data/covtobed-1.2.0+dfsg/base.cpp:169: unkown ==> unknown
data/covtobed-1.2.0+dfsg/benchmark/README.md:4: exept ==> except, exempt
data/covtobed-1.2.0+dfsg/benchmark/benchmark_disk.sh:10: TE ==> THE, BE, WE
data/covtobed-1.2.0+dfsg/benchmark/benchmark_disk.sh:14: TE ==> THE, BE, WE
data/covtobed-1.2.0+dfsg/benchmark/benchmark_disk.sh:14: TE ==> THE, BE, WE
data/covtobed-1.2.0+dfsg/benchmark/benchmark_disk.sh:14: TE ==> THE, BE, WE
data/covtobed-1.2.0+dfsg/benchmark/benchmark_stream.sh:10: TE ==> THE, BE, WE
data/covtobed-1.2.0+dfsg/benchmark/benchmark_stream.sh:14: TE ==> THE, BE, WE
data/covtobed-1.2.0+dfsg/benchmark/benchmark_stream.sh:14: TE ==> THE, BE, WE
data/covtobed-1.2.0+dfsg/benchmark/benchmark_stream.sh:14: TE ==> THE, BE, WE
data/covtobed-1.2.0+dfsg/benchmark/disk_file.sh:10: TE ==> THE, BE, WE
data/covtobed-1.2.0+dfsg/benchmark/get_datasets.sh:10: TE ==> THE, BE, WE
data/covtobed-1.2.0+dfsg/benchmark/get_datasets.sh:11: TE ==> THE, BE, WE
data/covtobed-1.2.0+dfsg/benchmark/get_datasets.sh:12: TE ==> THE, BE, WE
data/covtobed-1.2.0+dfsg/benchmark/stream_file.sh:10: TE ==> THE, BE, WE
data/covtobed-1.2.0+dfsg/benchmark/disk/benchmark2_example1.csv:2: TE ==> THE, BE, WE
data/covtobed-1.2.0+dfsg/benchmark/disk/benchmark2_example1.csv:3: TE ==> THE, BE, WE
data/covtobed-1.2.0+dfsg/benchmark/disk/benchmark2_example1.csv:4: TE ==> THE, BE, WE
data/covtobed-1.2.0+dfsg/benchmark/disk/benchmark2_example1.md:3: TE ==> THE, BE, WE
data/covtobed-1.2.0+dfsg/benchmark/disk/benchmark2_example1.md:4: TE ==> THE, BE, WE
data/covtobed-1.2.0+dfsg/benchmark/disk/benchmark2_example1.md:5: TE ==> THE, BE, WE
data/covtobed-1.2.0+dfsg/benchmark/disk/benchmark2_example2.csv:2: TE ==> THE, BE, WE
data/covtobed-1.2.0+dfsg/benchmark/disk/benchmark2_example2.csv:3: TE ==> THE, BE, WE
data/covtobed-1.2.0+dfsg/benchmark/disk/benchmark2_example2.csv:4: TE ==> THE, BE, WE
data/covtobed-1.2.0+dfsg/benchmark/disk/benchmark2_example2.md:3: TE ==> THE, BE, WE
data/covtobed-1.2.0+dfsg/benchmark/disk/benchmark2_example2.md:4: TE ==> THE, BE, WE
data/covtobed-1.2.0+dfsg/benchmark/disk/benchmark2_example2.md:5: TE ==> THE, BE, WE
data/covtobed-1.2.0+dfsg/benchmark/disk/benchmark_example1.csv:2: TE ==> THE, BE, WE
data/covtobed-1.2.0+dfsg/benchmark/disk/benchmark_example1.csv:3: TE ==> THE, BE, WE
data/covtobed-1.2.0+dfsg/benchmark/disk/benchmark_example1.csv:4: TE ==> THE, BE, WE
data/covtobed-1.2.0+dfsg/benchmark/disk/benchmark_example1.csv:5: TE ==> THE, BE, WE
data/covtobed-1.2.0+dfsg/benchmark/disk/benchmark_example1.md:3: TE ==> THE, BE, WE
