data/cct-1.0.0/conf/project_settings.conf:184: betweeen ==> between
data/cct-1.0.0/conf/project_settings_cds_vs_cds.conf:184: betweeen ==> between
data/cct-1.0.0/conf/project_settings_dna_vs_dna.conf:184: betweeen ==> between
data/cct-1.0.0/conf/project_settings_multi.conf:184: betweeen ==> between
data/cct-1.0.0/lib/perl_modules/Util/LogManager.pm:144: Sting ==> String
data/cct-1.0.0/lib/scripts/cgview_xml_builder/test_input/R_denitrificans.gbk:555: lonD ==> long
data/cct-1.0.0/lib/scripts/cgview_xml_builder/test_input/R_denitrificans.gbk:565: lonD ==> long
data/cct-1.0.0/lib/scripts/cgview_xml_builder/test_input/R_denitrificans.gbk:3378: mathces ==> matches
data/cct-1.0.0/lib/scripts/cgview_xml_builder/test_input/R_denitrificans.gbk:3708: fliE ==> file
data/cct-1.0.0/lib/scripts/cgview_xml_builder/test_input/R_denitrificans.gbk:8321: SIE ==> SIZE, SIGH
data/cct-1.0.0/lib/scripts/cgview_xml_builder/test_input/R_denitrificans.gbk:8409: matchs ==> matches
data/cct-1.0.0/lib/scripts/cgview_xml_builder/test_input/R_denitrificans.gbk:9417: DAA ==> DATA
data/cct-1.0.0/lib/scripts/cgview_xml_builder/test_input/R_denitrificans.gbk:9537: garD ==> guard
data/cct-1.0.0/lib/scripts/cgview_xml_builder/test_input/R_denitrificans.gbk:9554: garD ==> guard
data/cct-1.0.0/lib/scripts/cgview_xml_builder/test_input/R_denitrificans.gbk:10455: thiD ==> this
data/cct-1.0.0/lib/scripts/cgview_xml_builder/test_input/R_denitrificans.gbk:10512: thiE ==> the, this
data/cct-1.0.0/lib/scripts/cgview_xml_builder/test_input/R_denitrificans.gbk:14091: inconsistant ==> inconsistent
data/cct-1.0.0/lib/scripts/cgview_xml_builder/test_input/R_denitrificans.gbk:19053: consistant ==> consistent
data/cct-1.0.0/lib/scripts/cgview_xml_builder/test_input/R_denitrificans.gbk:19693: seperate ==> separate
data/cct-1.0.0/lib/scripts/cgview_xml_builder/test_input/R_denitrificans.gbk:21452: norE ==> nor, more
data/cct-1.0.0/lib/scripts/cgview_xml_builder/test_input/R_denitrificans.gbk:21458: NorE ==> nor, more
data/cct-1.0.0/lib/scripts/cgview_xml_builder/test_input/R_denitrificans.gbk:23296: ALS ==> ALSO
data/cct-1.0.0/lib/scripts/cgview_xml_builder/test_input/R_denitrificans.gbk:24463: fro ==> for, from
data/cct-1.0.0/lib/scripts/cgview_xml_builder/test_input/R_denitrificans.gbk:26973: resemblence ==> resemblance
data/cct-1.0.0/lib/scripts/cgview_xml_builder/test_input/R_denitrificans.gbk:27127: consistant ==> consistent
data/cct-1.0.0/lib/scripts/cgview_xml_builder/test_input/R_denitrificans.gbk:27654: throug ==> through
data/cct-1.0.0/lib/scripts/cgview_xml_builder/test_input/R_denitrificans.gbk:28871: Holliday ==> Holiday
data/cct-1.0.0/lib/scripts/cgview_xml_builder/test_input/R_denitrificans.gbk:28885: Holliday ==> Holiday
data/cct-1.0.0/lib/scripts/cgview_xml_builder/test_input/R_denitrificans.gbk:29197: varing ==> varying
data/cct-1.0.0/lib/scripts/cgview_xml_builder/test_input/R_denitrificans.gbk:36426: fro ==> for, from
data/cct-1.0.0/lib/scripts/cgview_xml_builder/test_input/R_denitrificans.gbk:37709: thiE ==> the, this
data/cct-1.0.0/lib/scripts/cgview_xml_builder/test_input/R_denitrificans.gbk:38172: inconsistant ==> inconsistent
data/cct-1.0.0/lib/scripts/cgview_xml_builder/test_input/R_denitrificans.gbk:38173: possiblities ==> possibilities
data/cct-1.0.0/lib/scripts/cgview_xml_builder/test_input/R_denitrificans.gbk:40123: formate ==> format
data/cct-1.0.0/lib/scripts/cgview_xml_builder/test_input/R_denitrificans.gbk:40128: formate ==> format
data/cct-1.0.0/lib/scripts/cgview_xml_builder/test_input/R_denitrificans.gbk:40145: formate ==> format
data/cct-1.0.0/lib/scripts/cgview_xml_builder/test_input/R_denitrificans.gbk:40160: formate ==> format
data/cct-1.0.0/lib/scripts/cgview_xml_builder/test_input/R_denitrificans.gbk:40790: similiarty ==> similarity
data/cct-1.0.0/lib/scripts/cgview_xml_builder/test_input/R_denitrificans.gbk:40922: Stong ==> Strong
data/cct-1.0.0/lib/scripts/cgview_xml_builder/test_input/R_denitrificans.gbk:41017: upto ==> up to
data/cct-1.0.0/lib/scripts/cgview_xml_builder/test_input/R_denitrificans.gbk:41192: fpr ==> for, far, fps
data/cct-1.0.0/lib/scripts/cgview_xml_builder/test_input/R_denitrificans.gbk:41201: fpr ==> for, far, fps
data/cct-1.0.0/lib/scripts/cgview_xml_builder/test_input/R_denitrificans.gbk:41745: consistant ==> consistent
data/cct-1.0.0/lib/scripts/cgview_xml_builder/test_input/R_denitrificans.gbk:42030: possibilites ==> possibilities
data/cct-1.0.0/lib/scripts/cgview_xml_builder/test_input/R_denitrificans.gbk:43391: consistant ==> consistent
data/cct-1.0.0/lib/scripts/cgview_xml_builder/test_input/R_denitrificans.gbk:44503: throug ==> through
data/cct-1.0.0/lib/scripts/cgview_xml_builder/test_input/R_denitrificans.gbk:46436: consistantly ==> consistently
data/cct-1.0.0/lib/scripts/cgview_xml_builder/test_input/R_denitrificans.gbk:47504: formate ==> format
data/cct-1.0.0/lib/scripts/cgview_xml_builder/test_input/R_denitrificans.gbk:47508: formate ==> format
data/cct-1.0.0/lib/scripts/cgview_xml_builder/test_input/R_denitrificans.gbk:48752: temination ==> termination
data/cct-1.0.0/lib/scripts/cgview_xml_builder/test_input/R_denitrificans.gbk:49679: Ser ==> Set
data/cct-1.0.0/lib/scripts/cgview_xml_builder/test_input/R_denitrificans.gbk:50284: thiD ==> this
data/cct-1.0.0/lib/scripts/cgview_xml_builder/test_input/R_denitrificans.gbk:56838: tha ==> than, that, the
data/cct-1.0.0/lib/scripts/cgview_xml_builder/test_input/R_denitrificans.gbk:56858: tha ==> than, that, the
data/cct-1.0.0/lib/scripts/cgview_xml_builder/test_input/R_denitrificans.gbk:56882: tha ==> than, that, the
data/cct-1.0.0/lib/scripts/cgview_xml_builder/test_input/R_denitrificans.gbk:58590: inconsistant ==> inconsistent
data/cct-1.0.0/lib/scripts/cgview_xml_builder/test_input/R_denitrificans.gbk:58860: preceeding ==> preceding, proceeding
data/cct-1.0.0/lib/scripts/cgview_xml_builder/test_input/R_denitrificans.gbk:59139: formate ==> format
data/cct-1.0.0/lib/scripts/cgview_xml_builder/test_input/R_denitrificans.gbk:59154: formate ==> format
data/cct-1.0.0/lib/scripts/cgview_xml_builder/test_input/R_denitrificans.gbk:59162: formate ==> format
data/cct-1.0.0/lib/scripts/cgview_xml_builder/test_input/prokka_multicontig.gbk:48647: fliE ==> file
data/cct-1.0.0/lib/scripts/cgview_xml_builder/test_input/prokka_multicontig.gbk:48653: FliE ==> file
data/cct-1.0.0/lib/scripts/cgview_xml_builder/test_input/prokka_multicontig.gbk:59684: Formate ==> Format
data/cct-1.0.0/lib/scripts/cgview_xml_builder/test_input/prokka_multicontig.gbk:79925: garD ==> guard
data/cct-1.0.0/lib/scripts/cgview_xml_builder/test_input/prokka_multicontig.gbk:80709: folX ==> folks
data/cct-1.0.0/lib/scripts/cgview_xml_builder/test_input/prokka_multicontig.gbk:82194: formate ==> format
data/cct-1.0.0/lib/scripts/cgview_xml_builder/test_input/prokka_multicontig.gbk:108743: tesE ==> these
data/cct-1.0.0/lib/scripts/cgview_xml_builder/test_input/prokka_multicontig.gbk:120939: thiD ==> this
data/cct-1.0.0/lib/scripts/cgview_xml_builder/test_input/prokka_multicontig.gbk:120954: thiE ==> the, this
data/cct-1.0.0/lib/scripts/cgview_xml_builder/test_input/prokka_multicontig.gbk:145916: hda ==> had
data/cct-1.0.0/lib/scripts/cgview_xml_builder/test_input/prokka_multicontig.gbk:145922: Hda ==> Had
data/cct-1.0.0/lib/scripts/cgview_xml_builder/test_input/prokka_multicontig.gbk:175952: queE ==> queue
data/cct-1.0.0/lib/scripts/cgview_xml_builder/test_input/prokka_multicontig.gbk:176064: Holliday ==> Holiday
data/cct-1.0.0/lib/scripts/cgview_xml_builder/test_input/prokka_multicontig.gbk:176081: Holliday ==> Holiday
data/cct-1.0.0/lib/scripts/cgview_xml_builder/test_input/prokka_multicontig.gbk:196681: Formate ==> Format
data/cct-1.0.0/lib/scripts/cgview_xml_builder/test_input/prokka_multicontig.gbk:196694: Formate ==> Format
data/cct-1.0.0/lib/scripts/cgview_xml_builder/test_input/prokka_multicontig.gbk:196717: Formate ==> Format
data/cct-1.0.0/lib/scripts/cgview_xml_builder/test_input/prokka_multicontig.gbk:196731: Formate ==> Format
data/cct-1.0.0/lib/scripts/get_cds/sample_output/R_denitrificans.cds.faa:571: fpr ==> for, far, fps
data/cct-1.0.0/lib/scripts/get_cds/sample_output/R_denitrificans.cds.faa:574: fpr ==> for, far, fps
data/cct-1.0.0/lib/scripts/get_cds/sample_output/R_denitrificans.cds.faa:697: thiE ==> the, this
data/cct-1.0.0/lib/scripts/get_cds/sample_output/R_denitrificans.cds.faa:2023: fliE ==> file
data/cct-1.0.0/lib/scripts/get_cds/sample_output/R_denitrificans.cds.faa:2464: thiD ==> this
data/cct-1.0.0/lib/scripts/get_cds/sample_output/R_denitrificans.cds.faa:3964: thiE ==> the, this
data/cct-1.0.0/lib/scripts/get_cds/sample_output/R_denitrificans.cds.faa:3970: thiD ==> this
data/cct-1.0.0/lib/scripts/get_cds/sample_output/R_denitrificans.cds.faa:6622: garD ==> guard
data/cct-1.0.0/lib/scripts/get_cds/sample_output/R_denitrificans.cds.faa:6997: norE ==> nor, more
data/cct-1.0.0/lib/scripts/get_cds/sample_output/R_denitrificans.cds.faa:8302: lonD ==> long
data/cct-1.0.0/lib/scripts/get_cds/sample_output/R_denitrificans.cds.faa:10507: lonD ==> long
data/cct-1.0.0/lib/scripts/get_cds/sample_output/R_denitrificans.cds.faa:10834: garD ==> guard
data/cct-1.0.0/lib/scripts/get_cds/sample_output/R_denitrificans.cds.fna:571: fpr ==> for, far, fps
data/cct-1.0.0/lib/scripts/get_cds/sample_output/R_denitrificans.cds.fna:574: fpr ==> for, far, fps
data/cct-1.0.0/lib/scripts/get_cds/sample_output/R_denitrificans.cds.fna:697: thiE ==> the, this
data/cct-1.0.0/lib/scripts/get_cds/sample_output/R_denitrificans.cds.fna:2023: fliE ==> file
data/cct-1.0.0/lib/scripts/get_cds/sample_output/R_denitrificans.cds.fna:2464: thiD ==> this
data/cct-1.0.0/lib/scripts/get_cds/sample_output/R_denitrificans.cds.fna:3964: thiE ==> the, this
data/cct-1.0.0/lib/scripts/get_cds/sample_output/R_denitrificans.cds.fna:3970: thiD ==> this
data/cct-1.0.0/lib/scripts/get_cds/sample_output/R_denitrificans.cds.fna:6622: garD ==> guard
data/cct-1.0.0/lib/scripts/get_cds/sample_output/R_denitrificans.cds.fna:6997: norE ==> nor, more
data/cct-1.0.0/lib/scripts/get_cds/sample_output/R_denitrificans.cds.fna:8302: lonD ==> long
data/cct-1.0.0/lib/scripts/get_cds/sample_output/R_denitrificans.cds.fna:10507: lonD ==> long
data/cct-1.0.0/lib/scripts/get_cds/sample_output/R_denitrificans.cds.fna:10834: garD ==> guard
data/cct-1.0.0/lib/scripts/get_cds/sample_output/prokka_multicontig.cds.faa:1807: garD ==> guard
data/cct-1.0.0/lib/scripts/get_cds/sample_output/prokka_multicontig.cds.faa:2236: fliE ==> file
data/cct-1.0.0/lib/scripts/get_cds/sample_output/prokka_multicontig.cds.faa:4231: thiD ==> this
data/cct-1.0.0/lib/scripts/get_cds/sample_output/prokka_multicontig.cds.faa:6979: hda ==> had
data/cct-1.0.0/lib/scripts/get_cds/sample_output/prokka_multicontig.cds.faa:7375: thiE ==> the, this
data/cct-1.0.0/lib/scripts/get_cds/sample_output/prokka_multicontig.cds.faa:7555: tesE ==> these
data/cct-1.0.0/lib/scripts/get_cds/sample_output/prokka_multicontig.cds.faa:10519: folX ==> folks
data/cct-1.0.0/lib/scripts/get_cds/sample_output/prokka_multicontig.cds.faa:11962: queE ==> queue
data/cct-1.0.0/lib/scripts/get_cds/sample_output/prokka_multicontig.cds.fna:1807: garD ==> guard
data/cct-1.0.0/lib/scripts/get_cds/sample_output/prokka_multicontig.cds.fna:2236: fliE ==> file
data/cct-1.0.0/lib/scripts/get_cds/sample_output/prokka_multicontig.cds.fna:4231: thiD ==> this
data/cct-1.0.0/lib/scripts/get_cds/sample_output/prokka_multicontig.cds.fna:6979: hda ==> had
data/cct-1.0.0/lib/scripts/get_cds/sample_output/prokka_multicontig.cds.fna:7375: thiE ==> the, this
data/cct-1.0.0/lib/scripts/get_cds/sample_output/prokka_multicontig.cds.fna:7555: tesE ==> these
data/cct-1.0.0/lib/scripts/get_cds/sample_output/prokka_multicontig.cds.fna:10519: folX ==> folks
