data/drop-seq-2.4.0+dfsg/src/ant/defs.xml:34: testng ==> testing
data/drop-seq-2.4.0+dfsg/src/ant/defs.xml:65: testng ==> testing
data/drop-seq-2.4.0+dfsg/src/ant/defs.xml:67: testng ==> testing
data/drop-seq-2.4.0+dfsg/src/ant/defs.xml:77: testng ==> testing
data/drop-seq-2.4.0+dfsg/src/ant/defs.xml:88: testng ==> testing
data/drop-seq-2.4.0+dfsg/src/ant/defs.xml:90: testng ==> testing
data/drop-seq-2.4.0+dfsg/src/ant/defs.xml:100: testng ==> testing
data/drop-seq-2.4.0+dfsg/src/ant/defs.xml:134: testng ==> testing
data/drop-seq-2.4.0+dfsg/src/ant/defs.xml:137: testng ==> testing
data/drop-seq-2.4.0+dfsg/src/ant/defs.xml:139: testng ==> testing
data/drop-seq-2.4.0+dfsg/src/ant/defs.xml:148: testng ==> testing
data/drop-seq-2.4.0+dfsg/src/java/org/broadinstitute/dropseqrna/annotation/GatherGeneGCLength.java:72: containg ==> containing
data/drop-seq-2.4.0+dfsg/src/java/org/broadinstitute/dropseqrna/annotation/GatherGeneGCLength.java:75: containg ==> containing
data/drop-seq-2.4.0+dfsg/src/java/org/broadinstitute/dropseqrna/annotation/ReduceGtf.java:52: simplier ==> simpler
data/drop-seq-2.4.0+dfsg/src/java/org/broadinstitute/dropseqrna/annotation/ReduceGtf.java:58: simplier ==> simpler
data/drop-seq-2.4.0+dfsg/src/java/org/broadinstitute/dropseqrna/barnyard/DGECommandLineBase.java:54: minumum ==> minimum
data/drop-seq-2.4.0+dfsg/src/java/org/broadinstitute/dropseqrna/barnyard/DGECommandLineBase.java:57: minumum ==> minimum
data/drop-seq-2.4.0+dfsg/src/java/org/broadinstitute/dropseqrna/barnyard/DigitalExpression.java:69: precidence ==> precedence
data/drop-seq-2.4.0+dfsg/src/java/org/broadinstitute/dropseqrna/barnyard/GatherMolecularBarcodeDistributionByGene.java:55: precidence ==> precedence
data/drop-seq-2.4.0+dfsg/src/java/org/broadinstitute/dropseqrna/barnyard/SingleCellRnaSeqMetricsCollector.java:102: compatability ==> compatibility
data/drop-seq-2.4.0+dfsg/src/java/org/broadinstitute/dropseqrna/barnyard/digitalallelecounts/LikelihoodUtils.java:223: equivilent ==> equivalent
data/drop-seq-2.4.0+dfsg/src/java/org/broadinstitute/dropseqrna/barnyard/digitalexpression/DgeHeaderCodec.java:253: neccessary ==> necessary
data/drop-seq-2.4.0+dfsg/src/java/org/broadinstitute/dropseqrna/beadsynthesis/DetectBeadSynthesisErrors.java:108: incorperated ==> incorporated
data/drop-seq-2.4.0+dfsg/src/java/org/broadinstitute/dropseqrna/beadsynthesis/DetectBeadSynthesisErrors.java:110: subsitution ==> substitution
data/drop-seq-2.4.0+dfsg/src/java/org/broadinstitute/dropseqrna/censusseq/CensusSeq.java:115: evalutate ==> evaluate
data/drop-seq-2.4.0+dfsg/src/java/org/broadinstitute/dropseqrna/censusseq/CsiAnalysis.java:128: evalutate ==> evaluate
data/drop-seq-2.4.0+dfsg/src/java/org/broadinstitute/dropseqrna/censusseq/CsiAnalysis.java:274: Evaluted ==> Evaluated
data/drop-seq-2.4.0+dfsg/src/java/org/broadinstitute/dropseqrna/censusseq/OptimizeSampleRatiosGradientFunction.java:94: ilegal ==> illegal
data/drop-seq-2.4.0+dfsg/src/java/org/broadinstitute/dropseqrna/censusseq/RollCall.java:86: evalutate ==> evaluate
data/drop-seq-2.4.0+dfsg/src/java/org/broadinstitute/dropseqrna/metrics/TagReadWithGeneExonFunction.java:82: seperated ==> separated
data/drop-seq-2.4.0+dfsg/src/java/org/broadinstitute/dropseqrna/metrics/TagReadWithGeneExonFunction.java:85: seperated ==> separated
data/drop-seq-2.4.0+dfsg/src/java/org/broadinstitute/dropseqrna/metrics/TagReadWithGeneFunction.java:67: seperated ==> separated
data/drop-seq-2.4.0+dfsg/src/java/org/broadinstitute/dropseqrna/metrics/TagReadWithGeneFunction.java:70: seperated ==> separated
data/drop-seq-2.4.0+dfsg/src/java/org/broadinstitute/dropseqrna/metrics/TagReadWithGeneFunction.java:227: inbetween ==> between, in between
data/drop-seq-2.4.0+dfsg/src/java/org/broadinstitute/dropseqrna/metrics/TagReadWithInterval.java:63: seperated ==> separated
data/drop-seq-2.4.0+dfsg/src/java/org/broadinstitute/dropseqrna/readtrimming/SimplePolyAFinder.java:123: postion ==> position
data/drop-seq-2.4.0+dfsg/src/java/org/broadinstitute/dropseqrna/readtrimming/TrimStartingSequence.java:61: begining ==> beginning
data/drop-seq-2.4.0+dfsg/src/java/org/broadinstitute/dropseqrna/spermseq/metrics/duplicates/SpermSeqMarkDuplicates.java:77: whcih ==> which
data/drop-seq-2.4.0+dfsg/src/java/org/broadinstitute/dropseqrna/spermseq/metrics/duplicates/SpermSeqMarkDuplicates.java:150: markes ==> marks, marked, markers
data/drop-seq-2.4.0+dfsg/src/java/org/broadinstitute/dropseqrna/spermseq/metrics/spermalleles/GenotypeSperm.java:51: seperated ==> separated
data/drop-seq-2.4.0+dfsg/src/java/org/broadinstitute/dropseqrna/utils/ConvertTagToReadGroup.java:72: concatonated ==> concatenated
data/drop-seq-2.4.0+dfsg/src/java/org/broadinstitute/dropseqrna/utils/DownsampleBamByTag.java:86: seperated ==> separated
data/drop-seq-2.4.0+dfsg/src/java/org/broadinstitute/dropseqrna/utils/DownsampleBamByTag.java:311: toi ==> to, toy
data/drop-seq-2.4.0+dfsg/src/java/org/broadinstitute/dropseqrna/utils/DownsampleBamByTag.java:314: toi ==> to, toy
data/drop-seq-2.4.0+dfsg/src/java/org/broadinstitute/dropseqrna/utils/DownsampleBamByTag.java:329: toi ==> to, toy
data/drop-seq-2.4.0+dfsg/src/java/org/broadinstitute/dropseqrna/utils/DownsampleBamByTag.java:330: toi ==> to, toy
data/drop-seq-2.4.0+dfsg/src/java/org/broadinstitute/dropseqrna/utils/DownsampleBamByTag.java:333: toi ==> to, toy
data/drop-seq-2.4.0+dfsg/src/java/org/broadinstitute/dropseqrna/utils/DownsampleBamByTag.java:353: toi ==> to, toy
data/drop-seq-2.4.0+dfsg/src/java/org/broadinstitute/dropseqrna/utils/DownsampleBamByTag.java:362: toi ==> to, toy
data/drop-seq-2.4.0+dfsg/src/java/org/broadinstitute/dropseqrna/utils/SequenceDictionaryIntersection.java:164: interesection ==> intersection
data/drop-seq-2.4.0+dfsg/src/java/org/broadinstitute/dropseqrna/utils/TagBamWithReadSequenceExtended.java:59: seperated ==> separated
data/drop-seq-2.4.0+dfsg/src/java/org/broadinstitute/dropseqrna/utils/TagBamWithReadSequenceExtended.java:59: seperating ==> separating
data/drop-seq-2.4.0+dfsg/src/java/org/broadinstitute/dropseqrna/utils/VCFUtils.java:30: te ==> the, be, we
data/drop-seq-2.4.0+dfsg/src/java/org/broadinstitute/dropseqrna/utils/editdistance/CollapseBarcodesInPlace.java:92: signficantly ==> significantly
data/drop-seq-2.4.0+dfsg/src/java/org/broadinstitute/dropseqrna/utils/editdistance/CollapseTagWithContext.java:79: equivilent ==> equivalent
data/drop-seq-2.4.0+dfsg/src/java/org/broadinstitute/dropseqrna/utils/editdistance/CollapseTagWithContext.java:122: minumum ==> minimum
data/drop-seq-2.4.0+dfsg/src/java/org/broadinstitute/dropseqrna/utils/editdistance/CollapseTagWithContext.java:127: emiited ==> emitted
data/drop-seq-2.4.0+dfsg/src/java/org/broadinstitute/dropseqrna/utils/editdistance/CollapseTagWithContext.java:134: mergable ==> mergeable
data/drop-seq-2.4.0+dfsg/src/java/org/broadinstitute/dropseqrna/utils/editdistance/CollapseTagWithContext.java:149: maximium ==> maximum
data/drop-seq-2.4.0+dfsg/src/java/org/broadinstitute/dropseqrna/utils/editdistance/CollapseTagWithContext.java:189: specifiy ==> specify
data/drop-seq-2.4.0+dfsg/src/java/org/broadinstitute/dropseqrna/utils/editdistance/CollapseTagWithContext.java:234: neccesary ==> necessary