data/covtobed-1.2.0+dfsg/benchmark/disk/benchmark_example1.md:4: TE ==> THE, BE, WE
data/covtobed-1.2.0+dfsg/benchmark/disk/benchmark_example1.md:5: TE ==> THE, BE, WE
data/covtobed-1.2.0+dfsg/benchmark/disk/benchmark_example1.md:6: TE ==> THE, BE, WE
data/covtobed-1.2.0+dfsg/benchmark/disk/benchmark_example2.csv:2: TE ==> THE, BE, WE
data/covtobed-1.2.0+dfsg/benchmark/disk/benchmark_example2.csv:3: TE ==> THE, BE, WE
data/covtobed-1.2.0+dfsg/benchmark/disk/benchmark_example2.csv:4: TE ==> THE, BE, WE
data/covtobed-1.2.0+dfsg/benchmark/disk/benchmark_example2.csv:5: TE ==> THE, BE, WE
data/covtobed-1.2.0+dfsg/benchmark/disk/benchmark_example2.md:3: TE ==> THE, BE, WE
data/covtobed-1.2.0+dfsg/benchmark/disk/benchmark_example2.md:4: TE ==> THE, BE, WE
data/covtobed-1.2.0+dfsg/benchmark/disk/benchmark_example2.md:5: TE ==> THE, BE, WE
data/covtobed-1.2.0+dfsg/benchmark/disk/benchmark_example2.md:6: TE ==> THE, BE, WE
data/covtobed-1.2.0+dfsg/benchmark/disk/benchmark_threads.md:3: TE ==> THE, BE, WE
data/covtobed-1.2.0+dfsg/benchmark/disk/benchmark_threads.md:4: TE ==> THE, BE, WE
data/covtobed-1.2.0+dfsg/benchmark/disk/benchmark_threads.md:5: TE ==> THE, BE, WE
data/covtobed-1.2.0+dfsg/benchmark/disk/benchmark_threads.md:6: TE ==> THE, BE, WE
data/covtobed-1.2.0+dfsg/benchmark/exome_chromosomes/disk_HG00258.REF_chr1.md:3: TE ==> THE, BE, WE
data/covtobed-1.2.0+dfsg/benchmark/exome_chromosomes/disk_HG00258.REF_chr1.md:4: TE ==> THE, BE, WE
data/covtobed-1.2.0+dfsg/benchmark/exome_chromosomes/disk_HG00258.REF_chr1.md:5: TE ==> THE, BE, WE
data/covtobed-1.2.0+dfsg/benchmark/exome_chromosomes/disk_HG00258.REF_chr1.md:6: TE ==> THE, BE, WE
data/covtobed-1.2.0+dfsg/benchmark/exome_chromosomes/disk_HG00258.REF_chr10.md:3: TE ==> THE, BE, WE
data/covtobed-1.2.0+dfsg/benchmark/exome_chromosomes/disk_HG00258.REF_chr10.md:4: TE ==> THE, BE, WE
data/covtobed-1.2.0+dfsg/benchmark/exome_chromosomes/disk_HG00258.REF_chr10.md:5: TE ==> THE, BE, WE
data/covtobed-1.2.0+dfsg/benchmark/exome_chromosomes/disk_HG00258.REF_chr10.md:6: TE ==> THE, BE, WE
data/covtobed-1.2.0+dfsg/benchmark/exome_chromosomes/disk_HG00258.REF_chr11.md:3: TE ==> THE, BE, WE
data/covtobed-1.2.0+dfsg/benchmark/exome_chromosomes/disk_HG00258.REF_chr11.md:4: TE ==> THE, BE, WE
data/covtobed-1.2.0+dfsg/benchmark/exome_chromosomes/disk_HG00258.REF_chr11.md:5: TE ==> THE, BE, WE
data/covtobed-1.2.0+dfsg/benchmark/exome_chromosomes/disk_HG00258.REF_chr11.md:6: TE ==> THE, BE, WE
