE ==> THE, BE, WE
data/biojava-live-1.7.1/tests/files/org/biojava/bio/ontology/so.obo:5885: TE ==> THE, BE, WE
data/biojava-live-1.7.1/tests/files/org/biojava/bio/ontology/so.obo:5897: TE ==> THE, BE, WE
data/biojava-live-1.7.1/tests/files/org/biojava/bio/ontology/so.obo:5906: TE ==> THE, BE, WE
data/biojava-live-1.7.1/tests/files/org/biojava/bio/ontology/so.obo:6373: witht ==> with
data/biojava-live-1.7.1/tests/files/org/biojava/bio/ontology/so.obo:6383: conjuction ==> conjunction
data/biojava-live-1.7.1/tests/files/org/biojava/bio/ontology/so.obo:6403: occured ==> occurred
data/biojava-live-1.7.1/tests/files/org/biojava/bio/ontology/so.obo:6409: occured ==> occurred
data/biojava-live-1.7.1/tests/files/org/biojava/bio/ontology/so.obo:6485: diferent ==> different
data/biojava-live-1.7.1/tests/files/org/biojava/bio/ontology/so.obo:7661: desribe ==> describe
data/biojava-live-1.7.1/tests/files/org/biojava/bio/ontology/so.obo:8379: oposite ==> opposite
data/biojava-live-1.7.1/tests/files/org/biojava/bio/ontology/so.obo:8389: oposite ==> opposite
data/biojava-live-1.7.1/tests/files/org/biojava/bio/ontology/so.obo:8727: occuring ==> occurring
data/biojava-live-1.7.1/tests/files/org/biojava/bio/ontology/so.obo:9035: BRE ==> BE, BRIE
data/biojava-live-1.7.1/tests/files/org/biojava/bio/ontology/so.obo:9317: defintition ==> definition
data/biojava-live-1.7.1/tests/files/org/biojava/bio/ontology/so.obo:10731: atrribute ==> attribute
data/biojava-live-1.7.1/tests/files/org/biojava/bio/molbio/rebase.dat:8: Cann ==> Can
data/biojava-live-1.7.1/tests/files/org/biojava/bio/program/fastq/test1_sanger.fastq:80: BA ==> BY, BE
data/biojava-live-1.7.1/tests/files/org/biojava/bio/program/fastq/test1_sanger.fastq:280: BA ==> BY, BE
data/biojava-live-1.7.1/tests/files/org/biojava/bio/program/fastq/test1_sanger.fastq:424: BA ==> BY, BE
data/biojava-live-1.7.1/tests/files/org/biojava/bio/program/fastq/test1_sanger.fastq:888: BA ==> BY, BE
data/biojava-live-1.7.1/tests/files/org/biojava/bio/program/fastq/longreads_as_sanger.fastq:20: BA ==> BY, BE
data/biojava-live-1.7.1/tests/files/org/biojava/bio/program/fastq/longreads_original_sanger.fastq:52: BA ==> BY, BE
data/biojava-live-1.7.1/tests/files/org/biojava/bio/program/fastq/illumina_example.fastq:20: ba ==> by, be
data/biojava-live-1.7.1/tests/files/org/biojava/bio/program/fastq/illumina_example.fastq:124: ba ==> by, be
data/biojava-live-1.7.1/tests/files/org/biojava/bio/proteomics/aaindex/aaindex1:56: methode ==> method
data/biojava-live-1.7.1/tests/files/org/biojava/bio/proteomics/aaindex/aaindex1:72: methode ==> method
data/biojava-live-1.7.1/tests/files/org/biojava/bio/proteomics/aaindex/aaindex1:87: methode ==> method
data/biojava-live-1.7.1/tests/files/org/biojava/bio/proteomics/aaindex/aaindex1:3762: calcualted ==> calculated
data/biojava-live-1.7.1/tests/files/org/biojava/bio/proteomics/aaindex/aaindex1:3789: calcualted ==> calculated
data/biojava-live-1.7.1/tests/files/org/biojava/bio/proteomics/aaindex/aaindex1:3802: calcualted ==> calculated
data/biojava-live-1.7.1/tests/files/org/biojava/bio/proteomics/aaindex/aaindex1:3833: calcualted ==> calculated
data/biojava-live-1.7.1/tests/files/org/biojava/bio/proteomics/aaindex/aaindex1:3845: calcualted ==> calculated
data/biojava-live-1.7.1/tests/files/org/biojava/bio/proteomics/aaindex/aaindex1:7364: Structual ==> Structural
data/biojava-live-1.7.1/demos/blastxml/BlastParser.java:69: te ==> the, be, we
data/biojava-live-1.7.1/demos/symbol/TestIndexedIntegers.java:10: alph ==> alpha
data/biojava-live-1.7.1/demos/symbol/TestIndexedIntegers.java:11: alph ==> alpha
data/biojava-live-1.7.1/demos/symbol/TestIndexedIntegers.java:19: alph ==> alpha
data/biojava-live-1.7.1/demos/symbol/TestIndexedIntegers.java:22: alph ==> alpha
data/biojava-live-1.7.1/demos/symbol/TestIndexedIntegers.java:26: alph ==> alpha
data/biojava-live-1.7.1/demos/symbol/TestIndexedIntegers.java:34: alph ==> alpha
data/biojava-live-1.7.1/demos/symbol/PatternDemo.java:94: abiguity ==> ambiguity
data/biojava-live-1.7.1/demos/tagvalue/Index.java:15: realy ==> really
data/biojava-live-1.7.1/demos/tagvalue/Parse.java:60: tthe ==> the
data/biojava-live-1.7.1/demos/tagvalue/Grep.java:46: tthe ==> the
data/biojava-live-1.7.1/demos/game/README.txt:5: annotaion ==> annotation
data/biojava-live-1.7.1/demos/game/README.txt:8: laod ==> load
data/biojava-live-1.7.1/demos/nativeapps/Pdb2XML.java:46: paramater ==> parameter
data/biojava-live-1.7.1/demos/nativeapps/BlastLike2XML.java:51: paramater ==> parameter
data/biojava-live-1.7.1/demos/dp/ViterbiAlign.java:54: likelyhood ==> likelihood
data/biojava-live-1.7.1/demos/dp/ViterbiAlign.java:57: addapted ==> adapted
data/biojava-live-1.7.1/demos/dp/package.html:7: grammers ==> grammars
data/biojava-live-1.7.1/demos/performance/ReverseComplement.java:117: competetive ==> competitive
data/biojava-live-1.7.1/demos/eventbasedparsing/Pdb2XML.java:46: paramater ==> parameter
data/biojava-live-1.7.1/demos/eventbasedparsing/BlastLike2XML.java:51: paramater ==> parameter
data/biojava-live-1.7.1/demos/eventbasedparsing/TutorialEx1Handler.java:59: Overides ==> Overrides
data/biojava-live-1.7.1/demos/eventbasedparsing/TutorialEx1Handler.java:77: Overides ==> Overrides
data/biojava-live-1.7.1/demos/ssbind/ProcessBlastReport.java:31: inbetween ==> between, in between
data/biojava-live-1.7.1/demos/CircLocTest/CircularLocationTester.java:32: abberations ==> aberrations
data/biojava-live-1.7.1/demos/seqviewer/BeadDemo.java:37: dispay ==> display
data/biojava-live-1.7.1/demos/files/fp_demo.db:103: ans ==> and
data/biojava-live-1.7.1/demos/files/test.hmm:5: ALPH ==> ALPHA
data/biojava-live-1.7.1/demos/files/AF438419.embl:33: Environnement ==> Environment
data/biojava-live-1.7.1/demos/files/fp_demo.m10:77: rever ==> revert, fever
data/biojava-live-1.7.1/demos/files/fp_demo.m10:537: ans ==> and
data/biojava-live-1.7.1/demos/files/fp_demo.m10:870: ans ==> and
data/biojava-live-1.7.1/demos/files/fp_demo.m10:892: ans ==> and
data/biojava-live-1.7.1/demos/files/hmmer/plus_tot.out:858: ist ==> is, it, its, it's, sit, list
data/biojava-live-1.7.1/demos/files/ontology/evidence_code.obo:240: nin ==> inn, min, bin, nine
data/biojava-live-1.7.1/demos/files/ontology/evidence_code.obo:247: ND ==> AND, 2ND
data/biojava-live-1.7.1/demos/files/ontology/evidence_code.obo:247: ND ==> AND, 2ND
data/biojava-live-1.7.1/demos/files/ontology/evidence_code.obo:248: ND ==> AND, 2ND
data/biojava-live-1.7.1/demos/files/ontology/evidence_code.obo:334: supressor ==> suppressor
data/biojava-live-1.7.1/demos/files/ontology/biosapiens.obo:966: oposite ==> opposite
data/biojava-live-1.7.1/demos/files/ontology/biosapiens.obo:975: oposite ==> opposite
data/biojava-live-1.7.1/demos/files/ontology/biosapiens.obo:1280: occuring ==> occurring
data/biojava-live-1.7.1/demos/files/ontology/biosapiens.obo:1954: Ser ==> Set
data/biojava-live-1.7.1/demos/files/ontology/biosapiens.obo:5803: Ser ==> Set
data/biojava-live-1.7.1/demos/files/ontology/biosapiens.obo:5805: Ser ==> Set
data/biojava-live-1.7.1/demos/files/ontology/biosapiens.obo:5806: Ser ==> Set
data/biojava-live-1.7.1/demos/files/ontology/biosapiens.obo:5923: Ser ==> Set
data/biojava-live-1.7.1/demos/files/ontology/biosapiens.obo:6091: Ser ==> Set
data/biojava-live-1.7.1/demos/files/ontology/biosapiens.obo:6093: Ser ==> Set
data/biojava-live-1.7.1/demos/files/ontology/biosapiens.obo:6094: Ser ==> Set
data/biojava-live-1.7.1/demos/files/ontology/biosapiens.obo:12058: ether ==> either
data/biojava-live-1.7.1/demos/files/ontology/biosapiens.obo:12061: Ether ==> Either
data/biojava-live-1.7.1/demos/files/ontology/biosapiens.obo:12844: wth ==> with
data/biojava-live-1.7.1/demos/files/ontology/biosapiens.obo:12886: wth ==> with
data/biojava-live-1.7.1/demos/files/ontology/biosapiens.obo:13358: redudant ==> redundant
data/biojava-live-1.7.1/demos/files/ontology/biosapiens.obo:13706: addtion ==> addition
data/biojava-live-1.7.1/demos/files/ontology/biosapiens.obo:13709: addtion ==> addition
data/biojava-live-1.7.1/demos/files/ontology/biosapiens.obo:13806: redudant ==> redundant
data/biojava-live-1.7.1/demos/files/ontology/biosapiens.obo:14152: redudant ==> redundant
data/biojava-live-1.7.1/demos/files/ontology/biosapiens.obo:16691: Ser ==> Set
data/biojava-live-1.7.1/demos/files/ontology/biosapiens.obo:16695: Ser ==> Set
data/biojava-live-1.7.1/demos/files/ontology/biosapiens.obo:16864: redudant ==> redundant
data/biojava-live-1.7.1/demos/files/ontology/biosapiens.obo:17306: Ser ==> Set
data/biojava-live-1.7.1/demos/files/ontology/biosapiens.obo:17309: Ser ==> Set
data/biojava-live-1.7.1/demos/files/ontology/biosapiens.obo:17478: Ser ==> Set
data/biojava-live-1.7.1/demos/files/ontology/biosapiens.obo:17480: Ser ==> Set
data/biojava-live-1.7.1/demos/files/ontology/biosapiens.obo:17481: Ser ==> Set
data/biojava-live-1.7.1/demos/files/ontology/biosapiens.obo:17839: Ser ==> Set
data/biojava-live-1.7.1/demos/files/ontology/biosapiens.obo:18343: ether ==> either
data/biojava-live-1.7.1/demos/files/ontology/biosapiens.obo:18346: ether ==> either
data/biojava-live-1.7.1/demos/files/ontology/biosapiens.obo:18936: ofthe ==> of the
data/biojava-live-1.7.1/demos/files/ontology/biosapiens.obo:19193: Ser ==> Set
data/biojava-live-1.7.1/demos/files/ontology/biosapiens.obo:20332: elminate ==> eliminate
data/biojava-live-1.7.1/demos/files/ontology/biosapiens.obo:21265: unfortunaltely ==> unfortunately
data/biojava-live-1.7.1/demos/files/ontology/biosapiens.obo:21313: unfortunaltely ==> unfortunately
data/biojava-live-1.7.1/demos/files/ontology/biosapiens.obo:21965: modifation ==> modification
data/biojava-live-1.7.1/demos/files/ontology/biosapiens.obo:23329: addtion ==> addition
data/biojava-live-1.7.1/demos/files/ontology/biosapiens.obo:23332: addtion ==> addition
data/biojava-live-1.7.1/demos/files/ontology/biosapiens.obo:23342: addtion ==> addition
data/biojava-live-1.7.1/demos/files/ontology/biosapiens.obo:23346: addtion ==> addition
data/biojava-live-1.7.1/demos/files/ontology/biosapiens.obo:23349: addtion ==> addition
data/biojava-live-1.7.1/demos/files/ontology/biosapiens.obo:23359: addtion ==> addition
data/biojava-live-1.7.1/demos/files/ontology/biosapiens.obo:23363: addtion ==> addition
data/biojava-live-1.7.1/demos/files/ontology/biosapiens.obo:23366: addtion ==> addition
data/biojava-live-1.7.1/demos/files/ontology/biosapiens.obo:23376: addtion ==> addition
data/biojava-live-1.7.1/demos/files/ontology/biosapiens.obo:23380: addtion ==> addition
data/biojava-live-1.7.1/demos/files/ontology/biosapiens.obo:23383: addtion ==> addition
data/biojava-live-1.7.1/demos/files/ontology/biosapiens.obo:23393: addtion ==> addition
data/biojava-live-1.7.1/demos/files/ontology/biosapiens.obo:23397: addtion ==> addition
data/biojava-live-1.7.1/demos/files/ontology/biosapiens.obo:23400: addtion ==> addition
data/biojava-live-1.7.1/demos/files/ontology/biosapiens.obo:23410: addtion ==> addition
data/biojava-live-1.7.1/demos/files/ontology/biosapiens.obo:23414: addtion ==> addition
data/biojava-live-1.7.1/demos/files/ontology/biosapiens.obo:23417: addtion ==> addition
data/biojava-live-1.7.1/demos/files/ontology/biosapiens.obo:23427: addtion ==> addition
data/biojava-live-1.7.1/demos/files/ontology/so.obo:997: occuring ==> occurring
data/biojava-live-1.7.1/demos/files/ontology/so.obo:998: Exapmles ==> Examples
data/biojava-live-1.7.1/demos/files/ontology/so.obo:1084: unvailable ==> unavailable
data/biojava-live-1.7.1/demos/files/ontology/so.obo:1165: occured ==> occurred
data/biojava-live-1.7.1/demos/files/ontology/so.obo:3669: occuring ==> occurring
data/biojava-live-1.7.1/demos/files/ontology/so.obo:5715: respose ==> response
data/biojava-live-1.7.1/demos/files/ontology/so.obo:5807: atrribute ==> attribute
data/biojava-live-1.7.1/demos/files/ontology/so.obo:5885: TE ==> THE, BE, WE
data/biojava-live-1.7.1/demos/files/ontology/so.obo:5885: TE ==> THE, BE, WE
data/biojava-live-1.7.1/demos/files/ontology/so.obo:5897: TE ==> THE, BE, WE
data/biojava-live-1.7.1/demos/files/ontology/so.obo:5906: TE ==> THE, BE, WE
data/biojava-live-1.7.1/demos/files/ontology/so.obo:6373: witht ==> with
data/biojava-live-1.7.1/demos/files/ontology/so.obo:6383: conjuction ==> conjunction
data/biojava-live-1.7.1/demos/files/ontology/so.obo:6403: occured ==> occurred
data/biojava-live-1.7.1/demos/files/ontology/so.obo:6409: occured ==> occurred
data/biojava-live-1.7.1/demos/files/ontology/so.obo:6485: diferent ==> different
data/biojava-live-1.7.1/demos/files/ontology/so.obo:7661: desribe ==> describe
data/biojava-live-1.7.1/demos/files/ontology/so.obo:8379: oposite ==> opposite
data/biojava-live-1.7.1/demos/files/ontology/so.obo:8389: oposite ==> opposite
data/biojava-live-1.7.1/demos/files/ontology/so.obo:8727: occuring ==> occurring
data/biojava-live-1.7.1/demos/files/ontology/so.obo:9035: BRE ==> BE, BRIE
data/biojava-live-1.7.1/demos/files/ontology/so.obo:9317: defintition ==> definition
data/biojava-live-1.7.1/demos/files/ontology/so.obo:10731: atrribute ==> attribute
data/biojava-live-1.7.1/demos/files/pdb/hmga_1.pdb:193: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/hmga_1.pdb:194: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/hmga_1.pdb:195: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/hmga_1.pdb:196: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/hmga_1.pdb:197: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/hmga_1.pdb:198: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/hmga_1.pdb:199: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/hmga_1.pdb:200: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/hmga_1.pdb:201: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/hmga_1.pdb:202: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/hmga_1.pdb:203: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/hmga_1.pdb:204: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/hmga_1.pdb:205: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/hmga_1.pdb:206: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/hmga_1.pdb:207: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/hmga_1.pdb:208: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/hmga_1.pdb:209: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/hmga_1.pdb:210: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/hmga_1.pdb:211: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/hmga_1.pdb:212: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/hmga_1.pdb:213: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/hmga_1.pdb:214: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/hmga_1.pdb:333: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/hmga_1.pdb:334: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/hmga_1.pdb:335: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/hmga_1.pdb:336: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/hmga_1.pdb:337: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/hmga_1.pdb:338: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/hmga_1.pdb:339: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/hmga_1.pdb:340: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/hmga_1.pdb:341: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/hmga_1.pdb:342: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/hmga_1.pdb:343: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/hmga_1.pdb:534: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/hmga_1.pdb:535: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/hmga_1.pdb:536: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/hmga_1.pdb:537: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/hmga_1.pdb:538: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/hmga_1.pdb:539: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/hmga_1.pdb:540: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/hmga_1.pdb:541: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/hmga_1.pdb:542: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/hmga_1.pdb:543: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/hmga_1.pdb:544: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/hmga_1.pdb:595: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/hmga_1.pdb:596: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/hmga_1.pdb:597: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/hmga_1.pdb:598: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/hmga_1.pdb:599: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/hmga_1.pdb:600: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/hmga_1.pdb:601: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/hmga_1.pdb:602: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/hmga_1.pdb:603: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/hmga_1.pdb:604: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/hmga_1.pdb:605: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/hmga_1.pdb:641: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/hmga_1.pdb:642: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/hmga_1.pdb:643: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/hmga_1.pdb:644: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/hmga_1.pdb:645: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/hmga_1.pdb:646: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/hmga_1.pdb:647: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/hmga_1.pdb:648: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/hmga_1.pdb:649: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/hmga_1.pdb:650: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/hmga_1.pdb:651: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/hmga_1.pdb:707: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/hmga_1.pdb:708: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/hmga_1.pdb:709: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/hmga_1.pdb:710: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/hmga_1.pdb:711: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/hmga_1.pdb:712: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/hmga_1.pdb:713: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/hmga_1.pdb:714: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/hmga_1.pdb:715: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/hmga_1.pdb:716: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/hmga_1.pdb:717: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/hmga_1.pdb:834: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/hmga_1.pdb:835: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/hmga_1.pdb:836: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/hmga_1.pdb:837: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/hmga_1.pdb:838: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/hmga_1.pdb:839: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/hmga_1.pdb:840: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/hmga_1.pdb:841: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/hmga_1.pdb:842: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/hmga_1.pdb:843: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/hmga_1.pdb:844: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/tnf.pdb:62: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/tnf.pdb:62: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/tnf.pdb:62: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/tnf.pdb:62: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/tnf.pdb:65: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/tnf.pdb:66: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/tnf.pdb:67: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/tnf.pdb:68: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/tnf.pdb:68: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/tnf.pdb:69: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/tnf.pdb:69: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/tnf.pdb:72: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/tnf.pdb:73: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/tnf.pdb:75: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/tnf.pdb:75: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/tnf.pdb:75: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/tnf.pdb:75: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/tnf.pdb:78: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/tnf.pdb:79: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/tnf.pdb:80: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/tnf.pdb:81: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/tnf.pdb:81: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/tnf.pdb:82: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/tnf.pdb:82: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/tnf.pdb:85: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/tnf.pdb:86: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/tnf.pdb:88: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/tnf.pdb:88: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/tnf.pdb:88: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/tnf.pdb:88: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/tnf.pdb:91: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/tnf.pdb:92: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/tnf.pdb:93: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/tnf.pdb:94: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/tnf.pdb:94: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/tnf.pdb:95: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/tnf.pdb:95: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/tnf.pdb:98: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/tnf.pdb:99: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/tnf.pdb:176: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