data/drop-seq-2.4.0+dfsg/src/java/org/broadinstitute/dropseqrna/utils/editdistance/EDUtils.java:87: seperated ==> separated
data/drop-seq-2.4.0+dfsg/src/java/org/broadinstitute/dropseqrna/utils/editdistance/MapBarcodesByEditDistance.java:559: entitiy ==> entity
data/drop-seq-2.4.0+dfsg/src/java/org/broadinstitute/dropseqrna/utils/referencetools/MaskReferenceSequence.java:63: seperated ==> separated
data/drop-seq-2.4.0+dfsg/src/scripts/create_Drop-seq_reference_metadata.sh:151: sucessfully ==> successfully
data/drop-seq-2.4.0+dfsg/src/tests/java/org/broadinstitute/dropseqrna/annotation/AnnotationUtilsTest.java:12: testng ==> testing
data/drop-seq-2.4.0+dfsg/src/tests/java/org/broadinstitute/dropseqrna/annotation/AnnotationUtilsTest.java:13: testng ==> testing
data/drop-seq-2.4.0+dfsg/src/tests/java/org/broadinstitute/dropseqrna/annotation/ConvertToRefFlatTest.java:27: testng ==> testing
data/drop-seq-2.4.0+dfsg/src/tests/java/org/broadinstitute/dropseqrna/annotation/ConvertToRefFlatTest.java:28: testng ==> testing
data/drop-seq-2.4.0+dfsg/src/tests/java/org/broadinstitute/dropseqrna/annotation/CreateIntervalsFilesTest.java:29: testng ==> testing
data/drop-seq-2.4.0+dfsg/src/tests/java/org/broadinstitute/dropseqrna/annotation/CreateIntervalsFilesTest.java:30: testng ==> testing
data/drop-seq-2.4.0+dfsg/src/tests/java/org/broadinstitute/dropseqrna/annotation/EnhanceGTFRecordsTest.java:29: testng ==> testing
data/drop-seq-2.4.0+dfsg/src/tests/java/org/broadinstitute/dropseqrna/annotation/EnhanceGTFRecordsTest.java:30: testng ==> testing
data/drop-seq-2.4.0+dfsg/src/tests/java/org/broadinstitute/dropseqrna/annotation/FilterGtfTest.java:28: testng ==> testing
data/drop-seq-2.4.0+dfsg/src/tests/java/org/broadinstitute/dropseqrna/annotation/FilterGtfTest.java:29: testng ==> testing
data/drop-seq-2.4.0+dfsg/src/tests/java/org/broadinstitute/dropseqrna/annotation/FilterGtfTest.java:30: testng ==> testing
data/drop-seq-2.4.0+dfsg/src/tests/java/org/broadinstitute/dropseqrna/annotation/FindGQuadruplexTest.java:27: testng ==> testing
data/drop-seq-2.4.0+dfsg/src/tests/java/org/broadinstitute/dropseqrna/annotation/GQuadruplexTest.java:6: testng ==> testing
data/drop-seq-2.4.0+dfsg/src/tests/java/org/broadinstitute/dropseqrna/annotation/GTFReaderTest.java:27: testng ==> testing
data/drop-seq-2.4.0+dfsg/src/tests/java/org/broadinstitute/dropseqrna/annotation/GTFReaderTest.java:28: testng ==> testing
data/drop-seq-2.4.0+dfsg/src/tests/java/org/broadinstitute/dropseqrna/annotation/GTFRecordTest.java:5: testng ==> testing
data/drop-seq-2.4.0+dfsg/src/tests/java/org/broadinstitute/dropseqrna/annotation/GatherGeneGCLengthTest.java:33: testng ==> testing
data/drop-seq-2.4.0+dfsg/src/tests/java/org/broadinstitute/dropseqrna/annotation/GatherGeneGCLengthTest.java:34: testng ==> testing
data/drop-seq-2.4.0+dfsg/src/tests/java/org/broadinstitute/dropseqrna/annotation/GeneAnnotationReaderTest.java:28: testng ==> testing
data/drop-seq-2.4.0+dfsg/src/tests/java/org/broadinstitute/dropseqrna/annotation/GeneAnnotationReaderTest.java:29: testng ==> testing
data/drop-seq-2.4.0+dfsg/src/tests/java/org/broadinstitute/dropseqrna/annotation/ReduceGtfTest.java:33: testng ==> testing
data/drop-seq-2.4.0+dfsg/src/tests/java/org/broadinstitute/dropseqrna/annotation/ReduceGtfTest.java:34: testng ==> testing
data/drop-seq-2.4.0+dfsg/src/tests/java/org/broadinstitute/dropseqrna/annotation/RefFlatRecordTest.java:3: testng ==> testing
data/drop-seq-2.4.0+dfsg/src/tests/java/org/broadinstitute/dropseqrna/annotation/RefFlatRecordTest.java:4: testng ==> testing
data/drop-seq-2.4.0+dfsg/src/tests/java/org/broadinstitute/dropseqrna/annotation/ValidateReferenceTest.java:28: testng ==> testing
data/drop-seq-2.4.0+dfsg/src/tests/java/org/broadinstitute/dropseqrna/annotation/ValidateReferenceTest.java:29: testng ==> testing
data/drop-seq-2.4.0+dfsg/src/tests/java/org/broadinstitute/dropseqrna/barnyard/BarcodeListRetrievalTest.java:26: testng ==> testing
data/drop-seq-2.4.0+dfsg/src/tests/java/org/broadinstitute/dropseqrna/barnyard/BarcodeListRetrievalTest.java:27: testng ==> testing
data/drop-seq-2.4.0+dfsg/src/tests/java/org/broadinstitute/dropseqrna/barnyard/DigitalExpressionTest.java:41: testng ==> testing
data/drop-seq-2.4.0+dfsg/src/tests/java/org/broadinstitute/dropseqrna/barnyard/DigitalExpressionTest.java:42: testng ==> testing
data/drop-seq-2.4.0+dfsg/src/tests/java/org/broadinstitute/dropseqrna/barnyard/DigitalExpressionTest.java:43: testng ==> testing
data/drop-seq-2.4.0+dfsg/src/tests/java/org/broadinstitute/dropseqrna/barnyard/GatherMolecularBarcodeDistributionByGeneTest.java:7: testng ==> testing
data/drop-seq-2.4.0+dfsg/src/tests/java/org/broadinstitute/dropseqrna/barnyard/GatherMolecularBarcodeDistributionByGeneTest.java:8: testng ==> testing
data/drop-seq-2.4.0+dfsg/src/tests/java/org/broadinstitute/dropseqrna/barnyard/SelectCellsByNumTranscriptsTest.java:5: testng ==> testing
data/drop-seq-2.4.0+dfsg/src/tests/java/org/broadinstitute/dropseqrna/barnyard/SelectCellsByNumTranscriptsTest.java:6: testng ==> testing
data/drop-seq-2.4.0+dfsg/src/tests/java/org/broadinstitute/dropseqrna/barnyard/SingleCellRnaSeqMetricsCollectorTest.java:34: testng ==> testing
data/drop-seq-2.4.0+dfsg/src/tests/java/org/broadinstitute/dropseqrna/barnyard/digitalallelecounts/DigitalAlleleCountsIteratorTest.java:35: testng ==> testing
data/drop-seq-2.4.0+dfsg/src/tests/java/org/broadinstitute/dropseqrna/barnyard/digitalallelecounts/DigitalAlleleCountsTest.java:34: testng ==> testing
data/drop-seq-2.4.0+dfsg/src/tests/java/org/broadinstitute/dropseqrna/barnyard/digitalallelecounts/LikelihoodUtilsTest.java:32: testng ==> testing
data/drop-seq-2.4.0+dfsg/src/tests/java/org/broadinstitute/dropseqrna/barnyard/digitalallelecounts/LikelihoodUtilsTest.java:33: testng ==> testing
data/drop-seq-2.4.0+dfsg/src/tests/java/org/broadinstitute/dropseqrna/barnyard/digitalallelecounts/LikelihoodUtilsTest.java:34: testng ==> testing
data/drop-seq-2.4.0+dfsg/src/tests/java/org/broadinstitute/dropseqrna/barnyard/digitalallelecounts/MultiCellDigitalAlleleCountsIteratorTest.java:36: testng ==> testing
data/drop-seq-2.4.0+dfsg/src/tests/java/org/broadinstitute/dropseqrna/barnyard/digitalallelecounts/MultiCellDigitalAlleleCountsTest.java:36: testng ==> testing
data/drop-seq-2.4.0+dfsg/src/tests/java/org/broadinstitute/dropseqrna/barnyard/digitalallelecounts/MultiCellDigitalAlleleCountsTest.java:37: testng ==> testing
data/drop-seq-2.4.0+dfsg/src/tests/java/org/broadinstitute/dropseqrna/barnyard/digitalallelecounts/SNPUMIBasePileupIteratorTest.java:32: testng ==> testing
data/drop-seq-2.4.0+dfsg/src/tests/java/org/broadinstitute/dropseqrna/barnyard/digitalallelecounts/SNPUMIBasePileupTest.java:33: testng ==> testing
data/drop-seq-2.4.0+dfsg/src/tests/java/org/broadinstitute/dropseqrna/barnyard/digitalallelecounts/SNPUMICellReadIteratorWrapperTest.java:40: testng ==> testing
data/drop-seq-2.4.0+dfsg/src/tests/java/org/broadinstitute/dropseqrna/barnyard/digitalallelecounts/SummarizeUMIBaseQualitiesTest.java:27: testng ==> testing