data/covtobed-1.2.0+dfsg/benchmark/exome_chromosomes/disk_HG00258.REF_chr12.md:3: TE ==> THE, BE, WE
data/covtobed-1.2.0+dfsg/benchmark/exome_chromosomes/disk_HG00258.REF_chr12.md:4: TE ==> THE, BE, WE
data/covtobed-1.2.0+dfsg/benchmark/exome_chromosomes/disk_HG00258.REF_chr12.md:5: TE ==> THE, BE, WE
data/covtobed-1.2.0+dfsg/benchmark/exome_chromosomes/disk_HG00258.REF_chr12.md:6: TE ==> THE, BE, WE
data/covtobed-1.2.0+dfsg/benchmark/exome_chromosomes/disk_HG00258.REF_chr13.md:3: TE ==> THE, BE, WE
data/covtobed-1.2.0+dfsg/benchmark/exome_chromosomes/disk_HG00258.REF_chr13.md:4: TE ==> THE, BE, WE
data/covtobed-1.2.0+dfsg/benchmark/exome_chromosomes/disk_HG00258.REF_chr13.md:5: TE ==> THE, BE, WE
data/covtobed-1.2.0+dfsg/benchmark/exome_chromosomes/disk_HG00258.REF_chr13.md:6: TE ==> THE, BE, WE
data/covtobed-1.2.0+dfsg/benchmark/exome_chromosomes/disk_HG00258.REF_chr14.md:3: TE ==> THE, BE, WE
data/covtobed-1.2.0+dfsg/benchmark/exome_chromosomes/disk_HG00258.REF_chr14.md:4: TE ==> THE, BE, WE
data/covtobed-1.2.0+dfsg/benchmark/exome_chromosomes/disk_HG00258.REF_chr14.md:5: TE ==> THE, BE, WE
data/covtobed-1.2.0+dfsg/benchmark/exome_chromosomes/disk_HG00258.REF_chr14.md:6: TE ==> THE, BE, WE
data/covtobed-1.2.0+dfsg/benchmark/exome_chromosomes/disk_HG00258.REF_chr15.md:3: TE ==> THE, BE, WE
data/covtobed-1.2.0+dfsg/benchmark/exome_chromosomes/disk_HG00258.REF_chr15.md:4: TE ==> THE, BE, WE
data/covtobed-1.2.0+dfsg/benchmark/exome_chromosomes/disk_HG00258.REF_chr15.md:5: TE ==> THE, BE, WE
data/covtobed-1.2.0+dfsg/benchmark/exome_chromosomes/disk_HG00258.REF_chr15.md:6: TE ==> THE, BE, WE
data/covtobed-1.2.0+dfsg/benchmark/exome_chromosomes/disk_HG00258.REF_chr16.md:3: TE ==> THE, BE, WE
data/covtobed-1.2.0+dfsg/benchmark/exome_chromosomes/disk_HG00258.REF_chr16.md:4: TE ==> THE, BE, WE
data/covtobed-1.2.0+dfsg/benchmark/exome_chromosomes/disk_HG00258.REF_chr16.md:5: TE ==> THE, BE, WE
data/covtobed-1.2.0+dfsg/benchmark/exome_chromosomes/disk_HG00258.REF_chr16.md:6: TE ==> THE, BE, WE
data/covtobed-1.2.0+dfsg/benchmark/exome_chromosomes/disk_HG00258.REF_chr17.md:3: TE ==> THE, BE, WE
data/covtobed-1.2.0+dfsg/benchmark/exome_chromosomes/disk_HG00258.REF_chr17.md:4: TE ==> THE, BE, WE
data/covtobed-1.2.0+dfsg/benchmark/exome_chromosomes/disk_HG00258.REF_chr17.md:5: TE ==> THE, BE, WE
data/covtobed-1.2.0+dfsg/benchmark/exome_chromosomes/disk_HG00258.REF_chr17.md:6: TE ==> THE, BE, WE
data/covtobed-1.2.0+dfsg/benchmark/exome_chromosomes/disk_HG00258.REF_chr18.md:3: TE ==> THE, BE, WE