/tnf.pdb:177: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/tnf.pdb:178: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/tnf.pdb:179: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/tnf.pdb:180: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/tnf.pdb:181: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/tnf.pdb:507: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/tnf.pdb:508: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/tnf.pdb:509: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/tnf.pdb:510: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/tnf.pdb:511: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/tnf.pdb:512: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/tnf.pdb:574: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/tnf.pdb:575: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/tnf.pdb:576: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/tnf.pdb:577: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/tnf.pdb:578: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/tnf.pdb:579: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/tnf.pdb:654: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/tnf.pdb:655: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/tnf.pdb:656: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/tnf.pdb:657: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/tnf.pdb:658: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/tnf.pdb:659: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/tnf.pdb:732: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/tnf.pdb:733: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/tnf.pdb:734: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/tnf.pdb:735: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/tnf.pdb:736: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/tnf.pdb:737: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/tnf.pdb:769: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/tnf.pdb:770: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/tnf.pdb:771: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/tnf.pdb:772: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/tnf.pdb:773: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/tnf.pdb:774: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/tnf.pdb:843: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/tnf.pdb:844: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/tnf.pdb:845: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/tnf.pdb:846: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/tnf.pdb:847: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/tnf.pdb:848: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/tnf.pdb:871: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/tnf.pdb:872: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/tnf.pdb:873: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/tnf.pdb:874: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/tnf.pdb:875: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/tnf.pdb:876: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/tnf.pdb:1143: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/tnf.pdb:1144: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/tnf.pdb:1145: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/tnf.pdb:1146: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/tnf.pdb:1147: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/tnf.pdb:1148: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/tnf.pdb:1258: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/tnf.pdb:1259: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/tnf.pdb:1260: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/tnf.pdb:1261: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/tnf.pdb:1262: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/tnf.pdb:1263: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/tnf.pdb:1361: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/tnf.pdb:1362: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/tnf.pdb:1363: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/tnf.pdb:1364: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/tnf.pdb:1365: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/tnf.pdb:1366: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/tnf.pdb:1692: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/tnf.pdb:1693: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/tnf.pdb:1694: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/tnf.pdb:1695: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/tnf.pdb:1696: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/tnf.pdb:1697: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/tnf.pdb:1759: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/tnf.pdb:1760: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/tnf.pdb:1761: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/tnf.pdb:1762: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/tnf.pdb:1763: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/tnf.pdb:1764: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/tnf.pdb:1839: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/tnf.pdb:1840: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/tnf.pdb:1841: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/tnf.pdb:1842: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/tnf.pdb:1843: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/tnf.pdb:1844: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/tnf.pdb:1917: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/tnf.pdb:1918: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/tnf.pdb:1919: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/tnf.pdb:1920: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/tnf.pdb:1921: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/tnf.pdb:1922: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/tnf.pdb:1954: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/tnf.pdb:1955: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/tnf.pdb:1956: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/tnf.pdb:1957: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/tnf.pdb:1958: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/tnf.pdb:1959: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/tnf.pdb:2028: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/tnf.pdb:2029: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/tnf.pdb:2030: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/tnf.pdb:2031: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/tnf.pdb:2032: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/tnf.pdb:2033: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/tnf.pdb:2056: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/tnf.pdb:2057: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/tnf.pdb:2058: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/tnf.pdb:2059: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/tnf.pdb:2060: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/tnf.pdb:2061: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/tnf.pdb:2328: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/tnf.pdb:2329: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/tnf.pdb:2330: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/tnf.pdb:2331: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/tnf.pdb:2332: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/tnf.pdb:2333: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/tnf.pdb:2443: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/tnf.pdb:2444: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/tnf.pdb:2445: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/tnf.pdb:2446: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/tnf.pdb:2447: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/tnf.pdb:2448: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/tnf.pdb:2546: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/tnf.pdb:2547: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/tnf.pdb:2548: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/tnf.pdb:2549: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/tnf.pdb:2550: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/tnf.pdb:2551: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/tnf.pdb:2877: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/tnf.pdb:2878: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/tnf.pdb:2879: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/tnf.pdb:2880: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/tnf.pdb:2881: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/tnf.pdb:2882: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/tnf.pdb:2944: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/tnf.pdb:2945: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/tnf.pdb:2946: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/tnf.pdb:2947: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/tnf.pdb:2948: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/tnf.pdb:2949: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/tnf.pdb:3024: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/tnf.pdb:3025: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/tnf.pdb:3026: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/tnf.pdb:3027: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/tnf.pdb:3028: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/tnf.pdb:3029: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/tnf.pdb:3102: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/tnf.pdb:3103: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/tnf.pdb:3104: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/tnf.pdb:3105: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/tnf.pdb:3106: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/tnf.pdb:3107: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/tnf.pdb:3139: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/tnf.pdb:3140: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/tnf.pdb:3141: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/tnf.pdb:3142: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/tnf.pdb:3143: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/tnf.pdb:3144: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/tnf.pdb:3213: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/tnf.pdb:3214: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/tnf.pdb:3215: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/tnf.pdb:3216: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/tnf.pdb:3217: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/tnf.pdb:3218: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/tnf.pdb:3241: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/tnf.pdb:3242: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/tnf.pdb:3243: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/tnf.pdb:3244: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/tnf.pdb:3245: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/tnf.pdb:3246: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/tnf.pdb:3513: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/tnf.pdb:3514: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/tnf.pdb:3515: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/tnf.pdb:3516: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/tnf.pdb:3517: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/tnf.pdb:3518: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/tnf.pdb:3628: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/tnf.pdb:3629: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/tnf.pdb:3630: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/tnf.pdb:3631: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/tnf.pdb:3632: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/tnf.pdb:3633: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/tnf.pdb:3712: CONECT ==> CONNECT
data/biojava-live-1.7.1/demos/files/pdb/tnf.pdb:3713: CONECT ==> CONNECT
data/biojava-live-1.7.1/demos/files/pdb/tnf.pdb:3714: CONECT ==> CONNECT
data/biojava-live-1.7.1/demos/files/pdb/tnf.pdb:3715: CONECT ==> CONNECT
data/biojava-live-1.7.1/demos/files/pdb/tnf.pdb:3716: CONECT ==> CONNECT
data/biojava-live-1.7.1/demos/files/pdb/tnf.pdb:3717: CONECT ==> CONNECT
data/biojava-live-1.7.1/demos/files/pdb/hgh_ori.pdb:52: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/hgh_ori.pdb:53: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/hgh_ori.pdb:54: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/hgh_ori.pdb:55: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/hgh_ori.pdb:56: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/hgh_ori.pdb:57: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/hgh_ori.pdb:58: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/hgh_ori.pdb:402: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/hgh_ori.pdb:403: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/hgh_ori.pdb:404: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/hgh_ori.pdb:405: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/hgh_ori.pdb:406: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/hgh_ori.pdb:407: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/hgh_ori.pdb:408: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/hgh_ori.pdb:474: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/hgh_ori.pdb:475: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/hgh_ori.pdb:476: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/hgh_ori.pdb:477: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/hgh_ori.pdb:478: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/hgh_ori.pdb:479: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/hgh_ori.pdb:480: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/hgh_ori.pdb:509: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/hgh_ori.pdb:510: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/hgh_ori.pdb:511: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/hgh_ori.pdb:512: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/hgh_ori.pdb:513: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/hgh_ori.pdb:514: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/hgh_ori.pdb:515: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/hgh_ori.pdb:526: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/hgh_ori.pdb:527: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/hgh_ori.pdb:528: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/hgh_ori.pdb:529: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/hgh_ori.pdb:530: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/hgh_ori.pdb:531: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/hgh_ori.pdb:532: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/hgh_ori.pdb:564: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/hgh_ori.pdb:565: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/hgh_ori.pdb:566: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/hgh_ori.pdb:567: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/hgh_ori.pdb:568: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/hgh_ori.pdb:569: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/hgh_ori.pdb:570: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/hgh_ori.pdb:650: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/hgh_ori.pdb:651: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/hgh_ori.pdb:652: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/hgh_ori.pdb:653: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/hgh_ori.pdb:654: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/hgh_ori.pdb:655: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/hgh_ori.pdb:656: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/hgh_ori.pdb:724: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/hgh_ori.pdb:725: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/hgh_ori.pdb:726: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/hgh_ori.pdb:727: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/hgh_ori.pdb:728: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/hgh_ori.pdb:729: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/hgh_ori.pdb:730: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/hgh_ori.pdb:777: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/hgh_ori.pdb:778: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/hgh_ori.pdb:779: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/hgh_ori.pdb:780: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/hgh_ori.pdb:781: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/hgh_ori.pdb:782: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/hgh_ori.pdb:783: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/hgh_ori.pdb:876: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/hgh_ori.pdb:877: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/hgh_ori.pdb:878: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/hgh_ori.pdb:879: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/hgh_ori.pdb:880: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/hgh_ori.pdb:881: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/hgh_ori.pdb:882: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/hgh_ori.pdb:918: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/hgh_ori.pdb:919: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/hgh_ori.pdb:920: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/hgh_ori.pdb:921: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/hgh_ori.pdb:922: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/hgh_ori.pdb:923: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/hgh_ori.pdb:924: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/hgh_ori.pdb:966: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/hgh_ori.pdb:967: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/hgh_ori.pdb:968: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/hgh_ori.pdb:969: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/hgh_ori.pdb:970: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/hgh_ori.pdb:971: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/hgh_ori.pdb:972: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/hgh_ori.pdb:982: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/hgh_ori.pdb:983: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/hgh_ori.pdb:984: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/hgh_ori.pdb:985: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/hgh_ori.pdb:986: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/hgh_ori.pdb:987: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/hgh_ori.pdb:988: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/hgh_ori.pdb:1194: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/hgh_ori.pdb:1195: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/hgh_ori.pdb:1196: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/hgh_ori.pdb:1197: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/hgh_ori.pdb:1198: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/hgh_ori.pdb:1199: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/hgh_ori.pdb:1200: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/hgh_ori.pdb:1290: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/hgh_ori.pdb:1291: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/hgh_ori.pdb:1292: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/hgh_ori.pdb:1293: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/hgh_ori.pdb:1294: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/hgh_ori.pdb:1295: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/hgh_ori.pdb:1604: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/hgh_ori.pdb:1605: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/hgh_ori.pdb:1606: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/hgh_ori.pdb:1607: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/hgh_ori.pdb:1608: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/hgh_ori.pdb:1609: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/hgh_ori.pdb:1610: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/hgh_ori.pdb:1634: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/hgh_ori.pdb:1635: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/hgh_ori.pdb:1636: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/hgh_ori.pdb:1637: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/hgh_ori.pdb:1638: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/hgh_ori.pdb:1639: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/hgh_ori.pdb:1640: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:260: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:260: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:261: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:261: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:261: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:263: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:263: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:263: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:264: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:265: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:265: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:266: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:267: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:267: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:268: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:269: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:269: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:269: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:270: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