data/cct-1.0.0/lib/scripts/get_cds/sample_output/prokka_multicontig.cds.fna:11962: queE ==> queue
data/cct-1.0.0/lib/scripts/get_cds/test_input/R_denitrificans.gbk:555: lonD ==> long
data/cct-1.0.0/lib/scripts/get_cds/test_input/R_denitrificans.gbk:565: lonD ==> long
data/cct-1.0.0/lib/scripts/get_cds/test_input/R_denitrificans.gbk:3378: mathces ==> matches
data/cct-1.0.0/lib/scripts/get_cds/test_input/R_denitrificans.gbk:3708: fliE ==> file
data/cct-1.0.0/lib/scripts/get_cds/test_input/R_denitrificans.gbk:8321: SIE ==> SIZE, SIGH
data/cct-1.0.0/lib/scripts/get_cds/test_input/R_denitrificans.gbk:8409: matchs ==> matches
data/cct-1.0.0/lib/scripts/get_cds/test_input/R_denitrificans.gbk:9417: DAA ==> DATA
data/cct-1.0.0/lib/scripts/get_cds/test_input/R_denitrificans.gbk:9537: garD ==> guard
data/cct-1.0.0/lib/scripts/get_cds/test_input/R_denitrificans.gbk:9554: garD ==> guard
data/cct-1.0.0/lib/scripts/get_cds/test_input/R_denitrificans.gbk:10455: thiD ==> this
data/cct-1.0.0/lib/scripts/get_cds/test_input/R_denitrificans.gbk:10512: thiE ==> the, this
data/cct-1.0.0/lib/scripts/get_cds/test_input/R_denitrificans.gbk:14091: inconsistant ==> inconsistent
data/cct-1.0.0/lib/scripts/get_cds/test_input/R_denitrificans.gbk:19053: consistant ==> consistent
data/cct-1.0.0/lib/scripts/get_cds/test_input/R_denitrificans.gbk:19693: seperate ==> separate
data/cct-1.0.0/lib/scripts/get_cds/test_input/R_denitrificans.gbk:21452: norE ==> nor, more
data/cct-1.0.0/lib/scripts/get_cds/test_input/R_denitrificans.gbk:21458: NorE ==> nor, more
data/cct-1.0.0/lib/scripts/get_cds/test_input/R_denitrificans.gbk:23296: ALS ==> ALSO
data/cct-1.0.0/lib/scripts/get_cds/test_input/R_denitrificans.gbk:24463: fro ==> for, from
data/cct-1.0.0/lib/scripts/get_cds/test_input/R_denitrificans.gbk:26973: resemblence ==> resemblance
data/cct-1.0.0/lib/scripts/get_cds/test_input/R_denitrificans.gbk:27127: consistant ==> consistent
data/cct-1.0.0/lib/scripts/get_cds/test_input/R_denitrificans.gbk:27654: throug ==> through
data/cct-1.0.0/lib/scripts/get_cds/test_input/R_denitrificans.gbk:28871: Holliday ==> Holiday
data/cct-1.0.0/lib/scripts/get_cds/test_input/R_denitrificans.gbk:28885: Holliday ==> Holiday
data/cct-1.0.0/lib/scripts/get_cds/test_input/R_denitrificans.gbk:29197: varing ==> varying
data/cct-1.0.0/lib/scripts/get_cds/test_input/R_denitrificans.gbk:36426: fro ==> for, from
data/cct-1.0.0/lib/scripts/get_cds/test_input/R_denitrificans.gbk:37709: thiE ==> the, this
data/cct-1.0.0/lib/scripts/get_cds/test_input/R_denitrificans.gbk:38172: inconsistant ==> inconsistent
data/cct-1.0.0/lib/scripts/get_cds/test_input/R_denitrificans.gbk:38173: possiblities ==> possibilities
data/cct-1.0.0/lib/scripts/get_cds/test_input/R_denitrificans.gbk:40123: formate ==> format
data/cct-1.0.0/lib/scripts/get_cds/test_input/R_denitrificans.gbk:40128: formate ==> format
data/cct-1.0.0/lib/scripts/get_cds/test_input/R_denitrificans.gbk:40145: formate ==> format
data/cct-1.0.0/lib/scripts/get_cds/test_input/R_denitrificans.gbk:40160: formate ==> format
data/cct-1.0.0/lib/scripts/get_cds/test_input/R_denitrificans.gbk:40790: similiarty ==> similarity
data/cct-1.0.0/lib/scripts/get_cds/test_input/R_denitrificans.gbk:40922: Stong ==> Strong
data/cct-1.0.0/lib/scripts/get_cds/test_input/R_denitrificans.gbk:41017: upto ==> up to
data/cct-1.0.0/lib/scripts/get_cds/test_input/R_denitrificans.gbk:41192: fpr ==> for, far, fps
data/cct-1.0.0/lib/scripts/get_cds/test_input/R_denitrificans.gbk:41201: fpr ==> for, far, fps
data/cct-1.0.0/lib/scripts/get_cds/test_input/R_denitrificans.gbk:41745: consistant ==> consistent
data/cct-1.0.0/lib/scripts/get_cds/test_input/R_denitrificans.gbk:42030: possibilites ==> possibilities
data/cct-1.0.0/lib/scripts/get_cds/test_input/R_denitrificans.gbk:43391: consistant ==> consistent
data/cct-1.0.0/lib/scripts/get_cds/test_input/R_denitrificans.gbk:44503: throug ==> through
data/cct-1.0.0/lib/scripts/get_cds/test_input/R_denitrificans.gbk:46436: consistantly ==> consistently
data/cct-1.0.0/lib/scripts/get_cds/test_input/R_denitrificans.gbk:47504: formate ==> format
data/cct-1.0.0/lib/scripts/get_cds/test_input/R_denitrificans.gbk:47508: formate ==> format
data/cct-1.0.0/lib/scripts/get_cds/test_input/R_denitrificans.gbk:48752: temination ==> termination
data/cct-1.0.0/lib/scripts/get_cds/test_input/R_denitrificans.gbk:49679: Ser ==> Set
data/cct-1.0.0/lib/scripts/get_cds/test_input/R_denitrificans.gbk:50284: thiD ==> this
data/cct-1.0.0/lib/scripts/get_cds/test_input/R_denitrificans.gbk:56838: tha ==> than, that, the
data/cct-1.0.0/lib/scripts/get_cds/test_input/R_denitrificans.gbk:56858: tha ==> than, that, the
data/cct-1.0.0/lib/scripts/get_cds/test_input/R_denitrificans.gbk:56882: tha ==> than, that, the
data/cct-1.0.0/lib/scripts/get_cds/test_input/R_denitrificans.gbk:58590: inconsistant ==> inconsistent
data/cct-1.0.0/lib/scripts/get_cds/test_input/R_denitrificans.gbk:58860: preceeding ==> preceding, proceeding
data/cct-1.0.0/lib/scripts/get_cds/test_input/R_denitrificans.gbk:59139: formate ==> format
data/cct-1.0.0/lib/scripts/get_cds/test_input/R_denitrificans.gbk:59154: formate ==> format
data/cct-1.0.0/lib/scripts/get_cds/test_input/R_denitrificans.gbk:59162: formate ==> format
data/cct-1.0.0/lib/scripts/get_cds/test_input/prokka_multicontig.gbk:48647: fliE ==> file
data/cct-1.0.0/lib/scripts/get_cds/test_input/prokka_multicontig.gbk:48653: FliE ==> file
data/cct-1.0.0/lib/scripts/get_cds/test_input/prokka_multicontig.gbk:59684: Formate ==> Format
data/cct-1.0.0/lib/scripts/get_cds/test_input/prokka_multicontig.gbk:79925: garD ==> guard
data/cct-1.0.0/lib/scripts/get_cds/test_input/prokka_multicontig.gbk:80709: folX ==> folks
data/cct-1.0.0/lib/scripts/get_cds/test_input/prokka_multicontig.gbk:82194: formate ==> format
data/cct-1.0.0/lib/scripts/get_cds/test_input/prokka_multicontig.gbk:108743: tesE ==> these
data/cct-1.0.0/lib/scripts/get_cds/test_input/prokka_multicontig.gbk:120939: thiD ==> this
data/cct-1.0.0/lib/scripts/get_cds/test_input/prokka_multicontig.gbk:120954: thiE ==> the, this
data/cct-1.0.0/lib/scripts/get_cds/test_input/prokka_multicontig.gbk:145916: hda ==> had
data/cct-1.0.0/lib/scripts/get_cds/test_input/prokka_multicontig.gbk:145922: Hda ==> Had
data/cct-1.0.0/lib/scripts/get_cds/test_input/prokka_multicontig.gbk:175952: queE ==> queue
data/cct-1.0.0/lib/scripts/get_cds/test_input/prokka_multicontig.gbk:176064: Holliday ==> Holiday
data/cct-1.0.0/lib/scripts/get_cds/test_input/prokka_multicontig.gbk:176081: Holliday ==> Holiday
data/cct-1.0.0/lib/scripts/get_cds/test_input/prokka_multicontig.gbk:196681: Formate ==> Format
data/cct-1.0.0/lib/scripts/get_cds/test_input/prokka_multicontig.gbk:196694: Formate ==> Format
data/cct-1.0.0/lib/scripts/get_cds/test_input/prokka_multicontig.gbk:196717: Formate ==> Format
data/cct-1.0.0/lib/scripts/get_cds/test_input/prokka_multicontig.gbk:196731: Formate ==> Format
data/cct-1.0.0/lib/scripts/get_orfs/test_input/R_denitrificans.gbk:555: lonD ==> long
data/cct-1.0.0/lib/scripts/get_orfs/test_input/R_denitrificans.gbk:565: lonD ==> long
data/cct-1.0.0/lib/scripts/get_orfs/test_input/R_denitrificans.gbk:3378: mathces ==> matches
data/cct-1.0.0/lib/scripts/get_orfs/test_input/R_denitrificans.gbk:3708: fliE ==> file
data/cct-1.0.0/lib/scripts/get_orfs/test_input/R_denitrificans.gbk:8321: SIE ==> SIZE, SIGH
data/cct-1.0.0/lib/scripts/get_orfs/test_input/R_denitrificans.gbk:8409: matchs ==> matches
data/cct-1.0.0/lib/scripts/get_orfs/test_input/R_denitrificans.gbk:9417: DAA ==> DATA
data/cct-1.0.0/lib/scripts/get_orfs/test_input/R_denitrificans.gbk:9537: garD ==> guard
data/cct-1.0.0/lib/scripts/get_orfs/test_input/R_denitrificans.gbk:9554: garD ==> guard
data/cct-1.0.0/lib/scripts/get_orfs/test_input/R_denitrificans.gbk:10455: thiD ==> this
data/cct-1.0.0/lib/scripts/get_orfs/test_input/R_denitrificans.gbk:10512: thiE ==> the, this
data/cct-1.0.0/lib/scripts/get_orfs/test_input/R_denitrificans.gbk:14091: inconsistant ==> inconsistent
data/cct-1.0.0/lib/scripts/get_orfs/test_input/R_denitrificans.gbk:19053: consistant ==> consistent
data/cct-1.0.0/lib/scripts/get_orfs/test_input/R_denitrificans.gbk:19693: seperate ==> separate
data/cct-1.0.0/lib/scripts/get_orfs/test_input/R_denitrificans.gbk:21452: norE ==> nor, more
data/cct-1.0.0/lib/scripts/get_orfs/test_input/R_denitrificans.gbk:21458: NorE ==> nor, more
data/cct-1.0.0/lib/scripts/get_orfs/test_input/R_denitrificans.gbk:23296: ALS ==> ALSO
data/cct-1.0.0/lib/scripts/get_orfs/test_input/R_denitrificans.gbk:24463: fro ==> for, from
data/cct-1.0.0/lib/scripts/get_orfs/test_input/R_denitrificans.gbk:26973: resemblence ==> resemblance
data/cct-1.0.0/lib/scripts/get_orfs/test_input/R_denitrificans.gbk:27127: consistant ==> consistent
data/cct-1.0.0/lib/scripts/get_orfs/test_input/R_denitrificans.gbk:27654: throug ==> through
data/cct-1.0.0/lib/scripts/get_orfs/test_input/R_denitrificans.gbk:28871: Holliday ==> Holiday
data/cct-1.0.0/lib/scripts/get_orfs/test_input/R_denitrificans.gbk:28885: Holliday ==> Holiday
data/cct-1.0.0/lib/scripts/get_orfs/test_input/R_denitrificans.gbk:29197: varing ==> varying
data/cct-1.0.0/lib/scripts/get_orfs/test_input/R_denitrificans.gbk:36426: fro ==> for, from
data/cct-1.0.0/lib/scripts/get_orfs/test_input/R_denitrificans.gbk:37709: thiE ==> the, this
data/cct-1.0.0/lib/scripts/get_orfs/test_input/R_denitrificans.gbk:38172: inconsistant ==> inconsistent
data/cct-1.0.0/lib/scripts/get_orfs/test_input/R_denitrificans.gbk:38173: possiblities ==> possibilities
data/cct-1.0.0/lib/scripts/get_orfs/test_input/R_denitrificans.gbk:40123: formate ==> format
data/cct-1.0.0/lib/scripts/get_orfs/test_input/R_denitrificans.gbk:40128: formate ==> format
data/cct-1.0.0/lib/scripts/get_orfs/test_input/R_denitrificans.gbk:40145: formate ==> format
data/cct-1.0.0/lib/scripts/get_orfs/test_input/R_denitrificans.gbk:40160: formate ==> format
data/cct-1.0.0/lib/scripts/get_orfs/test_input/R_denitrificans.gbk:40790: similiarty ==> similarity
data/cct-1.0.0/lib/scripts/get_orfs/test_input/R_denitrificans.gbk:40922: Stong ==> Strong
data/cct-1.0.0/lib/scripts/get_orfs/test_input/R_denitrificans.gbk:41017: upto ==> up to
data/cct-1.0.0/lib/scripts/get_orfs/test_input/R_denitrificans.gbk:41192: fpr ==> for, far, fps
data/cct-1.0.0/lib/scripts/get_orfs/test_input/R_denitrificans.gbk:41201: fpr ==> for, far, fps
data/cct-1.0.0/lib/scripts/get_orfs/test_input/R_denitrificans.gbk:41745: consistant ==> consistent
data/cct-1.0.0/lib/scripts/get_orfs/test_input/R_denitrificans.gbk:42030: possibilites ==> possibilities
data/cct-1.0.0/lib/scripts/get_orfs/test_input/R_denitrificans.gbk:43391: consistant ==> consistent
data/cct-1.0.0/lib/scripts/get_orfs/test_input/R_denitrificans.gbk:44503: throug ==> through
data/cct-1.0.0/lib/scripts/get_orfs/test_input/R_denitrificans.gbk:46436: consistantly ==> consistently
data/cct-1.0.0/lib/scripts/get_orfs/test_input/R_denitrificans.gbk:47504: formate ==> format
data/cct-1.0.0/lib/scripts/get_orfs/test_input/R_denitrificans.gbk:47508: formate ==> format
data/cct-1.0.0/lib/scripts/get_orfs/test_input/R_denitrificans.gbk:48752: temination ==> termination
data/cct-1.0.0/lib/scripts/get_orfs/test_input/R_denitrificans.gbk:49679: Ser ==> Set
data/cct-1.0.0/lib/scripts/get_orfs/test_input/R_denitrificans.gbk:50284: thiD ==> this
data/cct-1.0.0/lib/scripts/get_orfs/test_input/R_denitrificans.gbk:56838: tha ==> than, that, the
data/cct-1.0.0/lib/scripts/get_orfs/test_input/R_denitrificans.gbk:56858: tha ==> than, that, the
data/cct-1.0.0/lib/scripts/get_orfs/test_input/R_denitrificans.gbk:56882: tha ==> than, that, the
data/cct-1.0.0/lib/scripts/get_orfs/test_input/R_denitrificans.gbk:58590: inconsistant ==> inconsistent