data/covtobed-1.2.0+dfsg/benchmark/exome_chromosomes/disk_HG00258.REF_chr18.md:4: TE ==> THE, BE, WE
data/covtobed-1.2.0+dfsg/benchmark/exome_chromosomes/disk_HG00258.REF_chr18.md:5: TE ==> THE, BE, WE
data/covtobed-1.2.0+dfsg/benchmark/exome_chromosomes/disk_HG00258.REF_chr18.md:6: TE ==> THE, BE, WE
data/covtobed-1.2.0+dfsg/benchmark/exome_chromosomes/disk_HG00258.REF_chr19.md:3: TE ==> THE, BE, WE
data/covtobed-1.2.0+dfsg/benchmark/exome_chromosomes/disk_HG00258.REF_chr19.md:4: TE ==> THE, BE, WE
data/covtobed-1.2.0+dfsg/benchmark/exome_chromosomes/disk_HG00258.REF_chr19.md:5: TE ==> THE, BE, WE
data/covtobed-1.2.0+dfsg/benchmark/exome_chromosomes/disk_HG00258.REF_chr19.md:6: TE ==> THE, BE, WE
data/covtobed-1.2.0+dfsg/benchmark/exome_chromosomes/disk_HG00258.REF_chr2.md:3: TE ==> THE, BE, WE
data/covtobed-1.2.0+dfsg/benchmark/exome_chromosomes/disk_HG00258.REF_chr2.md:4: TE ==> THE, BE, WE
data/covtobed-1.2.0+dfsg/benchmark/exome_chromosomes/disk_HG00258.REF_chr2.md:5: TE ==> THE, BE, WE
data/covtobed-1.2.0+dfsg/benchmark/exome_chromosomes/disk_HG00258.REF_chr2.md:6: TE ==> THE, BE, WE
data/covtobed-1.2.0+dfsg/benchmark/exome_chromosomes/disk_HG00258.REF_chr20.md:3: TE ==> THE, BE, WE
data/covtobed-1.2.0+dfsg/benchmark/exome_chromosomes/disk_HG00258.REF_chr20.md:4: TE ==> THE, BE, WE
data/covtobed-1.2.0+dfsg/benchmark/exome_chromosomes/disk_HG00258.REF_chr20.md:5: TE ==> THE, BE, WE
data/covtobed-1.2.0+dfsg/benchmark/exome_chromosomes/disk_HG00258.REF_chr20.md:6: TE ==> THE, BE, WE
data/covtobed-1.2.0+dfsg/benchmark/exome_chromosomes/disk_HG00258.REF_chr21.md:3: TE ==> THE, BE, WE
data/covtobed-1.2.0+dfsg/benchmark/exome_chromosomes/disk_HG00258.REF_chr21.md:4: TE ==> THE, BE, WE
data/covtobed-1.2.0+dfsg/benchmark/exome_chromosomes/disk_HG00258.REF_chr21.md:5: TE ==> THE, BE, WE
data/covtobed-1.2.0+dfsg/benchmark/exome_chromosomes/disk_HG00258.REF_chr21.md:6: TE ==> THE, BE, WE
data/covtobed-1.2.0+dfsg/benchmark/exome_chromosomes/disk_HG00258.REF_chr22.md:3: TE ==> THE, BE, WE
data/covtobed-1.2.0+dfsg/benchmark/exome_chromosomes/disk_HG00258.REF_chr22.md:4: TE ==> THE, BE, WE
data/covtobed-1.2.0+dfsg/benchmark/exome_chromosomes/disk_HG00258.REF_chr22.md:5: TE ==> THE, BE, WE
data/covtobed-1.2.0+dfsg/benchmark/exome_chromosomes/disk_HG00258.REF_chr22.md:6: TE ==> THE, BE, WE
data/covtobed-1.2.0+dfsg/benchmark/exome_chromosomes/disk_HG00258.REF_chr3.md:3: TE ==> THE, BE, WE
data/covtobed-1.2.0+dfsg/benchmark/exome_chromosomes/disk_HG00258.REF_chr3.md:4: TE ==> THE, BE, WE