:271: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:272: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:272: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:273: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:273: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:273: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:273: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:274: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:275: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:275: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:275: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:277: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:278: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:278: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:278: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:278: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:282: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:282: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:283: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:283: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:283: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:286: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:286: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:287: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:287: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:289: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:289: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:289: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:289: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:290: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:291: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:291: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:291: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:291: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:291: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:292: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:293: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:293: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:294: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:294: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:295: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:295: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:295: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:297: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:297: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:297: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:298: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:299: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:299: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:300: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:301: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:301: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:302: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:303: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:303: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:303: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:304: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:305: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:306: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:306: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:307: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:307: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:307: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:307: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:308: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:309: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:309: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:309: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:311: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:312: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:312: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:312: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:312: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:316: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:316: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:317: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:317: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:317: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:320: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:320: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:321: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:321: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:323: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:323: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:323: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:323: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:324: SER ==> SET
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data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:325: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:325: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:325: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:325: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:326: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:327: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:327: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:329: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:330: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:330: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:334: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:336: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:337: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:338: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:339: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:339: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:343: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:345: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:350: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:350: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:357: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:357: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:359: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:362: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:362: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:366: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:371: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:372: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:374: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:384: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:384: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:391: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:391: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:392: SER ==> SET
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data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:397: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:397: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:401: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:406: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:407: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:409: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:499: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:500: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:501: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:502: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:503: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:504: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:542: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:543: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:544: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:545: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:546: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:547: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:555: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:556: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:557: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:558: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:559: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:560: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:598: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:599: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:600: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:601: SER ==> SET
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data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:603: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:639: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:640: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:641: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:642: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:643: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:644: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:770: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:771: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:772: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:773: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:774: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:775: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:828: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:829: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:830: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:831: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:832: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:833: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:839: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:840: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:841: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:842: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:843: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:844: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:942: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:943: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:944: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:945: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:946: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:947: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:952: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:953: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:954: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:955: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:956: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:957: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:1018: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:1019: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:1020: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:1021: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:1022: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:1023: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:1049: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:1050: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:1051: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:1052: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:1053: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:1054: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:1152: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:1153: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:1154: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:1155: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:1156: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:1157: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:1158: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:1159: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:1160: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:1161: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:1162: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:1163: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:1327: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:1328: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:1329: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:1330: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:1331: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:1332: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:1366: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:1367: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:1368: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:1369: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:1370: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:1371: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:1372: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:1373: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:1374: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:1375: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:1376: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:1377: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:1411: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:1412: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:1413: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:1414: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:1415: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:1416: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:1430: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:1431: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:1432: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:1433: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:1434: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:1435: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:1613: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:1614: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:1615: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:1616: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:1617: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:1618: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:1683: SER ==> SET
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data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:1792: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:1793: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:1794: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:1795: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:1796: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:1797: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:1798: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:1799: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:1913: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:1914: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:1915: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:1916: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:1917: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:1918: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:1991: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:1992: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:1993: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:1994: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:1995: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:1996: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:2004: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:2005: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:2006: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:2007: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:2008: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:2009: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:2041: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:2042: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:2043: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:2044: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:2045: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:2046: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:2153: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:2154: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:2155: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:2156: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:2157: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:2158: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:2202: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:2203: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:2204: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:2205: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:2206: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:2207: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:2217: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:2218: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:2219: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:2220: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:2221: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:2222: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:2247: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:2248: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:2249: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:2250: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:2251: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:2252: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:2271: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:2272: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:2273: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:2274: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:2275: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:2276: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:2686: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:2687: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:2688: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:2689: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:2690: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:2691: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:2692: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:2693: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:2694: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:2695: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:2696: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:2697: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:2755: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:2756: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:2757: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:2758: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:2759: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:2760: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:2761: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:2762: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:2763: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:2764: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:2765: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:2766: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:2782: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:2783: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:2784: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:2785: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:2786: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:2787: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:3032: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:3033: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:3034: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:3035: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:3036: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:3037: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:3085: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:3086: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:3087: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:3088: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:3089: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:3090: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:3141: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:3142: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:3143: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:3144: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:3145: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:3146: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:3181: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:3182: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:3183: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:3184: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:3185: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:3186: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:3351: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:3352: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:3353: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:3354: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