data/cct-1.0.0/lib/scripts/get_orfs/test_input/R_denitrificans.gbk:58860: preceeding ==> preceding, proceeding
data/cct-1.0.0/lib/scripts/get_orfs/test_input/R_denitrificans.gbk:59139: formate ==> format
data/cct-1.0.0/lib/scripts/get_orfs/test_input/R_denitrificans.gbk:59154: formate ==> format
data/cct-1.0.0/lib/scripts/get_orfs/test_input/R_denitrificans.gbk:59162: formate ==> format
data/cct-1.0.0/lib/scripts/get_orfs/test_input/prokka_multicontig.gbk:48647: fliE ==> file
data/cct-1.0.0/lib/scripts/get_orfs/test_input/prokka_multicontig.gbk:48653: FliE ==> file
data/cct-1.0.0/lib/scripts/get_orfs/test_input/prokka_multicontig.gbk:59684: Formate ==> Format
data/cct-1.0.0/lib/scripts/get_orfs/test_input/prokka_multicontig.gbk:79925: garD ==> guard
data/cct-1.0.0/lib/scripts/get_orfs/test_input/prokka_multicontig.gbk:80709: folX ==> folks
data/cct-1.0.0/lib/scripts/get_orfs/test_input/prokka_multicontig.gbk:82194: formate ==> format
data/cct-1.0.0/lib/scripts/get_orfs/test_input/prokka_multicontig.gbk:108743: tesE ==> these
data/cct-1.0.0/lib/scripts/get_orfs/test_input/prokka_multicontig.gbk:120939: thiD ==> this
data/cct-1.0.0/lib/scripts/get_orfs/test_input/prokka_multicontig.gbk:120954: thiE ==> the, this
data/cct-1.0.0/lib/scripts/get_orfs/test_input/prokka_multicontig.gbk:145916: hda ==> had
data/cct-1.0.0/lib/scripts/get_orfs/test_input/prokka_multicontig.gbk:145922: Hda ==> Had
data/cct-1.0.0/lib/scripts/get_orfs/test_input/prokka_multicontig.gbk:175952: queE ==> queue
data/cct-1.0.0/lib/scripts/get_orfs/test_input/prokka_multicontig.gbk:176064: Holliday ==> Holiday
data/cct-1.0.0/lib/scripts/get_orfs/test_input/prokka_multicontig.gbk:176081: Holliday ==> Holiday
data/cct-1.0.0/lib/scripts/get_orfs/test_input/prokka_multicontig.gbk:196681: Formate ==> Format
data/cct-1.0.0/lib/scripts/get_orfs/test_input/prokka_multicontig.gbk:196694: Formate ==> Format
data/cct-1.0.0/lib/scripts/get_orfs/test_input/prokka_multicontig.gbk:196717: Formate ==> Format
data/cct-1.0.0/lib/scripts/get_orfs/test_input/prokka_multicontig.gbk:196731: Formate ==> Format
data/cct-1.0.0/lib/scripts/local_blast_client/test_input/test_protein_database.fasta:10: DNE ==> DONE
data/cct-1.0.0/lib/scripts/local_blast_client/test_input/test_protein_database.fasta:21: DNE ==> DONE
data/cct-1.0.0/sample_projects/sample_project_2/comparison_genomes/Methanococcus_maripaludis.gbk:415: probabilty ==> probability
data/cct-1.0.0/sample_projects/sample_project_2/comparison_genomes/Methanococcus_maripaludis.gbk:1106: FO ==> OF, FOR
data/cct-1.0.0/sample_projects/sample_project_2/comparison_genomes/Methanococcus_maripaludis.gbk:1128: FO ==> OF, FOR
data/cct-1.0.0/sample_projects/sample_project_2/comparison_genomes/Methanococcus_maripaludis.gbk:2121: probabilty ==> probability
data/cct-1.0.0/sample_projects/sample_project_2/comparison_genomes/Methanococcus_maripaludis.gbk:2149: probabilty ==> probability
data/cct-1.0.0/sample_projects/sample_project_2/comparison_genomes/Methanococcus_maripaludis.gbk:2705: formate ==> format
data/cct-1.0.0/sample_projects/sample_project_2/comparison_genomes/Methanococcus_maripaludis.gbk:2730: formate ==> format
data/cct-1.0.0/sample_projects/sample_project_2/comparison_genomes/Methanococcus_maripaludis.gbk:2985: probabilty ==> probability
data/cct-1.0.0/sample_projects/sample_project_2/comparison_genomes/Methanococcus_maripaludis.gbk:3534: probabilty ==> probability
data/cct-1.0.0/sample_projects/sample_project_2/comparison_genomes/Methanococcus_maripaludis.gbk:3746: probabilty ==> probability
data/cct-1.0.0/sample_projects/sample_project_2/comparison_genomes/Methanococcus_maripaludis.gbk:3782: probabilty ==> probability
data/cct-1.0.0/sample_projects/sample_project_2/comparison_genomes/Methanococcus_maripaludis.gbk:3822: probabilty ==> probability
data/cct-1.0.0/sample_projects/sample_project_2/comparison_genomes/Methanococcus_maripaludis.gbk:3844: probabilty ==> probability
data/cct-1.0.0/sample_projects/sample_project_2/comparison_genomes/Methanococcus_maripaludis.gbk:3997: probabilty ==> probability
data/cct-1.0.0/sample_projects/sample_project_2/comparison_genomes/Methanococcus_maripaludis.gbk:4010: chanel ==> channel
data/cct-1.0.0/sample_projects/sample_project_2/comparison_genomes/Methanococcus_maripaludis.gbk:4109: probabilty ==> probability
data/cct-1.0.0/sample_projects/sample_project_2/comparison_genomes/Methanococcus_maripaludis.gbk:4262: probabilty ==> probability
data/cct-1.0.0/sample_projects/sample_project_2/comparison_genomes/Methanococcus_maripaludis.gbk:4565: probabilty ==> probability
data/cct-1.0.0/sample_projects/sample_project_2/comparison_genomes/Methanococcus_maripaludis.gbk:4611: probabilty ==> probability
data/cct-1.0.0/sample_projects/sample_project_2/comparison_genomes/Methanococcus_maripaludis.gbk:4629: probabilty ==> probability
data/cct-1.0.0/sample_projects/sample_project_2/comparison_genomes/Methanococcus_maripaludis.gbk:4651: probabilty ==> probability
data/cct-1.0.0/sample_projects/sample_project_2/comparison_genomes/Methanococcus_maripaludis.gbk:4674: probabilty ==> probability
data/cct-1.0.0/sample_projects/sample_project_2/comparison_genomes/Methanococcus_maripaludis.gbk:4699: probabilty ==> probability
data/cct-1.0.0/sample_projects/sample_project_2/comparison_genomes/Methanococcus_maripaludis.gbk:4747: probabilty ==> probability
data/cct-1.0.0/sample_projects/sample_project_2/comparison_genomes/Methanococcus_maripaludis.gbk:5354: probabilty ==> probability
data/cct-1.0.0/sample_projects/sample_project_2/comparison_genomes/Methanococcus_maripaludis.gbk:5488: Suh ==> Such
data/cct-1.0.0/sample_projects/sample_project_2/comparison_genomes/Methanococcus_maripaludis.gbk:5987: probabilty ==> probability
data/cct-1.0.0/sample_projects/sample_project_2/comparison_genomes/Methanococcus_maripaludis.gbk:6131: probabilty ==> probability
data/cct-1.0.0/sample_projects/sample_project_2/comparison_genomes/Methanococcus_maripaludis.gbk:6418: Holliday ==> Holiday
data/cct-1.0.0/sample_projects/sample_project_2/comparison_genomes/Methanococcus_maripaludis.gbk:6598: probabilty ==> probability
data/cct-1.0.0/sample_projects/sample_project_2/comparison_genomes/Methanococcus_maripaludis.gbk:6618: probabilty ==> probability
data/cct-1.0.0/sample_projects/sample_project_2/comparison_genomes/Methanococcus_maripaludis.gbk:6977: probabilty ==> probability
data/cct-1.0.0/sample_projects/sample_project_2/comparison_genomes/Methanococcus_maripaludis.gbk:7007: probabilty ==> probability
data/cct-1.0.0/sample_projects/sample_project_2/comparison_genomes/Methanococcus_maripaludis.gbk:7047: probabilty ==> probability
data/cct-1.0.0/sample_projects/sample_project_2/comparison_genomes/Methanococcus_maripaludis.gbk:7090: probabilty ==> probability
data/cct-1.0.0/sample_projects/sample_project_2/comparison_genomes/Methanococcus_maripaludis.gbk:7114: probabilty ==> probability
data/cct-1.0.0/sample_projects/sample_project_2/comparison_genomes/Methanococcus_maripaludis.gbk:7363: probabilty ==> probability
data/cct-1.0.0/sample_projects/sample_project_2/comparison_genomes/Methanococcus_maripaludis.gbk:7687: probabilty ==> probability
data/cct-1.0.0/sample_projects/sample_project_2/comparison_genomes/Methanococcus_maripaludis.gbk:7756: probabilty ==> probability
data/cct-1.0.0/sample_projects/sample_project_2/comparison_genomes/Methanococcus_maripaludis.gbk:7791: FO ==> OF, FOR
data/cct-1.0.0/sample_projects/sample_project_2/comparison_genomes/Methanococcus_maripaludis.gbk:7965: probabilty ==> probability
data/cct-1.0.0/sample_projects/sample_project_2/comparison_genomes/Methanococcus_maripaludis.gbk:8034: probabilty ==> probability
data/cct-1.0.0/sample_projects/sample_project_2/comparison_genomes/Methanococcus_maripaludis.gbk:8416: BA ==> BY, BE
data/cct-1.0.0/sample_projects/sample_project_2/comparison_genomes/Methanococcus_maripaludis.gbk:8666: probabilty ==> probability
data/cct-1.0.0/sample_projects/sample_project_2/comparison_genomes/Methanococcus_maripaludis.gbk:9186: probabilty ==> probability
data/cct-1.0.0/sample_projects/sample_project_2/comparison_genomes/Methanococcus_maripaludis.gbk:9235: probabilty ==> probability
data/cct-1.0.0/sample_projects/sample_project_2/comparison_genomes/Methanococcus_maripaludis.gbk:9376: probabilty ==> probability
data/cct-1.0.0/sample_projects/sample_project_2/comparison_genomes/Methanococcus_maripaludis.gbk:9531: probabilty ==> probability
data/cct-1.0.0/sample_projects/sample_project_2/comparison_genomes/Methanococcus_maripaludis.gbk:9557: probabilty ==> probability
data/cct-1.0.0/sample_projects/sample_project_2/comparison_genomes/Methanococcus_maripaludis.gbk:9632: probabilty ==> probability
data/cct-1.0.0/sample_projects/sample_project_2/comparison_genomes/Methanococcus_maripaludis.gbk:9669: probabilty ==> probability
data/cct-1.0.0/sample_projects/sample_project_2/comparison_genomes/Methanococcus_maripaludis.gbk:9699: reversable ==> reversible
data/cct-1.0.0/sample_projects/sample_project_2/comparison_genomes/Methanococcus_maripaludis.gbk:9780: reversable ==> reversible
data/cct-1.0.0/sample_projects/sample_project_2/comparison_genomes/Methanococcus_maripaludis.gbk:9846: probabilty ==> probability
data/cct-1.0.0/sample_projects/sample_project_2/comparison_genomes/Methanococcus_maripaludis.gbk:9873: probabilty ==> probability
data/cct-1.0.0/sample_projects/sample_project_2/comparison_genomes/Methanococcus_maripaludis.gbk:9941: probabilty ==> probability
data/cct-1.0.0/sample_projects/sample_project_2/comparison_genomes/Methanococcus_maripaludis.gbk:10005: probabilty ==> probability
data/cct-1.0.0/sample_projects/sample_project_2/comparison_genomes/Methanococcus_maripaludis.gbk:10034: probabilty ==> probability
data/cct-1.0.0/sample_projects/sample_project_2/comparison_genomes/Methanococcus_maripaludis.gbk:10075: probabilty ==> probability
data/cct-1.0.0/sample_projects/sample_project_2/comparison_genomes/Methanococcus_maripaludis.gbk:10097: probabilty ==> probability
data/cct-1.0.0/sample_projects/sample_project_2/comparison_genomes/Methanococcus_maripaludis.gbk:10151: probabilty ==> probability
data/cct-1.0.0/sample_projects/sample_project_2/comparison_genomes/Methanococcus_maripaludis.gbk:10180: probabilty ==> probability
data/cct-1.0.0/sample_projects/sample_project_2/comparison_genomes/Methanococcus_maripaludis.gbk:10567: probabilty ==> probability
data/cct-1.0.0/sample_projects/sample_project_2/comparison_genomes/Methanococcus_maripaludis.gbk:10905: probabilty ==> probability
data/cct-1.0.0/sample_projects/sample_project_2/comparison_genomes/Methanococcus_maripaludis.gbk:11306: probabilty ==> probability
data/cct-1.0.0/sample_projects/sample_project_2/comparison_genomes/Methanococcus_maripaludis.gbk:11476: probabilty ==> probability
data/cct-1.0.0/sample_projects/sample_project_2/comparison_genomes/Methanococcus_maripaludis.gbk:11501: probabilty ==> probability
data/cct-1.0.0/sample_projects/sample_project_2/comparison_genomes/Methanococcus_maripaludis.gbk:11728: probabilty ==> probability
data/cct-1.0.0/sample_projects/sample_project_2/comparison_genomes/Methanococcus_maripaludis.gbk:12114: probabilty ==> probability
data/cct-1.0.0/sample_projects/sample_project_2/comparison_genomes/Methanococcus_maripaludis.gbk:12165: probabilty ==> probability
data/cct-1.0.0/sample_projects/sample_project_2/comparison_genomes/Methanococcus_maripaludis.gbk:12721: probabilty ==> probability
data/cct-1.0.0/sample_projects/sample_project_2/comparison_genomes/Methanococcus_maripaludis.gbk:12766: probabilty ==> probability
data/cct-1.0.0/sample_projects/sample_project_2/comparison_genomes/Methanococcus_maripaludis.gbk:12789: probabilty ==> probability