data/drop-seq-2.4.0+dfsg/src/tests/java/org/broadinstitute/dropseqrna/barnyard/digitalexpression/DgeHeaderCodecTest.java:35: testng ==> testing
data/drop-seq-2.4.0+dfsg/src/tests/java/org/broadinstitute/dropseqrna/barnyard/digitalexpression/DgeHeaderCodecTest.java:36: testng ==> testing
data/drop-seq-2.4.0+dfsg/src/tests/java/org/broadinstitute/dropseqrna/barnyard/digitalexpression/DgeHeaderCodecTest.java:37: testng ==> testing
data/drop-seq-2.4.0+dfsg/src/tests/java/org/broadinstitute/dropseqrna/barnyard/digitalexpression/DgeHeaderMergerTest.java:28: testng ==> testing
data/drop-seq-2.4.0+dfsg/src/tests/java/org/broadinstitute/dropseqrna/barnyard/digitalexpression/DgeHeaderMergerTest.java:29: testng ==> testing
data/drop-seq-2.4.0+dfsg/src/tests/java/org/broadinstitute/dropseqrna/barnyard/digitalexpression/DgeIteratorTest.java:12: testng ==> testing
data/drop-seq-2.4.0+dfsg/src/tests/java/org/broadinstitute/dropseqrna/barnyard/digitalexpression/UMICollectionTest.java:27: testng ==> testing
data/drop-seq-2.4.0+dfsg/src/tests/java/org/broadinstitute/dropseqrna/barnyard/digitalexpression/UMICollectionTest.java:28: testng ==> testing
data/drop-seq-2.4.0+dfsg/src/tests/java/org/broadinstitute/dropseqrna/barnyard/digitalexpression/tools/DGEMatrixTest.java:35: testng ==> testing
data/drop-seq-2.4.0+dfsg/src/tests/java/org/broadinstitute/dropseqrna/barnyard/digitalexpression/tools/MatrixTransformTest.java:27: testng ==> testing
data/drop-seq-2.4.0+dfsg/src/tests/java/org/broadinstitute/dropseqrna/barnyard/digitalexpression/tools/MatrixTransformTest.java:28: testng ==> testing
data/drop-seq-2.4.0+dfsg/src/tests/java/org/broadinstitute/dropseqrna/beadsynthesis/BeadSynthesisErrorDataTest.java:31: testng ==> testing
data/drop-seq-2.4.0+dfsg/src/tests/java/org/broadinstitute/dropseqrna/beadsynthesis/DetectBeadSynthesisErrorsTest.java:37: testng ==> testing
data/drop-seq-2.4.0+dfsg/src/tests/java/org/broadinstitute/dropseqrna/beadsynthesis/DetectPrimerTest.java:26: testng ==> testing
data/drop-seq-2.4.0+dfsg/src/tests/java/org/broadinstitute/dropseqrna/beadsynthesis/DetectPrimerTest.java:27: testng ==> testing
data/drop-seq-2.4.0+dfsg/src/tests/java/org/broadinstitute/dropseqrna/beadsynthesis/IntendedSequenceBuilderTest.java:28: testng ==> testing
data/drop-seq-2.4.0+dfsg/src/tests/java/org/broadinstitute/dropseqrna/beadsynthesis/IntendedSequenceBuilderTest.java:29: testng ==> testing
data/drop-seq-2.4.0+dfsg/src/tests/java/org/broadinstitute/dropseqrna/censusseq/CensusSeqTest.java:8: testng ==> testing
data/drop-seq-2.4.0+dfsg/src/tests/java/org/broadinstitute/dropseqrna/censusseq/CensusSeqTest.java:9: testng ==> testing
data/drop-seq-2.4.0+dfsg/src/tests/java/org/broadinstitute/dropseqrna/censusseq/CommonSNPsDataTest.java:32: testng ==> testing
data/drop-seq-2.4.0+dfsg/src/tests/java/org/broadinstitute/dropseqrna/censusseq/CommonSNPsDataTest.java:33: testng ==> testing
data/drop-seq-2.4.0+dfsg/src/tests/java/org/broadinstitute/dropseqrna/censusseq/CsiAnalysisTest.java:10: testng ==> testing
data/drop-seq-2.4.0+dfsg/src/tests/java/org/broadinstitute/dropseqrna/censusseq/CsiAnalysisTest.java:11: testng ==> testing
data/drop-seq-2.4.0+dfsg/src/tests/java/org/broadinstitute/dropseqrna/censusseq/GenotypeDataBitSetListBackedTest.java:30: testng ==> testing
data/drop-seq-2.4.0+dfsg/src/tests/java/org/broadinstitute/dropseqrna/censusseq/MonomorphicVariantContextFilterTest.java:11: testng ==> testing
data/drop-seq-2.4.0+dfsg/src/tests/java/org/broadinstitute/dropseqrna/censusseq/MonomorphicVariantContextFilterTest.java:12: testng ==> testing
data/drop-seq-2.4.0+dfsg/src/tests/java/org/broadinstitute/dropseqrna/censusseq/OptimizeSampleRatiosCommonSNPsResultTest.java:6: testng ==> testing
data/drop-seq-2.4.0+dfsg/src/tests/java/org/broadinstitute/dropseqrna/censusseq/OptimizeSampleRatiosCommonSNPsTest.java:34: testng ==> testing
data/drop-seq-2.4.0+dfsg/src/tests/java/org/broadinstitute/dropseqrna/censusseq/OptimizeSampleRatiosGradientFunctionTest.java:28: testng ==> testing
data/drop-seq-2.4.0+dfsg/src/tests/java/org/broadinstitute/dropseqrna/censusseq/RollCallTest.java:8: testng ==> testing
data/drop-seq-2.4.0+dfsg/src/tests/java/org/broadinstitute/dropseqrna/censusseq/RollCallTest.java:9: testng ==> testing
data/drop-seq-2.4.0+dfsg/src/tests/java/org/broadinstitute/dropseqrna/censusseq/SNPGenomicBasePileUpTest.java:32: testng ==> testing
data/drop-seq-2.4.0+dfsg/src/tests/java/org/broadinstitute/dropseqrna/censusseq/SNPGenomicBasePileupIteratorTest.java:32: testng ==> testing
data/drop-seq-2.4.0+dfsg/src/tests/java/org/broadinstitute/dropseqrna/censusseq/SNPGenomicBasePileupIteratorTest.java:33: testng ==> testing
data/drop-seq-2.4.0+dfsg/src/tests/java/org/broadinstitute/dropseqrna/censusseq/SNPSampleRecordTest.java:8: testng ==> testing
data/drop-seq-2.4.0+dfsg/src/tests/java/org/broadinstitute/dropseqrna/censusseq/SummaryPileUpTest.java:27: testng ==> testing
data/drop-seq-2.4.0+dfsg/src/tests/java/org/broadinstitute/dropseqrna/censusseq/SummaryPileUpTest.java:28: testng ==> testing
data/drop-seq-2.4.0+dfsg/src/tests/java/org/broadinstitute/dropseqrna/cluster/MergeDgeSparseTest.java:30: testng ==> testing
data/drop-seq-2.4.0+dfsg/src/tests/java/org/broadinstitute/dropseqrna/cluster/MergeDgeSparseTest.java:31: testng ==> testing
data/drop-seq-2.4.0+dfsg/src/tests/java/org/broadinstitute/dropseqrna/cluster/MergeDgeSparseTest.java:32: testng ==> testing
data/drop-seq-2.4.0+dfsg/src/tests/java/org/broadinstitute/dropseqrna/matrixmarket/MatrixMarketReaderWriterTest.java:26: testng ==> testing
data/drop-seq-2.4.0+dfsg/src/tests/java/org/broadinstitute/dropseqrna/matrixmarket/MatrixMarketReaderWriterTest.java:27: testng ==> testing
data/drop-seq-2.4.0+dfsg/src/tests/java/org/broadinstitute/dropseqrna/matrixmarket/MatrixMarketReaderWriterTest.java:28: testng ==> testing
data/drop-seq-2.4.0+dfsg/src/tests/java/org/broadinstitute/dropseqrna/metrics/BamTagHistogramTest.java:7: testng ==> testing
data/drop-seq-2.4.0+dfsg/src/tests/java/org/broadinstitute/dropseqrna/metrics/BamTagOfTagCountsTest.java:8: testng ==> testing
data/drop-seq-2.4.0+dfsg/src/tests/java/org/broadinstitute/dropseqrna/metrics/ComputeUMISharingTest.java:29: testng ==> testing
data/drop-seq-2.4.0+dfsg/src/tests/java/org/broadinstitute/dropseqrna/metrics/ComputeUMISharingTest.java:30: testng ==> testing
data/drop-seq-2.4.0+dfsg/src/tests/java/org/broadinstitute/dropseqrna/metrics/ComputeUMISharingTest.java:31: testng ==> testing
data/drop-seq-2.4.0+dfsg/src/tests/java/org/broadinstitute/dropseqrna/metrics/ComputeUMISharingTest.java:79: mappeds ==> mapped
data/drop-seq-2.4.0+dfsg/src/tests/java/org/broadinstitute/dropseqrna/metrics/ComputeUMISharingTest.java:81: mappeds ==> mapped
data/drop-seq-2.4.0+dfsg/src/tests/java/org/broadinstitute/dropseqrna/metrics/CountUnmatchedSampleIndicesTest.java:27: testng ==> testing
data/drop-seq-2.4.0+dfsg/src/tests/java/org/broadinstitute/dropseqrna/metrics/CountUnmatchedSampleIndicesTest.java:28: testng ==> testing
data/drop-seq-2.4.0+dfsg/src/tests/java/org/broadinstitute/dropseqrna/metrics/CountUnmatchedSampleIndicesTest.java:29: testng ==> testing