data/covtobed-1.2.0+dfsg/benchmark/exome_chromosomes/disk_HG00258.REF_chr3.md:5: TE ==> THE, BE, WE
data/covtobed-1.2.0+dfsg/benchmark/exome_chromosomes/disk_HG00258.REF_chr3.md:6: TE ==> THE, BE, WE
data/covtobed-1.2.0+dfsg/benchmark/exome_chromosomes/disk_HG00258.REF_chr4.md:3: TE ==> THE, BE, WE
data/covtobed-1.2.0+dfsg/benchmark/exome_chromosomes/disk_HG00258.REF_chr4.md:4: TE ==> THE, BE, WE
data/covtobed-1.2.0+dfsg/benchmark/exome_chromosomes/disk_HG00258.REF_chr4.md:5: TE ==> THE, BE, WE
data/covtobed-1.2.0+dfsg/benchmark/exome_chromosomes/disk_HG00258.REF_chr4.md:6: TE ==> THE, BE, WE
data/covtobed-1.2.0+dfsg/benchmark/exome_chromosomes/disk_HG00258.REF_chr5.md:3: TE ==> THE, BE, WE
data/covtobed-1.2.0+dfsg/benchmark/exome_chromosomes/disk_HG00258.REF_chr5.md:4: TE ==> THE, BE, WE
data/covtobed-1.2.0+dfsg/benchmark/exome_chromosomes/disk_HG00258.REF_chr5.md:5: TE ==> THE, BE, WE
data/covtobed-1.2.0+dfsg/benchmark/exome_chromosomes/disk_HG00258.REF_chr5.md:6: TE ==> THE, BE, WE
data/covtobed-1.2.0+dfsg/benchmark/exome_chromosomes/disk_HG00258.REF_chr6.md:3: TE ==> THE, BE, WE
data/covtobed-1.2.0+dfsg/benchmark/exome_chromosomes/disk_HG00258.REF_chr6.md:4: TE ==> THE, BE, WE
data/covtobed-1.2.0+dfsg/benchmark/exome_chromosomes/disk_HG00258.REF_chr6.md:5: TE ==> THE, BE, WE
data/covtobed-1.2.0+dfsg/benchmark/exome_chromosomes/disk_HG00258.REF_chr6.md:6: TE ==> THE, BE, WE
data/covtobed-1.2.0+dfsg/benchmark/exome_chromosomes/disk_HG00258.REF_chr7.md:3: TE ==> THE, BE, WE
data/covtobed-1.2.0+dfsg/benchmark/exome_chromosomes/disk_HG00258.REF_chr7.md:4: TE ==> THE, BE, WE
data/covtobed-1.2.0+dfsg/benchmark/exome_chromosomes/disk_HG00258.REF_chr7.md:5: TE ==> THE, BE, WE
data/covtobed-1.2.0+dfsg/benchmark/exome_chromosomes/disk_HG00258.REF_chr7.md:6: TE ==> THE, BE, WE
data/covtobed-1.2.0+dfsg/benchmark/exome_chromosomes/disk_HG00258.REF_chr8.md:3: TE ==> THE, BE, WE
data/covtobed-1.2.0+dfsg/benchmark/exome_chromosomes/disk_HG00258.REF_chr8.md:4: TE ==> THE, BE, WE
data/covtobed-1.2.0+dfsg/benchmark/exome_chromosomes/disk_HG00258.REF_chr8.md:5: TE ==> THE, BE, WE
data/covtobed-1.2.0+dfsg/benchmark/exome_chromosomes/disk_HG00258.REF_chr8.md:6: TE ==> THE, BE, WE
data/covtobed-1.2.0+dfsg/benchmark/exome_chromosomes/disk_HG00258.REF_chr9.md:3: TE ==> THE, BE, WE
data/covtobed-1.2.0+dfsg/benchmark/exome_chromosomes/disk_HG00258.REF_chr9.md:4: TE ==> THE, BE, WE
data/covtobed-1.2.0+dfsg/benchmark/exome_chromosomes/disk_HG00258.REF_chr9.md:5: TE ==> THE, BE, WE
data/covtobed-1.2.0+dfsg/benchmark/exome_chromosomes/disk_HG00258.REF_chr9.md:6: TE ==> THE, BE, WE