data/cct-1.0.0/sample_projects/sample_project_2/comparison_genomes/Methanococcus_maripaludis.gbk:12819: probabilty ==> probability
data/cct-1.0.0/sample_projects/sample_project_2/comparison_genomes/Methanococcus_maripaludis.gbk:13139: probabilty ==> probability
data/cct-1.0.0/sample_projects/sample_project_2/comparison_genomes/Methanococcus_maripaludis.gbk:13160: probabilty ==> probability
data/cct-1.0.0/sample_projects/sample_project_2/comparison_genomes/Methanococcus_maripaludis.gbk:13185: probabilty ==> probability
data/cct-1.0.0/sample_projects/sample_project_2/comparison_genomes/Methanococcus_maripaludis.gbk:13510: probabilty ==> probability
data/cct-1.0.0/sample_projects/sample_project_2/comparison_genomes/Methanococcus_maripaludis.gbk:13592: probabilty ==> probability
data/cct-1.0.0/sample_projects/sample_project_2/comparison_genomes/Methanococcus_maripaludis.gbk:13762: probabilty ==> probability
data/cct-1.0.0/sample_projects/sample_project_2/comparison_genomes/Methanococcus_maripaludis.gbk:14055: probabilty ==> probability
data/cct-1.0.0/sample_projects/sample_project_2/comparison_genomes/Methanococcus_maripaludis.gbk:14441: probabilty ==> probability
data/cct-1.0.0/sample_projects/sample_project_2/comparison_genomes/Methanococcus_maripaludis.gbk:14547: probabilty ==> probability
data/cct-1.0.0/sample_projects/sample_project_2/comparison_genomes/Methanococcus_maripaludis.gbk:14598: probabilty ==> probability
data/cct-1.0.0/sample_projects/sample_project_2/comparison_genomes/Methanococcus_maripaludis.gbk:14665: probabilty ==> probability
data/cct-1.0.0/sample_projects/sample_project_2/comparison_genomes/Methanococcus_maripaludis.gbk:14687: probabilty ==> probability
data/cct-1.0.0/sample_projects/sample_project_2/comparison_genomes/Methanococcus_maripaludis.gbk:14726: probabilty ==> probability
data/cct-1.0.0/sample_projects/sample_project_2/comparison_genomes/Methanococcus_maripaludis.gbk:14795: probabilty ==> probability
data/cct-1.0.0/sample_projects/sample_project_2/comparison_genomes/Methanococcus_maripaludis.gbk:14827: probabilty ==> probability
data/cct-1.0.0/sample_projects/sample_project_2/comparison_genomes/Methanococcus_maripaludis.gbk:14959: probabilty ==> probability
data/cct-1.0.0/sample_projects/sample_project_2/comparison_genomes/Methanococcus_maripaludis.gbk:15010: probabilty ==> probability
data/cct-1.0.0/sample_projects/sample_project_2/comparison_genomes/Methanococcus_maripaludis.gbk:15098: probabilty ==> probability
data/cct-1.0.0/sample_projects/sample_project_2/comparison_genomes/Methanococcus_maripaludis.gbk:15150: probabilty ==> probability
data/cct-1.0.0/sample_projects/sample_project_2/comparison_genomes/Methanococcus_maripaludis.gbk:15177: probabilty ==> probability
data/cct-1.0.0/sample_projects/sample_project_2/comparison_genomes/Methanococcus_maripaludis.gbk:15213: probabilty ==> probability
data/cct-1.0.0/sample_projects/sample_project_2/comparison_genomes/Methanococcus_maripaludis.gbk:15293: probabilty ==> probability
data/cct-1.0.0/sample_projects/sample_project_2/comparison_genomes/Methanococcus_maripaludis.gbk:15434: probabilty ==> probability
data/cct-1.0.0/sample_projects/sample_project_2/comparison_genomes/Methanococcus_maripaludis.gbk:15460: probabilty ==> probability
data/cct-1.0.0/sample_projects/sample_project_2/comparison_genomes/Methanococcus_maripaludis.gbk:15487: probabilty ==> probability
data/cct-1.0.0/sample_projects/sample_project_2/comparison_genomes/Methanococcus_maripaludis.gbk:15916: probabilty ==> probability
data/cct-1.0.0/sample_projects/sample_project_2/comparison_genomes/Methanococcus_maripaludis.gbk:16129: probabilty ==> probability
data/cct-1.0.0/sample_projects/sample_project_2/comparison_genomes/Methanococcus_maripaludis.gbk:16536: probabilty ==> probability
data/cct-1.0.0/sample_projects/sample_project_2/comparison_genomes/Methanococcus_maripaludis.gbk:16723: probabilty ==> probability
data/cct-1.0.0/sample_projects/sample_project_2/comparison_genomes/Methanococcus_maripaludis.gbk:16742: FO ==> OF, FOR
data/cct-1.0.0/sample_projects/sample_project_2/comparison_genomes/Methanococcus_maripaludis.gbk:16958: probabilty ==> probability
data/cct-1.0.0/sample_projects/sample_project_2/comparison_genomes/Methanococcus_maripaludis.gbk:17180: probabilty ==> probability
data/cct-1.0.0/sample_projects/sample_project_2/comparison_genomes/Methanococcus_maripaludis.gbk:17257: probabilty ==> probability
data/cct-1.0.0/sample_projects/sample_project_2/comparison_genomes/Methanococcus_maripaludis.gbk:17723: probabilty ==> probability
data/cct-1.0.0/sample_projects/sample_project_2/comparison_genomes/Methanococcus_maripaludis.gbk:17961: probabilty ==> probability
data/cct-1.0.0/sample_projects/sample_project_2/comparison_genomes/Methanococcus_maripaludis.gbk:18007: probabilty ==> probability
data/cct-1.0.0/sample_projects/sample_project_2/comparison_genomes/Methanococcus_maripaludis.gbk:18276: probabilty ==> probability
data/cct-1.0.0/sample_projects/sample_project_2/comparison_genomes/Methanococcus_maripaludis.gbk:18302: probabilty ==> probability
data/cct-1.0.0/sample_projects/sample_project_2/comparison_genomes/Methanococcus_maripaludis.gbk:18393: probabilty ==> probability
data/cct-1.0.0/sample_projects/sample_project_2/comparison_genomes/Methanococcus_maripaludis.gbk:18504: probabilty ==> probability
data/cct-1.0.0/sample_projects/sample_project_2/comparison_genomes/Methanococcus_maripaludis.gbk:18578: probabilty ==> probability
data/cct-1.0.0/sample_projects/sample_project_2/comparison_genomes/Methanococcus_maripaludis.gbk:18652: probabilty ==> probability
data/cct-1.0.0/sample_projects/sample_project_2/comparison_genomes/Methanococcus_maripaludis.gbk:18681: nickle ==> nickel
data/cct-1.0.0/sample_projects/sample_project_2/comparison_genomes/Methanococcus_maripaludis.gbk:19101: probabilty ==> probability
data/cct-1.0.0/sample_projects/sample_project_2/comparison_genomes/Methanococcus_maripaludis.gbk:19124: probabilty ==> probability
data/cct-1.0.0/sample_projects/sample_project_2/comparison_genomes/Methanococcus_maripaludis.gbk:19549: probabilty ==> probability
data/cct-1.0.0/sample_projects/sample_project_2/comparison_genomes/Methanococcus_maripaludis.gbk:19575: probabilty ==> probability
data/cct-1.0.0/sample_projects/sample_project_2/comparison_genomes/Methanococcus_maripaludis.gbk:19607: probabilty ==> probability
data/cct-1.0.0/sample_projects/sample_project_2/comparison_genomes/Methanococcus_maripaludis.gbk:20003: probabilty ==> probability
data/cct-1.0.0/sample_projects/sample_project_2/comparison_genomes/Methanococcus_maripaludis.gbk:20416: probabilty ==> probability
data/cct-1.0.0/sample_projects/sample_project_2/comparison_genomes/Methanococcus_maripaludis.gbk:20533: probabilty ==> probability
data/cct-1.0.0/sample_projects/sample_project_2/comparison_genomes/Methanococcus_maripaludis.gbk:20565: probabilty ==> probability
data/cct-1.0.0/sample_projects/sample_project_2/comparison_genomes/Methanococcus_maripaludis.gbk:20932: probabilty ==> probability
data/cct-1.0.0/sample_projects/sample_project_2/comparison_genomes/Methanococcus_maripaludis.gbk:21071: probabilty ==> probability
data/cct-1.0.0/sample_projects/sample_project_2/comparison_genomes/Methanococcus_maripaludis.gbk:21097: probabilty ==> probability
data/cct-1.0.0/sample_projects/sample_project_2/comparison_genomes/Methanococcus_maripaludis.gbk:21393: probabilty ==> probability
data/cct-1.0.0/sample_projects/sample_project_2/comparison_genomes/Methanococcus_maripaludis.gbk:21422: probabilty ==> probability
data/cct-1.0.0/sample_projects/sample_project_2/comparison_genomes/Methanococcus_maripaludis.gbk:21546: probabilty ==> probability
data/cct-1.0.0/sample_projects/sample_project_2/comparison_genomes/Methanococcus_maripaludis.gbk:21581: probabilty ==> probability
data/cct-1.0.0/sample_projects/sample_project_2/comparison_genomes/Methanococcus_maripaludis.gbk:21740: probabilty ==> probability
data/cct-1.0.0/sample_projects/sample_project_2/comparison_genomes/Methanococcus_maripaludis.gbk:21920: thiE ==> the, this
data/cct-1.0.0/sample_projects/sample_project_2/comparison_genomes/Methanococcus_maripaludis.gbk:21923: thiE ==> the, this
data/cct-1.0.0/sample_projects/sample_project_2/comparison_genomes/Methanococcus_maripaludis.gbk:22010: probabilty ==> probability
data/cct-1.0.0/sample_projects/sample_project_2/comparison_genomes/Methanococcus_maripaludis.gbk:22536: probabilty ==> probability
data/cct-1.0.0/sample_projects/sample_project_2/comparison_genomes/Methanococcus_maripaludis.gbk:22597: probabilty ==> probability
data/cct-1.0.0/sample_projects/sample_project_2/comparison_genomes/Methanococcus_maripaludis.gbk:22634: probabilty ==> probability
data/cct-1.0.0/sample_projects/sample_project_2/comparison_genomes/Methanococcus_maripaludis.gbk:22693: probabilty ==> probability
data/cct-1.0.0/sample_projects/sample_project_2/comparison_genomes/Methanococcus_maripaludis.gbk:22716: probabilty ==> probability
data/cct-1.0.0/sample_projects/sample_project_2/comparison_genomes/Methanococcus_maripaludis.gbk:22939: probabilty ==> probability
data/cct-1.0.0/sample_projects/sample_project_2/comparison_genomes/Methanococcus_maripaludis.gbk:22968: probabilty ==> probability
data/cct-1.0.0/sample_projects/sample_project_2/comparison_genomes/Methanococcus_maripaludis.gbk:23006: probabilty ==> probability
data/cct-1.0.0/sample_projects/sample_project_2/comparison_genomes/Methanococcus_maripaludis.gbk:23026: probabilty ==> probability
data/cct-1.0.0/sample_projects/sample_project_2/comparison_genomes/Methanococcus_maripaludis.gbk:23111: probabilty ==> probability
data/cct-1.0.0/sample_projects/sample_project_2/comparison_genomes/Methanococcus_maripaludis.gbk:23543: probabilty ==> probability
data/cct-1.0.0/sample_projects/sample_project_2/comparison_genomes/Methanococcus_maripaludis.gbk:23563: probabilty ==> probability
data/cct-1.0.0/sample_projects/sample_project_2/comparison_genomes/Methanococcus_maripaludis.gbk:23622: probabilty ==> probability
data/cct-1.0.0/sample_projects/sample_project_2/comparison_genomes/Methanococcus_maripaludis.gbk:23693: Formate ==> Format
data/cct-1.0.0/sample_projects/sample_project_2/comparison_genomes/Methanococcus_maripaludis.gbk:23762: probabilty ==> probability
data/cct-1.0.0/sample_projects/sample_project_2/comparison_genomes/Methanococcus_maripaludis.gbk:23835: probabilty ==> probability
data/cct-1.0.0/sample_projects/sample_project_2/comparison_genomes/Methanococcus_maripaludis.gbk:24199: probabilty ==> probability
data/cct-1.0.0/sample_projects/sample_project_2/comparison_genomes/Methanococcus_maripaludis.gbk:24486: probabilty ==> probability
data/cct-1.0.0/sample_projects/sample_project_2/comparison_genomes/Methanococcus_maripaludis.gbk:24619: probabilty ==> probability
data/cct-1.0.0/sample_projects/sample_project_2/comparison_genomes/Methanococcus_maripaludis.gbk:24668: probabilty ==> probability
data/cct-1.0.0/sample_projects/sample_project_2/comparison_genomes/Methanococcus_maripaludis.gbk:24898: formate ==> format
data/cct-1.0.0/sample_projects/sample_project_2/comparison_genomes/Methanococcus_maripaludis.gbk:24922: formate ==> format
data/cct-1.0.0/sample_projects/sample_project_2/comparison_genomes/Methanococcus_maripaludis.gbk:24968: probabilty ==> probability
data/cct-1.0.0/sample_projects/sample_project_2/comparison_genomes/Methanococcus_maripaludis.gbk:24984: Formate ==> Format
data/cct-1.0.0/sample_projects/sample_project_2/comparison_genomes/Methanococcus_maripaludis.gbk:25037: probabilty ==> probability
data/cct-1.0.0/sample_projects/sample_project_2/comparison_genomes/Methanococcus_maripaludis.gbk:25187: probabilty ==> probability