data/drop-seq-2.4.0+dfsg/src/tests/java/org/broadinstitute/dropseqrna/metrics/GatherReadQualityMetricsTest.java:7: testng ==> testing
data/drop-seq-2.4.0+dfsg/src/tests/java/org/broadinstitute/dropseqrna/metrics/TagReadWithGeneExonFunctionTest.java:13: testng ==> testing
data/drop-seq-2.4.0+dfsg/src/tests/java/org/broadinstitute/dropseqrna/metrics/TagReadWithGeneExonFunctionTest.java:14: testng ==> testing
data/drop-seq-2.4.0+dfsg/src/tests/java/org/broadinstitute/dropseqrna/metrics/TagReadWithGeneFunctionTest.java:13: testng ==> testing
data/drop-seq-2.4.0+dfsg/src/tests/java/org/broadinstitute/dropseqrna/metrics/TagReadWithGeneFunctionTest.java:14: testng ==> testing
data/drop-seq-2.4.0+dfsg/src/tests/java/org/broadinstitute/dropseqrna/metrics/TagReadWithIntervalTest.java:9: testng ==> testing
data/drop-seq-2.4.0+dfsg/src/tests/java/org/broadinstitute/dropseqrna/metrics/TagReadWithIntervalTest.java:10: testng ==> testing
data/drop-seq-2.4.0+dfsg/src/tests/java/org/broadinstitute/dropseqrna/readtrimming/PolyAFinderTest.java:27: testng ==> testing
data/drop-seq-2.4.0+dfsg/src/tests/java/org/broadinstitute/dropseqrna/readtrimming/PolyAFinderTest.java:28: testng ==> testing
data/drop-seq-2.4.0+dfsg/src/tests/java/org/broadinstitute/dropseqrna/readtrimming/PolyATrimmerTest.java:30: testng ==> testing
data/drop-seq-2.4.0+dfsg/src/tests/java/org/broadinstitute/dropseqrna/readtrimming/PolyATrimmerTest.java:31: testng ==> testing
data/drop-seq-2.4.0+dfsg/src/tests/java/org/broadinstitute/dropseqrna/readtrimming/PolyATrimmerTest.java:32: testng ==> testing
data/drop-seq-2.4.0+dfsg/src/tests/java/org/broadinstitute/dropseqrna/readtrimming/PolyAWithAdapterFinderTest.java:29: testng ==> testing
data/drop-seq-2.4.0+dfsg/src/tests/java/org/broadinstitute/dropseqrna/readtrimming/PolyAWithAdapterFinderTest.java:30: testng ==> testing
data/drop-seq-2.4.0+dfsg/src/tests/java/org/broadinstitute/dropseqrna/readtrimming/PolyAWithAdapterFinderTest.java:31: testng ==> testing
data/drop-seq-2.4.0+dfsg/src/tests/java/org/broadinstitute/dropseqrna/readtrimming/TrimSequenceTemplateTest.java:28: testng ==> testing
data/drop-seq-2.4.0+dfsg/src/tests/java/org/broadinstitute/dropseqrna/readtrimming/TrimSequenceTemplateTest.java:29: testng ==> testing
data/drop-seq-2.4.0+dfsg/src/tests/java/org/broadinstitute/dropseqrna/readtrimming/TrimStartingSequenceTest.java:31: testng ==> testing
data/drop-seq-2.4.0+dfsg/src/tests/java/org/broadinstitute/dropseqrna/readtrimming/TrimStartingSequenceTest.java:32: testng ==> testing
data/drop-seq-2.4.0+dfsg/src/tests/java/org/broadinstitute/dropseqrna/spermseq/metrics/duplicates/SpermSeqMarkDuplicatesTest.java:36: testng ==> testing
data/drop-seq-2.4.0+dfsg/src/tests/java/org/broadinstitute/dropseqrna/spermseq/metrics/spermalleles/GenotypeSpermTest.java:7: testng ==> testing
data/drop-seq-2.4.0+dfsg/src/tests/java/org/broadinstitute/dropseqrna/spermseq/metrics/spermalleles/GenotypeSpermTest.java:8: testng ==> testing
data/drop-seq-2.4.0+dfsg/src/tests/java/org/broadinstitute/dropseqrna/utils/BaseDistributionAtReadPositionTest.java:7: testng ==> testing
data/drop-seq-2.4.0+dfsg/src/tests/java/org/broadinstitute/dropseqrna/utils/BaseDistributionAtReadPositionTest.java:8: testng ==> testing
data/drop-seq-2.4.0+dfsg/src/tests/java/org/broadinstitute/dropseqrna/utils/BaseQualityFilterTest.java:9: testng ==> testing
data/drop-seq-2.4.0+dfsg/src/tests/java/org/broadinstitute/dropseqrna/utils/BaseRangeTest.java:27: testng ==> testing
data/drop-seq-2.4.0+dfsg/src/tests/java/org/broadinstitute/dropseqrna/utils/FileListParsingUtilsTest.java:29: testng ==> testing
data/drop-seq-2.4.0+dfsg/src/tests/java/org/broadinstitute/dropseqrna/utils/FileListParsingUtilsTest.java:30: testng ==> testing
data/drop-seq-2.4.0+dfsg/src/tests/java/org/broadinstitute/dropseqrna/utils/FilterBamByTagTest.java:29: testng ==> testing
data/drop-seq-2.4.0+dfsg/src/tests/java/org/broadinstitute/dropseqrna/utils/FilterBamByTagTest.java:30: testng ==> testing
data/drop-seq-2.4.0+dfsg/src/tests/java/org/broadinstitute/dropseqrna/utils/FilterBamByTagTest.java:31: testng ==> testing
data/drop-seq-2.4.0+dfsg/src/tests/java/org/broadinstitute/dropseqrna/utils/FilterBamByTagTest.java:282: 2st ==> 2nd
data/drop-seq-2.4.0+dfsg/src/tests/java/org/broadinstitute/dropseqrna/utils/FilterBamTest.java:30: testng ==> testing
data/drop-seq-2.4.0+dfsg/src/tests/java/org/broadinstitute/dropseqrna/utils/FilterBamTest.java:31: testng ==> testing
data/drop-seq-2.4.0+dfsg/src/tests/java/org/broadinstitute/dropseqrna/utils/FilterBamTest.java:32: testng ==> testing
data/drop-seq-2.4.0+dfsg/src/tests/java/org/broadinstitute/dropseqrna/utils/FilterBamTest.java:33: testng ==> testing
data/drop-seq-2.4.0+dfsg/src/tests/java/org/broadinstitute/dropseqrna/utils/FilterBamTest.java:34: testng ==> testing
data/drop-seq-2.4.0+dfsg/src/tests/java/org/broadinstitute/dropseqrna/utils/IntervalTagComparatorTest.java:33: testng ==> testing
data/drop-seq-2.4.0+dfsg/src/tests/java/org/broadinstitute/dropseqrna/utils/IntervalTagComparatorTest.java:34: testng ==> testing
data/drop-seq-2.4.0+dfsg/src/tests/java/org/broadinstitute/dropseqrna/utils/ObjectCounterTest.java:8: testng ==> testing
data/drop-seq-2.4.0+dfsg/src/tests/java/org/broadinstitute/dropseqrna/utils/OrderAssertingIteratorTest.java:3: testng ==> testing
data/drop-seq-2.4.0+dfsg/src/tests/java/org/broadinstitute/dropseqrna/utils/OrderAssertingIteratorTest.java:4: testng ==> testing
data/drop-seq-2.4.0+dfsg/src/tests/java/org/broadinstitute/dropseqrna/utils/PeekableGroupingIteratorTest.java:27: testng ==> testing
data/drop-seq-2.4.0+dfsg/src/tests/java/org/broadinstitute/dropseqrna/utils/PeekableGroupingIteratorTest.java:28: testng ==> testing
data/drop-seq-2.4.0+dfsg/src/tests/java/org/broadinstitute/dropseqrna/utils/RetainRemoveListTest.java:33: testng ==> testing
data/drop-seq-2.4.0+dfsg/src/tests/java/org/broadinstitute/dropseqrna/utils/SequenceDictionaryIntersectionTest.java:33: testng ==> testing
data/drop-seq-2.4.0+dfsg/src/tests/java/org/broadinstitute/dropseqrna/utils/SequenceDictionaryIntersectionTest.java:34: testng ==> testing
data/drop-seq-2.4.0+dfsg/src/tests/java/org/broadinstitute/dropseqrna/utils/SequenceDictionaryIntersectionTest.java:35: testng ==> testing
data/drop-seq-2.4.0+dfsg/src/tests/java/org/broadinstitute/dropseqrna/utils/SplitBamByCellTest.java:30: testng ==> testing
data/drop-seq-2.4.0+dfsg/src/tests/java/org/broadinstitute/dropseqrna/utils/TagBamWithReadSequenceExtendedTest.java:28: testng ==> testing
data/drop-seq-2.4.0+dfsg/src/tests/java/org/broadinstitute/dropseqrna/utils/TagBamWithReadSequenceExtendedTest.java:29: testng ==> testing
data/drop-seq-2.4.0+dfsg/src/tests/java/org/broadinstitute/dropseqrna/utils/TagBamWithReadSequenceExtendedTest.java:30: testng ==> testing
data/drop-seq-2.4.0+dfsg/src/tests/java/org/broadinstitute/dropseqrna/utils/TestUtils.java:37: testng ==> testing
data/drop-seq-2.4.0+dfsg/src/tests/java/org/broadinstitute/dropseqrna/utils/VariantContextSingletonFilterTest.java:10: testng ==> testing
data/drop-seq-2.4.0+dfsg/src/tests/java/org/broadinstitute/dropseqrna/utils/VariantContextSingletonFilterTest.java:11: testng ==> testing