:3355: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:3356: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:3361: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:3362: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:3363: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:3364: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:3365: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:3366: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:3375: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:3376: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:3377: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:3378: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:3379: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:3380: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:3381: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:3382: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:3383: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:3384: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:3385: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:3386: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:3462: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:3463: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:3464: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:3465: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:3466: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:3467: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:3511: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:3512: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:3513: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:3514: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:3515: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:3516: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:3517: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:3518: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:3519: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:3520: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:3521: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:3522: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:3523: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:3524: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:3525: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:3526: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:3527: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:3528: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:3557: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:3558: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:3559: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:3560: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:3561: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:3562: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:3563: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:3564: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:3565: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:3566: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:3567: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:3568: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:3597: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:3598: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:3599: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:3600: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:3601: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:3602: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:3681: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:3682: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:3683: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:3684: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:3685: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:3686: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:3687: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:3688: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:3689: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:3690: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:3691: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:3692: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:3832: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:3833: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:3834: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:3835: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:3836: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:3837: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:3875: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:3876: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:3877: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:3878: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:3879: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:3880: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:3888: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:3889: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:3890: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:3891: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:3892: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:3893: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:3931: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:3932: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:3933: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:3934: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:3935: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:3936: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:3972: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:3973: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:3974: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:3975: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:3976: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:3977: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:4103: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:4104: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:4105: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:4106: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:4107: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:4108: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:4161: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:4162: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:4163: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:4164: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:4165: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:4166: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:4172: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:4173: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:4174: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:4175: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:4176: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:4177: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:4275: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:4276: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:4277: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:4278: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:4279: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:4280: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:4285: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:4286: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:4287: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:4288: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:4289: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:4290: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:4351: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:4352: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:4353: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:4354: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:4355: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:4356: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:4382: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:4383: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:4384: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:4385: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:4386: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:4387: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:4485: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:4486: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:4487: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:4488: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:4489: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:4490: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:4491: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:4492: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:4493: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:4494: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:4495: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:4496: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:4660: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:4661: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:4662: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:4663: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:4664: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:4665: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:4699: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:4700: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:4701: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:4702: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:4703: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:4704: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:4705: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:4706: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:4707: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:4708: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:4709: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:4710: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:4744: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:4745: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:4746: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:4747: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:4748: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:4749: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:4763: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:4764: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:4765: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:4766: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:4767: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:4768: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:4946: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:4947: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:4948: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:4949: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:4950: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:4951: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:5016: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:5017: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:5018: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:5019: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:5020: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:5021: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:5059: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:5060: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:5061: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:5062: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:5063: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:5064: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:5082: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:5083: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:5084: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:5085: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:5086: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:5087: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:5107: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:5108: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:5109: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:5110: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:5111: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:5112: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:5121: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:5122: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:5123: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:5124: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:5125: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:5126: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:5127: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:5128: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:5129: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:5130: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:5131: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:5132: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:5246: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:5247: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:5248: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:5249: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:5250: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:5251: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:5324: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:5325: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:5326: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:5327: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:5328: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:5329: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:5337: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:5338: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:5339: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:5340: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:5341: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:5342: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:5374: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:5375: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:5376: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:5377: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:5378: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:5379: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:5486: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:5487: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:5488: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:5489: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:5490: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:5491: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:5535: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:5536: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:5537: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:5538: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:5539: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:5540: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:5550: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:5551: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:5552: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:5553: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:5554: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:5555: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:5580: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:5581: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:5582: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:5583: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:5584: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:5585: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:5604: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:5605: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:5606: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:5607: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:5608: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:5609: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:6019: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:6020: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:6021: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:6022: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:6023: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:6024: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:6025: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:6026: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:6027: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:6028: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:6029: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:6030: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:6088: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:6089: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:6090: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:6091: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:6092: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:6093: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:6094: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:6095: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:6096: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:6097: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:6098: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:6099: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:6115: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:6116: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:6117: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:6118: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:6119: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:6120: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:6365: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:6366: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:6367: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:6368: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:6369: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:6370: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:6418: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:6419: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:6420: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:6421: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:6422: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:6423: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:6474: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:6475: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:6476: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:6477: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:6478: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:6479: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:6514: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:6515: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:6516: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:6517: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:6518: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:6519: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:6684: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:6685: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:6686: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:6687: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:6688: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:6689: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:6694: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:6695: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:6696: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:6697: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:6698: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:6699: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:6708: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:6709: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:6710: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:6711: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:6712: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:6713: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:6714: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:6715: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:6716: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:6717: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:6718: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:6719: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:6795: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:6796: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:6797: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:6798: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:6799: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:6800: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:6844: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:6845: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:6846: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:6847: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:6848: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:6849: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:6850: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:6851: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:6852: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:6853: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:6854: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:6855: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:6856: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:6857: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:6858: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:6859: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:6860: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:6861: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:6890: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:6891: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:6892: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:6893: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:6894: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:6895: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:6896: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:6897: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:6898: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:6899: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:6900: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:6901: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:6930: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:6931: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:6932: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:6933: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:6934: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:6935: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:7014: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:7015: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:7016: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:7017: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:7018: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:7019: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:7020: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:7021: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:7022: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:7023: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:7024: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:7025: SER ==> SET
