data/comet-ms-2019015+cleaned1/CometCodingStyleGuidelines.txt:5: identation ==> indentation
data/comet-ms-2019015+cleaned1/Comet.cpp:1539: substracted ==> subtracted
data/comet-ms-2019015+cleaned1/CometSearch/CometWritePercolator.h:46: iNterm ==> interim, intern
data/comet-ms-2019015+cleaned1/CometSearch/CometSearch.cpp:53: Initally ==> Initially
data/comet-ms-2019015+cleaned1/CometSearch/CometSearch.cpp:68: ba ==> by, be
data/comet-ms-2019015+cleaned1/CometSearch/CometSearch.cpp:71: ba ==> by, be
data/comet-ms-2019015+cleaned1/CometSearch/CometSearch.cpp:957: ba ==> by, be
data/comet-ms-2019015+cleaned1/CometSearch/CometSearch.cpp:960: ba ==> by, be
data/comet-ms-2019015+cleaned1/CometSearch/CometSearch.cpp:3988: contraint ==> constraint
data/comet-ms-2019015+cleaned1/CometSearch/CometSearch.cpp:4005: contraint ==> constraint
data/comet-ms-2019015+cleaned1/CometSearch/CometSearch.cpp:4021: contraint ==> constraint
data/comet-ms-2019015+cleaned1/CometSearch/CometSearch.cpp:4035: contraint ==> constraint
data/comet-ms-2019015+cleaned1/CometSearch/CometSearch.cpp:4047: contraint ==> constraint
data/comet-ms-2019015+cleaned1/CometSearch/CometSearch.cpp:4191: supresses ==> suppresses
data/comet-ms-2019015+cleaned1/CometSearch/CometSearch.cpp:4206: contraint ==> constraint
data/comet-ms-2019015+cleaned1/CometSearch/CometSearch.cpp:4223: contraint ==> constraint
data/comet-ms-2019015+cleaned1/CometSearch/CometWriteOut.cpp:340: cummulative ==> cumulative
data/comet-ms-2019015+cleaned1/CometSearch/CometWriteOut.cpp:351: HIST ==> HEIST, HIS
data/comet-ms-2019015+cleaned1/CometSearch/ThreadPool.h:233: prameter ==> parameter
data/comet-ms-2019015+cleaned1/CometSearch/CometDataInternal.h:185: accomodate ==> accommodate
data/comet-ms-2019015+cleaned1/CometSearch/CometDataInternal.h:186: accomodate ==> accommodate
data/comet-ms-2019015+cleaned1/CometSearch/CometPostAnalysis.cpp:506: Cummulative ==> Cumulative
data/comet-ms-2019015+cleaned1/CometSearch/CometPostAnalysis.cpp:544: cummulative ==> cumulative
data/comet-ms-2019015+cleaned1/CometSearch/CometPostAnalysis.cpp:556: cummulative ==> cumulative
data/comet-ms-2019015+cleaned1/CometSearch/CometPreprocess.cpp:355: ba ==> by, be
data/comet-ms-2019015+cleaned1/CometSearch/CometPreprocess.cpp:358: ba ==> by, be
data/comet-ms-2019015+cleaned1/CometSearch/CometPreprocess.cpp:376: ba ==> by, be
data/comet-ms-2019015+cleaned1/CometSearch/CometPreprocess.cpp:379: ba ==> by, be
data/comet-ms-2019015+cleaned1/CometSearch/CometPreprocess.cpp:468: ba ==> by, be
data/comet-ms-2019015+cleaned1/CometSearch/CometPreprocess.cpp:471: ba ==> by, be
data/comet-ms-2019015+cleaned1/CometSearch/CometPreprocess.cpp:491: ba ==> by, be
data/comet-ms-2019015+cleaned1/CometSearch/CometPreprocess.cpp:494: ba ==> by, be
data/comet-ms-2019015+cleaned1/CometSearch/CometPreprocess.cpp:522: ba ==> by, be
data/comet-ms-2019015+cleaned1/CometSearch/CometPreprocess.cpp:525: ba ==> by, be
data/comet-ms-2019015+cleaned1/CometSearch/CometPreprocess.cpp:545: ba ==> by, be
data/comet-ms-2019015+cleaned1/CometSearch/CometPreprocess.cpp:548: ba ==> by, be
data/comet-ms-2019015+cleaned1/CometSearch/CometPreprocess.cpp:595: ba ==> by, be