data/drop-seq-2.4.0+dfsg/src/tests/java/org/broadinstitute/dropseqrna/utils/alignmentcomparison/CompareDropSeqAlignmentsTest.java:9: testng ==> testing
data/drop-seq-2.4.0+dfsg/src/tests/java/org/broadinstitute/dropseqrna/utils/alignmentcomparison/CompareDropSeqAlignmentsTest.java:10: testng ==> testing
data/drop-seq-2.4.0+dfsg/src/tests/java/org/broadinstitute/dropseqrna/utils/editdistance/BarcodeSubstitutionCollectionTest.java:31: testng ==> testing
data/drop-seq-2.4.0+dfsg/src/tests/java/org/broadinstitute/dropseqrna/utils/editdistance/BarcodeSubstitutionCollectionTest.java:32: testng ==> testing
data/drop-seq-2.4.0+dfsg/src/tests/java/org/broadinstitute/dropseqrna/utils/editdistance/BarcodeWithCountTest.java:3: testng ==> testing
data/drop-seq-2.4.0+dfsg/src/tests/java/org/broadinstitute/dropseqrna/utils/editdistance/BottomUpCollapseResultTest.java:28: testng ==> testing
data/drop-seq-2.4.0+dfsg/src/tests/java/org/broadinstitute/dropseqrna/utils/editdistance/BottomUpCollapseResultTest.java:29: testng ==> testing
data/drop-seq-2.4.0+dfsg/src/tests/java/org/broadinstitute/dropseqrna/utils/editdistance/CollapseBarcodesInPlaceTest.java:12: testng ==> testing
data/drop-seq-2.4.0+dfsg/src/tests/java/org/broadinstitute/dropseqrna/utils/editdistance/CollapseBarcodesInPlaceTest.java:116: substiution ==> substitution
data/drop-seq-2.4.0+dfsg/src/tests/java/org/broadinstitute/dropseqrna/utils/editdistance/CollapseBarcodesInPlaceTest.java:164: substiution ==> substitution
data/drop-seq-2.4.0+dfsg/src/tests/java/org/broadinstitute/dropseqrna/utils/editdistance/CollapseTagWithContextTest.java:36: testng ==> testing
data/drop-seq-2.4.0+dfsg/src/tests/java/org/broadinstitute/dropseqrna/utils/editdistance/CollapseTagWithContextTest.java:37: testng ==> testing
data/drop-seq-2.4.0+dfsg/src/tests/java/org/broadinstitute/dropseqrna/utils/editdistance/DetectBeadSubstitutionErrorsTest.java:32: testng ==> testing
data/drop-seq-2.4.0+dfsg/src/tests/java/org/broadinstitute/dropseqrna/utils/editdistance/DetectBeadSubstitutionErrorsTest.java:33: testng ==> testing
data/drop-seq-2.4.0+dfsg/src/tests/java/org/broadinstitute/dropseqrna/utils/editdistance/LevenshteinDistanceResultTest.java:28: testng ==> testing
data/drop-seq-2.4.0+dfsg/src/tests/java/org/broadinstitute/dropseqrna/utils/editdistance/LevenshteinDistanceResultTest.java:125: substiution ==> substitution
data/drop-seq-2.4.0+dfsg/src/tests/java/org/broadinstitute/dropseqrna/utils/editdistance/LevenshteinDistanceResultTest.java:130: substiution ==> substitution
data/drop-seq-2.4.0+dfsg/src/tests/java/org/broadinstitute/dropseqrna/utils/editdistance/MapBarcodesByEditDistanceTest.java:46: testng ==> testing
data/drop-seq-2.4.0+dfsg/src/tests/java/org/broadinstitute/dropseqrna/utils/editdistance/MapBarcodesByEditDistanceTest.java:346: corrrect ==> correct
data/drop-seq-2.4.0+dfsg/src/tests/java/org/broadinstitute/dropseqrna/utils/modularfileparser/ParserTest.java:28: testng ==> testing
data/drop-seq-2.4.0+dfsg/src/tests/java/org/broadinstitute/dropseqrna/utils/readiterators/AggregatedTagOrderIteratorTest.java:34: testng ==> testing
data/drop-seq-2.4.0+dfsg/src/tests/java/org/broadinstitute/dropseqrna/utils/readiterators/AggregatedTagOrderIteratorTest.java:35: testng ==> testing
data/drop-seq-2.4.0+dfsg/src/tests/java/org/broadinstitute/dropseqrna/utils/readiterators/BAMTagValueFilterTest.java:8: testng ==> testing
data/drop-seq-2.4.0+dfsg/src/tests/java/org/broadinstitute/dropseqrna/utils/readiterators/BAMTagValueFilterTest.java:9: testng ==> testing
data/drop-seq-2.4.0+dfsg/src/tests/java/org/broadinstitute/dropseqrna/utils/readiterators/BamTagCountingIteratorTest.java:7: testng ==> testing
data/drop-seq-2.4.0+dfsg/src/tests/java/org/broadinstitute/dropseqrna/utils/readiterators/BamTagCountingIteratorTest.java:8: testng ==> testing
data/drop-seq-2.4.0+dfsg/src/tests/java/org/broadinstitute/dropseqrna/utils/readiterators/CellBarcodeFilteringIteratorTest.java:8: testng ==> testing
data/drop-seq-2.4.0+dfsg/src/tests/java/org/broadinstitute/dropseqrna/utils/readiterators/CellBarcodeFilteringIteratorTest.java:9: testng ==> testing
data/drop-seq-2.4.0+dfsg/src/tests/java/org/broadinstitute/dropseqrna/utils/readiterators/ChromosomeFilteringIteratorTest.java:8: testng ==> testing
data/drop-seq-2.4.0+dfsg/src/tests/java/org/broadinstitute/dropseqrna/utils/readiterators/DEIteratorUtilsTest.java:6: testng ==> testing
data/drop-seq-2.4.0+dfsg/src/tests/java/org/broadinstitute/dropseqrna/utils/readiterators/DEIteratorUtilsTest.java:7: testng ==> testing
data/drop-seq-2.4.0+dfsg/src/tests/java/org/broadinstitute/dropseqrna/utils/readiterators/EditDistanceFilteringIteratorTest.java:6: testng ==> testing
data/drop-seq-2.4.0+dfsg/src/tests/java/org/broadinstitute/dropseqrna/utils/readiterators/EditDistanceFilteringIteratorTest.java:7: testng ==> testing
data/drop-seq-2.4.0+dfsg/src/tests/java/org/broadinstitute/dropseqrna/utils/readiterators/FunctionalDataProcessorTest.java:5: testng ==> testing
data/drop-seq-2.4.0+dfsg/src/tests/java/org/broadinstitute/dropseqrna/utils/readiterators/FunctionalDataProcessorTest.java:6: testng ==> testing
data/drop-seq-2.4.0+dfsg/src/tests/java/org/broadinstitute/dropseqrna/utils/readiterators/GeneFunctionIteratorWrapperTest.java:7: testng ==> testing
data/drop-seq-2.4.0+dfsg/src/tests/java/org/broadinstitute/dropseqrna/utils/readiterators/GeneFunctionIteratorWrapperTest.java:130: assiged ==> assigned
data/drop-seq-2.4.0+dfsg/src/tests/java/org/broadinstitute/dropseqrna/utils/readiterators/GeneStrandFilteringIteratorTest.java:6: testng ==> testing
data/drop-seq-2.4.0+dfsg/src/tests/java/org/broadinstitute/dropseqrna/utils/readiterators/GeneStrandFilteringIteratorTest.java:7: testng ==> testing
data/drop-seq-2.4.0+dfsg/src/tests/java/org/broadinstitute/dropseqrna/utils/readiterators/MapQualityProcessorTest.java:30: testng ==> testing
data/drop-seq-2.4.0+dfsg/src/tests/java/org/broadinstitute/dropseqrna/utils/readiterators/TagOrderIteratorTest.java:32: testng ==> testing
data/drop-seq-2.4.0+dfsg/src/tests/java/org/broadinstitute/dropseqrna/utils/readiterators/TagOrderIteratorTest.java:73: toi ==> to, toy
data/drop-seq-2.4.0+dfsg/src/tests/java/org/broadinstitute/dropseqrna/utils/readiterators/TagOrderIteratorTest.java:78: toi ==> to, toy
data/drop-seq-2.4.0+dfsg/src/tests/java/org/broadinstitute/dropseqrna/utils/readiterators/TagOrderIteratorTest.java:79: toi ==> to, toy
data/drop-seq-2.4.0+dfsg/src/tests/java/org/broadinstitute/dropseqrna/utils/readiterators/TagOrderIteratorTest.java:101: toi ==> to, toy
data/drop-seq-2.4.0+dfsg/src/tests/java/org/broadinstitute/dropseqrna/utils/readiterators/TagOrderIteratorTest.java:107: toi ==> to, toy
data/drop-seq-2.4.0+dfsg/src/tests/java/org/broadinstitute/dropseqrna/utils/readiterators/TagOrderIteratorTest.java:108: toi ==> to, toy
data/drop-seq-2.4.0+dfsg/src/tests/java/org/broadinstitute/dropseqrna/utils/readiterators/TagOrderIteratorTest.java:120: toi ==> to, toy
data/drop-seq-2.4.0+dfsg/src/tests/java/org/broadinstitute/dropseqrna/utils/readiterators/TagOrderIteratorTest.java:125: toi ==> to, toy