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:7885: CONECT ==> CONNECT
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:7886: CONECT ==> CONNECT
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:7887: CONECT ==> CONNECT
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:7888: CONECT ==> CONNECT
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:7889: CONECT ==> CONNECT
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:7890: CONECT ==> CONNECT
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:7891: CONECT ==> CONNECT
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:7892: CONECT ==> CONNECT
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:7893: CONECT ==> CONNECT
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:7894: CONECT ==> CONNECT
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:7895: CONECT ==> CONNECT
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:7896: CONECT ==> CONNECT
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:7897: CONECT ==> CONNECT
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:7898: CONECT ==> CONNECT
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:7899: CONECT ==> CONNECT
data/biojava-live-1.7.1/demos/files/pdb/12E8.pdb:7900: CONECT ==> CONNECT
data/biojava-live-1.7.1/demos/files/wublast/tblastx.out:322: supressor ==> suppressor
data/biojava-live-1.7.1/demos/files/wublast/tblastx.out:518: fo ==> of, for
data/biojava-live-1.7.1/demos/files/wublast/tblastx.out:3213: ALS ==> ALSO
data/biojava-live-1.7.1/demos/files/wublast/tblastx.out:3636: EDE ==> EDGE
data/biojava-live-1.7.1/demos/files/wublast/tblastx.out:4075: EDE ==> EDGE
data/biojava-live-1.7.1/demos/files/wublast/tblastx.out:4082: EDE ==> EDGE
data/biojava-live-1.7.1/demos/files/wublast/tblastx.out:4810: ALS ==> ALSO
data/biojava-live-1.7.1/demos/files/wublast/tblastx.out:5657: ALS ==> ALSO
data/biojava-live-1.7.1/demos/files/wublast/tblastx.out:5811: TE ==> THE, BE, WE
data/biojava-live-1.7.1/demos/files/wublast/tblastx.out:6505: DED ==> DEAD
data/biojava-live-1.7.1/demos/files/wublast/tblastx.out:6552: DED ==> DEAD
data/biojava-live-1.7.1/demos/files/wublast/tblastx.out:6846: EDE ==> EDGE
data/biojava-live-1.7.1/demos/files/wublast/tblastx.out:7550: EDE ==> EDGE
data/biojava-live-1.7.1/demos/files/wublast/tblastx.out:8092: EDE ==> EDGE
data/biojava-live-1.7.1/demos/files/wublast/tblastx.out:8099: EDE ==> EDGE
data/biojava-live-1.7.1/demos/files/wublast/tblastx.out:8106: EDE ==> EDGE
data/biojava-live-1.7.1/demos/files/wublast/tblastx.out:13411: EDE ==> EDGE
data/biojava-live-1.7.1/demos/files/wublast/tblastx.out:14108: EDE ==> EDGE
data/biojava-live-1.7.1/demos/files/wublast/tblastx.out:14220: EDE ==> EDGE
data/biojava-live-1.7.1/demos/files/wublast/tblastx.out:14227: EDE ==> EDGE
data/biojava-live-1.7.1/demos/files/wublast/tblastx.out:14234: EDE ==> EDGE
data/biojava-live-1.7.1/demos/files/wublast/tblastx.out:14262: EDE ==> EDGE
data/biojava-live-1.7.1/demos/files/wublast/tblastx.out:14311: EDE ==> EDGE
data/biojava-live-1.7.1/demos/files/wublast/tblastx.out:14311: EDE ==> EDGE
data/biojava-live-1.7.1/demos/files/wublast/tblastx.out:14318: EDE ==> EDGE
data/biojava-live-1.7.1/demos/files/wublast/tblastx.out:14350: EDE ==> EDGE
data/biojava-live-1.7.1/demos/files/wublast/tblastx.out:14364: EDE ==> EDGE
data/biojava-live-1.7.1/demos/files/wublast/tblastx.out:14371: EDE ==> EDGE
data/biojava-live-1.7.1/demos/files/wublast/tblastx.out:15558: DED ==> DEAD
data/biojava-live-1.7.1/demos/files/wublast/tblastx.out:15609: DED ==> DEAD
data/biojava-live-1.7.1/demos/files/wublast/tblastx.out:16151: DED ==> DEAD
data/biojava-live-1.7.1/demos/files/wublast/tblastx.out:16198: DED ==> DEAD
data/biojava-live-1.7.1/demos/files/wublast/tblastx.out:17762: DED ==> DEAD
data/biojava-live-1.7.1/demos/files/wublast/tblastx.out:17996: EDE ==> EDGE
data/biojava-live-1.7.1/demos/files/wublast/tblastx.out:19155: EDE ==> EDGE
data/biojava-live-1.7.1/demos/files/wublast/tblastx.out:21238: EDE ==> EDGE
data/biojava-live-1.7.1/demos/files/wublast/tblastx.out:21252: EDE ==> EDGE
data/biojava-live-1.7.1/demos/files/wublast/tblastx.out:21595: EDE ==> EDGE
data/biojava-live-1.7.1/demos/files/wublast/tblastx.out:22297: EDE ==> EDGE
data/biojava-live-1.7.1/demos/files/wublast/tblastx.out:22297: EDE ==> EDGE
data/biojava-live-1.7.1/demos/files/wublast/tblastx.out:22368: EDE ==> EDGE
data/biojava-live-1.7.1/demos/files/wublast/tblastx.out:22368: EDE ==> EDGE
data/biojava-live-1.7.1/demos/files/wublast/tblastx.out:22623: EDE ==> EDGE
data/biojava-live-1.7.1/demos/files/wublast/tblastx.out:22630: EDE ==> EDGE
data/biojava-live-1.7.1/demos/files/wublast/tblastx.out:22630: EDE ==> EDGE
data/biojava-live-1.7.1/demos/files/wublast/tblastx.out:22630: EDE ==> EDGE
data/biojava-live-1.7.1/demos/files/wublast/tblastx.out:22641: EDE ==> EDGE
data/biojava-live-1.7.1/demos/files/wublast/tblastx.out:22677: DED ==> DEAD
data/biojava-live-1.7.1/demos/files/wublast/tblastx.out:22719: DED ==> DEAD
data/biojava-live-1.7.1/demos/files/wublast/tblastx.out:23214: EDE ==> EDGE
data/biojava-live-1.7.1/demos/files/wublast/tblastx.out:23221: EDE ==> EDGE
data/biojava-live-1.7.1/demos/files/wublast/tblastx.out:23221: EDE ==> EDGE
data/biojava-live-1.7.1/demos/files/wublast/tblastx.out:23221: EDE ==> EDGE
data/biojava-live-1.7.1/demos/files/wublast/tblastx.out:23232: EDE ==> EDGE
data/biojava-live-1.7.1/demos/files/wublast/tblastx.out:23261: EDE ==> EDGE
data/biojava-live-1.7.1/demos/files/wublast/tblastx.out:23268: EDE ==> EDGE
data/biojava-live-1.7.1/demos/files/wublast/tblastx.out:23268: EDE ==> EDGE
data/biojava-live-1.7.1/demos/files/wublast/tblastx.out:23268: EDE ==> EDGE
data/biojava-live-1.7.1/demos/files/wublast/tblastx.out:23279: EDE ==> EDGE
data/biojava-live-1.7.1/demos/files/wublast/tblastx.out:23541: EDE ==> EDGE
data/biojava-live-1.7.1/demos/files/wublast/tblastx.out:23597: EDE ==> EDGE
data/biojava-live-1.7.1/demos/files/wublast/tblastx.out:23816: DED ==> DEAD
data/biojava-live-1.7.1/demos/files/wublast/tblastx.out:23858: DED ==> DEAD
data/biojava-live-1.7.1/demos/files/wublast/tblastx.out:25819: EDE ==> EDGE
data/biojava-live-1.7.1/demos/files/wublast/tblastx.out:25819: EDE ==> EDGE
data/biojava-live-1.7.1/demos/files/wublast/tblastx.out:26441: EDE ==> EDGE
data/biojava-live-1.7.1/demos/files/wublast/tblastx.out:26455: EDE ==> EDGE
data/biojava-live-1.7.1/demos/files/wublast/tblastx.out:26462: EDE ==> EDGE
data/biojava-live-1.7.1/demos/files/wublast/tblastx.out:26462: EDE ==> EDGE
data/biojava-live-1.7.1/demos/files/wublast/tblastx.out:26469: EDE ==> EDGE
data/biojava-live-1.7.1/demos/files/wublast/tblastx.out:27178: EDE ==> EDGE
data/biojava-live-1.7.1/demos/files/wublast/tblastx.out:28452: EDE ==> EDGE
data/biojava-live-1.7.1/demos/files/wublast/tblastx.out:28480: EDE ==> EDGE
data/biojava-live-1.7.1/demos/files/wublast/tblastx.out:28487: EDE ==> EDGE
data/biojava-live-1.7.1/demos/files/wublast/blastp.out:158: TE ==> THE, BE, WE
data/biojava-live-1.7.1/demos/files/wublast/blastp.out:164: TE ==> THE, BE, WE
data/biojava-live-1.7.1/demos/files/wublast/blastp.out:191: TE ==> THE, BE, WE
data/biojava-live-1.7.1/demos/files/wublast/blastp.out:206: TE ==> THE, BE, WE
data/biojava-live-1.7.1/demos/files/wublast/blastp.out:207: TE ==> THE, BE, WE
data/biojava-live-1.7.1/demos/files/wublast/blastp.out:231: TE ==> THE, BE, WE
data/biojava-live-1.7.1/demos/files/wublast/blastp.out:237: TE ==> THE, BE, WE
data/biojava-live-1.7.1/demos/files/wublast/blastp.out:238: TE ==> THE, BE, WE
data/biojava-live-1.7.1/demos/files/wublast/blastp.out:283: IIF ==> IF
data/biojava-live-1.7.1/demos/files/wublast/blastp.out:289: TE ==> THE, BE, WE
data/biojava-live-1.7.1/demos/files/wublast/blastp.out:291: TE ==> THE, BE, WE
data/biojava-live-1.7.1/demos/files/wublast/blastp.out:296: TE ==> THE, BE, WE
data/biojava-live-1.7.1/demos/files/wublast/blastp.out:307: TE ==> THE, BE, WE
data/biojava-live-1.7.1/demos/files/wublast/blastp.out:309: TE ==> THE, BE, WE
data/biojava-live-1.7.1/demos/files/wublast/blastp.out:324: TE ==> THE, BE, WE
data/biojava-live-1.7.1/demos/files/wublast/blastp.out:326: TE ==> THE, BE, WE
data/biojava-live-1.7.1/demos/files/wublast/blastp.out:328: NEGATIV ==> NEGATIVE
data/biojava-live-1.7.1/demos/files/wublast/blastp.out:353: TE ==> THE, BE, WE
data/biojava-live-1.7.1/demos/files/wublast/blastp.out:386: TE ==> THE, BE, WE
data/biojava-live-1.7.1/demos/files/wublast/blastp.out:403: TE ==> THE, BE, WE
data/biojava-live-1.7.1/demos/files/wublast/blastp.out:478: IIF ==> IF
data/biojava-live-1.7.1/demos/files/wublast/blastp.out:749: EDE ==> EDGE
data/biojava-live-1.7.1/demos/files/wublast/blastp.out:768: EDE ==> EDGE
data/biojava-live-1.7.1/demos/files/wublast/blastp.out:810: EDE ==> EDGE
data/biojava-live-1.7.1/demos/files/wublast/blastp.out:829: EDE ==> EDGE
data/biojava-live-1.7.1/demos/files/wublast/blastp.out:1031: DED ==> DEAD
data/biojava-live-1.7.1/demos/files/wublast/blastp.out:1404: EDE ==> EDGE
data/biojava-live-1.7.1/demos/files/wublast/blastp.out:1422: EDE ==> EDGE
data/biojava-live-1.7.1/demos/files/wublast/blastp.out:1654: EDE ==> EDGE
data/biojava-live-1.7.1/demos/files/wublast/blastp.out:1996: EDE ==> EDGE
data/biojava-live-1.7.1/demos/files/wublast/blastp.out:2015: EDE ==> EDGE
data/biojava-live-1.7.1/demos/files/wublast/blastp.out:2034: EDE ==> EDGE
data/biojava-live-1.7.1/demos/files/wublast/blastp.out:2163: EDE ==> EDGE
data/biojava-live-1.7.1/demos/files/wublast/blastp.out:2185: EDE ==> EDGE
data/biojava-live-1.7.1/demos/files/wublast/blastp.out:2696: EDE ==> EDGE
data/biojava-live-1.7.1/demos/files/wublast/blastp.out:2707: EDE ==> EDGE
data/biojava-live-1.7.1/demos/files/wublast/blastp.out:2737: EDE ==> EDGE
data/biojava-live-1.7.1/demos/files/wublast/blastp.out:2845: DED ==> DEAD
data/biojava-live-1.7.1/demos/files/wublast/blastp.out:2913: DED ==> DEAD
data/biojava-live-1.7.1/demos/files/wublast/blastp.out:2920: DED ==> DEAD
data/biojava-live-1.7.1/demos/files/wublast/blastp.out:2938: DED ==> DEAD
data/biojava-live-1.7.1/demos/files/wublast/blastp.out:2963: EDE ==> EDGE
data/biojava-live-1.7.1/demos/files/wublast/blastp.out:3136: EDE ==> EDGE
data/biojava-live-1.7.1/demos/files/wublast/blastp.out:3181: DED ==> DEAD
data/biojava-live-1.7.1/demos/files/wublast/blastp.out:3293: EDE ==> EDGE
data/biojava-live-1.7.1/demos/files/wublast/blastp.out:3304: EDE ==> EDGE
data/biojava-live-1.7.1/demos/files/wublast/blastp.out:3697: EDE ==> EDGE
data/biojava-live-1.7.1/demos/files/wublast/blastp.out:3715: EDE ==> EDGE
data/biojava-live-1.7.1/demos/files/wublast/blastp.out:3729: EDE ==> EDGE
data/biojava-live-1.7.1/demos/files/wublast/blastp.out:3863: EDE ==> EDGE
data/biojava-live-1.7.1/demos/files/wublast/blastp.out:4767: EDE ==> EDGE
data/biojava-live-1.7.1/demos/files/wublast/blastp.out:4829: EDE ==> EDGE
data/biojava-live-1.7.1/demos/files/wublast/blastp.out:4876: EDE ==> EDGE
data/biojava-live-1.7.1/demos/files/wublast/blastp.out:4883: EDE ==> EDGE
data/biojava-live-1.7.1/demos/files/wublast/blastp.out:4890: EDE ==> EDGE
data/biojava-live-1.7.1/demos/files/wublast/blastp.out:4897: EDE ==> EDGE
data/biojava-live-1.7.1/demos/files/wublast/blastp.out:4904: EDE ==> EDGE
data/biojava-live-1.7.1/demos/files/wublast/blastp.out:4959: EDE ==> EDGE
data/biojava-live-1.7.1/demos/files/wublast/blastp.out:5204: LKE ==> LIKE
data/biojava-live-1.7.1/demos/files/wublast/blastp.out:5329: EDE ==> EDGE
data/biojava-live-1.7.1/demos/files/wublast/blastp.out:5368: EDE ==> EDGE
data/biojava-live-1.7.1/demos/files/wublast/blastp.out:5368: EDE ==> EDGE
data/biojava-live-1.7.1/demos/files/wublast/blastp.out:5413: EDE ==> EDGE
data/biojava-live-1.7.1/demos/files/wublast/blastp.out:5420: EDE ==> EDGE
data/biojava-live-1.7.1/demos/files/wublast/blastp.out:5481: EDE ==> EDGE
data/biojava-live-1.7.1/demos/files/wublast/blastp.out:5578: EDE ==> EDGE
data/biojava-live-1.7.1/demos/files/wublast/blastp.out:5589: EDE ==> EDGE
data/biojava-live-1.7.1/demos/files/wublast/blastp.out:5600: EDE ==> EDGE
data/biojava-live-1.7.1/demos/files/wublast/blastp.out:5636: EDE ==> EDGE
data/biojava-live-1.7.1/demos/files/wublast/blastp.out:5636: EDE ==> EDGE
data/biojava-live-1.7.1/demos/files/wublast/blastp.out:5640: DED ==> DEAD
data/biojava-live-1.7.1/demos/files/wublast/blastp.out:5654: EDE ==> EDGE
data/biojava-live-1.7.1/demos/files/wublast/blastp.out:5826: EDE ==> EDGE
data/biojava-live-1.7.1/demos/files/wublast/blastp.out:5837: EDE ==> EDGE
data/biojava-live-1.7.1/demos/files/wublast/blastp.out:5914: EDE ==> EDGE
data/biojava-live-1.7.1/demos/files/wublast/blastp.out:5925: EDE ==> EDGE
data/biojava-live-1.7.1/demos/files/wublast/blastp.out:5994: EDE ==> EDGE
data/biojava-live-1.7.1/demos/files/wublast/blastp.out:6046: EDE ==> EDGE
data/biojava-live-1.7.1/demos/files/wublast/blastp.out:6150: EDE ==> EDGE
data/biojava-live-1.7.1/demos/files/wublast/blastp.out:6164: EDE ==> EDGE
data/biojava-live-1.7.1/demos/files/wublast/blastp.out:6168: EDE ==> EDGE
data/biojava-live-1.7.1/demos/files/wublast/blastp.out:6179: EDE ==> EDGE
data/biojava-live-1.7.1/demos/files/wublast/blastp.out:6373: LKE ==> LIKE
data/biojava-live-1.7.1/demos/files/wublast/blastp.out:6401: EDE ==> EDGE
data/biojava-live-1.7.1/demos/files/wublast/blastp.out:6408: EDE ==> EDGE
data/biojava-live-1.7.1/demos/files/wublast/blastp.out:6422: EDE ==> EDGE
data/biojava-live-1.7.1/demos/files/wublast/blastp.out:6429: EDE ==> EDGE
data/biojava-live-1.7.1/demos/files/wublast/blastp.out:6436: EDE ==> EDGE
data/biojava-live-1.7.1/demos/files/wublast/blastp.out:6674: DED ==> DEAD
data/biojava-live-1.7.1/demos/files/wublast/blastp.out:6681: EDE ==> EDGE
data/biojava-live-1.7.1/demos/files/wublast/blastp.out:7418: EDE ==> EDGE
data/biojava-live-1.7.1/demos/files/wublast/blastp.out:7703: EDE ==> EDGE
data/biojava-live-1.7.1/demos/files/wublast/blastp.out:7703: DED ==> DEAD
data/biojava-live-1.7.1/demos/files/wublast/blastp.out:7724: EDE ==> EDGE
data/biojava-live-1.7.1/demos/files/wublast/blastp.out:8055: AKE ==> ACHE
data/biojava-live-1.7.1/demos/files/wublast/blastp.out:8132: DED ==> DEAD
data/biojava-live-1.7.1/demos/files/wublast/blastp.out:8169: DED ==> DEAD
data/biojava-live-1.7.1/demos/files/wublast/blastp.out:8297: AKE ==> ACHE
data/biojava-live-1.7.1/demos/files/wublast/blastp.out:8361: AKE ==> ACHE
data/biojava-live-1.7.1/demos/files/wublast/blastp.out:8376: AKE ==> ACHE
data/biojava-live-1.7.1/demos/files/wublast/blastp.out:8507: DED ==> DEAD
data/biojava-live-1.7.1/demos/files/wublast/blastp.out:8820: AKE ==> ACHE
data/biojava-live-1.7.1/demos/files/wublast/blastp.out:8887: AKE ==> ACHE
data/biojava-live-1.7.1/demos/files/wublast/blastp.out:9078: AKE ==> ACHE
data/biojava-live-1.7.1/demos/files/wublast/blastp.out:9097: AKE ==> ACHE
data/biojava-live-1.7.1/demos/files/wublast/blastp.out:9349: EDE ==> EDGE
data/biojava-live-1.7.1/demos/files/wublast/blastp.out:9356: DED ==> DEAD
data/biojava-live-1.7.1/demos/files/wublast/blastp.out:9470: EDE ==> EDGE
data/biojava-live-1.7.1/demos/files/wublast/blastp.out:9477: EDE ==> EDGE
data/biojava-live-1.7.1/demos/files/wublast/blastp.out:9495: EDE ==> EDGE
data/biojava-live-1.7.1/demos/files/wublast/blastp.out:9518: DED ==> DEAD
data/biojava-live-1.7.1/demos/files/wublast/blastp.out:9587: EDE ==> EDGE
data/biojava-live-1.7.1/demos/files/wublast/blastp.out:9602: EDE ==> EDGE
data/biojava-live-1.7.1/demos/files/wublast/blastp.out:9669: EDE ==> EDGE
data/biojava-live-1.7.1/demos/files/wublast/blastp.out:9717: EDE ==> EDGE
data/biojava-live-1.7.1/demos/files/wublast/blastp.out:9885: EDE ==> EDGE
data/biojava-live-1.7.1/demos/files/wublast/blastp.out:10023: EDE ==> EDGE
data/biojava-live-1.7.1/demos/files/wublast/blastp.out:10030: EDE ==> EDGE
data/biojava-live-1.7.1/demos/files/wublast/blastp.out:10052: EDE ==> EDGE
data/biojava-live-1.7.1/demos/files/wublast/blastp.out:10052: EDE ==> EDGE
data/biojava-live-1.7.1/demos/files/wublast/blastp.out:10063: EDE ==> EDGE
data/biojava-live-1.7.1/demos/files/wublast/blastp.out:10380: DED ==> DEAD
data/biojava-live-1.7.1/demos/files/wublast/blastp.out:10387: EDE ==> EDGE
data/biojava-live-1.7.1/demos/files/wublast/blastp.out:10394: EDE ==> EDGE
data/biojava-live-1.7.1/demos/files/wublast/blastp.out:10408: DED ==> DEAD
data/biojava-live-1.7.1/demos/files/wublast/blastp.out:10415: EDE ==> EDGE
data/biojava-live-1.7.1/demos/files/wublast/blastp.out:10422: EDE ==> EDGE
data/biojava-live-1.7.1/demos/files/wublast/blastp.out:10422: EDE ==> EDGE
data/biojava-live-1.7.1/demos/files/wublast/blastp.out:10429: EDE ==> EDGE
data/biojava-live-1.7.1/demos/files/wublast/blastp.out:10429: EDE ==> EDGE
data/biojava-live-1.7.1/demos/files/wublast/blastp.out:10436: EDE ==> EDGE
data/biojava-live-1.7.1/demos/files/wublast/blastp.out:10436: EDE ==> EDGE
data/biojava-live-1.7.1/demos/files/wublast/blastp.out:10443: EDE ==> EDGE
data/biojava-live-1.7.1/demos/files/wublast/blastp.out:10443: EDE ==> EDGE
data/biojava-live-1.7.1/demos/files/wublast/blastp.out:10464: EDE ==> EDGE
data/biojava-live-1.7.1/demos/files/wublast/blastp.out:10471: EDE ==> EDGE
data/biojava-live-1.7.1/demos/files/wublast/blastp.out:10666: AKE ==> ACHE
data/biojava-live-1.7.1/demos/files/wublast/blastp.out:10685: AKE ==> ACHE
data/biojava-live-1.7.1/demos/files/wublast/blastp.out:10738: AKE ==> ACHE
data/biojava-live-1.7.1/demos/files/wublast/blastp.out:11302: EDE ==> EDGE
data/biojava-live-1.7.1/demos/files/wublast/blastp.out:11313: EDE ==> EDGE
data/biojava-live-1.7.1/demos/files/wublast/blastp.out:11331: EDE ==> EDGE
data/biojava-live-1.7.1/demos/files/wublast/blastp.out:11342: EDE ==> EDGE
data/biojava-live-1.7.1/demos/files/wublast/blastp.out:11439: DED ==> DEAD
data/biojava-live-1.7.1/demos/files/wublast/blastp.out:11720: EDE ==> EDGE
data/biojava-live-1.7.1/demos/files/wublast/blastp.out:11738: EDE ==> EDGE
data/biojava-live-1.7.1/demos/files/wublast/blastp.out:11759: EDE ==> EDGE
data/biojava-live-1.7.1/demos/files/wublast/blastp.out:11770: EDE ==> EDGE
data/biojava-live-1.7.1/demos/files/wublast/blastp.out:12308: DED ==> DEAD
data/biojava-live-1.7.1/demos/files/wublast/blastp.out:12383: EDE ==> EDGE
data/biojava-live-1.7.1/demos/files/wublast/blastp.out:12383: DED ==> DEAD
data/biojava-live-1.7.1/demos/files/wublast/blastp.out:12394: EDE ==> EDGE
data/biojava-live-1.7.1/demos/files/wublast/blastp.out:12394: DED ==> DEAD
data/biojava-live-1.7.1/demos/files/wublast/blastp.out:12475: DED ==> DEAD
data/biojava-live-1.7.1/demos/files/wublast/blastp.out:12719: EDE ==> EDGE
data/biojava-live-1.7.1/demos/files/wublast/blastp.out:12726: EDE ==> EDGE
data/biojava-live-1.7.1/demos/files/wublast/blastp.out:12748: EDE ==> EDGE
data/biojava-live-1.7.1/demos/files/wublast/blastp.out:12851: DED ==> DEAD
data/biojava-live-1.7.1/demos/files/wublast/blastp.out:12872: DED ==> DEAD
data/biojava-live-1.7.1/demos/files/wublast/blastp.out:12879: DED ==> DEAD
data/biojava-live-1.7.1/demos/files/wublast/blastp.out:12958: EDE ==> EDGE
data/biojava-live-1.7.1/demos/files/wublast/blastp.out:12969: EDE ==> EDGE