data/cct-1.0.0/sample_projects/sample_project_2/comparison_genomes/Methanococcus_maripaludis.gbk:26369: probabilty ==> probability
data/cct-1.0.0/sample_projects/sample_project_2/comparison_genomes/Methanococcus_maripaludis.gbk:26394: UE ==> USE, DUE
data/cct-1.0.0/sample_projects/sample_project_2/comparison_genomes/Methanococcus_maripaludis.gbk:26519: probabilty ==> probability
data/cct-1.0.0/sample_projects/sample_project_2/comparison_genomes/Methanococcus_maripaludis.gbk:26615: probabilty ==> probability
data/cct-1.0.0/sample_projects/sample_project_2/comparison_genomes/Methanococcus_maripaludis.gbk:27234: probabilty ==> probability
data/cct-1.0.0/sample_projects/sample_project_2/comparison_genomes/Methanococcus_maripaludis.gbk:27388: Cann ==> Can
data/cct-1.0.0/sample_projects/sample_project_2/comparison_genomes/Methanococcus_maripaludis.gbk:27514: probabilty ==> probability
data/cct-1.0.0/sample_projects/sample_project_2/comparison_genomes/Methanococcus_maripaludis.gbk:27688: probabilty ==> probability
data/cct-1.0.0/sample_projects/sample_project_2/comparison_genomes/Methanococcus_maripaludis.gbk:28243: probabilty ==> probability
data/cct-1.0.0/sample_projects/sample_project_2/comparison_genomes/Methanococcus_maripaludis.gbk:28588: probabilty ==> probability
data/cct-1.0.0/sample_projects/sample_project_2/comparison_genomes/Methanococcus_maripaludis.gbk:29083: probabilty ==> probability
data/cct-1.0.0/sample_projects/sample_project_2/comparison_genomes/Methanococcus_maripaludis.gbk:29166: probabilty ==> probability
data/cct-1.0.0/sample_projects/sample_project_2/comparison_genomes/Methanococcus_maripaludis.gbk:29197: probabilty ==> probability
data/cct-1.0.0/sample_projects/sample_project_2/comparison_genomes/Methanococcus_maripaludis.gbk:29864: probabilty ==> probability
data/cct-1.0.0/sample_projects/sample_project_2/comparison_genomes/Methanococcus_maripaludis.gbk:30384: probabilty ==> probability
data/cct-1.0.0/sample_projects/sample_project_2/comparison_genomes/Methanococcus_maripaludis.gbk:31103: probabilty ==> probability
data/cct-1.0.0/sample_projects/sample_project_2/comparison_genomes/Methanococcus_maripaludis.gbk:31260: probabilty ==> probability
data/cct-1.0.0/sample_projects/sample_project_2/comparison_genomes/Methanococcus_maripaludis.gbk:31278: probabilty ==> probability
data/cct-1.0.0/sample_projects/sample_project_2/comparison_genomes/Methanococcus_maripaludis.gbk:31338: probabilty ==> probability
data/cct-1.0.0/sample_projects/sample_project_2/comparison_genomes/Methanococcus_maripaludis.gbk:31549: probabilty ==> probability
data/cct-1.0.0/sample_projects/sample_project_2/comparison_genomes/Methanococcus_maripaludis.gbk:31590: probabilty ==> probability
data/cct-1.0.0/sample_projects/sample_project_2/comparison_genomes/Methanococcus_maripaludis.gbk:31620: probabilty ==> probability
data/cct-1.0.0/sample_projects/sample_project_2/comparison_genomes/Methanococcus_maripaludis.gbk:31979: probabilty ==> probability
data/cct-1.0.0/sample_projects/sample_project_2/comparison_genomes/Methanococcus_maripaludis.gbk:32007: probabilty ==> probability
data/cct-1.0.0/sample_projects/sample_project_2/comparison_genomes/Methanococcus_maripaludis.gbk:32102: probabilty ==> probability
data/cct-1.0.0/sample_projects/sample_project_2/comparison_genomes/Methanococcus_maripaludis.gbk:32355: probabilty ==> probability
data/cct-1.0.0/sample_projects/sample_project_2/comparison_genomes/Methanococcus_maripaludis.gbk:32647: probabilty ==> probability
data/cct-1.0.0/sample_projects/sample_project_2/comparison_genomes/Methanococcus_maripaludis.gbk:32719: ND ==> AND, 2ND
data/cct-1.0.0/sample_projects/sample_project_2/comparison_genomes/Methanococcus_maripaludis.gbk:33008: probabilty ==> probability
data/cct-1.0.0/sample_projects/sample_project_2/comparison_genomes/Methanococcus_maripaludis.gbk:33034: probabilty ==> probability
data/cct-1.0.0/sample_projects/sample_project_2/comparison_genomes/Methanosarcina_acetivorans.gbk:15: Cann ==> Can
data/cct-1.0.0/sample_projects/sample_project_2/comparison_genomes/Methanosarcina_acetivorans.gbk:251: CheC ==> check
data/cct-1.0.0/sample_projects/sample_project_2/comparison_genomes/Methanosarcina_acetivorans.gbk:3920: formate ==> format
data/cct-1.0.0/sample_projects/sample_project_2/comparison_genomes/Methanosarcina_acetivorans.gbk:22551: VISE ==> VICE
data/cct-1.0.0/sample_projects/sample_project_2/comparison_genomes/Methanosarcina_acetivorans.gbk:41693: formate ==> format
data/cct-1.0.0/sample_projects/sample_project_2/comparison_genomes/Methanosarcina_acetivorans.gbk:47107: thiE ==> the, this
data/cct-1.0.0/sample_projects/sample_project_2/comparison_genomes/Methanosarcina_acetivorans.gbk:47111: thiE ==> the, this
data/cct-1.0.0/sample_projects/sample_project_2/comparison_genomes/Methanosarcina_acetivorans.gbk:52890: CheC ==> check
data/cct-1.0.0/sample_projects/sample_project_2/comparison_genomes/Methanosarcina_acetivorans.gbk:55166: thiD ==> this
data/cct-1.0.0/sample_projects/sample_project_2/comparison_genomes/Methanosarcina_acetivorans.gbk:55170: thiD ==> this
data/cct-1.0.0/sample_projects/sample_project_2/comparison_genomes/Thermococcus_kodakaraensis.gbk:3605: formate ==> format
data/cct-1.0.0/sample_projects/sample_project_2/comparison_genomes/Thermococcus_kodakaraensis.gbk:5387: TE ==> THE, BE, WE
data/cct-1.0.0/sample_projects/sample_project_2/comparison_genomes/Thermococcus_kodakaraensis.gbk:10599: cheC ==> check
data/cct-1.0.0/sample_projects/sample_project_2/comparison_genomes/Thermococcus_kodakaraensis.gbk:10614: cheC ==> check
data/cct-1.0.0/sample_projects/sample_project_2/comparison_genomes/Thermococcus_kodakaraensis.gbk:14549: LKE ==> LIKE
data/cct-1.0.0/sample_projects/sample_project_2/comparison_genomes/Thermococcus_kodakaraensis.gbk:19680: Holliday ==> Holiday
data/cct-1.0.0/sample_projects/sample_project_2/comparison_genomes/Thermococcus_kodakaraensis.gbk:35050: formate ==> format
data/cct-1.0.0/sample_projects/sample_project_2/comparison_genomes/Thermococcus_kodakaraensis.gbk:35104: formate ==> format
data/cct-1.0.0/sample_projects/sample_project_2/comparison_genomes/Thermococcus_kodakaraensis.gbk:37635: KAKE ==> CAKE, TAKE
data/cct-1.0.0/sample_projects/sample_project_2/reference_genome/Methanobacterium_thermoautotrophicum.gbk:7074: formate ==> format
data/cct-1.0.0/sample_projects/sample_project_2/reference_genome/Methanobacterium_thermoautotrophicum.gbk:8172: formate ==> format
data/cct-1.0.0/sample_projects/sample_project_2/reference_genome/Methanobacterium_thermoautotrophicum.gbk:8191: formate ==> format
data/cct-1.0.0/sample_projects/sample_project_2/reference_genome/Methanobacterium_thermoautotrophicum.gbk:22329: formate ==> format
data/cct-1.0.0/sample_projects/sample_project_2/reference_genome/Methanobacterium_thermoautotrophicum.gbk:22778: EGE ==> EDGE
data/cct-1.0.0/sample_projects/sample_project_2/reference_genome/Methanobacterium_thermoautotrophicum.gbk:23826: formate ==> format
data/cct-1.0.0/sample_projects/sample_project_2/reference_genome/Methanobacterium_thermoautotrophicum.gbk:23850: formate ==> format
data/cct-1.0.0/sample_projects/sample_project_2/reference_genome/Methanobacterium_thermoautotrophicum.gbk:25919: formate ==> format
data/cct-1.0.0/sample_projects/sample_project_2/reference_genome/Methanobacterium_thermoautotrophicum.gbk:25943: formate ==> format
data/cct-1.0.0/sample_projects/sample_project_2/reference_genome/Methanobacterium_thermoautotrophicum.gbk:32420: formate ==> format
data/cct-1.0.0/sample_projects/sample_project_2/reference_genome/Methanobacterium_thermoautotrophicum.gbk:35939: formate ==> format
data/cct-1.0.0/sample_projects/sample_project_2/reference_genome/Methanobacterium_thermoautotrophicum.gbk:36377: formate ==> format
data/cct-1.0.0/sample_projects/sample_project_2/reference_genome/Methanobacterium_thermoautotrophicum.gbk:36396: formate ==> format
data/cct-1.0.0/sample_projects/sample_project_3/comparison_genomes/NC_000913.gbk:403: groP ==> group, drop
data/cct-1.0.0/sample_projects/sample_project_3/comparison_genomes/NC_000913.gbk:438: groP ==> group, drop
data/cct-1.0.0/sample_projects/sample_project_3/comparison_genomes/NC_000913.gbk:4394: ptd ==> pdf
data/cct-1.0.0/sample_projects/sample_project_3/comparison_genomes/NC_000913.gbk:5117: yaeR ==> year
data/cct-1.0.0/sample_projects/sample_project_3/comparison_genomes/NC_000913.gbk:5122: yaeR ==> year
data/cct-1.0.0/sample_projects/sample_project_3/comparison_genomes/NC_000913.gbk:10046: familiy ==> family
data/cct-1.0.0/sample_projects/sample_project_3/comparison_genomes/NC_000913.gbk:10399: auxillary ==> auxiliary
data/cct-1.0.0/sample_projects/sample_project_3/comparison_genomes/NC_000913.gbk:10426: auxillary ==> auxiliary
data/cct-1.0.0/sample_projects/sample_project_3/comparison_genomes/NC_000913.gbk:10456: auxillary ==> auxiliary
data/cct-1.0.0/sample_projects/sample_project_3/comparison_genomes/NC_000913.gbk:11444: familiy ==> family
data/cct-1.0.0/sample_projects/sample_project_3/comparison_genomes/NC_000913.gbk:13863: auxillary ==> auxiliary
data/cct-1.0.0/sample_projects/sample_project_3/comparison_genomes/NC_000913.gbk:13935: familiy ==> family
data/cct-1.0.0/sample_projects/sample_project_3/comparison_genomes/NC_000913.gbk:14015: Holliday ==> Holiday
data/cct-1.0.0/sample_projects/sample_project_3/comparison_genomes/NC_000913.gbk:14023: Holliday ==> Holiday
data/cct-1.0.0/sample_projects/sample_project_3/comparison_genomes/NC_000913.gbk:14325: appY ==> apply
data/cct-1.0.0/sample_projects/sample_project_3/comparison_genomes/NC_000913.gbk:14330: appY ==> apply
data/cct-1.0.0/sample_projects/sample_project_3/comparison_genomes/NC_000913.gbk:14395: familiy ==> family
data/cct-1.0.0/sample_projects/sample_project_3/comparison_genomes/NC_000913.gbk:15150: tranport ==> transport
data/cct-1.0.0/sample_projects/sample_project_3/comparison_genomes/NC_000913.gbk:15448: familiy ==> family
data/cct-1.0.0/sample_projects/sample_project_3/comparison_genomes/NC_000913.gbk:17638: wtih ==> with
data/cct-1.0.0/sample_projects/sample_project_3/comparison_genomes/NC_000913.gbk:18942: GUD ==> GOOD
data/cct-1.0.0/sample_projects/sample_project_3/comparison_genomes/NC_000913.gbk:18976: GUD ==> GOOD
data/cct-1.0.0/sample_projects/sample_project_3/comparison_genomes/NC_000913.gbk:19231: dessication ==> desiccation
data/cct-1.0.0/sample_projects/sample_project_3/comparison_genomes/NC_000913.gbk:19265: dessication ==> desiccation
data/cct-1.0.0/sample_projects/sample_project_3/comparison_genomes/NC_000913.gbk:19301: dessication ==> desiccation
data/cct-1.0.0/sample_projects/sample_project_3/comparison_genomes/NC_000913.gbk:20917: formate ==> format
data/cct-1.0.0/sample_projects/sample_project_3/comparison_genomes/NC_000913.gbk:20921: formate ==> format
data/cct-1.0.0/sample_projects/sample_project_3/comparison_genomes/NC_000913.gbk:20957: formate ==> format
data/cct-1.0.0/sample_projects/sample_project_3/comparison_genomes/NC_000913.gbk:22473: Ser ==> Set
data/cct-1.0.0/sample_projects/sample_project_3/comparison_genomes/NC_000913.gbk:23007: formate ==> format
data/cct-1.0.0/sample_projects/sample_project_3/comparison_genomes/NC_000913.gbk:23028: formate ==> format
data/cct-1.0.0/sample_projects/sample_project_3/comparison_genomes/NC_000913.gbk:23034: formate ==> format
data/cct-1.0.0/sample_projects/sample_project_3/comparison_genomes/NC_000913.gbk:23063: formate ==> format
data/cct-1.0.0/sample_projects/sample_project_3/comparison_genomes/NC_000913.gbk:23063: formate ==> format
data/cct-1.0.0/sample_projects/sample_project_3/comparison_genomes/NC_000913.gbk:23068: formate ==> format
data/cct-1.0.0/sample_projects/sample_project_3/comparison_genomes/NC_000913.gbk:23068: formate ==> format