data/drop-seq-2.4.0+dfsg/src/tests/java/org/broadinstitute/dropseqrna/utils/readiterators/TagOrderIteratorTest.java:126: toi ==> to, toy
data/drop-seq-2.4.0+dfsg/src/tests/java/org/broadinstitute/dropseqrna/utils/readiterators/TagOrderIteratorTest.java:140: toi ==> to, toy
data/drop-seq-2.4.0+dfsg/src/tests/java/org/broadinstitute/dropseqrna/utils/readiterators/TagOrderIteratorTest.java:147: toi ==> to, toy
data/drop-seq-2.4.0+dfsg/src/tests/java/org/broadinstitute/dropseqrna/utils/readiterators/TagOrderIteratorTest.java:148: toi ==> to, toy
data/drop-seq-2.4.0+dfsg/src/tests/java/org/broadinstitute/dropseqrna/utils/readiterators/TagValueFilteringIteratorTest.java:6: testng ==> testing
data/drop-seq-2.4.0+dfsg/src/tests/java/org/broadinstitute/dropseqrna/utils/readiterators/TagValueFilteringIteratorTest.java:7: testng ==> testing
data/drop-seq-2.4.0+dfsg/src/tests/java/org/broadinstitute/dropseqrna/utils/readiterators/TagValueProcessorTest.java:29: testng ==> testing
data/drop-seq-2.4.0+dfsg/src/tests/java/org/broadinstitute/dropseqrna/utils/readiterators/TagValueProcessorTest.java:49: toi ==> to, toy
data/drop-seq-2.4.0+dfsg/src/tests/java/org/broadinstitute/dropseqrna/utils/readiterators/TagValueProcessorTest.java:60: toi ==> to, toy
data/drop-seq-2.4.0+dfsg/src/tests/java/org/broadinstitute/dropseqrna/utils/readiterators/TagValueProcessorTest.java:61: toi ==> to, toy
data/drop-seq-2.4.0+dfsg/src/tests/java/org/broadinstitute/dropseqrna/utils/readiterators/TagValueProcessorTest.java:78: toi ==> to, toy
data/drop-seq-2.4.0+dfsg/src/tests/java/org/broadinstitute/dropseqrna/utils/readiterators/TagValueProcessorTest.java:89: toi ==> to, toy
data/drop-seq-2.4.0+dfsg/src/tests/java/org/broadinstitute/dropseqrna/utils/readiterators/TagValueProcessorTest.java:90: toi ==> to, toy
data/drop-seq-2.4.0+dfsg/src/tests/java/org/broadinstitute/dropseqrna/utils/readiterators/UMIReadIteratorTest.java:8: testng ==> testing
data/drop-seq-2.4.0+dfsg/src/tests/java/org/broadinstitute/dropseqrna/utils/readiterators/UMIReadIteratorTest.java:9: testng ==> testing
data/drop-seq-2.4.0+dfsg/src/tests/java/org/broadinstitute/dropseqrna/utils/readpairs/ReadPairTest.java:8: testng ==> testing
data/drop-seq-2.4.0+dfsg/src/tests/java/org/broadinstitute/dropseqrna/utils/referencetools/MaskReferenceSequenceTest.java:7: testng ==> testing
data/drop-seq-2.4.0+dfsg/src/tests/java/org/broadinstitute/dropseqrna/utils/referencetools/MaskReferenceSequenceTest.java:8: testng ==> testing
data/drop-seq-2.4.0+dfsg/src/tests/java/org/broadinstitute/dropseqrna/utils/statistics/BinomialStatisticsTest.java:29: testng ==> testing
data/drop-seq-2.4.0+dfsg/src/tests/java/org/broadinstitute/dropseqrna/utils/statistics/BinomialStatisticsTest.java:30: testng ==> testing
data/drop-seq-2.4.0+dfsg/src/tests/java/org/broadinstitute/dropseqrna/utils/statistics/DiversityTest.java:28: testng ==> testing
data/drop-seq-2.4.0+dfsg/src/tests/java/org/broadinstitute/dropseqrna/vcftools/CreateSnpIntervalFromVcfTest.java:28: testng ==> testing
data/drop-seq-2.4.0+dfsg/src/tests/java/org/broadinstitute/dropseqrna/vcftools/CreateSnpIntervalFromVcfTest.java:29: testng ==> testing
data/drop-seq-2.4.0+dfsg/src/tests/java/org/broadinstitute/dropseqrna/vcftools/filters/AlleleFrequencyTagFilterTest.java:7: testng ==> testing
data/drop-seq-2.4.0+dfsg/src/tests/java/org/broadinstitute/dropseqrna/vcftools/filters/AlleleFrequencyTagFilterTest.java:8: testng ==> testing
data/drop-seq-2.4.0+dfsg/src/tests/java/org/broadinstitute/dropseqrna/vcftools/filters/CallRateVariantContextFilterTest.java:10: testng ==> testing
data/drop-seq-2.4.0+dfsg/src/tests/java/org/broadinstitute/dropseqrna/vcftools/filters/CallRateVariantContextFilterTest.java:11: testng ==> testing
data/drop-seq-2.4.0+dfsg/src/tests/java/org/broadinstitute/dropseqrna/vcftools/filters/FlipSNPFilterTest.java:10: testng ==> testing
data/drop-seq-2.4.0+dfsg/src/tests/java/org/broadinstitute/dropseqrna/vcftools/filters/FlipSNPFilterTest.java:11: testng ==> testing
data/drop-seq-2.4.0+dfsg/testdata/org/broadinstitute/dropseq/cluster/selected_cells.1.txt:4: preceeded ==> preceded, proceeded
data/drop-seq-2.4.0+dfsg/testdata/org/broadinstitute/dropseq/metrics/compute_umi_sharing.mapped.sam:98: BA ==> BY, BE
data/drop-seq-2.4.0+dfsg/testdata/org/broadinstitute/dropseq/metrics/compute_umi_sharing.mapped.sam:166: BA ==> BY, BE
data/drop-seq-2.4.0+dfsg/testdata/org/broadinstitute/dropseq/metrics/compute_umi_sharing.mapped.sam:366: BA ==> BY, BE
data/drop-seq-2.4.0+dfsg/testdata/org/broadinstitute/dropseq/metrics/compute_umi_sharing.mapped.sam:438: BA ==> BY, BE
data/drop-seq-2.4.0+dfsg/testdata/org/broadinstitute/dropseq/metrics/compute_umi_sharing.mapped.sam:678: SELT ==> SET, SELF, SOLD
data/drop-seq-2.4.0+dfsg/testdata/org/broadinstitute/dropseq/metrics/compute_umi_sharing.mapped.sam:678: SELT ==> SET, SELF, SOLD
data/drop-seq-2.4.0+dfsg/testdata/org/broadinstitute/dropseq/metrics/compute_umi_sharing.mapped.sam:680: BA ==> BY, BE
data/drop-seq-2.4.0+dfsg/testdata/org/broadinstitute/dropseq/metrics/compute_umi_sharing.mapped.sam:1058: DAA ==> DATA
data/drop-seq-2.4.0+dfsg/testdata/org/broadinstitute/dropseq/metrics/compute_umi_sharing.mapped.sam:1241: EGE ==> EDGE
data/drop-seq-2.4.0+dfsg/testdata/org/broadinstitute/dropseq/metrics/compute_umi_sharing.mapped.sam:1481: BA ==> BY, BE
data/drop-seq-2.4.0+dfsg/testdata/org/broadinstitute/dropseq/metrics/compute_umi_sharing.mapped.sam:1504: BA ==> BY, BE
data/drop-seq-2.4.0+dfsg/testdata/org/broadinstitute/dropseq/metrics/compute_umi_sharing.mapped.sam:1552: BA ==> BY, BE
data/drop-seq-2.4.0+dfsg/testdata/org/broadinstitute/dropseq/metrics/compute_umi_sharing.mapped.sam:1613: BA ==> BY, BE
data/drop-seq-2.4.0+dfsg/testdata/org/broadinstitute/dropseq/metrics/compute_umi_sharing.mapped.sam:1687: BA ==> BY, BE
data/drop-seq-2.4.0+dfsg/testdata/org/broadinstitute/dropseq/metrics/compute_umi_sharing.mapped.sam:1878: BA ==> BY, BE
data/drop-seq-2.4.0+dfsg/testdata/org/broadinstitute/dropseq/metrics/compute_umi_sharing.mapped.sam:1955: BA ==> BY, BE
data/drop-seq-2.4.0+dfsg/testdata/org/broadinstitute/dropseq/metrics/compute_umi_sharing.mapped.sam:2045: EGE ==> EDGE
data/drop-seq-2.4.0+dfsg/testdata/org/broadinstitute/dropseq/metrics/compute_umi_sharing.mapped.sam:2066: SORD ==> SWORD, SORE, SORED, SAWED, SOARED
data/drop-seq-2.4.0+dfsg/testdata/org/broadinstitute/dropseq/metrics/compute_umi_sharing.mapped.sam:2066: SORD ==> SWORD, SORE, SORED, SAWED, SOARED
data/drop-seq-2.4.0+dfsg/testdata/org/broadinstitute/dropseq/metrics/compute_umi_sharing.mapped.sam:2334: BA ==> BY, BE
data/drop-seq-2.4.0+dfsg/testdata/org/broadinstitute/dropseq/metrics/compute_umi_sharing.mapped.sam:2511: BA ==> BY, BE
data/drop-seq-2.4.0+dfsg/testdata/org/broadinstitute/dropseq/metrics/compute_umi_sharing.mapped.sam:2571: EGE ==> EDGE
data/drop-seq-2.4.0+dfsg/testdata/org/broadinstitute/dropseq/metrics/compute_umi_sharing.mapped.sam:3116: AFE ==> SAFE
data/drop-seq-2.4.0+dfsg/testdata/org/broadinstitute/dropseq/metrics/compute_umi_sharing.mapped.sam:3310: BA ==> BY, BE
data/drop-seq-2.4.0+dfsg/testdata/org/broadinstitute/dropseq/metrics/compute_umi_sharing.mapped.sam:3366: BA ==> BY, BE