data/covtobed-1.2.0+dfsg/benchmark/exome_chromosomes/disk_HG00258.REF_chrEBV.md:3: TE ==> THE, BE, WE
data/covtobed-1.2.0+dfsg/benchmark/exome_chromosomes/disk_HG00258.REF_chrEBV.md:4: TE ==> THE, BE, WE
data/covtobed-1.2.0+dfsg/benchmark/exome_chromosomes/disk_HG00258.REF_chrEBV.md:5: TE ==> THE, BE, WE
data/covtobed-1.2.0+dfsg/benchmark/exome_chromosomes/disk_HG00258.REF_chrEBV.md:6: TE ==> THE, BE, WE
data/covtobed-1.2.0+dfsg/benchmark/exome_chromosomes/disk_HG00258.REF_chrM.md:3: TE ==> THE, BE, WE
data/covtobed-1.2.0+dfsg/benchmark/exome_chromosomes/disk_HG00258.REF_chrM.md:4: TE ==> THE, BE, WE
data/covtobed-1.2.0+dfsg/benchmark/exome_chromosomes/disk_HG00258.REF_chrM.md:5: TE ==> THE, BE, WE
data/covtobed-1.2.0+dfsg/benchmark/exome_chromosomes/disk_HG00258.REF_chrM.md:6: TE ==> THE, BE, WE
data/covtobed-1.2.0+dfsg/benchmark/exome_chromosomes/disk_HG00258.REF_chrX.md:3: TE ==> THE, BE, WE
data/covtobed-1.2.0+dfsg/benchmark/exome_chromosomes/disk_HG00258.REF_chrX.md:4: TE ==> THE, BE, WE
data/covtobed-1.2.0+dfsg/benchmark/exome_chromosomes/disk_HG00258.REF_chrX.md:5: TE ==> THE, BE, WE
data/covtobed-1.2.0+dfsg/benchmark/exome_chromosomes/disk_HG00258.REF_chrX.md:6: TE ==> THE, BE, WE
data/covtobed-1.2.0+dfsg/benchmark/exome_chromosomes/disk_HG00258.REF_chrY.md:3: TE ==> THE, BE, WE
data/covtobed-1.2.0+dfsg/benchmark/exome_chromosomes/disk_HG00258.REF_chrY.md:4: TE ==> THE, BE, WE
data/covtobed-1.2.0+dfsg/benchmark/exome_chromosomes/disk_HG00258.REF_chrY.md:5: TE ==> THE, BE, WE
data/covtobed-1.2.0+dfsg/benchmark/exome_chromosomes/disk_HG00258.REF_chrY.md:6: TE ==> THE, BE, WE
data/covtobed-1.2.0+dfsg/benchmark/exome_chromosomes/disk_HG00258.REF_unmapped.md:3: TE ==> THE, BE, WE
data/covtobed-1.2.0+dfsg/benchmark/exome_chromosomes/disk_HG00258.REF_unmapped.md:4: TE ==> THE, BE, WE
data/covtobed-1.2.0+dfsg/benchmark/exome_chromosomes/disk_HG00258.REF_unmapped.md:5: TE ==> THE, BE, WE
data/covtobed-1.2.0+dfsg/benchmark/exome_chromosomes/disk_HG00258.REF_unmapped.md:6: TE ==> THE, BE, WE
data/covtobed-1.2.0+dfsg/benchmark/exome_size/disk_chr1.1000k.md:3: TE ==> THE, BE, WE
data/covtobed-1.2.0+dfsg/benchmark/exome_size/disk_chr1.1000k.md:4: TE ==> THE, BE, WE
data/covtobed-1.2.0+dfsg/benchmark/exome_size/disk_chr1.1000k.md:5: TE ==> THE, BE, WE
data/covtobed-1.2.0+dfsg/benchmark/exome_size/disk_chr1.1000k.md:6: TE ==> THE, BE, WE
data/covtobed-1.2.0+dfsg/benchmark/exome_size/disk_chr1.100k.md:3: TE ==> THE, BE, WE