data/cct-1.0.0/sample_projects/sample_project_3/comparison_genomes/NC_000913.gbk:24784: Ser ==> Set
data/cct-1.0.0/sample_projects/sample_project_3/comparison_genomes/NC_000913.gbk:26290: Ser ==> Set
data/cct-1.0.0/sample_projects/sample_project_3/comparison_genomes/NC_000913.gbk:26674: ANE ==> AND
data/cct-1.0.0/sample_projects/sample_project_3/comparison_genomes/NC_000913.gbk:30250: asociated ==> associated
data/cct-1.0.0/sample_projects/sample_project_3/comparison_genomes/NC_000913.gbk:30283: tre ==> tree
data/cct-1.0.0/sample_projects/sample_project_3/comparison_genomes/NC_000913.gbk:30998: familiy ==> family
data/cct-1.0.0/sample_projects/sample_project_3/comparison_genomes/NC_000913.gbk:31420: dessication ==> desiccation
data/cct-1.0.0/sample_projects/sample_project_3/comparison_genomes/NC_000913.gbk:32410: familiy ==> family
data/cct-1.0.0/sample_projects/sample_project_3/comparison_genomes/NC_000913.gbk:32435: acn ==> can, acne
data/cct-1.0.0/sample_projects/sample_project_3/comparison_genomes/NC_000913.gbk:34073: familiy ==> family
data/cct-1.0.0/sample_projects/sample_project_3/comparison_genomes/NC_000913.gbk:36110: familiy ==> family
data/cct-1.0.0/sample_projects/sample_project_3/comparison_genomes/NC_000913.gbk:36773: familiy ==> family
data/cct-1.0.0/sample_projects/sample_project_3/comparison_genomes/NC_000913.gbk:37375: formate ==> format
data/cct-1.0.0/sample_projects/sample_project_3/comparison_genomes/NC_000913.gbk:37383: formate ==> format
data/cct-1.0.0/sample_projects/sample_project_3/comparison_genomes/NC_000913.gbk:37418: formate ==> format
data/cct-1.0.0/sample_projects/sample_project_3/comparison_genomes/NC_000913.gbk:37425: formate ==> format
data/cct-1.0.0/sample_projects/sample_project_3/comparison_genomes/NC_000913.gbk:37448: formate ==> format
data/cct-1.0.0/sample_projects/sample_project_3/comparison_genomes/NC_000913.gbk:37456: formate ==> format
data/cct-1.0.0/sample_projects/sample_project_3/comparison_genomes/NC_000913.gbk:38125: formate ==> format
data/cct-1.0.0/sample_projects/sample_project_3/comparison_genomes/NC_000913.gbk:40794: dessication ==> desiccation
data/cct-1.0.0/sample_projects/sample_project_3/comparison_genomes/NC_000913.gbk:41994: familiy ==> family
data/cct-1.0.0/sample_projects/sample_project_3/comparison_genomes/NC_000913.gbk:46952: Holliday ==> Holiday
data/cct-1.0.0/sample_projects/sample_project_3/comparison_genomes/NC_000913.gbk:46959: Holliday ==> Holiday
data/cct-1.0.0/sample_projects/sample_project_3/comparison_genomes/NC_000913.gbk:46982: Holliday ==> Holiday
data/cct-1.0.0/sample_projects/sample_project_3/comparison_genomes/NC_000913.gbk:46989: Holliday ==> Holiday
data/cct-1.0.0/sample_projects/sample_project_3/comparison_genomes/NC_000913.gbk:47032: Holliday ==> Holiday
data/cct-1.0.0/sample_projects/sample_project_3/comparison_genomes/NC_000913.gbk:47039: Holliday ==> Holiday
data/cct-1.0.0/sample_projects/sample_project_3/comparison_genomes/NC_000913.gbk:48302: familiy ==> family
data/cct-1.0.0/sample_projects/sample_project_3/comparison_genomes/NC_000913.gbk:48814: fliE ==> file
data/cct-1.0.0/sample_projects/sample_project_3/comparison_genomes/NC_000913.gbk:48819: fliE ==> file
data/cct-1.0.0/sample_projects/sample_project_3/comparison_genomes/NC_000913.gbk:49031: cheC ==> check
data/cct-1.0.0/sample_projects/sample_project_3/comparison_genomes/NC_000913.gbk:49688: Ser ==> Set
data/cct-1.0.0/sample_projects/sample_project_3/comparison_genomes/NC_000913.gbk:50998: dessication ==> desiccation
data/cct-1.0.0/sample_projects/sample_project_3/comparison_genomes/NC_000913.gbk:51284: som ==> some
data/cct-1.0.0/sample_projects/sample_project_3/comparison_genomes/NC_000913.gbk:51344: som ==> some
data/cct-1.0.0/sample_projects/sample_project_3/comparison_genomes/NC_000913.gbk:51555: dessication ==> desiccation
data/cct-1.0.0/sample_projects/sample_project_3/comparison_genomes/NC_000913.gbk:51591: dessication ==> desiccation
data/cct-1.0.0/sample_projects/sample_project_3/comparison_genomes/NC_000913.gbk:51679: dessication ==> desiccation
data/cct-1.0.0/sample_projects/sample_project_3/comparison_genomes/NC_000913.gbk:51716: dessication ==> desiccation
data/cct-1.0.0/sample_projects/sample_project_3/comparison_genomes/NC_000913.gbk:52422: wtih ==> with
data/cct-1.0.0/sample_projects/sample_project_3/comparison_genomes/NC_000913.gbk:53012: thiD ==> this
data/cct-1.0.0/sample_projects/sample_project_3/comparison_genomes/NC_000913.gbk:53017: thiD ==> this
data/cct-1.0.0/sample_projects/sample_project_3/comparison_genomes/NC_000913.gbk:54354: familiy ==> family
data/cct-1.0.0/sample_projects/sample_project_3/comparison_genomes/NC_000913.gbk:54643: fpr ==> for, far, fps
data/cct-1.0.0/sample_projects/sample_project_3/comparison_genomes/NC_000913.gbk:54651: fpr ==> for, far, fps
data/cct-1.0.0/sample_projects/sample_project_3/comparison_genomes/NC_000913.gbk:54656: FPr ==> for, far, fps
data/cct-1.0.0/sample_projects/sample_project_3/comparison_genomes/NC_000913.gbk:55937: familiy ==> family
data/cct-1.0.0/sample_projects/sample_project_3/comparison_genomes/NC_000913.gbk:56301: parD ==> part
data/cct-1.0.0/sample_projects/sample_project_3/comparison_genomes/NC_000913.gbk:58197: folX ==> folks
data/cct-1.0.0/sample_projects/sample_project_3/comparison_genomes/NC_000913.gbk:58202: folX ==> folks
data/cct-1.0.0/sample_projects/sample_project_3/comparison_genomes/NC_000913.gbk:58593: hisT ==> heist, his
data/cct-1.0.0/sample_projects/sample_project_3/comparison_genomes/NC_000913.gbk:60153: familiy ==> family
data/cct-1.0.0/sample_projects/sample_project_3/comparison_genomes/NC_000913.gbk:60600: valU ==> value
data/cct-1.0.0/sample_projects/sample_project_3/comparison_genomes/NC_000913.gbk:60605: valU ==> value
data/cct-1.0.0/sample_projects/sample_project_3/comparison_genomes/NC_000913.gbk:60608: GUD ==> GOOD
data/cct-1.0.0/sample_projects/sample_project_3/comparison_genomes/NC_000913.gbk:60619: valU ==> value
data/cct-1.0.0/sample_projects/sample_project_3/comparison_genomes/NC_000913.gbk:60625: GUD ==> GOOD
data/cct-1.0.0/sample_projects/sample_project_3/comparison_genomes/NC_000913.gbk:60636: valU ==> value
data/cct-1.0.0/sample_projects/sample_project_3/comparison_genomes/NC_000913.gbk:60642: GUD ==> GOOD
data/cct-1.0.0/sample_projects/sample_project_3/comparison_genomes/NC_000913.gbk:62926: formate ==> format
data/cct-1.0.0/sample_projects/sample_project_3/comparison_genomes/NC_000913.gbk:62926: formate ==> format
data/cct-1.0.0/sample_projects/sample_project_3/comparison_genomes/NC_000913.gbk:62931: formate ==> format
data/cct-1.0.0/sample_projects/sample_project_3/comparison_genomes/NC_000913.gbk:62931: formate ==> format
data/cct-1.0.0/sample_projects/sample_project_3/comparison_genomes/NC_000913.gbk:63015: hda ==> had
data/cct-1.0.0/sample_projects/sample_project_3/comparison_genomes/NC_000913.gbk:63020: hda ==> had
data/cct-1.0.0/sample_projects/sample_project_3/comparison_genomes/NC_000913.gbk:63571: formate ==> format
data/cct-1.0.0/sample_projects/sample_project_3/comparison_genomes/NC_000913.gbk:65255: formate ==> format
data/cct-1.0.0/sample_projects/sample_project_3/comparison_genomes/NC_000913.gbk:67202: familiy ==> family
data/cct-1.0.0/sample_projects/sample_project_3/comparison_genomes/NC_000913.gbk:67935: Ser ==> Set
data/cct-1.0.0/sample_projects/sample_project_3/comparison_genomes/NC_000913.gbk:68418: formate ==> format
data/cct-1.0.0/sample_projects/sample_project_3/comparison_genomes/NC_000913.gbk:68423: formate ==> format
data/cct-1.0.0/sample_projects/sample_project_3/comparison_genomes/NC_000913.gbk:68582: formate ==> format
data/cct-1.0.0/sample_projects/sample_project_3/comparison_genomes/NC_000913.gbk:68737: formate ==> format
data/cct-1.0.0/sample_projects/sample_project_3/comparison_genomes/NC_000913.gbk:68918: formate ==> format
data/cct-1.0.0/sample_projects/sample_project_3/comparison_genomes/NC_000913.gbk:68927: formate ==> format
data/cct-1.0.0/sample_projects/sample_project_3/comparison_genomes/NC_000913.gbk:72975: occuring ==> occurring
data/cct-1.0.0/sample_projects/sample_project_3/comparison_genomes/NC_000913.gbk:73755: familiy ==> family
data/cct-1.0.0/sample_projects/sample_project_3/comparison_genomes/NC_000913.gbk:78428: formate ==> format
data/cct-1.0.0/sample_projects/sample_project_3/comparison_genomes/NC_000913.gbk:78751: garD ==> guard
data/cct-1.0.0/sample_projects/sample_project_3/comparison_genomes/NC_000913.gbk:78756: garD ==> guard
data/cct-1.0.0/sample_projects/sample_project_3/comparison_genomes/NC_000913.gbk:81151: nanE ==> name
data/cct-1.0.0/sample_projects/sample_project_3/comparison_genomes/NC_000913.gbk:81156: nanE ==> name
data/cct-1.0.0/sample_projects/sample_project_3/comparison_genomes/NC_000913.gbk:81527: familiy ==> family
data/cct-1.0.0/sample_projects/sample_project_3/comparison_genomes/NC_000913.gbk:86007: familiy ==> family
data/cct-1.0.0/sample_projects/sample_project_3/comparison_genomes/NC_000913.gbk:86105: familiy ==> family
data/cct-1.0.0/sample_projects/sample_project_3/comparison_genomes/NC_000913.gbk:86528: familiy ==> family
data/cct-1.0.0/sample_projects/sample_project_3/comparison_genomes/NC_000913.gbk:88660: familiy ==> family
data/cct-1.0.0/sample_projects/sample_project_3/comparison_genomes/NC_000913.gbk:89412: formate ==> format
data/cct-1.0.0/sample_projects/sample_project_3/comparison_genomes/NC_000913.gbk:90558: Ser ==> Set
data/cct-1.0.0/sample_projects/sample_project_3/comparison_genomes/NC_000913.gbk:92205: Holliday ==> Holiday
data/cct-1.0.0/sample_projects/sample_project_3/comparison_genomes/NC_000913.gbk:92212: Holliday ==> Holiday
data/cct-1.0.0/sample_projects/sample_project_3/comparison_genomes/NC_000913.gbk:92477: tranport ==> transport
data/cct-1.0.0/sample_projects/sample_project_3/comparison_genomes/NC_000913.gbk:92642: sytem ==> system
data/cct-1.0.0/sample_projects/sample_project_3/comparison_genomes/NC_000913.gbk:92684: wtih ==> with
data/cct-1.0.0/sample_projects/sample_project_3/comparison_genomes/NC_000913.gbk:94451: uncE ==> once
data/cct-1.0.0/sample_projects/sample_project_3/comparison_genomes/NC_000913.gbk:94484: FO ==> OF, FOR
data/cct-1.0.0/sample_projects/sample_project_3/comparison_genomes/NC_000913.gbk:95993: hisT ==> heist, his
data/cct-1.0.0/sample_projects/sample_project_3/comparison_genomes/NC_000913.gbk:98290: formate ==> format
data/cct-1.0.0/sample_projects/sample_project_3/comparison_genomes/NC_000913.gbk:98295: formate ==> format
data/cct-1.0.0/sample_projects/sample_project_3/comparison_genomes/NC_000913.gbk:98317: formate ==> format
data/cct-1.0.0/sample_projects/sample_project_3/comparison_genomes/NC_000913.gbk:98325: formate ==> format
data/cct-1.0.0/sample_projects/sample_project_3/comparison_genomes/NC_000913.gbk:98346: formate ==> format
data/cct-1.0.0/sample_projects/sample_project_3/comparison_genomes/NC_000913.gbk:98352: formate ==> format
data/cct-1.0.0/sample_projects/sample_project_3/comparison_genomes/NC_000913.gbk:98381: formate ==> format
data/cct-1.0.0/sample_projects/sample_project_3/comparison_genomes/NC_000913.gbk:98414: formate ==> format
data/cct-1.0.0/sample_projects/sample_project_3/comparison_genomes/NC_000913.gbk:98420: formate ==> format
data/cct-1.0.0/sample_projects/sample_project_3/comparison_genomes/NC_000913.gbk:98704: familiy ==> family
data/cct-1.0.0/sample_projects/sample_project_3/comparison_genomes/NC_000913.gbk:99113: fpr ==> for, far, fps
data/cct-1.0.0/sample_projects/sample_project_3/comparison_genomes/NC_000913.gbk:99118: fpr ==> for, far, fps
data/cct-1.0.0/sample_projects/sample_project_3/comparison_genomes/NC_000913.gbk:99827: formate ==> format