data/drop-seq-2.4.0+dfsg/testdata/org/broadinstitute/dropseq/metrics/compute_umi_sharing.unmapped.sam:479: BA ==> BY, BE
data/drop-seq-2.4.0+dfsg/testdata/org/broadinstitute/dropseq/metrics/compute_umi_sharing.unmapped.sam:1078: EGE ==> EDGE
data/drop-seq-2.4.0+dfsg/testdata/org/broadinstitute/dropseq/metrics/compute_umi_sharing.unmapped.sam:1709: EGE ==> EDGE
data/drop-seq-2.4.0+dfsg/testdata/org/broadinstitute/dropseq/metrics/compute_umi_sharing.unmapped.sam:4303: AFE ==> SAFE
data/drop-seq-2.4.0+dfsg/testdata/org/broadinstitute/dropseq/metrics/compute_umi_sharing.unmapped.sam:4351: BA ==> BY, BE
data/drop-seq-2.4.0+dfsg/testdata/org/broadinstitute/dropseq/metrics/compute_umi_sharing.unmapped.sam:5095: AFE ==> SAFE
data/drop-seq-2.4.0+dfsg/testdata/org/broadinstitute/dropseq/metrics/compute_umi_sharing.unmapped.sam:6272: DED ==> DEAD
data/drop-seq-2.4.0+dfsg/testdata/org/broadinstitute/dropseq/metrics/compute_umi_sharing.unmapped.sam:6913: BA ==> BY, BE
data/drop-seq-2.4.0+dfsg/testdata/org/broadinstitute/dropseq/metrics/compute_umi_sharing.unmapped.sam:8691: EGE ==> EDGE
data/drop-seq-2.4.0+dfsg/testdata/org/broadinstitute/dropseq/readtrimming/N701.new_trimmer.sam:428: BA ==> BY, BE
data/drop-seq-2.4.0+dfsg/testdata/org/broadinstitute/dropseq/readtrimming/N701.new_trimmer.sam:770: BA ==> BY, BE
data/drop-seq-2.4.0+dfsg/testdata/org/broadinstitute/dropseq/readtrimming/N701.new_trimmer.sam:819: BA ==> BY, BE
data/drop-seq-2.4.0+dfsg/testdata/org/broadinstitute/dropseq/readtrimming/N701.old_trimmer.sam:428: BA ==> BY, BE
data/drop-seq-2.4.0+dfsg/testdata/org/broadinstitute/dropseq/readtrimming/N701.old_trimmer.sam:770: BA ==> BY, BE
data/drop-seq-2.4.0+dfsg/testdata/org/broadinstitute/dropseq/readtrimming/N701.old_trimmer.sam:819: BA ==> BY, BE
data/drop-seq-2.4.0+dfsg/testdata/org/broadinstitute/dropseq/readtrimming/N701.subset.tagged_filtered.sam:341: DED ==> DEAD
data/drop-seq-2.4.0+dfsg/testdata/org/broadinstitute/dropseq/readtrimming/N701.subset.tagged_filtered.sam:768: BA ==> BY, BE
data/drop-seq-2.4.0+dfsg/testdata/org/broadinstitute/dropseq/readtrimming/N701.subset.tagged_filtered.sam:799: EGE ==> EDGE
data/drop-seq-2.4.0+dfsg/testdata/org/broadinstitute/dropseq/readtrimming/N701.subset.tagged_filtered_start_seq_trimmed.sam:342: DED ==> DEAD
data/drop-seq-2.4.0+dfsg/testdata/org/broadinstitute/dropseq/readtrimming/N701.subset.tagged_filtered_start_seq_trimmed.sam:427: BA ==> BY, BE
data/drop-seq-2.4.0+dfsg/testdata/org/broadinstitute/dropseq/readtrimming/N701.subset.tagged_filtered_start_seq_trimmed.sam:769: BA ==> BY, BE
data/drop-seq-2.4.0+dfsg/testdata/org/broadinstitute/dropseq/readtrimming/N701.subset.tagged_filtered_start_seq_trimmed.sam:800: EGE ==> EDGE
data/drop-seq-2.4.0+dfsg/testdata/org/broadinstitute/dropseq/readtrimming/N701.subset.tagged_filtered_start_seq_trimmed.sam:818: BA ==> BY, BE
data/drop-seq-2.4.0+dfsg/testdata/org/broadinstitute/dropseq/utils/SequenceDictionaryIntersectionTest/chr.vcf:4: Lod ==> Load
data/drop-seq-2.4.0+dfsg/testdata/org/broadinstitute/dropseq/utils/SequenceDictionaryIntersectionTest/chr.vcf:5: Lod ==> Load
data/drop-seq-2.4.0+dfsg/testdata/org/broadinstitute/dropseq/utils/SequenceDictionaryIntersectionTest/chr.vcf:6: Lod ==> Load
data/drop-seq-2.4.0+dfsg/testdata/org/broadinstitute/dropseq/utils/SequenceDictionaryIntersectionTest/chr.vcf:7: Lod ==> Load
data/drop-seq-2.4.0+dfsg/testdata/org/broadinstitute/dropseq/utils/SequenceDictionaryIntersectionTest/chr.vcf:8: Lod ==> Load
data/drop-seq-2.4.0+dfsg/testdata/org/broadinstitute/dropseq/utils/SequenceDictionaryIntersectionTest/chr.vcf:9: Lod ==> Load
data/drop-seq-2.4.0+dfsg/testdata/org/broadinstitute/dropseq/utils/SequenceDictionaryIntersectionTest/chr.vcf:10: Lod ==> Load
data/drop-seq-2.4.0+dfsg/testdata/org/broadinstitute/dropseq/utils/SequenceDictionaryIntersectionTest/chr.vcf:11: Lod ==> Load
data/drop-seq-2.4.0+dfsg/testdata/org/broadinstitute/dropseq/utils/SequenceDictionaryIntersectionTest/chr.vcf:19: sting ==> string
data/drop-seq-2.4.0+dfsg/testdata/org/broadinstitute/dropseq/utils/SequenceDictionaryIntersectionTest/chr.vcf:19: sting ==> string
data/drop-seq-2.4.0+dfsg/testdata/org/broadinstitute/dropseq/utils/SequenceDictionaryIntersectionTest/chr.vcf:19: sting ==> string
data/drop-seq-2.4.0+dfsg/testdata/org/broadinstitute/dropseq/utils/SequenceDictionaryIntersectionTest/chr.vcf:19: sting ==> string
data/drop-seq-2.4.0+dfsg/testdata/org/broadinstitute/dropseq/utils/SequenceDictionaryIntersectionTest/chr.vcf:20: sting ==> string
data/drop-seq-2.4.0+dfsg/testdata/org/broadinstitute/dropseq/utils/SequenceDictionaryIntersectionTest/chr.vcf:20: sting ==> string
data/drop-seq-2.4.0+dfsg/testdata/org/broadinstitute/dropseq/utils/SequenceDictionaryIntersectionTest/chr.vcf:20: sting ==> string
data/drop-seq-2.4.0+dfsg/testdata/org/broadinstitute/dropseq/utils/SequenceDictionaryIntersectionTest/chr.vcf:20: sting ==> string
data/drop-seq-2.4.0+dfsg/testdata/org/broadinstitute/dropseq/utils/SequenceDictionaryIntersectionTest/chr.vcf:21: sting ==> string
data/drop-seq-2.4.0+dfsg/testdata/org/broadinstitute/dropseq/utils/SequenceDictionaryIntersectionTest/chr.vcf:21: sting ==> string
data/drop-seq-2.4.0+dfsg/testdata/org/broadinstitute/dropseq/utils/SequenceDictionaryIntersectionTest/chr.vcf:21: sting ==> string
data/drop-seq-2.4.0+dfsg/testdata/org/broadinstitute/dropseq/utils/SequenceDictionaryIntersectionTest/chr.vcf:21: sting ==> string
data/drop-seq-2.4.0+dfsg/testdata/org/broadinstitute/dropseq/utils/SequenceDictionaryIntersectionTest/chr.vcf:22: sting ==> string
data/drop-seq-2.4.0+dfsg/testdata/org/broadinstitute/dropseq/utils/SequenceDictionaryIntersectionTest/chr.vcf:22: sting ==> string
data/drop-seq-2.4.0+dfsg/testdata/org/broadinstitute/dropseq/utils/SequenceDictionaryIntersectionTest/chr.vcf:22: sting ==> string
data/drop-seq-2.4.0+dfsg/testdata/org/broadinstitute/dropseq/utils/SequenceDictionaryIntersectionTest/chr.vcf:22: sting ==> string
data/drop-seq-2.4.0+dfsg/testdata/org/broadinstitute/dropseq/utils/SequenceDictionaryIntersectionTest/no_chr.vcf:4: Lod ==> Load
data/drop-seq-2.4.0+dfsg/testdata/org/broadinstitute/dropseq/utils/SequenceDictionaryIntersectionTest/no_chr.vcf:5: Lod ==> Load
data/drop-seq-2.4.0+dfsg/testdata/org/broadinstitute/dropseq/utils/SequenceDictionaryIntersectionTest/no_chr.vcf:6: Lod ==> Load
data/drop-seq-2.4.0+dfsg/testdata/org/broadinstitute/dropseq/utils/SequenceDictionaryIntersectionTest/no_chr.vcf:7: Lod ==> Load
data/drop-seq-2.4.0+dfsg/testdata/org/broadinstitute/dropseq/utils/SequenceDictionaryIntersectionTest/no_chr.vcf:8: Lod ==> Load
data/drop-seq-2.4.0+dfsg/testdata/org/broadinstitute/dropseq/utils/SequenceDictionaryIntersectionTest/no_chr.vcf:9: Lod ==> Load
data/drop-seq-2.4.0+dfsg/testdata/org/broadinstitute/dropseq/utils/SequenceDictionaryIntersectionTest/no_chr.vcf:10: Lod ==> Load
data/drop-seq-2.4.0+dfsg/testdata/org/broadinstitute/dropseq/utils/SequenceDictionaryIntersectionTest/no_chr.vcf:11: Lod ==> Load
data/drop-seq-2.4.0+dfsg/testdata/org/broadinstitute/dropseq/utils/SequenceDictionaryIntersectionTest/no_chr.vcf:19: sting ==> string