data/covtobed-1.2.0+dfsg/benchmark/exome_size/disk_chr1.100k.md:4: TE ==> THE, BE, WE
data/covtobed-1.2.0+dfsg/benchmark/exome_size/disk_chr1.100k.md:5: TE ==> THE, BE, WE
data/covtobed-1.2.0+dfsg/benchmark/exome_size/disk_chr1.100k.md:6: TE ==> THE, BE, WE
data/covtobed-1.2.0+dfsg/benchmark/exome_size/disk_chr1.10M.md:3: TE ==> THE, BE, WE
data/covtobed-1.2.0+dfsg/benchmark/exome_size/disk_chr1.10M.md:4: TE ==> THE, BE, WE
data/covtobed-1.2.0+dfsg/benchmark/exome_size/disk_chr1.10M.md:5: TE ==> THE, BE, WE
data/covtobed-1.2.0+dfsg/benchmark/exome_size/disk_chr1.10M.md:6: TE ==> THE, BE, WE
data/covtobed-1.2.0+dfsg/benchmark/exome_size/disk_chr1.150M.md:3: TE ==> THE, BE, WE
data/covtobed-1.2.0+dfsg/benchmark/exome_size/disk_chr1.150M.md:4: TE ==> THE, BE, WE
data/covtobed-1.2.0+dfsg/benchmark/exome_size/disk_chr1.150M.md:5: TE ==> THE, BE, WE
data/covtobed-1.2.0+dfsg/benchmark/exome_size/disk_chr1.150M.md:6: TE ==> THE, BE, WE
data/covtobed-1.2.0+dfsg/benchmark/exome_size/disk_chr1.2000k.md:3: TE ==> THE, BE, WE
data/covtobed-1.2.0+dfsg/benchmark/exome_size/disk_chr1.2000k.md:4: TE ==> THE, BE, WE
data/covtobed-1.2.0+dfsg/benchmark/exome_size/disk_chr1.2000k.md:5: TE ==> THE, BE, WE
data/covtobed-1.2.0+dfsg/benchmark/exome_size/disk_chr1.2000k.md:6: TE ==> THE, BE, WE
data/covtobed-1.2.0+dfsg/benchmark/exome_size/disk_chr1.200k.md:3: TE ==> THE, BE, WE
data/covtobed-1.2.0+dfsg/benchmark/exome_size/disk_chr1.200k.md:4: TE ==> THE, BE, WE
data/covtobed-1.2.0+dfsg/benchmark/exome_size/disk_chr1.200k.md:5: TE ==> THE, BE, WE
data/covtobed-1.2.0+dfsg/benchmark/exome_size/disk_chr1.200k.md:6: TE ==> THE, BE, WE
data/covtobed-1.2.0+dfsg/benchmark/exome_size/disk_chr1.5000k.md:3: TE ==> THE, BE, WE
data/covtobed-1.2.0+dfsg/benchmark/exome_size/disk_chr1.5000k.md:4: TE ==> THE, BE, WE
data/covtobed-1.2.0+dfsg/benchmark/exome_size/disk_chr1.5000k.md:5: TE ==> THE, BE, WE
data/covtobed-1.2.0+dfsg/benchmark/exome_size/disk_chr1.5000k.md:6: TE ==> THE, BE, WE
data/covtobed-1.2.0+dfsg/benchmark/exome_size/disk_chr1.500k.md:3: TE ==> THE, BE, WE
data/covtobed-1.2.0+dfsg/benchmark/exome_size/disk_chr1.500k.md:4: TE ==> THE, BE, WE
data/covtobed-1.2.0+dfsg/benchmark/exome_size/disk_chr1.500k.md:5: TE ==> THE, BE, WE
data/covtobed-1.2.0+dfsg/benchmark/exome_size/disk_chr1.500k.md:6: TE ==> THE, BE, WE
data/covtobed-1.2.0+dfsg/benchmark/exome_size/disk_chr1.50M.md:3: TE ==> THE, BE, WE
data/covtobed-1.2.0+dfsg/benchmark/exome_size/disk_chr1.50M.md:4: TE ==> THE, BE, WE
data/covtobed-1.2.0+dfsg/benchmark/exome_size/disk_chr1.50M.md:5: TE ==> THE, BE, WE