data/cct-1.0.0/sample_projects/sample_project_3/comparison_genomes/NC_000913.gbk:99831: formate ==> format
data/cct-1.0.0/sample_projects/sample_project_3/comparison_genomes/NC_000913.gbk:99861: formate ==> format
data/cct-1.0.0/sample_projects/sample_project_3/comparison_genomes/NC_000913.gbk:99867: formate ==> format
data/cct-1.0.0/sample_projects/sample_project_3/comparison_genomes/NC_000913.gbk:100117: mor ==> more
data/cct-1.0.0/sample_projects/sample_project_3/comparison_genomes/NC_000913.gbk:100934: thiE ==> the, this
data/cct-1.0.0/sample_projects/sample_project_3/comparison_genomes/NC_000913.gbk:100939: thiE ==> the, this
data/cct-1.0.0/sample_projects/sample_project_3/comparison_genomes/NC_000913.gbk:102247: exrA ==> extra
data/cct-1.0.0/sample_projects/sample_project_3/comparison_genomes/NC_000913.gbk:102466: groP ==> group, drop
data/cct-1.0.0/sample_projects/sample_project_3/comparison_genomes/NC_000913.gbk:103216: formate ==> format
data/cct-1.0.0/sample_projects/sample_project_3/comparison_genomes/NC_000913.gbk:103222: formate ==> format
data/cct-1.0.0/sample_projects/sample_project_3/comparison_genomes/NC_000913.gbk:103366: familiy ==> family
data/cct-1.0.0/sample_projects/sample_project_3/comparison_genomes/NC_000913.gbk:103383: alsE ==> also, else, false
data/cct-1.0.0/sample_projects/sample_project_3/comparison_genomes/NC_000913.gbk:103388: alsE ==> also, else, false
data/cct-1.0.0/sample_projects/sample_project_3/comparison_genomes/NC_000913.gbk:104914: pres ==> press
data/cct-1.0.0/sample_projects/sample_project_3/comparison_genomes/NC_000913.gbk:109163: fimE ==> fixme, time
data/cct-1.0.0/sample_projects/sample_project_3/comparison_genomes/NC_000913.gbk:109168: fimE ==> fixme, time
data/cct-1.0.0/sample_projects/sample_project_3/comparison_genomes/NC_000913.gbk:110821: formate ==> format
data/cct-1.0.0/sample_projects/sample_project_3/reference_genome/NC_004463.gbk:4829: formate ==> format
data/cct-1.0.0/sample_projects/sample_project_3/reference_genome/NC_004463.gbk:4986: formate ==> format
data/cct-1.0.0/sample_projects/sample_project_3/reference_genome/NC_004463.gbk:16168: FWE ==> FEW
data/cct-1.0.0/sample_projects/sample_project_3/reference_genome/NC_004463.gbk:22326: dependant ==> dependent
data/cct-1.0.0/sample_projects/sample_project_3/reference_genome/NC_004463.gbk:25433: dependant ==> dependent
data/cct-1.0.0/sample_projects/sample_project_3/reference_genome/NC_004463.gbk:27533: holliday ==> holiday
data/cct-1.0.0/sample_projects/sample_project_3/reference_genome/NC_004463.gbk:27552: holliday ==> holiday
data/cct-1.0.0/sample_projects/sample_project_3/reference_genome/NC_004463.gbk:27569: holliday ==> holiday
data/cct-1.0.0/sample_projects/sample_project_3/reference_genome/NC_004463.gbk:40884: formate ==> format
data/cct-1.0.0/sample_projects/sample_project_3/reference_genome/NC_004463.gbk:49678: formate ==> format
data/cct-1.0.0/sample_projects/sample_project_3/reference_genome/NC_004463.gbk:55737: formate ==> format
data/cct-1.0.0/sample_projects/sample_project_3/reference_genome/NC_004463.gbk:55755: formate ==> format
data/cct-1.0.0/sample_projects/sample_project_3/reference_genome/NC_004463.gbk:55773: formate ==> format
data/cct-1.0.0/sample_projects/sample_project_3/reference_genome/NC_004463.gbk:56020: formate ==> format
data/cct-1.0.0/sample_projects/sample_project_3/reference_genome/NC_004463.gbk:56039: formate ==> format
data/cct-1.0.0/sample_projects/sample_project_3/reference_genome/NC_004463.gbk:57128: norE ==> nor, more
data/cct-1.0.0/sample_projects/sample_project_3/reference_genome/NC_004463.gbk:57132: norE ==> nor, more
data/cct-1.0.0/sample_projects/sample_project_3/reference_genome/NC_004463.gbk:67350: formate ==> format
data/cct-1.0.0/sample_projects/sample_project_3/reference_genome/NC_004463.gbk:69943: ND ==> AND, 2ND
data/cct-1.0.0/sample_projects/sample_project_3/reference_genome/NC_004463.gbk:97270: formate ==> format
data/cct-1.0.0/sample_projects/sample_project_3/reference_genome/NC_004463.gbk:97291: formate ==> format
data/cct-1.0.0/sample_projects/sample_project_3/reference_genome/NC_004463.gbk:97304: formate ==> format
data/cct-1.0.0/sample_projects/sample_project_3/reference_genome/NC_004463.gbk:97323: formate ==> format
data/cct-1.0.0/sample_projects/sample_project_3/reference_genome/NC_004463.gbk:103078: fliE ==> file
data/cct-1.0.0/sample_projects/sample_project_3/reference_genome/NC_004463.gbk:103082: fliE ==> file
data/cct-1.0.0/sample_projects/sample_project_3/reference_genome/NC_004463.gbk:104233: garD ==> guard
data/cct-1.0.0/sample_projects/sample_project_3/reference_genome/NC_004463.gbk:104237: garD ==> guard
data/cct-1.0.0/sample_projects/sample_project_3/reference_genome/NC_004463.gbk:104805: thiD ==> this
data/cct-1.0.0/sample_projects/sample_project_3/reference_genome/NC_004463.gbk:104809: thiD ==> this
data/cct-1.0.0/sample_projects/sample_project_3/reference_genome/NC_004463.gbk:118324: thiE ==> the, this
data/cct-1.0.0/sample_projects/sample_project_3/reference_genome/NC_004463.gbk:118328: thiE ==> the, this
data/cct-1.0.0/sample_projects/sample_project_3/reference_genome/NC_004463.gbk:122189: fliE ==> file
data/cct-1.0.0/sample_projects/sample_project_3/reference_genome/NC_004463.gbk:122193: fliE ==> file
data/cct-1.0.0/sample_projects/sample_project_4/comparison_genomes/L09136.gbk:44: CROSSREFERENCE ==> CROSS-REFERENCE
data/cct-1.0.0/sample_projects/sample_project_4/comparison_genomes/L09137.gbk:77: CROSSREFERENCE ==> CROSS-REFERENCE
data/cct-1.0.0/sample_projects/sample_project_5/comparison_genomes/E_coli.gbk:403: groP ==> group, drop
data/cct-1.0.0/sample_projects/sample_project_5/comparison_genomes/E_coli.gbk:438: groP ==> group, drop
data/cct-1.0.0/sample_projects/sample_project_5/comparison_genomes/E_coli.gbk:4394: ptd ==> pdf
data/cct-1.0.0/sample_projects/sample_project_5/comparison_genomes/E_coli.gbk:5117: yaeR ==> year
data/cct-1.0.0/sample_projects/sample_project_5/comparison_genomes/E_coli.gbk:5122: yaeR ==> year
data/cct-1.0.0/sample_projects/sample_project_5/comparison_genomes/E_coli.gbk:10046: familiy ==> family
data/cct-1.0.0/sample_projects/sample_project_5/comparison_genomes/E_coli.gbk:10399: auxillary ==> auxiliary
data/cct-1.0.0/sample_projects/sample_project_5/comparison_genomes/E_coli.gbk:10426: auxillary ==> auxiliary
data/cct-1.0.0/sample_projects/sample_project_5/comparison_genomes/E_coli.gbk:10456: auxillary ==> auxiliary
data/cct-1.0.0/sample_projects/sample_project_5/comparison_genomes/E_coli.gbk:11444: familiy ==> family
data/cct-1.0.0/sample_projects/sample_project_5/comparison_genomes/E_coli.gbk:13863: auxillary ==> auxiliary
data/cct-1.0.0/sample_projects/sample_project_5/comparison_genomes/E_coli.gbk:13935: familiy ==> family
data/cct-1.0.0/sample_projects/sample_project_5/comparison_genomes/E_coli.gbk:14015: Holliday ==> Holiday
data/cct-1.0.0/sample_projects/sample_project_5/comparison_genomes/E_coli.gbk:14023: Holliday ==> Holiday
data/cct-1.0.0/sample_projects/sample_project_5/comparison_genomes/E_coli.gbk:14325: appY ==> apply
data/cct-1.0.0/sample_projects/sample_project_5/comparison_genomes/E_coli.gbk:14330: appY ==> apply
data/cct-1.0.0/sample_projects/sample_project_5/comparison_genomes/E_coli.gbk:14395: familiy ==> family
data/cct-1.0.0/sample_projects/sample_project_5/comparison_genomes/E_coli.gbk:15150: tranport ==> transport
data/cct-1.0.0/sample_projects/sample_project_5/comparison_genomes/E_coli.gbk:15448: familiy ==> family
data/cct-1.0.0/sample_projects/sample_project_5/comparison_genomes/E_coli.gbk:17638: wtih ==> with
data/cct-1.0.0/sample_projects/sample_project_5/comparison_genomes/E_coli.gbk:18942: GUD ==> GOOD
data/cct-1.0.0/sample_projects/sample_project_5/comparison_genomes/E_coli.gbk:18976: GUD ==> GOOD
data/cct-1.0.0/sample_projects/sample_project_5/comparison_genomes/E_coli.gbk:19231: dessication ==> desiccation
data/cct-1.0.0/sample_projects/sample_project_5/comparison_genomes/E_coli.gbk:19265: dessication ==> desiccation
data/cct-1.0.0/sample_projects/sample_project_5/comparison_genomes/E_coli.gbk:19301: dessication ==> desiccation
data/cct-1.0.0/sample_projects/sample_project_5/comparison_genomes/E_coli.gbk:20917: formate ==> format
data/cct-1.0.0/sample_projects/sample_project_5/comparison_genomes/E_coli.gbk:20921: formate ==> format
data/cct-1.0.0/sample_projects/sample_project_5/comparison_genomes/E_coli.gbk:20957: formate ==> format
data/cct-1.0.0/sample_projects/sample_project_5/comparison_genomes/E_coli.gbk:22473: Ser ==> Set
data/cct-1.0.0/sample_projects/sample_project_5/comparison_genomes/E_coli.gbk:23007: formate ==> format
data/cct-1.0.0/sample_projects/sample_project_5/comparison_genomes/E_coli.gbk:23028: formate ==> format
data/cct-1.0.0/sample_projects/sample_project_5/comparison_genomes/E_coli.gbk:23034: formate ==> format
data/cct-1.0.0/sample_projects/sample_project_5/comparison_genomes/E_coli.gbk:23063: formate ==> format
data/cct-1.0.0/sample_projects/sample_project_5/comparison_genomes/E_coli.gbk:23063: formate ==> format
data/cct-1.0.0/sample_projects/sample_project_5/comparison_genomes/E_coli.gbk:23068: formate ==> format
data/cct-1.0.0/sample_projects/sample_project_5/comparison_genomes/E_coli.gbk:23068: formate ==> format
data/cct-1.0.0/sample_projects/sample_project_5/comparison_genomes/E_coli.gbk:24784: Ser ==> Set
data/cct-1.0.0/sample_projects/sample_project_5/comparison_genomes/E_coli.gbk:26290: Ser ==> Set
data/cct-1.0.0/sample_projects/sample_project_5/comparison_genomes/E_coli.gbk:26674: ANE ==> AND
data/cct-1.0.0/sample_projects/sample_project_5/comparison_genomes/E_coli.gbk:30250: asociated ==> associated
data/cct-1.0.0/sample_projects/sample_project_5/comparison_genomes/E_coli.gbk:30283: tre ==> tree
data/cct-1.0.0/sample_projects/sample_project_5/comparison_genomes/E_coli.gbk:30998: familiy ==> family
data/cct-1.0.0/sample_projects/sample_project_5/comparison_genomes/E_coli.gbk:31420: dessication ==> desiccation
data/cct-1.0.0/sample_projects/sample_project_5/comparison_genomes/E_coli.gbk:32410: familiy ==> family
data/cct-1.0.0/sample_projects/sample_project_5/comparison_genomes/E_coli.gbk:32435: acn ==> can, acne
data/cct-1.0.0/sample_projects/sample_project_5/comparison_genomes/E_coli.gbk:34073: familiy ==> family
data/cct-1.0.0/sample_projects/sample_project_5/comparison_genomes/E_coli.gbk:36110: familiy ==> family
data/cct-1.0.0/sample_projects/sample_project_5/comparison_genomes/E_coli.gbk:36773: familiy ==> family
data/cct-1.0.0/sample_projects/sample_project_5/comparison_genomes/E_coli.gbk:37375: formate ==> format
data/cct-1.0.0/sample_projects/sample_project_5/comparison_genomes/E_coli.gbk:37383: formate ==> format
data/cct-1.0.0/sample_projects/sample_project_5/comparison_genomes/E_coli.gbk:37418: formate ==> format
data/cct-1.0.0/sample_projects/sample_project_5/comparison_genomes/E_coli.gbk:37425: formate ==> format
data/cct-1.0.0/sample_projects/sample_project_5/comparison_genomes/E_coli.gbk:37448: formate ==> format
data/cct-1.0.0/sample_projects/sample_project_5/comparison_genomes/E_coli.gbk:37456: formate ==> format
data/cct-1.0.0/sample_projects/sample_project_5/comparison_genomes/E_coli.gbk:38125: formate ==> format
data/cct-1.0.0/sample_projects/sample_project_5/comparison_genomes/E_coli.gbk:40794: dessication ==> desiccation
data/cct-1.0.0/sample_projects/sample_project_5/comparison_genomes/E_coli.gbk:41994: familiy ==> family
data/cct-1.0.0/sample_projects/sample_project_5/comparison_genomes/E_coli.gbk:46952: Holliday ==> Holiday
data/cct-1.0.0/sample_projects/sample_project_5/comparison_genomes/E_coli.gbk:46959: Holliday ==> Holiday
data/cct-1.0.0/sample_projects/sample_project_5/comparison_genomes/E_coli.gbk:46982: Holliday ==> Holiday