data/biojava-live-1.7.1/demos/files/wublast/blastp.out:13004: EDE ==> EDGE
data/biojava-live-1.7.1/demos/files/wublast/blastp.out:13230: TE ==> THE, BE, WE
data/biojava-live-1.7.1/demos/files/wublast/blastp.out:13374: EDE ==> EDGE
data/biojava-live-1.7.1/demos/files/wublast/blastp.out:13378: EDE ==> EDGE
data/biojava-live-1.7.1/demos/files/wublast/blastp.out:13389: EDE ==> EDGE
data/biojava-live-1.7.1/demos/files/wublast/blastp.out:13389: EDE ==> EDGE
data/biojava-live-1.7.1/demos/files/wublast/blastp.out:13411: EDE ==> EDGE
data/biojava-live-1.7.1/demos/files/wublast/blastp.out:13411: EDE ==> EDGE
data/biojava-live-1.7.1/demos/files/wublast/blastp.out:13437: EDE ==> EDGE
data/biojava-live-1.7.1/demos/files/wublast/blastp.out:13437: EDE ==> EDGE
data/biojava-live-1.7.1/demos/files/wublast/blastp.out:13444: EDE ==> EDGE
data/biojava-live-1.7.1/demos/files/wublast/blastp.out:13444: EDE ==> EDGE
data/biojava-live-1.7.1/demos/files/wublast/blastp.out:13451: EDE ==> EDGE
data/biojava-live-1.7.1/demos/files/wublast/blastp.out:13451: EDE ==> EDGE
data/biojava-live-1.7.1/demos/files/wublast/blastp.out:13451: EDE ==> EDGE
data/biojava-live-1.7.1/demos/files/wublast/blastp.out:13458: EDE ==> EDGE
data/biojava-live-1.7.1/demos/files/wublast/blastp.out:13458: EDE ==> EDGE
data/biojava-live-1.7.1/demos/files/wublast/blastp.out:13458: EDE ==> EDGE
data/biojava-live-1.7.1/demos/files/wublast/blastp.out:13465: EDE ==> EDGE
data/biojava-live-1.7.1/demos/files/wublast/blastp.out:13476: EDE ==> EDGE
data/biojava-live-1.7.1/demos/files/wublast/blastp.out:13476: EDE ==> EDGE
data/biojava-live-1.7.1/demos/files/wublast/blastp.out:13491: EDE ==> EDGE
data/biojava-live-1.7.1/demos/files/wublast/blastp.out:13498: EDE ==> EDGE
data/biojava-live-1.7.1/demos/files/wublast/blastp.out:13498: EDE ==> EDGE
data/biojava-live-1.7.1/demos/files/wublast/blastp.out:13505: EDE ==> EDGE
data/biojava-live-1.7.1/demos/files/wublast/blastp.out:13516: EDE ==> EDGE
data/biojava-live-1.7.1/demos/files/wublast/blastp.out:13516: EDE ==> EDGE
data/biojava-live-1.7.1/demos/files/wublast/blastp.out:13640: EDE ==> EDGE
data/biojava-live-1.7.1/demos/files/wublast/blastp.out:13647: EDE ==> EDGE
data/biojava-live-1.7.1/demos/files/wublast/blastp.out:13647: DED ==> DEAD
data/biojava-live-1.7.1/demos/files/wublast/blastp.out:13654: EDE ==> EDGE
data/biojava-live-1.7.1/demos/files/wublast/blastp.out:13773: EDE ==> EDGE
data/biojava-live-1.7.1/demos/files/wublast/blastp.out:13780: EDE ==> EDGE
data/biojava-live-1.7.1/demos/files/wublast/blastp.out:13787: EDE ==> EDGE
data/biojava-live-1.7.1/demos/files/wublast/blastp.out:13855: EDE ==> EDGE
data/biojava-live-1.7.1/demos/files/wublast/blastp.out:14020: EDE ==> EDGE
data/biojava-live-1.7.1/demos/files/wublast/blastp.out:14031: EDE ==> EDGE
data/biojava-live-1.7.1/demos/files/wublast/blastp.out:14127: EDE ==> EDGE
data/biojava-live-1.7.1/demos/files/wublast/blastp.out:14141: EDE ==> EDGE
data/biojava-live-1.7.1/demos/files/wublast/blastp.out:14141: EDE ==> EDGE
data/biojava-live-1.7.1/demos/files/wublast/blastp.out:14162: EDE ==> EDGE
data/biojava-live-1.7.1/demos/files/wublast/blastp.out:14176: EDE ==> EDGE
data/biojava-live-1.7.1/demos/files/wublast/blastp.out:14307: EDE ==> EDGE
data/biojava-live-1.7.1/demos/files/wublast/blastp.out:14313: DAA ==> DATA
data/biojava-live-1.7.1/demos/files/wublast/blastp.out:14313: EDE ==> EDGE
data/biojava-live-1.7.1/demos/files/wublast/blastp.out:14320: DAA ==> DATA
data/biojava-live-1.7.1/demos/files/wublast/blastp.out:14320: EDE ==> EDGE
data/biojava-live-1.7.1/demos/files/wublast/blastp.out:14320: EDE ==> EDGE
data/biojava-live-1.7.1/demos/files/wublast/blastp.out:14495: EDE ==> EDGE
data/biojava-live-1.7.1/demos/files/wublast/blastp.out:14675: DAA ==> DATA
data/biojava-live-1.7.1/demos/files/wublast/blastp.out:14884: DED ==> DEAD
data/biojava-live-1.7.1/demos/files/wublast/blastp.out:15139: EDE ==> EDGE
data/biojava-live-1.7.1/demos/files/wublast/blastp.out:15139: EDE ==> EDGE
data/biojava-live-1.7.1/demos/files/wublast/blastp.out:15153: EDE ==> EDGE
data/biojava-live-1.7.1/demos/files/wublast/blastp.out:15153: EDE ==> EDGE
data/biojava-live-1.7.1/demos/files/wublast/blastp.out:15160: EDE ==> EDGE
data/biojava-live-1.7.1/demos/files/wublast/blastp.out:15160: DED ==> DEAD
data/biojava-live-1.7.1/demos/files/wublast/blastp.out:15220: EDE ==> EDGE
data/biojava-live-1.7.1/demos/files/wublast/blastp.out:15637: EDE ==> EDGE
data/biojava-live-1.7.1/demos/files/wublast/blastp.out:15658: EDE ==> EDGE
data/biojava-live-1.7.1/demos/files/wublast/blastp.out:15665: EDE ==> EDGE
data/biojava-live-1.7.1/demos/files/wublast/blastp.out:15679: EDE ==> EDGE
data/biojava-live-1.7.1/demos/files/wublast/blastp.out:15686: EDE ==> EDGE
data/biojava-live-1.7.1/demos/files/wublast/blastp.out:15693: EDE ==> EDGE
data/biojava-live-1.7.1/demos/files/wublast/blastp.out:15704: DED ==> DEAD
data/biojava-live-1.7.1/demos/files/wublast/blastp.out:15747: LKE ==> LIKE
data/biojava-live-1.7.1/demos/files/wublast/blastp.out:15769: LKE ==> LIKE
data/biojava-live-1.7.1/demos/files/wublast/blastp.out:15820: EDE ==> EDGE
data/biojava-live-1.7.1/demos/files/wublast/blastx.out:94: SUPRESSOR ==> SUPPRESSOR
data/biojava-live-1.7.1/demos/files/wublast/blastx.out:381: SPECIF ==> SPECIFY, SPECIFIC
data/biojava-live-1.7.1/demos/files/wublast/blastx.out:657: EDE ==> EDGE
data/biojava-live-1.7.1/demos/files/wublast/blastx.out:771: EDE ==> EDGE
data/biojava-live-1.7.1/demos/files/wublast/blastx.out:922: EDE ==> EDGE
data/biojava-live-1.7.1/demos/files/wublast/blastx.out:929: EDE ==> EDGE
data/biojava-live-1.7.1/demos/files/wublast/blastx.out:998: EDE ==> EDGE
data/biojava-live-1.7.1/demos/files/wublast/blastx.out:1005: EDE ==> EDGE
data/biojava-live-1.7.1/demos/files/wublast/blastx.out:1412: DED ==> DEAD
data/biojava-live-1.7.1/demos/files/wublast/blastx.out:1693: EDE ==> EDGE
data/biojava-live-1.7.1/demos/files/wublast/blastx.out:2164: EDE ==> EDGE
data/biojava-live-1.7.1/demos/files/wublast/blastx.out:2175: EDE ==> EDGE
data/biojava-live-1.7.1/demos/files/wublast/blastx.out:2200: EDE ==> EDGE
data/biojava-live-1.7.1/demos/files/wublast/blastx.out:2207: EDE ==> EDGE
data/biojava-live-1.7.1/demos/files/wublast/blastx.out:2654: LKE ==> LIKE
data/biojava-live-1.7.1/demos/files/wublast/blastx.out:2731: EDE ==> EDGE
data/biojava-live-1.7.1/demos/files/wublast/blastx.out:2833: LKE ==> LIKE
data/biojava-live-1.7.1/demos/files/wublast/blastx.out:2880: EDE ==> EDGE
data/biojava-live-1.7.1/demos/files/wublast/blastx.out:2887: EDE ==> EDGE
data/biojava-live-1.7.1/demos/files/wublast/blastx.out:2894: EDE ==> EDGE
data/biojava-live-1.7.1/demos/files/wublast/blastx.out:2922: EDE ==> EDGE
data/biojava-live-1.7.1/demos/files/wublast/blastx.out:3009: EDE ==> EDGE
data/biojava-live-1.7.1/demos/files/wublast/blastx.out:3016: EDE ==> EDGE
data/biojava-live-1.7.1/demos/files/wublast/blastx.out:3027: EDE ==> EDGE
data/biojava-live-1.7.1/demos/files/wublast/blastx.out:3059: EDE ==> EDGE
data/biojava-live-1.7.1/demos/files/wublast/blastx.out:3181: EDE ==> EDGE
data/biojava-live-1.7.1/demos/files/wublast/blastx.out:3292: EDE ==> EDGE
data/biojava-live-1.7.1/demos/files/wublast/blastx.out:3371: EDE ==> EDGE
data/biojava-live-1.7.1/demos/files/wublast/blastx.out:3378: EDE ==> EDGE
data/biojava-live-1.7.1/demos/files/wublast/blastx.out:3385: EDE ==> EDGE
data/biojava-live-1.7.1/demos/files/wublast/blastx.out:3399: EDE ==> EDGE
data/biojava-live-1.7.1/demos/files/wublast/blastx.out:3577: EDE ==> EDGE
data/biojava-live-1.7.1/demos/files/wublast/blastx.out:3624: DED ==> DEAD
data/biojava-live-1.7.1/demos/files/wublast/blastx.out:3648: EDE ==> EDGE
data/biojava-live-1.7.1/demos/files/wublast/blastx.out:3655: EDE ==> EDGE
data/biojava-live-1.7.1/demos/files/wublast/blastx.out:3655: DED ==> DEAD
data/biojava-live-1.7.1/demos/files/wublast/blastx.out:3662: EDE ==> EDGE
data/biojava-live-1.7.1/demos/files/wublast/blastx.out:3669: EDE ==> EDGE
data/biojava-live-1.7.1/demos/files/wublast/blastx.out:3669: DED ==> DEAD
data/biojava-live-1.7.1/demos/files/wublast/blastx.out:3683: EDE ==> EDGE
data/biojava-live-1.7.1/demos/files/wublast/blastx.out:3683: DED ==> DEAD
data/biojava-live-1.7.1/demos/files/wublast/blastx.out:3704: EDE ==> EDGE
data/biojava-live-1.7.1/demos/files/wublast/blastx.out:3708: DED ==> DEAD
data/biojava-live-1.7.1/demos/files/wublast/blastx.out:3722: EDE ==> EDGE
data/biojava-live-1.7.1/demos/files/wublast/blastx.out:3729: EDE ==> EDGE
data/biojava-live-1.7.1/demos/files/wublast/blastx.out:3767: EDE ==> EDGE
data/biojava-live-1.7.1/demos/files/wublast/blastx.out:3792: EDE ==> EDGE
data/biojava-live-1.7.1/demos/files/wublast/blastx.out:3854: EDE ==> EDGE
data/biojava-live-1.7.1/demos/files/wublast/blastx.out:3872: EDE ==> EDGE
data/biojava-live-1.7.1/demos/files/wublast/blastx.out:3883: EDE ==> EDGE
data/biojava-live-1.7.1/demos/files/wublast/blastx.out:3890: EDE ==> EDGE
data/biojava-live-1.7.1/demos/files/wublast/blastx.out:3897: EDE ==> EDGE
data/biojava-live-1.7.1/demos/files/wublast/blastx.out:3945: EDE ==> EDGE
data/biojava-live-1.7.1/demos/files/wublast/blastx.out:3980: EDE ==> EDGE
data/biojava-live-1.7.1/demos/files/wublast/blastx.out:4005: DED ==> DEAD
data/biojava-live-1.7.1/demos/files/wublast/blastx.out:4027: DED ==> DEAD
data/biojava-live-1.7.1/demos/files/wublast/blastx.out:4034: DED ==> DEAD
data/biojava-live-1.7.1/demos/files/wublast/blastx.out:4041: DED ==> DEAD
data/biojava-live-1.7.1/demos/files/wublast/blastx.out:4059: DED ==> DEAD
data/biojava-live-1.7.1/demos/files/wublast/blastx.out:4238: EDE ==> EDGE
data/biojava-live-1.7.1/demos/files/wublast/blastx.out:4245: EDE ==> EDGE
data/biojava-live-1.7.1/demos/files/wublast/blastx.out:4259: EDE ==> EDGE
data/biojava-live-1.7.1/demos/files/wublast/blastx.out:4266: EDE ==> EDGE
data/biojava-live-1.7.1/demos/files/wublast/blastx.out:4273: EDE ==> EDGE
data/biojava-live-1.7.1/demos/files/wublast/blastx.out:4287: EDE ==> EDGE
data/biojava-live-1.7.1/demos/files/wublast/blastx.out:4287: EDE ==> EDGE
data/biojava-live-1.7.1/demos/files/wublast/blastx.out:4343: EDE ==> EDGE
data/biojava-live-1.7.1/demos/files/wublast/blastx.out:4450: EDE ==> EDGE
data/biojava-live-1.7.1/demos/files/wublast/blastx.out:4468: EDE ==> EDGE
data/biojava-live-1.7.1/demos/files/wublast/blastx.out:4475: EDE ==> EDGE
data/biojava-live-1.7.1/demos/files/wublast/blastx.out:4475: EDE ==> EDGE
data/biojava-live-1.7.1/demos/files/wublast/blastx.out:4475: EDE ==> EDGE
data/biojava-live-1.7.1/demos/files/wublast/blastx.out:4486: EDE ==> EDGE
data/biojava-live-1.7.1/demos/files/wublast/blastx.out:4493: EDE ==> EDGE
data/biojava-live-1.7.1/demos/files/wublast/blastx.out:4500: LKE ==> LIKE
data/biojava-live-1.7.1/demos/files/wublast/blastx.out:4545: EDE ==> EDGE
data/biojava-live-1.7.1/demos/files/wublast/blastx.out:4559: EDE ==> EDGE
data/biojava-live-1.7.1/demos/files/wublast/blastx.out:4682: EDE ==> EDGE
data/biojava-live-1.7.1/demos/files/wublast/blastx.out:4770: EDE ==> EDGE
data/biojava-live-1.7.1/demos/files/wublast/blastx.out:4802: DED ==> DEAD
data/biojava-live-1.7.1/demos/files/wublast/blastx.out:4809: EDE ==> EDGE
data/biojava-live-1.7.1/demos/files/wublast/blastx.out:4902: EDE ==> EDGE
data/biojava-live-1.7.1/demos/files/wublast/blastx.out:5024: SUPRESSOR ==> SUPPRESSOR
data/biojava-live-1.7.1/demos/files/wublast/blastx.out:5558: EDE ==> EDGE
data/biojava-live-1.7.1/demos/files/wublast/blastx.out:5558: DED ==> DEAD
data/biojava-live-1.7.1/demos/files/wublast/blastx.out:5827: EDE ==> EDGE
data/biojava-live-1.7.1/demos/files/wublast/blastx.out:6317: EDE ==> EDGE
data/biojava-live-1.7.1/demos/files/wublast/blastx.out:6751: DED ==> DEAD
data/biojava-live-1.7.1/demos/files/wublast/blastx.out:6758: EDE ==> EDGE
data/biojava-live-1.7.1/demos/files/wublast/blastx.out:6765: EDE ==> EDGE
data/biojava-live-1.7.1/demos/files/wublast/blastx.out:6779: DED ==> DEAD
data/biojava-live-1.7.1/demos/files/wublast/blastx.out:6786: EDE ==> EDGE
data/biojava-live-1.7.1/demos/files/wublast/blastx.out:6793: EDE ==> EDGE
data/biojava-live-1.7.1/demos/files/wublast/blastx.out:6793: EDE ==> EDGE
data/biojava-live-1.7.1/demos/files/wublast/blastx.out:6800: EDE ==> EDGE
data/biojava-live-1.7.1/demos/files/wublast/blastx.out:6800: EDE ==> EDGE
data/biojava-live-1.7.1/demos/files/wublast/blastx.out:6807: EDE ==> EDGE
data/biojava-live-1.7.1/demos/files/wublast/blastx.out:6814: EDE ==> EDGE
data/biojava-live-1.7.1/demos/files/wublast/blastx.out:6814: EDE ==> EDGE
data/biojava-live-1.7.1/demos/files/wublast/blastx.out:6821: EDE ==> EDGE
data/biojava-live-1.7.1/demos/files/wublast/blastx.out:6821: EDE ==> EDGE
data/biojava-live-1.7.1/demos/files/wublast/blastx.out:6834: DED ==> DEAD
data/biojava-live-1.7.1/demos/files/wublast/blastx.out:6855: DED ==> DEAD
data/biojava-live-1.7.1/demos/files/wublast/blastx.out:6988: DED ==> DEAD
data/biojava-live-1.7.1/demos/files/wublast/blastx.out:7114: EDE ==> EDGE
data/biojava-live-1.7.1/demos/files/wublast/blastx.out:7121: EDE ==> EDGE
data/biojava-live-1.7.1/demos/files/wublast/blastx.out:7142: EDE ==> EDGE
data/biojava-live-1.7.1/demos/files/wublast/blastx.out:7155: EDE ==> EDGE
data/biojava-live-1.7.1/demos/files/wublast/blastx.out:7431: DED ==> DEAD
data/biojava-live-1.7.1/demos/files/wublast/blastx.out:7452: DED ==> DEAD
data/biojava-live-1.7.1/demos/files/wublast/blastx.out:7459: DED ==> DEAD
data/biojava-live-1.7.1/demos/files/wublast/blastx.out:7589: DED ==> DEAD
data/biojava-live-1.7.1/demos/files/wublast/blastx.out:7596: EDE ==> EDGE
data/biojava-live-1.7.1/demos/files/wublast/blastx.out:7749: EDE ==> EDGE
data/biojava-live-1.7.1/demos/files/wublast/blastx.out:7756: EDE ==> EDGE
data/biojava-live-1.7.1/demos/files/wublast/blastx.out:7781: EDE ==> EDGE
data/biojava-live-1.7.1/demos/files/wublast/blastx.out:7788: DED ==> DEAD
data/biojava-live-1.7.1/demos/files/wublast/blastx.out:7970: EDE ==> EDGE
data/biojava-live-1.7.1/demos/files/wublast/blastx.out:7995: EDE ==> EDGE
data/biojava-live-1.7.1/demos/files/wublast/blastx.out:8002: EDE ==> EDGE
data/biojava-live-1.7.1/demos/files/wublast/blastx.out:8160: EDE ==> EDGE
data/biojava-live-1.7.1/demos/files/wublast/blastx.out:8167: EDE ==> EDGE
data/biojava-live-1.7.1/demos/files/wublast/blastx.out:8167: DED ==> DEAD
data/biojava-live-1.7.1/demos/files/wublast/blastx.out:8174: EDE ==> EDGE
data/biojava-live-1.7.1/demos/files/wublast/blastx.out:8315: EDE ==> EDGE
data/biojava-live-1.7.1/demos/files/wublast/blastx.out:8322: EDE ==> EDGE
data/biojava-live-1.7.1/demos/files/wublast/blastx.out:9475: DED ==> DEAD
data/biojava-live-1.7.1/demos/files/wublast/blastx.out:9639: EDE ==> EDGE
data/biojava-live-1.7.1/demos/files/wublast/blastx.out:9734: EDE ==> EDGE
data/biojava-live-1.7.1/demos/files/wublast/blastx.out:9931: EDE ==> EDGE
data/biojava-live-1.7.1/demos/files/wublast/blastx.out:9981: EDE ==> EDGE
data/biojava-live-1.7.1/demos/files/wublast/blastx.out:9995: EDE ==> EDGE
data/biojava-live-1.7.1/demos/files/wublast/blastx.out:10009: EDE ==> EDGE
data/biojava-live-1.7.1/demos/files/wublast/blastx.out:10559: EDE ==> EDGE
data/biojava-live-1.7.1/demos/files/wublast/blastx.out:10573: EDE ==> EDGE
data/biojava-live-1.7.1/demos/files/wublast/blastx.out:10724: EDE ==> EDGE
data/biojava-live-1.7.1/demos/files/wublast/blastx.out:10731: EDE ==> EDGE
data/biojava-live-1.7.1/demos/files/wublast/blastx.out:10731: EDE ==> EDGE
data/biojava-live-1.7.1/demos/files/wublast/blastx.out:10738: EDE ==> EDGE
data/biojava-live-1.7.1/demos/files/wublast/blastx.out:10745: EDE ==> EDGE
data/biojava-live-1.7.1/demos/files/wublast/blastx.out:10759: EDE ==> EDGE
data/biojava-live-1.7.1/demos/files/wublast/blastx.out:10759: EDE ==> EDGE
data/biojava-live-1.7.1/demos/files/wublast/blastx.out:10766: EDE ==> EDGE
data/biojava-live-1.7.1/demos/files/wublast/blastx.out:10766: EDE ==> EDGE
data/biojava-live-1.7.1/demos/files/wublast/blastx.out:10773: EDE ==> EDGE
data/biojava-live-1.7.1/demos/files/wublast/blastx.out:10773: EDE ==> EDGE
data/biojava-live-1.7.1/demos/files/wublast/blastx.out:10773: EDE ==> EDGE
data/biojava-live-1.7.1/demos/files/wublast/blastx.out:10780: EDE ==> EDGE
data/biojava-live-1.7.1/demos/files/wublast/blastx.out:10780: EDE ==> EDGE
data/biojava-live-1.7.1/demos/files/wublast/blastx.out:10780: EDE ==> EDGE
data/biojava-live-1.7.1/demos/files/wublast/blastx.out:10787: EDE ==> EDGE
data/biojava-live-1.7.1/demos/files/wublast/blastx.out:10787: EDE ==> EDGE
data/biojava-live-1.7.1/demos/files/wublast/blastx.out:10794: EDE ==> EDGE
data/biojava-live-1.7.1/demos/files/wublast/blastx.out:10794: EDE ==> EDGE
data/biojava-live-1.7.1/demos/files/wublast/blastx.out:10801: EDE ==> EDGE
data/biojava-live-1.7.1/demos/files/wublast/blastx.out:10801: EDE ==> EDGE
data/biojava-live-1.7.1/demos/files/wublast/blastx.out:10801: EDE ==> EDGE
data/biojava-live-1.7.1/demos/files/wublast/blastx.out:10808: EDE ==> EDGE
data/biojava-live-1.7.1/demos/files/wublast/blastx.out:10808: EDE ==> EDGE
data/biojava-live-1.7.1/demos/files/wublast/blastx.out:10808: EDE ==> EDGE
data/biojava-live-1.7.1/demos/files/wublast/blastx.out:10815: EDE ==> EDGE
data/biojava-live-1.7.1/demos/files/wublast/blastx.out:10822: EDE ==> EDGE
data/biojava-live-1.7.1/demos/files/wublast/blastx.out:10829: EDE ==> EDGE
data/biojava-live-1.7.1/demos/files/wublast/blastx.out:10829: EDE ==> EDGE
data/biojava-live-1.7.1/demos/files/wublast/blastx.out:10829: EDE ==> EDGE
data/biojava-live-1.7.1/demos/files/wublast/blastx.out:10836: EDE ==> EDGE
data/biojava-live-1.7.1/demos/files/wublast/blastx.out:10836: EDE ==> EDGE
data/biojava-live-1.7.1/demos/files/wublast/blastx.out:10836: EDE ==> EDGE
data/biojava-live-1.7.1/demos/files/wublast/blastx.out:10843: EDE ==> EDGE
data/biojava-live-1.7.1/demos/files/wublast/blastx.out:10843: EDE ==> EDGE
data/biojava-live-1.7.1/demos/files/wublast/blastx.out:10850: EDE ==> EDGE
data/biojava-live-1.7.1/demos/files/wublast/blastx.out:10850: EDE ==> EDGE
data/biojava-live-1.7.1/demos/files/wublast/blastx.out:10857: EDE ==> EDGE
data/biojava-live-1.7.1/demos/files/wublast/blastx.out:10857: EDE ==> EDGE
data/biojava-live-1.7.1/demos/files/wublast/blastx.out:10864: EDE ==> EDGE
data/biojava-live-1.7.1/demos/files/wublast/blastx.out:10871: EDE ==> EDGE
data/biojava-live-1.7.1/demos/files/wublast/blastx.out:10878: EDE ==> EDGE
data/biojava-live-1.7.1/demos/files/wublast/blastx.out:10885: EDE ==> EDGE
data/biojava-live-1.7.1/demos/files/wublast/blastx.out:10885: EDE ==> EDGE
data/biojava-live-1.7.1/demos/files/wublast/blastx.out:10885: EDE ==> EDGE
data/biojava-live-1.7.1/demos/files/wublast/blastx.out:10892: EDE ==> EDGE
data/biojava-live-1.7.1/demos/files/wublast/blastx.out:11031: EDE ==> EDGE
data/biojava-live-1.7.1/demos/files/wublast/blastx.out:11045: EDE ==> EDGE
data/biojava-live-1.7.1/demos/files/wublast/blastx.out:11045: EDE ==> EDGE
data/biojava-live-1.7.1/demos/files/wublast/blastx.out:11066: EDE ==> EDGE
data/biojava-live-1.7.1/demos/files/wublast/blastx.out:11080: EDE ==> EDGE
data/biojava-live-1.7.1/demos/files/wublast/blastx.out:11300: DED ==> DEAD
data/biojava-live-1.7.1/demos/files/wublast/blastx.out:11467: EDE ==> EDGE
data/biojava-live-1.7.1/demos/files/wublast/blastx.out:11547: DED ==> DEAD
data/biojava-live-1.7.1/demos/files/wublast/blastx.out:11805: EDE ==> EDGE
data/biojava-live-1.7.1/demos/files/wublast/blastx.out:11805: EDE ==> EDGE
data/biojava-live-1.7.1/demos/files/wublast/blastx.out:11812: EDE ==> EDGE
data/biojava-live-1.7.1/demos/files/wublast/blastx.out:11812: EDE ==> EDGE
data/biojava-live-1.7.1/demos/files/wublast/blastx.out:12022: DED ==> DEAD
data/biojava-live-1.7.1/demos/files/wublast/blastx.out:12304: DED ==> DEAD
data/biojava-live-1.7.1/demos/files/wublast/blastx.out:12682: EDE ==> EDGE
data/biojava-live-1.7.1/demos/files/wublast/blastx.out:12682: EDE ==> EDGE
data/biojava-live-1.7.1/demos/files/wublast/blastx.out:12761: EDE ==> EDGE
data/biojava-live-1.7.1/demos/files/wublast/blastx.out:12807: LKE ==> LIKE
data/biojava-live-1.7.1/demos/files/wublast/blastx.out:12981: EDE ==> EDGE
data/biojava-live-1.7.1/demos/files/wublast/blastx.out:12995: EDE ==> EDGE
data/biojava-live-1.7.1/demos/files/wublast/blastx.out:13058: EDE ==> EDGE
data/biojava-live-1.7.1/demos/files/wublast/blastx.out:13065: EDE ==> EDGE
data/biojava-live-1.7.1/demos/files/wublast/sh_blastx.out:185: EDE ==> EDGE
data/biojava-live-1.7.1/demos/files/wublast/blastn.out:112: complet ==> complete
data/biojava-live-1.7.1/demos/files/wublast/blastn.out:121: complet ==> complete
data/biojava-live-1.7.1/demos/files/wublast/blastn.out:183: complet ==> complete
data/biojava-live-1.7.1/demos/files/wublast/blastn.out:202: complet ==> complete
data/biojava-live-1.7.1/demos/files/wublast/blastn.out:234: complet ==> complete
data/biojava-live-1.7.1/demos/files/wublast/blastn.out:276: complet ==> complete
data/biojava-live-1.7.1/demos/files/wublast/blastn.out:327: complet ==> complete
data/biojava-live-1.7.1/demos/files/wublast/blastn.out:364: complet ==> complete
data/biojava-live-1.7.1/demos/files/wublast/blastn.out:367: complet ==> complete
data/biojava-live-1.7.1/demos/files/wublast/blastn.out:368: complet ==> complete
data/biojava-live-1.7.1/demos/files/wublast/blastn.out:404: complet ==> complete
data/biojava-live-1.7.1/demos/files/wublast/blastn.out:487: uniqu ==> unique
data/biojava-live-1.7.1/demos/files/wublast/tblastn.out:330: fro ==> for, from
data/biojava-live-1.7.1/demos/files/wublast/tblastn.out:331: alph ==> alpha
data/biojava-live-1.7.1/demos/files/wublast/tblastn.out:344: alph ==> alpha
data/biojava-live-1.7.1/demos/files/wublast/tblastn.out:345: alph ==> alpha
data/biojava-live-1.7.1/demos/files/wublast/tblastn.out:393: thre ==> three, there, their, the
data/biojava-live-1.7.1/demos/files/wublast/tblastn.out:416: complet ==> complete