data/covtobed-1.2.0+dfsg/benchmark/exome_size/disk_chr1.50M.md:6: TE ==> THE, BE, WE
data/covtobed-1.2.0+dfsg/benchmark/exome_size/disk_chr1.md:3: TE ==> THE, BE, WE
data/covtobed-1.2.0+dfsg/benchmark/exome_size/disk_chr1.md:4: TE ==> THE, BE, WE
data/covtobed-1.2.0+dfsg/benchmark/exome_size/disk_chr1.md:5: TE ==> THE, BE, WE
data/covtobed-1.2.0+dfsg/benchmark/exome_size/disk_chr1.md:6: TE ==> THE, BE, WE
data/covtobed-1.2.0+dfsg/benchmark/stream/README.md:2: Straming ==> Streaming, steaming
data/covtobed-1.2.0+dfsg/benchmark/stream/benchmarkStream_example1.csv:2: TE ==> THE, BE, WE
data/covtobed-1.2.0+dfsg/benchmark/stream/benchmarkStream_example1.csv:3: TE ==> THE, BE, WE
data/covtobed-1.2.0+dfsg/benchmark/stream/benchmarkStream_example1.md:3: TE ==> THE, BE, WE
data/covtobed-1.2.0+dfsg/benchmark/stream/benchmarkStream_example1.md:4: TE ==> THE, BE, WE
data/covtobed-1.2.0+dfsg/benchmark/stream/benchmarkStream_example1.md:5: TE ==> THE, BE, WE
data/covtobed-1.2.0+dfsg/benchmark/stream/benchmarkStream_example1.md:6: TE ==> THE, BE, WE
data/covtobed-1.2.0+dfsg/benchmark/stream/benchmarkStream_example2.csv:2: TE ==> THE, BE, WE
data/covtobed-1.2.0+dfsg/benchmark/stream/benchmarkStream_example2.csv:3: TE ==> THE, BE, WE
data/covtobed-1.2.0+dfsg/benchmark/stream/benchmarkStream_example2.md:3: TE ==> THE, BE, WE
data/covtobed-1.2.0+dfsg/benchmark/stream/benchmarkStream_example2.md:4: TE ==> THE, BE, WE
data/covtobed-1.2.0+dfsg/benchmark/stream/benchmarkStream_example2.md:5: TE ==> THE, BE, WE
data/covtobed-1.2.0+dfsg/benchmark/stream/benchmarkStream_example2.md:6: TE ==> THE, BE, WE
data/covtobed-1.2.0+dfsg/benchmark/stream/benchmark_example1.csv:2: TE ==> THE, BE, WE
data/covtobed-1.2.0+dfsg/benchmark/stream/benchmark_example1.csv:3: TE ==> THE, BE, WE
data/covtobed-1.2.0+dfsg/benchmark/stream/benchmark_example1.csv:4: TE ==> THE, BE, WE
data/covtobed-1.2.0+dfsg/benchmark/stream/benchmark_example1.md:3: TE ==> THE, BE, WE
data/covtobed-1.2.0+dfsg/benchmark/stream/benchmark_example1.md:4: TE ==> THE, BE, WE
data/covtobed-1.2.0+dfsg/benchmark/stream/benchmark_example1.md:5: TE ==> THE, BE, WE
data/covtobed-1.2.0+dfsg/paper/paper.bib:54: Ponting ==> Pointing
data/covtobed-1.2.0+dfsg/test/README.md:5: continuosly ==> continuously
data/covtobed-1.2.0+dfsg/debian/patches/test_use_system_installed_binary.patch:20: tring ==> trying, string, ring
data/covtobed-1.2.0+dfsg/.pc/test_use_system_installed_binary.patch/test/test.sh:19: tring ==> trying, string, ring