data/drop-seq-2.4.0+dfsg/testdata/org/broadinstitute/dropseq/utils/SequenceDictionaryIntersectionTest/no_chr.vcf:19: sting ==> string
data/drop-seq-2.4.0+dfsg/testdata/org/broadinstitute/dropseq/utils/SequenceDictionaryIntersectionTest/no_chr.vcf:19: sting ==> string
data/drop-seq-2.4.0+dfsg/testdata/org/broadinstitute/dropseq/utils/SequenceDictionaryIntersectionTest/no_chr.vcf:19: sting ==> string
data/drop-seq-2.4.0+dfsg/testdata/org/broadinstitute/dropseq/utils/SequenceDictionaryIntersectionTest/no_chr.vcf:20: sting ==> string
data/drop-seq-2.4.0+dfsg/testdata/org/broadinstitute/dropseq/utils/SequenceDictionaryIntersectionTest/no_chr.vcf:20: sting ==> string
data/drop-seq-2.4.0+dfsg/testdata/org/broadinstitute/dropseq/utils/SequenceDictionaryIntersectionTest/no_chr.vcf:20: sting ==> string
data/drop-seq-2.4.0+dfsg/testdata/org/broadinstitute/dropseq/utils/SequenceDictionaryIntersectionTest/no_chr.vcf:20: sting ==> string
data/drop-seq-2.4.0+dfsg/testdata/org/broadinstitute/dropseq/utils/SequenceDictionaryIntersectionTest/no_chr.vcf:21: sting ==> string
data/drop-seq-2.4.0+dfsg/testdata/org/broadinstitute/dropseq/utils/SequenceDictionaryIntersectionTest/no_chr.vcf:21: sting ==> string
data/drop-seq-2.4.0+dfsg/testdata/org/broadinstitute/dropseq/utils/SequenceDictionaryIntersectionTest/no_chr.vcf:21: sting ==> string
data/drop-seq-2.4.0+dfsg/testdata/org/broadinstitute/dropseq/utils/SequenceDictionaryIntersectionTest/no_chr.vcf:21: sting ==> string
data/drop-seq-2.4.0+dfsg/testdata/org/broadinstitute/dropseq/utils/SequenceDictionaryIntersectionTest/no_chr.vcf:22: sting ==> string
data/drop-seq-2.4.0+dfsg/testdata/org/broadinstitute/dropseq/utils/SequenceDictionaryIntersectionTest/no_chr.vcf:22: sting ==> string
data/drop-seq-2.4.0+dfsg/testdata/org/broadinstitute/dropseq/utils/SequenceDictionaryIntersectionTest/no_chr.vcf:22: sting ==> string
data/drop-seq-2.4.0+dfsg/testdata/org/broadinstitute/dropseq/utils/SequenceDictionaryIntersectionTest/no_chr.vcf:22: sting ==> string
data/drop-seq-2.4.0+dfsg/testdata/org/broadinstitute/vcftools/test.vcf:4: Lod ==> Load
data/drop-seq-2.4.0+dfsg/testdata/org/broadinstitute/vcftools/test.vcf:5: Lod ==> Load
data/drop-seq-2.4.0+dfsg/testdata/org/broadinstitute/vcftools/test.vcf:6: Lod ==> Load
data/drop-seq-2.4.0+dfsg/testdata/org/broadinstitute/vcftools/test.vcf:7: Lod ==> Load
data/drop-seq-2.4.0+dfsg/testdata/org/broadinstitute/vcftools/test.vcf:8: Lod ==> Load
data/drop-seq-2.4.0+dfsg/testdata/org/broadinstitute/vcftools/test.vcf:9: Lod ==> Load
data/drop-seq-2.4.0+dfsg/testdata/org/broadinstitute/vcftools/test.vcf:10: Lod ==> Load
data/drop-seq-2.4.0+dfsg/testdata/org/broadinstitute/vcftools/test.vcf:11: Lod ==> Load
data/drop-seq-2.4.0+dfsg/testdata/org/broadinstitute/vcftools/test.vcf:19: sting ==> string
data/drop-seq-2.4.0+dfsg/testdata/org/broadinstitute/vcftools/test.vcf:19: sting ==> string
data/drop-seq-2.4.0+dfsg/testdata/org/broadinstitute/vcftools/test.vcf:19: sting ==> string
data/drop-seq-2.4.0+dfsg/testdata/org/broadinstitute/vcftools/test.vcf:19: sting ==> string
data/drop-seq-2.4.0+dfsg/testdata/org/broadinstitute/vcftools/test.vcf:20: sting ==> string
data/drop-seq-2.4.0+dfsg/testdata/org/broadinstitute/vcftools/test.vcf:20: sting ==> string
data/drop-seq-2.4.0+dfsg/testdata/org/broadinstitute/vcftools/test.vcf:20: sting ==> string
data/drop-seq-2.4.0+dfsg/testdata/org/broadinstitute/vcftools/test.vcf:20: sting ==> string
data/drop-seq-2.4.0+dfsg/testdata/org/broadinstitute/vcftools/test.vcf:21: sting ==> string
data/drop-seq-2.4.0+dfsg/testdata/org/broadinstitute/vcftools/test.vcf:21: sting ==> string
data/drop-seq-2.4.0+dfsg/testdata/org/broadinstitute/vcftools/test.vcf:21: sting ==> string
data/drop-seq-2.4.0+dfsg/testdata/org/broadinstitute/vcftools/test.vcf:21: sting ==> string
data/drop-seq-2.4.0+dfsg/testdata/org/broadinstitute/vcftools/test.vcf:22: sting ==> string
data/drop-seq-2.4.0+dfsg/testdata/org/broadinstitute/vcftools/test.vcf:22: sting ==> string
data/drop-seq-2.4.0+dfsg/testdata/org/broadinstitute/vcftools/test.vcf:22: sting ==> string
data/drop-seq-2.4.0+dfsg/testdata/org/broadinstitute/vcftools/test.vcf:22: sting ==> string
data/drop-seq-2.4.0+dfsg/debian/control:18: testng ==> testing
data/drop-seq-2.4.0+dfsg/debian/patches/debian_packaged_libs.patch:56: testng ==> testing
data/drop-seq-2.4.0+dfsg/debian/tests/ref/FilterBam.sam:336: DED ==> DEAD
data/drop-seq-2.4.0+dfsg/debian/tests/ref/FilterBam.sam:763: BA ==> BY, BE
data/drop-seq-2.4.0+dfsg/debian/tests/ref/FilterBam.sam:794: EGE ==> EDGE
data/drop-seq-2.4.0+dfsg/debian/tests/ref/PolyATrimmer.sam:421: BA ==> BY, BE
data/drop-seq-2.4.0+dfsg/debian/tests/ref/PolyATrimmer.sam:763: BA ==> BY, BE
data/drop-seq-2.4.0+dfsg/debian/tests/ref/PolyATrimmer.sam:812: BA ==> BY, BE
data/drop-seq-2.4.0+dfsg/debian/tests/ref/TrimStartingSequence.sam:336: DED ==> DEAD
data/drop-seq-2.4.0+dfsg/debian/tests/ref/TrimStartingSequence.sam:421: BA ==> BY, BE
data/drop-seq-2.4.0+dfsg/debian/tests/ref/TrimStartingSequence.sam:763: BA ==> BY, BE
data/drop-seq-2.4.0+dfsg/debian/tests/ref/TrimStartingSequence.sam:794: EGE ==> EDGE
data/drop-seq-2.4.0+dfsg/debian/tests/ref/TrimStartingSequence.sam:812: BA ==> BY, BE
data/drop-seq-2.4.0+dfsg/.pc/no_git.patch/src/ant/defs.xml:39: testng ==> testing
data/drop-seq-2.4.0+dfsg/.pc/no_git.patch/src/ant/defs.xml:70: testng ==> testing
data/drop-seq-2.4.0+dfsg/.pc/no_git.patch/src/ant/defs.xml:72: testng ==> testing
data/drop-seq-2.4.0+dfsg/.pc/no_git.patch/src/ant/defs.xml:82: testng ==> testing
data/drop-seq-2.4.0+dfsg/.pc/no_git.patch/src/ant/defs.xml:93: testng ==> testing
data/drop-seq-2.4.0+dfsg/.pc/no_git.patch/src/ant/defs.xml:95: testng ==> testing
data/drop-seq-2.4.0+dfsg/.pc/no_git.patch/src/ant/defs.xml:105: testng ==> testing
data/drop-seq-2.4.0+dfsg/.pc/no_git.patch/src/ant/defs.xml:137: testng ==> testing
data/drop-seq-2.4.0+dfsg/.pc/no_git.patch/src/ant/defs.xml:140: testng ==> testing
data/drop-seq-2.4.0+dfsg/.pc/no_git.patch/src/ant/defs.xml:142: testng ==> testing
data/drop-seq-2.4.0+dfsg/.pc/no_git.patch/src/ant/defs.xml:151: testng ==> testing
data/drop-seq-2.4.0+dfsg/.pc/debian_packaged_libs.patch/src/ant/defs.xml:34: testng ==> testing
data/drop-seq-2.4.0+dfsg/.pc/debian_packaged_libs.patch/src/ant/defs.xml:65: testng ==> testing
data/drop-seq-2.4.0+dfsg/.pc/debian_packaged_libs.patch/src/ant/defs.xml:67: testng ==> testing
data/drop-seq-2.4.0+dfsg/.pc/debian_packaged_libs.patch/src/ant/defs.xml:77: testng ==> testing
data/drop-seq-2.4.0+dfsg/.pc/debian_packaged_libs.patch/src/ant/defs.xml:88: testng ==> testing
data/drop-seq-2.4.0+dfsg/.pc/debian_packaged_libs.patch/src/ant/defs.xml:90: testng ==> testing
data/drop-seq-2.4.0+dfsg/.pc/debian_packaged_libs.patch/src/ant/defs.xml:100: testng ==> testing
data/drop-seq-2.4.0+dfsg/.pc/debian_packaged_libs.patch/src/ant/defs.xml:132: testng ==> testing
data/drop-seq-2.4.0+dfsg/.pc/debian_packaged_libs.patch/src/ant/defs.xml:135: testng ==> testing
data/drop-seq-2.4.0+dfsg/.pc/debian_packaged_libs.patch/src/ant/defs.xml:137: testng ==> testing
data/drop-seq-2.4.0+dfsg/.pc/debian_packaged_libs.patch/src/ant/defs.xml:146: testng ==> testing