data/biojava-live-1.7.1/demos/files/wublast/tblastn.out:463: complet ==> complete
data/biojava-live-1.7.1/demos/files/wublast/tblastn.out:901: EDE ==> EDGE
data/biojava-live-1.7.1/demos/files/wublast/tblastn.out:1116: EDE ==> EDGE
data/biojava-live-1.7.1/demos/files/wublast/tblastn.out:1135: EDE ==> EDGE
data/biojava-live-1.7.1/demos/files/wublast/tblastn.out:1179: EDE ==> EDGE
data/biojava-live-1.7.1/demos/files/wublast/tblastn.out:1198: EDE ==> EDGE
data/biojava-live-1.7.1/demos/files/wublast/tblastn.out:1719: DED ==> DEAD
data/biojava-live-1.7.1/demos/files/wublast/tblastn.out:2108: DED ==> DEAD
data/biojava-live-1.7.1/demos/files/wublast/tblastn.out:2808: EDE ==> EDGE
data/biojava-live-1.7.1/demos/files/wublast/tblastn.out:3277: EDE ==> EDGE
data/biojava-live-1.7.1/demos/files/wublast/tblastn.out:3298: EDE ==> EDGE
data/biojava-live-1.7.1/demos/files/wublast/tblastn.out:3330: EDE ==> EDGE
data/biojava-live-1.7.1/demos/files/wublast/tblastn.out:3597: EDE ==> EDGE
data/biojava-live-1.7.1/demos/files/wublast/tblastn.out:3615: EDE ==> EDGE
data/biojava-live-1.7.1/demos/files/wublast/tblastn.out:3999: EDE ==> EDGE
data/biojava-live-1.7.1/demos/files/wublast/tblastn.out:4166: EDE ==> EDGE
data/biojava-live-1.7.1/demos/files/wublast/tblastn.out:4397: LKE ==> LIKE
data/biojava-live-1.7.1/demos/files/wublast/tblastn.out:4698: EDE ==> EDGE
data/biojava-live-1.7.1/demos/files/wublast/tblastn.out:4896: EDE ==> EDGE
data/biojava-live-1.7.1/demos/files/wublast/tblastn.out:5229: EDE ==> EDGE
data/biojava-live-1.7.1/demos/files/wublast/tblastn.out:5248: EDE ==> EDGE
data/biojava-live-1.7.1/demos/files/wublast/tblastn.out:5267: EDE ==> EDGE
data/biojava-live-1.7.1/demos/files/wublast/tblastn.out:5296: EDE ==> EDGE
data/biojava-live-1.7.1/demos/files/wublast/tblastn.out:5453: EDE ==> EDGE
data/biojava-live-1.7.1/demos/files/wublast/tblastn.out:5472: EDE ==> EDGE
data/biojava-live-1.7.1/demos/files/wublast/tblastn.out:5491: EDE ==> EDGE
data/biojava-live-1.7.1/demos/files/wublast/tblastn.out:5524: EDE ==> EDGE
data/biojava-live-1.7.1/demos/files/wublast/tblastn.out:5670: EDE ==> EDGE
data/biojava-live-1.7.1/demos/files/wublast/tblastn.out:5689: EDE ==> EDGE
data/biojava-live-1.7.1/demos/files/wublast/tblastn.out:5708: EDE ==> EDGE
data/biojava-live-1.7.1/demos/files/wublast/tblastn.out:5741: EDE ==> EDGE
data/biojava-live-1.7.1/demos/files/wublast/tblastn.out:6132: EDE ==> EDGE
data/biojava-live-1.7.1/demos/files/wublast/tblastn.out:6783: EDE ==> EDGE
data/biojava-live-1.7.1/demos/files/wublast/tblastn.out:6794: EDE ==> EDGE
data/biojava-live-1.7.1/demos/files/wublast/tblastn.out:6824: EDE ==> EDGE
data/biojava-live-1.7.1/demos/files/wublast/tblastn.out:7026: DED ==> DEAD
data/biojava-live-1.7.1/demos/files/wublast/tblastn.out:7094: DED ==> DEAD
data/biojava-live-1.7.1/demos/files/wublast/tblastn.out:7101: DED ==> DEAD
data/biojava-live-1.7.1/demos/files/wublast/tblastn.out:7119: DED ==> DEAD
data/biojava-live-1.7.1/demos/files/wublast/tblastn.out:7340: EDE ==> EDGE
data/biojava-live-1.7.1/demos/files/wublast/tblastn.out:7471: EDE ==> EDGE
data/biojava-live-1.7.1/demos/files/wublast/tblastn.out:7511: DED ==> DEAD
data/biojava-live-1.7.1/demos/files/wublast/tblastn.out:7579: DED ==> DEAD
data/biojava-live-1.7.1/demos/files/wublast/tblastn.out:7586: DED ==> DEAD
data/biojava-live-1.7.1/demos/files/wublast/tblastn.out:7604: DED ==> DEAD
data/biojava-live-1.7.1/demos/files/wublast/tblastn.out:7640: EDE ==> EDGE
data/biojava-live-1.7.1/demos/files/wublast/tblastn.out:7835: EDE ==> EDGE
data/biojava-live-1.7.1/demos/files/wublast/tblastn.out:8544: EDE ==> EDGE
data/biojava-live-1.7.1/demos/files/wublast/tblastn.out:8843: EDE ==> EDGE
data/biojava-live-1.7.1/demos/files/wublast/tblastn.out:8850: EDE ==> EDGE
data/biojava-live-1.7.1/demos/files/wublast/tblastn.out:8967: EDE ==> EDGE
data/biojava-live-1.7.1/demos/files/wublast/tblastn.out:9986: EDE ==> EDGE
data/biojava-live-1.7.1/demos/files/wublast/tblastn.out:10007: EDE ==> EDGE
data/biojava-live-1.7.1/demos/files/wublast/tblastn.out:10014: EDE ==> EDGE
data/biojava-live-1.7.1/demos/files/wublast/tblastn.out:10021: EDE ==> EDGE
data/biojava-live-1.7.1/demos/files/wublast/tblastn.out:10028: EDE ==> EDGE
data/biojava-live-1.7.1/demos/files/wublast/tblastn.out:10035: EDE ==> EDGE
data/biojava-live-1.7.1/demos/files/wublast/tblastn.out:10042: EDE ==> EDGE
data/biojava-live-1.7.1/demos/files/wublast/tblastn.out:10049: EDE ==> EDGE
data/biojava-live-1.7.1/demos/files/wublast/tblastn.out:10067: EDE ==> EDGE
data/biojava-live-1.7.1/demos/files/wublast/tblastn.out:12046: LKE ==> LIKE
data/biojava-live-1.7.1/demos/files/wublast/tblastn.out:12078: LKE ==> LIKE
data/biojava-live-1.7.1/demos/files/wublast/tblastn.out:12226: LKE ==> LIKE
data/biojava-live-1.7.1/demos/files/wublast/tblastn.out:12307: EDE ==> EDGE
data/biojava-live-1.7.1/demos/files/wublast/tblastn.out:12326: EDE ==> EDGE
data/biojava-live-1.7.1/demos/files/wublast/tblastn.out:12337: EDE ==> EDGE
data/biojava-live-1.7.1/demos/files/wublast/tblastn.out:12419: LKE ==> LIKE
data/biojava-live-1.7.1/demos/files/wublast/tblastn.out:13129: DED ==> DEAD
data/biojava-live-1.7.1/demos/files/wublast/tblastn.out:13158: EDE ==> EDGE
data/biojava-live-1.7.1/demos/files/wublast/tblastn.out:13165: EDE ==> EDGE
data/biojava-live-1.7.1/demos/files/wublast/tblastn.out:13376: DED ==> DEAD
data/biojava-live-1.7.1/demos/files/wublast/tblastn.out:13443: EDE ==> EDGE
data/biojava-live-1.7.1/demos/files/wublast/tblastn.out:13649: EDE ==> EDGE
data/biojava-live-1.7.1/demos/files/wublast/tblastn.out:14193: EDE ==> EDGE
data/biojava-live-1.7.1/demos/files/wublast/tblastn.out:14204: EDE ==> EDGE
data/biojava-live-1.7.1/demos/files/wublast/tblastn.out:14240: EDE ==> EDGE
data/biojava-live-1.7.1/demos/files/wublast/tblastn.out:14244: EDE ==> EDGE
data/biojava-live-1.7.1/demos/files/wublast/tblastn.out:14244: DED ==> DEAD
data/biojava-live-1.7.1/demos/files/wublast/tblastn.out:14673: EDE ==> EDGE
data/biojava-live-1.7.1/demos/files/wublast/tblastn.out:15878: EDE ==> EDGE
data/biojava-live-1.7.1/demos/files/wublast/tblastn.out:16350: EDE ==> EDGE
data/biojava-live-1.7.1/demos/files/wublast/tblastn.out:16357: EDE ==> EDGE
data/biojava-live-1.7.1/demos/files/wublast/tblastn.out:16437: EDE ==> EDGE
data/biojava-live-1.7.1/demos/files/wublast/tblastn.out:16444: EDE ==> EDGE
data/biojava-live-1.7.1/demos/files/wublast/tblastn.out:16451: EDE ==> EDGE
data/biojava-live-1.7.1/demos/files/wublast/tblastn.out:16465: EDE ==> EDGE
data/biojava-live-1.7.1/demos/files/wublast/tblastn.out:16472: EDE ==> EDGE
data/biojava-live-1.7.1/demos/files/wublast/tblastn.out:16496: EDE ==> EDGE
data/biojava-live-1.7.1/demos/files/wublast/tblastn.out:16503: EDE ==> EDGE
data/biojava-live-1.7.1/demos/files/wublast/tblastn.out:16531: EDE ==> EDGE
data/biojava-live-1.7.1/demos/files/wublast/tblastn.out:16531: EDE ==> EDGE
data/biojava-live-1.7.1/demos/files/wublast/tblastn.out:16570: EDE ==> EDGE
data/biojava-live-1.7.1/demos/files/wublast/tblastn.out:16577: EDE ==> EDGE
data/biojava-live-1.7.1/demos/files/wublast/tblastn.out:16605: EDE ==> EDGE
data/biojava-live-1.7.1/demos/files/wublast/tblastn.out:16605: EDE ==> EDGE
data/biojava-live-1.7.1/demos/files/wublast/tblastn.out:16712: EDE ==> EDGE
data/biojava-live-1.7.1/demos/files/wublast/tblastn.out:16716: EDE ==> EDGE
data/biojava-live-1.7.1/demos/files/wublast/tblastn.out:16727: EDE ==> EDGE
data/biojava-live-1.7.1/demos/files/wublast/tblastn.out:16784: EDE ==> EDGE
data/biojava-live-1.7.1/demos/files/wublast/tblastn.out:17218: EDE ==> EDGE
data/biojava-live-1.7.1/demos/files/wublast/tblastn.out:17347: EDE ==> EDGE
data/biojava-live-1.7.1/demos/files/wublast/tblastn.out:17358: EDE ==> EDGE
data/biojava-live-1.7.1/demos/files/wublast/tblastn.out:17495: DED ==> DEAD
data/biojava-live-1.7.1/demos/files/wublast/tblastn.out:17509: DED ==> DEAD
data/biojava-live-1.7.1/demos/files/wublast/tblastn.out:18097: DED ==> DEAD
data/biojava-live-1.7.1/demos/files/wublast/tblastn.out:18111: DED ==> DEAD
data/biojava-live-1.7.1/demos/files/wublast/tblastn.out:18190: EDE ==> EDGE
data/biojava-live-1.7.1/demos/files/wublast/tblastn.out:18447: LKE ==> LIKE
data/biojava-live-1.7.1/demos/files/wublast/tblastn.out:18525: EDE ==> EDGE
data/biojava-live-1.7.1/demos/files/ncbiblast/tblastx.out:42: complet ==> complete
data/biojava-live-1.7.1/demos/files/ncbiblast/tblastx.out:317: ND ==> AND, 2ND
data/biojava-live-1.7.1/demos/files/ncbiblast/tblastx.out:318: ND ==> AND, 2ND
data/biojava-live-1.7.1/demos/files/ncbiblast/tblastx.out:319: ND ==> AND, 2ND
data/biojava-live-1.7.1/demos/files/ncbiblast/tblastx.out:4878: ALS ==> ALSO
data/biojava-live-1.7.1/demos/files/ncbiblast/tblastx.out:5550: EPTY ==> EMPTY
data/biojava-live-1.7.1/demos/files/ncbiblast/tblastx.out:10110: ALS ==> ALSO
data/biojava-live-1.7.1/demos/files/ncbiblast/tblastx.out:10692: TE ==> THE, BE, WE
data/biojava-live-1.7.1/demos/files/ncbiblast/tblastx.out:13040: THT ==> THE, THAT
data/biojava-live-1.7.1/demos/files/ncbiblast/blastp.out:69: LINKE ==> LINKED
data/biojava-live-1.7.1/demos/files/ncbiblast/unsuppVersionBlastn.out:63: complet ==> complete
data/biojava-live-1.7.1/demos/files/ncbiblast/unsuppVersionBlastn.out:114: complet ==> complete
data/biojava-live-1.7.1/demos/files/ncbiblast/blastx.out:60: ALPH ==> ALPHA
data/biojava-live-1.7.1/demos/files/ncbiblast/Massive.out:42: complet ==> complete
data/biojava-live-1.7.1/demos/files/ncbiblast/Massive.out:317: ND ==> AND, 2ND
data/biojava-live-1.7.1/demos/files/ncbiblast/Massive.out:318: ND ==> AND, 2ND
data/biojava-live-1.7.1/demos/files/ncbiblast/Massive.out:319: ND ==> AND, 2ND
data/biojava-live-1.7.1/demos/files/ncbiblast/Massive.out:4878: ALS ==> ALSO
data/biojava-live-1.7.1/demos/files/ncbiblast/Massive.out:5550: EPTY ==> EMPTY
data/biojava-live-1.7.1/demos/files/ncbiblast/Massive.out:10110: ALS ==> ALSO
data/biojava-live-1.7.1/demos/files/ncbiblast/Massive.out:10692: TE ==> THE, BE, WE
data/biojava-live-1.7.1/demos/files/ncbiblast/Massive.out:13040: THT ==> THE, THAT
data/biojava-live-1.7.1/demos/files/ncbiblast/Massive.out:13128: complet ==> complete
data/biojava-live-1.7.1/demos/files/ncbiblast/Massive.out:13403: ND ==> AND, 2ND
data/biojava-live-1.7.1/demos/files/ncbiblast/Massive.out:13404: ND ==> AND, 2ND
data/biojava-live-1.7.1/demos/files/ncbiblast/Massive.out:13405: ND ==> AND, 2ND
data/biojava-live-1.7.1/demos/files/ncbiblast/Massive.out:17964: ALS ==> ALSO
data/biojava-live-1.7.1/demos/files/ncbiblast/Massive.out:18636: EPTY ==> EMPTY
data/biojava-live-1.7.1/demos/files/ncbiblast/Massive.out:23196: ALS ==> ALSO
data/biojava-live-1.7.1/demos/files/ncbiblast/Massive.out:23778: TE ==> THE, BE, WE
data/biojava-live-1.7.1/demos/files/ncbiblast/Massive.out:26126: THT ==> THE, THAT
data/biojava-live-1.7.1/demos/files/ncbiblast/Massive.out:26214: complet ==> complete
data/biojava-live-1.7.1/demos/files/ncbiblast/Massive.out:26489: ND ==> AND, 2ND
data/biojava-live-1.7.1/demos/files/ncbiblast/Massive.out:26490: ND ==> AND, 2ND
data/biojava-live-1.7.1/demos/files/ncbiblast/Massive.out:26491: ND ==> AND, 2ND
data/biojava-live-1.7.1/demos/files/ncbiblast/Massive.out:31050: ALS ==> ALSO
data/biojava-live-1.7.1/demos/files/ncbiblast/Massive.out:31722: EPTY ==> EMPTY
data/biojava-live-1.7.1/demos/files/ncbiblast/Massive.out:36282: ALS ==> ALSO
data/biojava-live-1.7.1/demos/files/ncbiblast/Massive.out:36864: TE ==> THE, BE, WE
data/biojava-live-1.7.1/demos/files/ncbiblast/Massive.out:39212: THT ==> THE, THAT
data/biojava-live-1.7.1/demos/files/ncbiblast/Massive.out:39300: complet ==> complete
data/biojava-live-1.7.1/demos/files/ncbiblast/Massive.out:39575: ND ==> AND, 2ND
data/biojava-live-1.7.1/demos/files/ncbiblast/Massive.out:39576: ND ==> AND, 2ND
data/biojava-live-1.7.1/demos/files/ncbiblast/Massive.out:39577: ND ==> AND, 2ND
data/biojava-live-1.7.1/demos/files/ncbiblast/Massive.out:44136: ALS ==> ALSO
data/biojava-live-1.7.1/demos/files/ncbiblast/Massive.out:44808: EPTY ==> EMPTY
data/biojava-live-1.7.1/demos/files/ncbiblast/Massive.out:49368: ALS ==> ALSO
data/biojava-live-1.7.1/demos/files/ncbiblast/Massive.out:49950: TE ==> THE, BE, WE
data/biojava-live-1.7.1/demos/files/ncbiblast/Massive.out:52298: THT ==> THE, THAT
data/biojava-live-1.7.1/demos/files/ncbiblast/Massive.out:52386: complet ==> complete
data/biojava-live-1.7.1/demos/files/ncbiblast/Massive.out:52661: ND ==> AND, 2ND
data/biojava-live-1.7.1/demos/files/ncbiblast/Massive.out:52662: ND ==> AND, 2ND
data/biojava-live-1.7.1/demos/files/ncbiblast/Massive.out:52663: ND ==> AND, 2ND
data/biojava-live-1.7.1/demos/files/ncbiblast/Massive.out:57222: ALS ==> ALSO
data/biojava-live-1.7.1/demos/files/ncbiblast/Massive.out:57894: EPTY ==> EMPTY
data/biojava-live-1.7.1/demos/files/ncbiblast/Massive.out:62454: ALS ==> ALSO
data/biojava-live-1.7.1/demos/files/ncbiblast/Massive.out:63036: TE ==> THE, BE, WE
data/biojava-live-1.7.1/demos/files/ncbiblast/Massive.out:65384: THT ==> THE, THAT
data/biojava-live-1.7.1/demos/files/ncbiblast/Massive.out:65472: complet ==> complete
data/biojava-live-1.7.1/demos/files/ncbiblast/Massive.out:65747: ND ==> AND, 2ND
data/biojava-live-1.7.1/demos/files/ncbiblast/Massive.out:65748: ND ==> AND, 2ND
data/biojava-live-1.7.1/demos/files/ncbiblast/Massive.out:65749: ND ==> AND, 2ND
data/biojava-live-1.7.1/demos/files/ncbiblast/Massive.out:70308: ALS ==> ALSO
data/biojava-live-1.7.1/demos/files/ncbiblast/Massive.out:70980: EPTY ==> EMPTY
data/biojava-live-1.7.1/demos/files/ncbiblast/Massive.out:75540: ALS ==> ALSO
data/biojava-live-1.7.1/demos/files/ncbiblast/Massive.out:76122: TE ==> THE, BE, WE
data/biojava-live-1.7.1/demos/files/ncbiblast/Massive.out:78470: THT ==> THE, THAT
data/biojava-live-1.7.1/demos/files/ncbiblast/Massive.out:78558: complet ==> complete
data/biojava-live-1.7.1/demos/files/ncbiblast/Massive.out:78833: ND ==> AND, 2ND
data/biojava-live-1.7.1/demos/files/ncbiblast/Massive.out:78834: ND ==> AND, 2ND
data/biojava-live-1.7.1/demos/files/ncbiblast/Massive.out:78835: ND ==> AND, 2ND
data/biojava-live-1.7.1/demos/files/ncbiblast/Massive.out:83394: ALS ==> ALSO
data/biojava-live-1.7.1/demos/files/ncbiblast/Massive.out:84066: EPTY ==> EMPTY
data/biojava-live-1.7.1/demos/files/ncbiblast/Massive.out:88626: ALS ==> ALSO
data/biojava-live-1.7.1/demos/files/ncbiblast/Massive.out:89208: TE ==> THE, BE, WE
data/biojava-live-1.7.1/demos/files/ncbiblast/Massive.out:91556: THT ==> THE, THAT
data/biojava-live-1.7.1/demos/files/ncbiblast/Massive.out:91644: complet ==> complete
data/biojava-live-1.7.1/demos/files/ncbiblast/Massive.out:91919: ND ==> AND, 2ND
data/biojava-live-1.7.1/demos/files/ncbiblast/Massive.out:91920: ND ==> AND, 2ND
data/biojava-live-1.7.1/demos/files/ncbiblast/Massive.out:91921: ND ==> AND, 2ND
data/biojava-live-1.7.1/demos/files/ncbiblast/Massive.out:96480: ALS ==> ALSO
data/biojava-live-1.7.1/demos/files/ncbiblast/Massive.out:97152: EPTY ==> EMPTY
data/biojava-live-1.7.1/demos/files/ncbiblast/Massive.out:101712: ALS ==> ALSO
data/biojava-live-1.7.1/demos/files/ncbiblast/Massive.out:102294: TE ==> THE, BE, WE
data/biojava-live-1.7.1/demos/files/ncbiblast/Massive.out:104642: THT ==> THE, THAT
data/biojava-live-1.7.1/demos/files/ncbiblast/Massive.out:104730: complet ==> complete
data/biojava-live-1.7.1/demos/files/ncbiblast/Massive.out:105005: ND ==> AND, 2ND
data/biojava-live-1.7.1/demos/files/ncbiblast/Massive.out:105006: ND ==> AND, 2ND
data/biojava-live-1.7.1/demos/files/ncbiblast/Massive.out:105007: ND ==> AND, 2ND
data/biojava-live-1.7.1/demos/files/ncbiblast/Massive.out:109566: ALS ==> ALSO
data/biojava-live-1.7.1/demos/files/ncbiblast/Massive.out:110238: EPTY ==> EMPTY
data/biojava-live-1.7.1/demos/files/ncbiblast/Massive.out:114798: ALS ==> ALSO
data/biojava-live-1.7.1/demos/files/ncbiblast/Massive.out:115380: TE ==> THE, BE, WE
data/biojava-live-1.7.1/demos/files/ncbiblast/Massive.out:117728: THT ==> THE, THAT
data/biojava-live-1.7.1/demos/files/ncbiblast/Massive.out:117816: complet ==> complete
data/biojava-live-1.7.1/demos/files/ncbiblast/Massive.out:118091: ND ==> AND, 2ND
data/biojava-live-1.7.1/demos/files/ncbiblast/Massive.out:118092: ND ==> AND, 2ND
data/biojava-live-1.7.1/demos/files/ncbiblast/Massive.out:118093: ND ==> AND, 2ND
data/biojava-live-1.7.1/demos/files/ncbiblast/Massive.out:122652: ALS ==> ALSO
data/biojava-live-1.7.1/demos/files/ncbiblast/Massive.out:123324: EPTY ==> EMPTY
data/biojava-live-1.7.1/demos/files/ncbiblast/Massive.out:127884: ALS ==> ALSO
data/biojava-live-1.7.1/demos/files/ncbiblast/Massive.out:128466: TE ==> THE, BE, WE
data/biojava-live-1.7.1/demos/files/ncbiblast/Massive.out:130814: THT ==> THE, THAT
data/biojava-live-1.7.1/demos/files/ncbiblast/Massive.out:130902: complet ==> complete
data/biojava-live-1.7.1/demos/files/ncbiblast/Massive.out:131177: ND ==> AND, 2ND
data/biojava-live-1.7.1/demos/files/ncbiblast/Massive.out:131178: ND ==> AND, 2ND
data/biojava-live-1.7.1/demos/files/ncbiblast/Massive.out:131179: ND ==> AND, 2ND
data/biojava-live-1.7.1/demos/files/ncbiblast/Massive.out:135738: ALS ==> ALSO
data/biojava-live-1.7.1/demos/files/ncbiblast/Massive.out:136410: EPTY ==> EMPTY
data/biojava-live-1.7.1/demos/files/ncbiblast/Massive.out:140970: ALS ==> ALSO
data/biojava-live-1.7.1/demos/files/ncbiblast/Massive.out:141552: TE ==> THE, BE, WE
data/biojava-live-1.7.1/demos/files/ncbiblast/Massive.out:143900: THT ==> THE, THAT
data/biojava-live-1.7.1/demos/files/ncbiblast/Massive.out:143988: complet ==> complete
data/biojava-live-1.7.1/demos/files/ncbiblast/Massive.out:144263: ND ==> AND, 2ND
data/biojava-live-1.7.1/demos/files/ncbiblast/Massive.out:144264: ND ==> AND, 2ND
data/biojava-live-1.7.1/demos/files/ncbiblast/Massive.out:144265: ND ==> AND, 2ND
data/biojava-live-1.7.1/demos/files/ncbiblast/Massive.out:148824: ALS ==> ALSO
data/biojava-live-1.7.1/demos/files/ncbiblast/Massive.out:149496: EPTY ==> EMPTY
data/biojava-live-1.7.1/demos/files/ncbiblast/Massive.out:154056: ALS ==> ALSO
data/biojava-live-1.7.1/demos/files/ncbiblast/Massive.out:154638: TE ==> THE, BE, WE
data/biojava-live-1.7.1/demos/files/ncbiblast/Massive.out:156986: THT ==> THE, THAT
data/biojava-live-1.7.1/demos/files/ncbiblast/Massive.out:157074: complet ==> complete
data/biojava-live-1.7.1/demos/files/ncbiblast/Massive.out:157349: ND ==> AND, 2ND
data/biojava-live-1.7.1/demos/files/ncbiblast/Massive.out:157350: ND ==> AND, 2ND
data/biojava-live-1.7.1/demos/files/ncbiblast/Massive.out:157351: ND ==> AND, 2ND
data/biojava-live-1.7.1/demos/files/ncbiblast/Massive.out:161910: ALS ==> ALSO
data/biojava-live-1.7.1/demos/files/ncbiblast/Massive.out:162582: EPTY ==> EMPTY
data/biojava-live-1.7.1/demos/files/ncbiblast/Massive.out:167142: ALS ==> ALSO
data/biojava-live-1.7.1/demos/files/ncbiblast/Massive.out:167724: TE ==> THE, BE, WE
data/biojava-live-1.7.1/demos/files/ncbiblast/Massive.out:170072: THT ==> THE, THAT
data/biojava-live-1.7.1/demos/files/ncbiblast/Massive.out:170160: complet ==> complete
data/biojava-live-1.7.1/demos/files/ncbiblast/Massive.out:170435: ND ==> AND, 2ND
data/biojava-live-1.7.1/demos/files/ncbiblast/Massive.out:170436: ND ==> AND, 2ND
data/biojava-live-1.7.1/demos/files/ncbiblast/Massive.out:170437: ND ==> AND, 2ND
data/biojava-live-1.7.1/demos/files/ncbiblast/Massive.out:174996: ALS ==> ALSO
data/biojava-live-1.7.1/demos/files/ncbiblast/Massive.out:175668: EPTY ==> EMPTY
data/biojava-live-1.7.1/demos/files/ncbiblast/Massive.out:180228: ALS ==> ALSO
data/biojava-live-1.7.1/demos/files/ncbiblast/Massive.out:180810: TE ==> THE, BE, WE
data/biojava-live-1.7.1/demos/files/ncbiblast/Massive.out:183158: THT ==> THE, THAT
data/biojava-live-1.7.1/demos/files/ncbiblast/Massive.out:183246: complet ==> complete
data/biojava-live-1.7.1/demos/files/ncbiblast/Massive.out:183521: ND ==> AND, 2ND
data/biojava-live-1.7.1/demos/files/ncbiblast/Massive.out:183522: ND ==> AND, 2ND
data/biojava-live-1.7.1/demos/files/ncbiblast/Massive.out:183523: ND ==> AND, 2ND
data/biojava-live-1.7.1/demos/files/ncbiblast/Massive.out:188082: ALS ==> ALSO
data/biojava-live-1.7.1/demos/files/ncbiblast/Massive.out:188754: EPTY ==> EMPTY
data/biojava-live-1.7.1/demos/files/ncbiblast/Massive.out:193314: ALS ==> ALSO
data/biojava-live-1.7.1/demos/files/ncbiblast/Massive.out:193896: TE ==> THE, BE, WE
data/biojava-live-1.7.1/demos/files/ncbiblast/Massive.out:196244: THT ==> THE, THAT
data/biojava-live-1.7.1/demos/files/ncbiblast/Massive.out:196332: complet ==> complete
data/biojava-live-1.7.1/demos/files/ncbiblast/Massive.out:196607: ND ==> AND, 2ND
data/biojava-live-1.7.1/demos/files/ncbiblast/Massive.out:196608: ND ==> AND, 2ND
data/biojava-live-1.7.1/demos/files/ncbiblast/Massive.out:196609: ND ==> AND, 2ND
data/biojava-live-1.7.1/demos/files/ncbiblast/Massive.out:201168: ALS ==> ALSO
data/biojava-live-1.7.1/demos/files/ncbiblast/Massive.out:201840: EPTY ==> EMPTY
data/biojava-live-1.7.1/demos/files/ncbiblast/Massive.out:206400: ALS ==> ALSO
data/biojava-live-1.7.1/demos/files/ncbiblast/Massive.out:206982: TE ==> THE, BE, WE
data/biojava-live-1.7.1/demos/files/ncbiblast/Massive.out:209330: THT ==> THE, THAT
data/biojava-live-1.7.1/demos/files/ncbiblast/Massive.out:209418: complet ==> complete
data/biojava-live-1.7.1/demos/files/ncbiblast/Massive.out:209693: ND ==> AND, 2ND
data/biojava-live-1.7.1/demos/files/ncbiblast/Massive.out:209694: ND ==> AND, 2ND
data/biojava-live-1.7.1/demos/files/ncbiblast/Massive.out:209695: ND ==> AND, 2ND
data/biojava-live-1.7.1/demos/files/ncbiblast/Massive.out:214254: ALS ==> ALSO
data/biojava-live-1.7.1/demos/files/ncbiblast/Massive.out:214926: EPTY ==> EMPTY
data/biojava-live-1.7.1/demos/files/ncbiblast/Massive.out:219486: ALS ==> ALSO
data/biojava-live-1.7.1/demos/files/ncbiblast/Massive.out:220068: TE ==> THE, BE, WE