data/cct-1.0.0/sample_projects/sample_project_5/comparison_genomes/E_coli.gbk:46989: Holliday ==> Holiday
data/cct-1.0.0/sample_projects/sample_project_5/comparison_genomes/E_coli.gbk:47032: Holliday ==> Holiday
data/cct-1.0.0/sample_projects/sample_project_5/comparison_genomes/E_coli.gbk:47039: Holliday ==> Holiday
data/cct-1.0.0/sample_projects/sample_project_5/comparison_genomes/E_coli.gbk:48302: familiy ==> family
data/cct-1.0.0/sample_projects/sample_project_5/comparison_genomes/E_coli.gbk:48814: fliE ==> file
data/cct-1.0.0/sample_projects/sample_project_5/comparison_genomes/E_coli.gbk:48819: fliE ==> file
data/cct-1.0.0/sample_projects/sample_project_5/comparison_genomes/E_coli.gbk:49031: cheC ==> check
data/cct-1.0.0/sample_projects/sample_project_5/comparison_genomes/E_coli.gbk:49688: Ser ==> Set
data/cct-1.0.0/sample_projects/sample_project_5/comparison_genomes/E_coli.gbk:50998: dessication ==> desiccation
data/cct-1.0.0/sample_projects/sample_project_5/comparison_genomes/E_coli.gbk:51284: som ==> some
data/cct-1.0.0/sample_projects/sample_project_5/comparison_genomes/E_coli.gbk:51344: som ==> some
data/cct-1.0.0/sample_projects/sample_project_5/comparison_genomes/E_coli.gbk:51555: dessication ==> desiccation
data/cct-1.0.0/sample_projects/sample_project_5/comparison_genomes/E_coli.gbk:51591: dessication ==> desiccation
data/cct-1.0.0/sample_projects/sample_project_5/comparison_genomes/E_coli.gbk:51679: dessication ==> desiccation
data/cct-1.0.0/sample_projects/sample_project_5/comparison_genomes/E_coli.gbk:51716: dessication ==> desiccation
data/cct-1.0.0/sample_projects/sample_project_5/comparison_genomes/E_coli.gbk:52422: wtih ==> with
data/cct-1.0.0/sample_projects/sample_project_5/comparison_genomes/E_coli.gbk:53012: thiD ==> this
data/cct-1.0.0/sample_projects/sample_project_5/comparison_genomes/E_coli.gbk:53017: thiD ==> this
data/cct-1.0.0/sample_projects/sample_project_5/comparison_genomes/E_coli.gbk:54354: familiy ==> family
data/cct-1.0.0/sample_projects/sample_project_5/comparison_genomes/E_coli.gbk:54643: fpr ==> for, far, fps
data/cct-1.0.0/sample_projects/sample_project_5/comparison_genomes/E_coli.gbk:54651: fpr ==> for, far, fps
data/cct-1.0.0/sample_projects/sample_project_5/comparison_genomes/E_coli.gbk:54656: FPr ==> for, far, fps
data/cct-1.0.0/sample_projects/sample_project_5/comparison_genomes/E_coli.gbk:55937: familiy ==> family
data/cct-1.0.0/sample_projects/sample_project_5/comparison_genomes/E_coli.gbk:56301: parD ==> part
data/cct-1.0.0/sample_projects/sample_project_5/comparison_genomes/E_coli.gbk:58197: folX ==> folks
data/cct-1.0.0/sample_projects/sample_project_5/comparison_genomes/E_coli.gbk:58202: folX ==> folks
data/cct-1.0.0/sample_projects/sample_project_5/comparison_genomes/E_coli.gbk:58593: hisT ==> heist, his
data/cct-1.0.0/sample_projects/sample_project_5/comparison_genomes/E_coli.gbk:60153: familiy ==> family
data/cct-1.0.0/sample_projects/sample_project_5/comparison_genomes/E_coli.gbk:60600: valU ==> value
data/cct-1.0.0/sample_projects/sample_project_5/comparison_genomes/E_coli.gbk:60605: valU ==> value
data/cct-1.0.0/sample_projects/sample_project_5/comparison_genomes/E_coli.gbk:60608: GUD ==> GOOD
data/cct-1.0.0/sample_projects/sample_project_5/comparison_genomes/E_coli.gbk:60619: valU ==> value
data/cct-1.0.0/sample_projects/sample_project_5/comparison_genomes/E_coli.gbk:60625: GUD ==> GOOD
data/cct-1.0.0/sample_projects/sample_project_5/comparison_genomes/E_coli.gbk:60636: valU ==> value
data/cct-1.0.0/sample_projects/sample_project_5/comparison_genomes/E_coli.gbk:60642: GUD ==> GOOD
data/cct-1.0.0/sample_projects/sample_project_5/comparison_genomes/E_coli.gbk:62926: formate ==> format
data/cct-1.0.0/sample_projects/sample_project_5/comparison_genomes/E_coli.gbk:62926: formate ==> format
data/cct-1.0.0/sample_projects/sample_project_5/comparison_genomes/E_coli.gbk:62931: formate ==> format
data/cct-1.0.0/sample_projects/sample_project_5/comparison_genomes/E_coli.gbk:62931: formate ==> format
data/cct-1.0.0/sample_projects/sample_project_5/comparison_genomes/E_coli.gbk:63015: hda ==> had
data/cct-1.0.0/sample_projects/sample_project_5/comparison_genomes/E_coli.gbk:63020: hda ==> had
data/cct-1.0.0/sample_projects/sample_project_5/comparison_genomes/E_coli.gbk:63571: formate ==> format
data/cct-1.0.0/sample_projects/sample_project_5/comparison_genomes/E_coli.gbk:65255: formate ==> format
data/cct-1.0.0/sample_projects/sample_project_5/comparison_genomes/E_coli.gbk:67202: familiy ==> family
data/cct-1.0.0/sample_projects/sample_project_5/comparison_genomes/E_coli.gbk:67935: Ser ==> Set
data/cct-1.0.0/sample_projects/sample_project_5/comparison_genomes/E_coli.gbk:68418: formate ==> format
data/cct-1.0.0/sample_projects/sample_project_5/comparison_genomes/E_coli.gbk:68423: formate ==> format
data/cct-1.0.0/sample_projects/sample_project_5/comparison_genomes/E_coli.gbk:68582: formate ==> format
data/cct-1.0.0/sample_projects/sample_project_5/comparison_genomes/E_coli.gbk:68737: formate ==> format
data/cct-1.0.0/sample_projects/sample_project_5/comparison_genomes/E_coli.gbk:68918: formate ==> format
data/cct-1.0.0/sample_projects/sample_project_5/comparison_genomes/E_coli.gbk:68927: formate ==> format
data/cct-1.0.0/sample_projects/sample_project_5/comparison_genomes/E_coli.gbk:72975: occuring ==> occurring
data/cct-1.0.0/sample_projects/sample_project_5/comparison_genomes/E_coli.gbk:73755: familiy ==> family
data/cct-1.0.0/sample_projects/sample_project_5/comparison_genomes/E_coli.gbk:78428: formate ==> format
data/cct-1.0.0/sample_projects/sample_project_5/comparison_genomes/E_coli.gbk:78751: garD ==> guard
data/cct-1.0.0/sample_projects/sample_project_5/comparison_genomes/E_coli.gbk:78756: garD ==> guard
data/cct-1.0.0/sample_projects/sample_project_5/comparison_genomes/E_coli.gbk:81151: nanE ==> name
data/cct-1.0.0/sample_projects/sample_project_5/comparison_genomes/E_coli.gbk:81156: nanE ==> name
data/cct-1.0.0/sample_projects/sample_project_5/comparison_genomes/E_coli.gbk:81527: familiy ==> family
data/cct-1.0.0/sample_projects/sample_project_5/comparison_genomes/E_coli.gbk:86007: familiy ==> family
data/cct-1.0.0/sample_projects/sample_project_5/comparison_genomes/E_coli.gbk:86105: familiy ==> family
data/cct-1.0.0/sample_projects/sample_project_5/comparison_genomes/E_coli.gbk:86528: familiy ==> family
data/cct-1.0.0/sample_projects/sample_project_5/comparison_genomes/E_coli.gbk:88660: familiy ==> family
data/cct-1.0.0/sample_projects/sample_project_5/comparison_genomes/E_coli.gbk:89412: formate ==> format
data/cct-1.0.0/sample_projects/sample_project_5/comparison_genomes/E_coli.gbk:90558: Ser ==> Set
data/cct-1.0.0/sample_projects/sample_project_5/comparison_genomes/E_coli.gbk:92205: Holliday ==> Holiday
data/cct-1.0.0/sample_projects/sample_project_5/comparison_genomes/E_coli.gbk:92212: Holliday ==> Holiday
data/cct-1.0.0/sample_projects/sample_project_5/comparison_genomes/E_coli.gbk:92477: tranport ==> transport
data/cct-1.0.0/sample_projects/sample_project_5/comparison_genomes/E_coli.gbk:92642: sytem ==> system
data/cct-1.0.0/sample_projects/sample_project_5/comparison_genomes/E_coli.gbk:92684: wtih ==> with
data/cct-1.0.0/sample_projects/sample_project_5/comparison_genomes/E_coli.gbk:94451: uncE ==> once
data/cct-1.0.0/sample_projects/sample_project_5/comparison_genomes/E_coli.gbk:94484: FO ==> OF, FOR
data/cct-1.0.0/sample_projects/sample_project_5/comparison_genomes/E_coli.gbk:95993: hisT ==> heist, his
data/cct-1.0.0/sample_projects/sample_project_5/comparison_genomes/E_coli.gbk:98290: formate ==> format
data/cct-1.0.0/sample_projects/sample_project_5/comparison_genomes/E_coli.gbk:98295: formate ==> format
data/cct-1.0.0/sample_projects/sample_project_5/comparison_genomes/E_coli.gbk:98317: formate ==> format
data/cct-1.0.0/sample_projects/sample_project_5/comparison_genomes/E_coli.gbk:98325: formate ==> format
data/cct-1.0.0/sample_projects/sample_project_5/comparison_genomes/E_coli.gbk:98346: formate ==> format
data/cct-1.0.0/sample_projects/sample_project_5/comparison_genomes/E_coli.gbk:98352: formate ==> format
data/cct-1.0.0/sample_projects/sample_project_5/comparison_genomes/E_coli.gbk:98381: formate ==> format
data/cct-1.0.0/sample_projects/sample_project_5/comparison_genomes/E_coli.gbk:98414: formate ==> format
data/cct-1.0.0/sample_projects/sample_project_5/comparison_genomes/E_coli.gbk:98420: formate ==> format
data/cct-1.0.0/sample_projects/sample_project_5/comparison_genomes/E_coli.gbk:98704: familiy ==> family
data/cct-1.0.0/sample_projects/sample_project_5/comparison_genomes/E_coli.gbk:99113: fpr ==> for, far, fps
data/cct-1.0.0/sample_projects/sample_project_5/comparison_genomes/E_coli.gbk:99118: fpr ==> for, far, fps
data/cct-1.0.0/sample_projects/sample_project_5/comparison_genomes/E_coli.gbk:99827: formate ==> format
data/cct-1.0.0/sample_projects/sample_project_5/comparison_genomes/E_coli.gbk:99831: formate ==> format
data/cct-1.0.0/sample_projects/sample_project_5/comparison_genomes/E_coli.gbk:99861: formate ==> format
data/cct-1.0.0/sample_projects/sample_project_5/comparison_genomes/E_coli.gbk:99867: formate ==> format
data/cct-1.0.0/sample_projects/sample_project_5/comparison_genomes/E_coli.gbk:100117: mor ==> more
data/cct-1.0.0/sample_projects/sample_project_5/comparison_genomes/E_coli.gbk:100934: thiE ==> the, this
data/cct-1.0.0/sample_projects/sample_project_5/comparison_genomes/E_coli.gbk:100939: thiE ==> the, this
data/cct-1.0.0/sample_projects/sample_project_5/comparison_genomes/E_coli.gbk:102247: exrA ==> extra
data/cct-1.0.0/sample_projects/sample_project_5/comparison_genomes/E_coli.gbk:102466: groP ==> group, drop
data/cct-1.0.0/sample_projects/sample_project_5/comparison_genomes/E_coli.gbk:103216: formate ==> format
data/cct-1.0.0/sample_projects/sample_project_5/comparison_genomes/E_coli.gbk:103222: formate ==> format
data/cct-1.0.0/sample_projects/sample_project_5/comparison_genomes/E_coli.gbk:103366: familiy ==> family
data/cct-1.0.0/sample_projects/sample_project_5/comparison_genomes/E_coli.gbk:103383: alsE ==> also, else, false
data/cct-1.0.0/sample_projects/sample_project_5/comparison_genomes/E_coli.gbk:103388: alsE ==> also, else, false
data/cct-1.0.0/sample_projects/sample_project_5/comparison_genomes/E_coli.gbk:104914: pres ==> press
data/cct-1.0.0/sample_projects/sample_project_5/comparison_genomes/E_coli.gbk:109163: fimE ==> fixme, time
data/cct-1.0.0/sample_projects/sample_project_5/comparison_genomes/E_coli.gbk:109168: fimE ==> fixme, time
data/cct-1.0.0/sample_projects/sample_project_5/comparison_genomes/E_coli.gbk:110821: formate ==> format
data/cct-1.0.0/sample_projects/sample_project_5/reference_genome/NC_001823.gbk:818: Ser ==> Set
data/cct-1.0.0/sample_projects/sample_project_5/reference_genome/NC_001823.gbk:1536: Ser ==> Set
data/cct-1.0.0/scripts/cgview_comparison_tool.pl:22: enviroment ==> environment
data/cct-1.0.0/scripts/cgview_comparison_tool.pl:2072: analyis ==> analysis
data/cct-1.0.0/scripts/remove_long_seqs.sh:80: filesnames ==> filenames
data/cct-1.0.0/scripts/remove_short_seqs.sh:83: filesnames ==> filenames
data/cct-1.0.0/scripts/redraw_maps.sh:96: filesnames ==> filenames
data/cct-1.0.0/scripts/create_zoomed_maps.sh:119: filesnames ==> filenames
data/cct-1.0.0/test_projects/test_blastp/project_settings.conf:193: betweeen ==> between
data/cct-1.0.0/test_projects/test_tblastn/project_settings.conf:193: betweeen ==> between
data/cct-1.0.0/debian/mans/cgview_comparison_tool.1:17: analyis ==> analysis
data/cct-1.0.0/.pc/cgview_path.patch/scripts/redraw_maps.sh:96: filesnames ==> filenames
data/cct-1.0.0/.pc/cgview_path.patch/scripts/create_zoomed_maps.sh:119: filesnames ==> filenames