data/comet-ms-2019015+cleaned1/CometSearch/CometPreprocess.cpp:598: ba ==> by, be
data/comet-ms-2019015+cleaned1/CometSearch/CometPreprocess.cpp:618: ba ==> by, be
data/comet-ms-2019015+cleaned1/CometSearch/CometPreprocess.cpp:621: ba ==> by, be
data/comet-ms-2019015+cleaned1/CometSearch/CometPreprocess.cpp:641: ba ==> by, be
data/comet-ms-2019015+cleaned1/CometSearch/CometPreprocess.cpp:644: ba ==> by, be
data/comet-ms-2019015+cleaned1/CometSearch/CometPreprocess.cpp:1674: Initally ==> Initially
data/comet-ms-2019015+cleaned1/CometSearch/CometPreprocess.cpp:1689: ba ==> by, be
data/comet-ms-2019015+cleaned1/CometSearch/CometPreprocess.cpp:1692: ba ==> by, be
data/comet-ms-2019015+cleaned1/CometSearch/CometPreprocess.cpp:1710: ba ==> by, be
data/comet-ms-2019015+cleaned1/CometSearch/CometPreprocess.cpp:1713: ba ==> by, be
data/comet-ms-2019015+cleaned1/CometSearch/CometPreprocess.cpp:1731: ba ==> by, be
data/comet-ms-2019015+cleaned1/CometSearch/CometPreprocess.cpp:1734: ba ==> by, be
data/comet-ms-2019015+cleaned1/CometSearch/CometPreprocess.cpp:1752: ba ==> by, be
data/comet-ms-2019015+cleaned1/CometSearch/CometPreprocess.cpp:1755: ba ==> by, be
data/comet-ms-2019015+cleaned1/CometSearch/CometPreprocess.cpp:1773: ba ==> by, be
data/comet-ms-2019015+cleaned1/CometSearch/CometPreprocess.cpp:1776: ba ==> by, be
data/comet-ms-2019015+cleaned1/CometSearch/CometPreprocess.cpp:1957: ba ==> by, be
data/comet-ms-2019015+cleaned1/CometSearch/CometPreprocess.cpp:1960: ba ==> by, be
data/comet-ms-2019015+cleaned1/CometSearch/CometPreprocess.cpp:2048: ba ==> by, be
data/comet-ms-2019015+cleaned1/CometSearch/CometPreprocess.cpp:2051: ba ==> by, be
data/comet-ms-2019015+cleaned1/CometSearch/CometPreprocess.cpp:2071: ba ==> by, be
data/comet-ms-2019015+cleaned1/CometSearch/CometPreprocess.cpp:2074: ba ==> by, be
data/comet-ms-2019015+cleaned1/CometSearch/CometWritePercolator.cpp:256: iNterm ==> interim, intern
data/comet-ms-2019015+cleaned1/CometSearch/CometWritePercolator.cpp:262: iNterm ==> interim, intern
data/comet-ms-2019015+cleaned1/CometSearch/CometWritePercolator.cpp:291: iNterm ==> interim, intern
data/comet-ms-2019015+cleaned1/CometSearch/CometWritePercolator.cpp:405: iNterm ==> interim, intern
data/comet-ms-2019015+cleaned1/CometSearch/CometWritePercolator.cpp:410: iNterm ==> interim, intern
data/comet-ms-2019015+cleaned1/CometSearch/CometWritePercolator.cpp:417: iNterm ==> interim, intern
data/comet-ms-2019015+cleaned1/CometSearch/CometWritePercolator.cpp:424: iNterm ==> interim, intern
data/comet-ms-2019015+cleaned1/CometSearch/CometWritePercolator.cpp:432: iNterm ==> interim, intern
data/comet-ms-2019015+cleaned1/CometSearch/CometSearchManager.cpp:61: locahost ==> localhost
data/comet-ms-2019015+cleaned1/CometSearch/CometSearchManager.cpp:66: locahost ==> localhost
data/comet-ms-2019015+cleaned1/CometSearch/CometSearchManager.cpp:259: ba ==> by, be
data/comet-ms-2019015+cleaned1/CometSearch/CometSearchManager.cpp:262: ba ==> by, be
data/comet-ms-2019015+cleaned1/CometSearch/CometSearchManager.cpp:275: ba ==> by, be
data/comet-ms-2019015+cleaned1/CometSearch/CometSearchManager.cpp:278: ba ==> by, be
data/comet-ms-2019015+cleaned1/CometSearch/CometSearchManager.cpp:2824: irregardless ==> regardless