data/biojava-live-1.7.1/demos/files/ncbiblast/Massive.out:222416: THT ==> THE, THAT
data/biojava-live-1.7.1/demos/files/ncbiblast/Massive.out:222504: complet ==> complete
data/biojava-live-1.7.1/demos/files/ncbiblast/Massive.out:222779: ND ==> AND, 2ND
data/biojava-live-1.7.1/demos/files/ncbiblast/Massive.out:222780: ND ==> AND, 2ND
data/biojava-live-1.7.1/demos/files/ncbiblast/Massive.out:222781: ND ==> AND, 2ND
data/biojava-live-1.7.1/demos/files/ncbiblast/Massive.out:227340: ALS ==> ALSO
data/biojava-live-1.7.1/demos/files/ncbiblast/Massive.out:228012: EPTY ==> EMPTY
data/biojava-live-1.7.1/demos/files/ncbiblast/Massive.out:232572: ALS ==> ALSO
data/biojava-live-1.7.1/demos/files/ncbiblast/Massive.out:233154: TE ==> THE, BE, WE
data/biojava-live-1.7.1/demos/files/ncbiblast/Massive.out:235502: THT ==> THE, THAT
data/biojava-live-1.7.1/demos/files/ncbiblast/Massive.out:235590: complet ==> complete
data/biojava-live-1.7.1/demos/files/ncbiblast/Massive.out:235865: ND ==> AND, 2ND
data/biojava-live-1.7.1/demos/files/ncbiblast/Massive.out:235866: ND ==> AND, 2ND
data/biojava-live-1.7.1/demos/files/ncbiblast/Massive.out:235867: ND ==> AND, 2ND
data/biojava-live-1.7.1/demos/files/ncbiblast/Massive.out:240426: ALS ==> ALSO
data/biojava-live-1.7.1/demos/files/ncbiblast/Massive.out:241098: EPTY ==> EMPTY
data/biojava-live-1.7.1/demos/files/ncbiblast/Massive.out:245658: ALS ==> ALSO
data/biojava-live-1.7.1/demos/files/ncbiblast/Massive.out:246240: TE ==> THE, BE, WE
data/biojava-live-1.7.1/demos/files/ncbiblast/Massive.out:248588: THT ==> THE, THAT
data/biojava-live-1.7.1/demos/files/ncbiblast/Massive.out:248676: complet ==> complete
data/biojava-live-1.7.1/demos/files/ncbiblast/Massive.out:248951: ND ==> AND, 2ND
data/biojava-live-1.7.1/demos/files/ncbiblast/Massive.out:248952: ND ==> AND, 2ND
data/biojava-live-1.7.1/demos/files/ncbiblast/Massive.out:248953: ND ==> AND, 2ND
data/biojava-live-1.7.1/demos/files/ncbiblast/Massive.out:253512: ALS ==> ALSO
data/biojava-live-1.7.1/demos/files/ncbiblast/Massive.out:254184: EPTY ==> EMPTY
data/biojava-live-1.7.1/demos/files/ncbiblast/Massive.out:258744: ALS ==> ALSO
data/biojava-live-1.7.1/demos/files/ncbiblast/Massive.out:259326: TE ==> THE, BE, WE
data/biojava-live-1.7.1/demos/files/ncbiblast/Massive.out:261674: THT ==> THE, THAT
data/biojava-live-1.7.1/demos/files/ncbiblast/Massive.out:261762: complet ==> complete
data/biojava-live-1.7.1/demos/files/ncbiblast/Massive.out:262037: ND ==> AND, 2ND
data/biojava-live-1.7.1/demos/files/ncbiblast/Massive.out:262038: ND ==> AND, 2ND
data/biojava-live-1.7.1/demos/files/ncbiblast/Massive.out:262039: ND ==> AND, 2ND
data/biojava-live-1.7.1/demos/files/ncbiblast/Massive.out:266598: ALS ==> ALSO
data/biojava-live-1.7.1/demos/files/ncbiblast/Massive.out:267270: EPTY ==> EMPTY
data/biojava-live-1.7.1/demos/files/ncbiblast/Massive.out:271830: ALS ==> ALSO
data/biojava-live-1.7.1/demos/files/ncbiblast/Massive.out:272412: TE ==> THE, BE, WE
data/biojava-live-1.7.1/demos/files/ncbiblast/Massive.out:274760: THT ==> THE, THAT
data/biojava-live-1.7.1/demos/files/ncbiblast/Massive.out:274848: complet ==> complete
data/biojava-live-1.7.1/demos/files/ncbiblast/Massive.out:275123: ND ==> AND, 2ND
data/biojava-live-1.7.1/demos/files/ncbiblast/Massive.out:275124: ND ==> AND, 2ND
data/biojava-live-1.7.1/demos/files/ncbiblast/Massive.out:275125: ND ==> AND, 2ND
data/biojava-live-1.7.1/demos/files/ncbiblast/Massive.out:279684: ALS ==> ALSO
data/biojava-live-1.7.1/demos/files/ncbiblast/Massive.out:280356: EPTY ==> EMPTY
data/biojava-live-1.7.1/demos/files/ncbiblast/Massive.out:284916: ALS ==> ALSO
data/biojava-live-1.7.1/demos/files/ncbiblast/Massive.out:285498: TE ==> THE, BE, WE
data/biojava-live-1.7.1/demos/files/ncbiblast/Massive.out:287846: THT ==> THE, THAT
data/biojava-live-1.7.1/demos/files/ncbiblast/blastn.out:63: complet ==> complete
data/biojava-live-1.7.1/demos/files/ncbiblast/blastn.out:114: complet ==> complete
data/biojava-live-1.7.1/demos/files/ncbiblast/tblastn.out:35: complet ==> complete
data/biojava-live-1.7.1/demos/files/ncbiblast/tblastn.out:128: complet ==> complete
data/biojava-live-1.7.1/demos/files/ncbiblast/tblastn.out:152: complet ==> complete
data/biojava-live-1.7.1/demos/files/GCG/blast.report:166: fro ==> for, from
data/biojava-live-1.7.1/demos/files/GCG/blast.report:276: fro ==> for, from
data/biojava-live-1.7.1/demos/files/GCG/blast.report:314: complet ==> complete
data/biojava-live-1.7.1/demos/files/GCG/blast.report:316: complet ==> complete
data/biojava-live-1.7.1/demos/files/GCG/blast.report:318: fro ==> for, from
data/biojava-live-1.7.1/demos/files/GCG/blast.report:328: fro ==> for, from
data/biojava-live-1.7.1/demos/files/GCG/blast.report:334: fro ==> for, from
data/biojava-live-1.7.1/demos/files/GCG/blast.report:338: complet ==> complete
data/biojava-live-1.7.1/demos/files/GCG/blast.report:668: fro ==> for, from
data/biojava-live-1.7.1/demos/files/GCG/blast.report:676: fro ==> for, from
data/biojava-live-1.7.1/demos/files/GCG/blast.report:680: fro ==> for, from
data/biojava-live-1.7.1/demos/files/GCG/blast.report:682: fro ==> for, from
data/biojava-live-1.7.1/demos/files/GCG/blast.report:718: fro ==> for, from
data/biojava-live-1.7.1/demos/files/GCG/blast.report:724: fro ==> for, from
data/biojava-live-1.7.1/demos/files/GCG/blast.report:1022: complet ==> complete
data/biojava-live-1.7.1/demos/files/GCG/blast.report:1026: fo ==> of, for
data/biojava-live-1.7.1/demos/files/GCG/blast.report:1052: alph ==> alpha
data/biojava-live-1.7.1/demos/files/GCG/blast.report:1110: complet ==> complete
data/biojava-live-1.7.1/demos/files/GCG/blast.report:1442: fro ==> for, from
data/biojava-live-1.7.1/demos/files/GCG/blast.report:1446: fro ==> for, from
data/biojava-live-1.7.1/demos/files/GCG/blast.report:1454: complet ==> complete
data/biojava-live-1.7.1/demos/files/GCG/blast.report:1462: fro ==> for, from
data/biojava-live-1.7.1/demos/files/GCG/blast.report:1474: fro ==> for, from
data/biojava-live-1.7.1/demos/files/GCG/blast.report:1476: fro ==> for, from
data/biojava-live-1.7.1/demos/files/GCG/blast.report:1486: fro ==> for, from
data/biojava-live-1.7.1/demos/files/GCG/blast.report:1488: fro ==> for, from
data/biojava-live-1.7.1/demos/files/GCG/blast.report:1514: fro ==> for, from
data/biojava-live-1.7.1/demos/files/GCG/blast.report:1550: fro ==> for, from
data/biojava-live-1.7.1/demos/files/GCG/blast.report:1570: fro ==> for, from
data/biojava-live-1.7.1/demos/files/GCG/blast.report:1600: fro ==> for, from
data/biojava-live-1.7.1/resources/obda/naming/core.xml:6: reprsented ==> represented
data/biojava-live-1.7.1/resources/obda/naming/core.xml:14: useage ==> usage
data/biojava-live-1.7.1/resources/obda/naming/core.xml:29: reprsented ==> represented
data/biojava-live-1.7.1/resources/obda/naming/core.xml:82: differnt ==> different
data/biojava-live-1.7.1/resources/obda/naming/core.xml:95: deffinition ==> definition
data/biojava-live-1.7.1/resources/org/biojava/bio/seq/TranslationTables.xml:9: ser ==> set
data/biojava-live-1.7.1/resources/org/biojava/bio/seq/TranslationTables.xml:10: ser ==> set
data/biojava-live-1.7.1/resources/org/biojava/bio/seq/TranslationTables.xml:11: ser ==> set
data/biojava-live-1.7.1/resources/org/biojava/bio/seq/TranslationTables.xml:12: ser ==> set
data/biojava-live-1.7.1/resources/org/biojava/bio/seq/TranslationTables.xml:51: ser ==> set
data/biojava-live-1.7.1/resources/org/biojava/bio/seq/TranslationTables.xml:52: ser ==> set
data/biojava-live-1.7.1/resources/org/biojava/bio/seq/TranslationTables.xml:81: ser ==> set
data/biojava-live-1.7.1/resources/org/biojava/bio/seq/TranslationTables.xml:82: ser ==> set
data/biojava-live-1.7.1/resources/org/biojava/bio/seq/TranslationTables.xml:83: ser ==> set
data/biojava-live-1.7.1/resources/org/biojava/bio/seq/TranslationTables.xml:84: ser ==> set
data/biojava-live-1.7.1/resources/org/biojava/bio/seq/TranslationTables.xml:123: ser ==> set
data/biojava-live-1.7.1/resources/org/biojava/bio/seq/TranslationTables.xml:124: ser ==> set
data/biojava-live-1.7.1/resources/org/biojava/bio/seq/TranslationTables.xml:153: ser ==> set
data/biojava-live-1.7.1/resources/org/biojava/bio/seq/TranslationTables.xml:154: ser ==> set
data/biojava-live-1.7.1/resources/org/biojava/bio/seq/TranslationTables.xml:155: ser ==> set
data/biojava-live-1.7.1/resources/org/biojava/bio/seq/TranslationTables.xml:156: ser ==> set
data/biojava-live-1.7.1/resources/org/biojava/bio/seq/TranslationTables.xml:195: ser ==> set
data/biojava-live-1.7.1/resources/org/biojava/bio/seq/TranslationTables.xml:196: ser ==> set
data/biojava-live-1.7.1/resources/org/biojava/bio/seq/TranslationTables.xml:225: ser ==> set
data/biojava-live-1.7.1/resources/org/biojava/bio/seq/TranslationTables.xml:226: ser ==> set
data/biojava-live-1.7.1/resources/org/biojava/bio/seq/TranslationTables.xml:227: ser ==> set
data/biojava-live-1.7.1/resources/org/biojava/bio/seq/TranslationTables.xml:228: ser ==> set
data/biojava-live-1.7.1/resources/org/biojava/bio/seq/TranslationTables.xml:267: ser ==> set
data/biojava-live-1.7.1/resources/org/biojava/bio/seq/TranslationTables.xml:268: ser ==> set
data/biojava-live-1.7.1/resources/org/biojava/bio/seq/TranslationTables.xml:297: ser ==> set
data/biojava-live-1.7.1/resources/org/biojava/bio/seq/TranslationTables.xml:298: ser ==> set
data/biojava-live-1.7.1/resources/org/biojava/bio/seq/TranslationTables.xml:299: ser ==> set
data/biojava-live-1.7.1/resources/org/biojava/bio/seq/TranslationTables.xml:300: ser ==> set
data/biojava-live-1.7.1/resources/org/biojava/bio/seq/TranslationTables.xml:339: ser ==> set
data/biojava-live-1.7.1/resources/org/biojava/bio/seq/TranslationTables.xml:340: ser ==> set
data/biojava-live-1.7.1/resources/org/biojava/bio/seq/TranslationTables.xml:341: ser ==> set
data/biojava-live-1.7.1/resources/org/biojava/bio/seq/TranslationTables.xml:342: ser ==> set
data/biojava-live-1.7.1/resources/org/biojava/bio/seq/TranslationTables.xml:369: ser ==> set
data/biojava-live-1.7.1/resources/org/biojava/bio/seq/TranslationTables.xml:370: ser ==> set
data/biojava-live-1.7.1/resources/org/biojava/bio/seq/TranslationTables.xml:371: ser ==> set
data/biojava-live-1.7.1/resources/org/biojava/bio/seq/TranslationTables.xml:372: ser ==> set
data/biojava-live-1.7.1/resources/org/biojava/bio/seq/TranslationTables.xml:411: ser ==> set
data/biojava-live-1.7.1/resources/org/biojava/bio/seq/TranslationTables.xml:412: ser ==> set
data/biojava-live-1.7.1/resources/org/biojava/bio/seq/TranslationTables.xml:443: ser ==> set
data/biojava-live-1.7.1/resources/org/biojava/bio/seq/TranslationTables.xml:444: ser ==> set
data/biojava-live-1.7.1/resources/org/biojava/bio/seq/TranslationTables.xml:445: ser ==> set
data/biojava-live-1.7.1/resources/org/biojava/bio/seq/TranslationTables.xml:446: ser ==> set
data/biojava-live-1.7.1/resources/org/biojava/bio/seq/TranslationTables.xml:485: ser ==> set
data/biojava-live-1.7.1/resources/org/biojava/bio/seq/TranslationTables.xml:486: ser ==> set
data/biojava-live-1.7.1/resources/org/biojava/bio/seq/TranslationTables.xml:487: ser ==> set
data/biojava-live-1.7.1/resources/org/biojava/bio/seq/TranslationTables.xml:488: ser ==> set
data/biojava-live-1.7.1/resources/org/biojava/bio/seq/TranslationTables.xml:515: ser ==> set
data/biojava-live-1.7.1/resources/org/biojava/bio/seq/TranslationTables.xml:516: ser ==> set
data/biojava-live-1.7.1/resources/org/biojava/bio/seq/TranslationTables.xml:517: ser ==> set
data/biojava-live-1.7.1/resources/org/biojava/bio/seq/TranslationTables.xml:518: ser ==> set
data/biojava-live-1.7.1/resources/org/biojava/bio/seq/TranslationTables.xml:557: ser ==> set
data/biojava-live-1.7.1/resources/org/biojava/bio/seq/TranslationTables.xml:558: ser ==> set
data/biojava-live-1.7.1/resources/org/biojava/bio/seq/TranslationTables.xml:587: ser ==> set
data/biojava-live-1.7.1/resources/org/biojava/bio/seq/TranslationTables.xml:588: ser ==> set
data/biojava-live-1.7.1/resources/org/biojava/bio/seq/TranslationTables.xml:589: ser ==> set
data/biojava-live-1.7.1/resources/org/biojava/bio/seq/TranslationTables.xml:590: ser ==> set
data/biojava-live-1.7.1/resources/org/biojava/bio/seq/TranslationTables.xml:629: ser ==> set
data/biojava-live-1.7.1/resources/org/biojava/bio/seq/TranslationTables.xml:630: ser ==> set
data/biojava-live-1.7.1/resources/org/biojava/bio/seq/TranslationTables.xml:659: ser ==> set
data/biojava-live-1.7.1/resources/org/biojava/bio/seq/TranslationTables.xml:660: ser ==> set
data/biojava-live-1.7.1/resources/org/biojava/bio/seq/TranslationTables.xml:661: ser ==> set
data/biojava-live-1.7.1/resources/org/biojava/bio/seq/TranslationTables.xml:662: ser ==> set
data/biojava-live-1.7.1/resources/org/biojava/bio/seq/TranslationTables.xml:675: ser ==> set
data/biojava-live-1.7.1/resources/org/biojava/bio/seq/TranslationTables.xml:701: ser ==> set
data/biojava-live-1.7.1/resources/org/biojava/bio/seq/TranslationTables.xml:702: ser ==> set
data/biojava-live-1.7.1/resources/org/biojava/bio/seq/TranslationTables.xml:731: ser ==> set
data/biojava-live-1.7.1/resources/org/biojava/bio/seq/TranslationTables.xml:732: ser ==> set
data/biojava-live-1.7.1/resources/org/biojava/bio/seq/TranslationTables.xml:733: ser ==> set
data/biojava-live-1.7.1/resources/org/biojava/bio/seq/TranslationTables.xml:734: ser ==> set
data/biojava-live-1.7.1/resources/org/biojava/bio/seq/TranslationTables.xml:773: ser ==> set
data/biojava-live-1.7.1/resources/org/biojava/bio/seq/TranslationTables.xml:774: ser ==> set
data/biojava-live-1.7.1/resources/org/biojava/bio/seq/TranslationTables.xml:803: ser ==> set
data/biojava-live-1.7.1/resources/org/biojava/bio/seq/TranslationTables.xml:804: ser ==> set
data/biojava-live-1.7.1/resources/org/biojava/bio/seq/TranslationTables.xml:805: ser ==> set
data/biojava-live-1.7.1/resources/org/biojava/bio/seq/TranslationTables.xml:806: ser ==> set
data/biojava-live-1.7.1/resources/org/biojava/bio/seq/TranslationTables.xml:845: ser ==> set
data/biojava-live-1.7.1/resources/org/biojava/bio/seq/TranslationTables.xml:846: ser ==> set
data/biojava-live-1.7.1/resources/org/biojava/bio/seq/TranslationTables.xml:847: ser ==> set
data/biojava-live-1.7.1/resources/org/biojava/bio/seq/TranslationTables.xml:848: ser ==> set
data/biojava-live-1.7.1/resources/org/biojava/bio/seq/TranslationTables.xml:875: ser ==> set
data/biojava-live-1.7.1/resources/org/biojava/bio/seq/TranslationTables.xml:876: ser ==> set
data/biojava-live-1.7.1/resources/org/biojava/bio/seq/TranslationTables.xml:877: ser ==> set
data/biojava-live-1.7.1/resources/org/biojava/bio/seq/TranslationTables.xml:878: ser ==> set
data/biojava-live-1.7.1/resources/org/biojava/bio/seq/TranslationTables.xml:917: ser ==> set
data/biojava-live-1.7.1/resources/org/biojava/bio/seq/TranslationTables.xml:918: ser ==> set
data/biojava-live-1.7.1/resources/org/biojava/bio/seq/TranslationTables.xml:947: ser ==> set
data/biojava-live-1.7.1/resources/org/biojava/bio/seq/TranslationTables.xml:948: ser ==> set
data/biojava-live-1.7.1/resources/org/biojava/bio/seq/TranslationTables.xml:949: ser ==> set
data/biojava-live-1.7.1/resources/org/biojava/bio/seq/TranslationTables.xml:950: ser ==> set
data/biojava-live-1.7.1/resources/org/biojava/bio/seq/TranslationTables.xml:989: ser ==> set
data/biojava-live-1.7.1/resources/org/biojava/bio/seq/TranslationTables.xml:990: ser ==> set
data/biojava-live-1.7.1/resources/org/biojava/bio/seq/TranslationTables.xml:1019: ser ==> set
data/biojava-live-1.7.1/resources/org/biojava/bio/seq/TranslationTables.xml:1020: ser ==> set
data/biojava-live-1.7.1/resources/org/biojava/bio/seq/TranslationTables.xml:1021: ser ==> set
data/biojava-live-1.7.1/resources/org/biojava/bio/seq/TranslationTables.xml:1022: ser ==> set
data/biojava-live-1.7.1/resources/org/biojava/bio/seq/TranslationTables.xml:1061: ser ==> set
data/biojava-live-1.7.1/resources/org/biojava/bio/seq/TranslationTables.xml:1062: ser ==> set
data/biojava-live-1.7.1/resources/org/biojava/bio/seq/TranslationTables.xml:1063: ser ==> set
data/biojava-live-1.7.1/resources/org/biojava/bio/seq/TranslationTables.xml:1064: ser ==> set
data/biojava-live-1.7.1/resources/org/biojava/bio/seq/TranslationTables.xml:1091: ser ==> set
data/biojava-live-1.7.1/resources/org/biojava/bio/seq/TranslationTables.xml:1092: ser ==> set
data/biojava-live-1.7.1/resources/org/biojava/bio/seq/TranslationTables.xml:1094: ser ==> set
data/biojava-live-1.7.1/resources/org/biojava/bio/seq/TranslationTables.xml:1133: ser ==> set
data/biojava-live-1.7.1/resources/org/biojava/bio/seq/TranslationTables.xml:1134: ser ==> set
data/biojava-live-1.7.1/resources/org/biojava/bio/seq/TranslationTables.xml:1163: ser ==> set
data/biojava-live-1.7.1/resources/org/biojava/bio/seq/TranslationTables.xml:1164: ser ==> set
data/biojava-live-1.7.1/resources/org/biojava/bio/seq/TranslationTables.xml:1165: ser ==> set
data/biojava-live-1.7.1/resources/org/biojava/bio/seq/TranslationTables.xml:1166: ser ==> set
data/biojava-live-1.7.1/resources/org/biojava/bio/seq/TranslationTables.xml:1205: ser ==> set
data/biojava-live-1.7.1/resources/org/biojava/bio/seq/TranslationTables.xml:1206: ser ==> set
data/biojava-live-1.7.1/resources/org/biojava/bio/symbol/AlphabetManager.xml:498: SER ==> SET
data/biojava-live-1.7.1/resources/org/biojava/bio/symbol/AlphabetManager.xml:574: SER ==> SET
data/biojava-live-1.7.1/resources/org/biojava/bio/symbol/AlphabetManager.xml:611: SER ==> SET
data/biojava-live-1.7.1/resources/org/biojava/bio/symbol/AlphabetManager.xml:722: SER ==> SET
data/biojava-live-1.7.1/resources/org/biojava/bio/symbol/AlphabetManager.xml:759: SER ==> SET
data/biojava-live-1.7.1/resources/org/biojava/bio/symbol/AlphabetManager.xml:784: SER ==> SET
data/biojava-live-1.7.1/resources/org/biojava/bio/symbol/AlphabetManager.xml:889: Ser ==> Set
data/biojava-live-1.7.1/resources/org/biojava/bio/symbol/AlphabetManager.xml:890: SER ==> SET
data/biojava-live-1.7.1/resources/org/biojava/bio/symbol/AlphabetManager.xml:927: SER ==> SET
data/biojava-live-1.7.1/resources/org/biojava/bio/symbol/AlphabetManager.xml:952: SER ==> SET
data/biojava-live-1.7.1/resources/org/biojava/bio/structure/standardaminos.pdb:122: SER ==> SET
data/biojava-live-1.7.1/resources/org/biojava/bio/structure/standardaminos.pdb:123: SER ==> SET
data/biojava-live-1.7.1/resources/org/biojava/bio/structure/standardaminos.pdb:124: SER ==> SET
data/biojava-live-1.7.1/resources/org/biojava/bio/structure/standardaminos.pdb:125: SER ==> SET
data/biojava-live-1.7.1/resources/org/biojava/bio/structure/standardaminos.pdb:126: SER ==> SET
data/biojava-live-1.7.1/resources/org/biojava/bio/structure/standardaminos.pdb:127: SER ==> SET
data/biojava-live-1.7.1/resources/org/biojava/bio/molbio/rebase_common.dat:25: Suh ==> Such
data/biojava-live-1.7.1/resources/org/biojava/bio/molbio/rebase_common.dat:26: Suh ==> Such
data/biojava-live-1.7.1/resources/org/biojava/bio/molbio/rebase_common.dat:191: Cann ==> Can
data/biojava-live-1.7.1/resources/org/biojava/bio/molbio/rebase_common.dat:340: Claus ==> Clause
data/biojava-live-1.7.1/resources/org/biojava/bio/program/sax/blastxml/NCBI_BlastOutput.mod:411: formating ==> formatting
data/biojava-live-1.7.1/resources/org/biojava/ontology/core.list.pred:3: opperations ==> operations
data/biojava-live-1.7.1/resources/org/biojava/ontology/core.set.pred:10: opperations ==> operations
data/biojava-live-1.7.1/resources/org/biojava/ontology/core.agregate.pred:1: agregate ==> aggregate
data/biojava-live-1.7.1/resources/org/biojava/ontology/core.agregate.pred:3: Agregate ==> Aggregate
data/biojava-live-1.7.1/resources/org/biojava/ontology/core.agregate.pred:6: agregate ==> aggregate
data/biojava-live-1.7.1/resources/org/biojava/ontology/core.agregate.pred:7: agregate ==> aggregate
data/biojava-live-1.7.1/resources/org/biojava/ontology/core.agregate.pred:8: agregate ==> aggregate
data/biojava-live-1.7.1/resources/org/biojava/ontology/core.agregate.pred:10: Agregate ==> Aggregate
data/biojava-live-1.7.1/resources/org/biojava/ontology/core.agregate.pred:11: agregate ==> aggregate
data/biojava-live-1.7.1/resources/org/biojava/ontology/core.agregate.pred:13: Agregate ==> Aggregate
data/biojava-live-1.7.1/resources/org/biojava/ontology/core.agregate.pred:14: agregate ==> aggregate
data/biojava-live-1.7.1/resources/org/biojava/ontology/core.agregate.pred:17: Agregate ==> Aggregate
data/biojava-live-1.7.1/resources/org/biojava/ontology/core.agregate.pred:18: agregate ==> aggregate
data/biojava-live-1.7.1/resources/org/biojava/ontology/core.agregate.pred:20: agregate ==> aggregate
data/biojava-live-1.7.1/resources/org/biojava/ontology/core.agregate.pred:22: agregate ==> aggregate
data/biojava-live-1.7.1/resources/org/biojava/ontology/core.agregate.pred:24: agregate ==> aggregate
data/biojava-live-1.7.1/resources/org/biojava/ontology/core.agregate.pred:25: agregate ==> aggregate
data/biojava-live-1.7.1/resources/org/biojava/ontology/core.agregate.pred:26: agregate ==> aggregate
data/biojava-live-1.7.1/resources/org/biojava/ontology/core.agregate.pred:36: agregate ==> aggregate
data/biojava-live-1.7.1/resources/org/biojava/ontology/core.agregate.pred:37: agregate ==> aggregate
data/biojava-live-1.7.1/resources/org/biojava/ontology/core.agregate.pred:38: agregate ==> aggregate
data/biojava-live-1.7.1/resources/org/biojava/ontology/core.pred:16: doman ==> domain
data/biojava-live-1.7.1/resources/org/biojava/ontology/core.pred:207: finaly ==> finally, finale
data/biojava-live-1.7.1/dtd/BlastLikeDataSetCollection.dtd:24: sofware ==> software
data/biojava-live-1.7.1/debian/changelog:78: missleading ==> misleading
data/biojava-live-1.7.1/debian/copyright:12: Waring ==> Warning
data/biojava-live-1.7.1/debian/rules:65: independant ==> independent