data/gubbins-2.4.1/CHANGELOG.md:18: tre ==> tree
data/gubbins-2.4.1/CHANGELOG.md:532: uninitalised ==> uninitialised
data/gubbins-2.4.1/CHANGELOG.md:568: boundries ==> boundaries
data/gubbins-2.4.1/README.md:109: wont ==> won't
data/gubbins-2.4.1/README.md:168: Specifiy ==> Specify
data/gubbins-2.4.1/README.md:226: tre ==> tree
data/gubbins-2.4.1/README.md:230: tre ==> tree
data/gubbins-2.4.1/README.md:255: doesnt ==> doesn't, does not
data/gubbins-2.4.1/README.md:259: doesnt ==> doesn't, does not
data/gubbins-2.4.1/obsolete_changelog:51: wont ==> won't
data/gubbins-2.4.1/obsolete_changelog:74: didnt ==> didn't
data/gubbins-2.4.1/obsolete_changelog:74: didnt ==> didn't
data/gubbins-2.4.1/obsolete_changelog:96: dependancy ==> dependency
data/gubbins-2.4.1/obsolete_changelog:145: verion ==> version
data/gubbins-2.4.1/obsolete_changelog:152: werent ==> weren't
data/gubbins-2.4.1/obsolete_changelog:159: wasnt ==> wasn't
data/gubbins-2.4.1/obsolete_changelog:183: theres ==> there's
data/gubbins-2.4.1/python/gubbins/ValidateFastaAlignment.py:61: isnt ==> isn't
data/gubbins-2.4.1/python/gubbins/treebuilders.py:31: tre ==> tree
data/gubbins-2.4.1/python/gubbins/common.py:173: tre ==> tree
data/gubbins-2.4.1/python/gubbins/common.py:539: wont ==> won't
data/gubbins-2.4.1/python/gubbins/common.py:688: tre ==> tree
data/gubbins-2.4.1/python/gubbins/common.py:689: tre ==> tree
data/gubbins-2.4.1/python/gubbins/tests/test_tree_methods.py:5: dependancies ==> dependencies
data/gubbins-2.4.1/python/gubbins/tests/test_tree_methods.py:45: tre ==> tree
data/gubbins-2.4.1/python/gubbins/tests/test_tree_methods.py:46: tre ==> tree
data/gubbins-2.4.1/python/gubbins/tests/test_tree_methods.py:48: tre ==> tree
data/gubbins-2.4.1/python/gubbins/tests/test_tree_methods.py:49: tre ==> tree
data/gubbins-2.4.1/python/gubbins/tests/test_tree_methods.py:50: tre ==> tree
data/gubbins-2.4.1/python/gubbins/tests/test_tree_methods.py:53: tre ==> tree
data/gubbins-2.4.1/python/gubbins/tests/test_tree_methods.py:54: tre ==> tree
data/gubbins-2.4.1/python/gubbins/tests/test_tree_methods.py:55: tre ==> tree
data/gubbins-2.4.1/python/gubbins/tests/test_tree_methods.py:56: tre ==> tree
data/gubbins-2.4.1/python/gubbins/tests/test_tree_methods.py:57: tre ==> tree
data/gubbins-2.4.1/python/gubbins/tests/test_tree_methods.py:61: tre ==> tree
data/gubbins-2.4.1/python/gubbins/tests/test_tree_methods.py:63: tre ==> tree
data/gubbins-2.4.1/python/gubbins/tests/test_tree_methods.py:64: tre ==> tree
data/gubbins-2.4.1/python/gubbins/tests/test_tree_methods.py:65: tre ==> tree
data/gubbins-2.4.1/python/gubbins/tests/test_tree_methods.py:66: tre ==> tree
data/gubbins-2.4.1/python/gubbins/tests/test_tree_methods.py:70: tre ==> tree
data/gubbins-2.4.1/python/gubbins/tests/test_tree_methods.py:72: tre ==> tree
data/gubbins-2.4.1/python/gubbins/tests/test_tree_methods.py:74: tre ==> tree
data/gubbins-2.4.1/python/gubbins/tests/test_tree_methods.py:75: tre ==> tree
data/gubbins-2.4.1/python/gubbins/tests/test_tree_methods.py:76: tre ==> tree
data/gubbins-2.4.1/python/gubbins/tests/test_tree_methods.py:111: tre ==> tree
data/gubbins-2.4.1/python/gubbins/tests/test_tree_methods.py:112: tre ==> tree
data/gubbins-2.4.1/python/gubbins/tests/test_tree_methods.py:113: tre ==> tree
data/gubbins-2.4.1/python/gubbins/tests/test_tree_methods.py:113: tre ==> tree
data/gubbins-2.4.1/python/gubbins/tests/test_tree_methods.py:114: tre ==> tree
data/gubbins-2.4.1/python/gubbins/tests/test_tree_methods.py:118: tre ==> tree
data/gubbins-2.4.1/python/gubbins/tests/test_tree_methods.py:120: tre ==> tree
data/gubbins-2.4.1/python/gubbins/tests/test_tree_methods.py:121: tre ==> tree
data/gubbins-2.4.1/python/gubbins/tests/test_tree_methods.py:122: tre ==> tree
data/gubbins-2.4.1/python/gubbins/tests/test_tree_methods.py:123: tre ==> tree
data/gubbins-2.4.1/python/gubbins/tests/test_tree_methods.py:127: tre ==> tree
data/gubbins-2.4.1/python/gubbins/tests/test_tree_methods.py:130: tre ==> tree
data/gubbins-2.4.1/python/gubbins/tests/test_tree_methods.py:131: tre ==> tree
data/gubbins-2.4.1/python/gubbins/tests/test_tree_methods.py:132: tre ==> tree
data/gubbins-2.4.1/python/gubbins/tests/test_treebuilders.py:23: tre ==> tree
data/gubbins-2.4.1/python/gubbins/tests/test_treebuilders.py:25: tre ==> tree
data/gubbins-2.4.1/src/Newickform.c:236: tihs ==> this
data/gubbins-2.4.1/src/branch_sequences.c:96: begining ==> beginning
data/gubbins-2.4.1/src/gubbins.c:119: Theres ==> There's
data/gubbins-2.4.1/src/parse_phylip.c:68: Couldnt ==> Couldn't
data/gubbins-2.4.1/tests/check_gubbins.c:11: tre ==> tree
data/gubbins-2.4.1/tests/check_gubbins.c:12: tre ==> tree
data/gubbins-2.4.1/tests/check_gubbins.c:12: tre ==> tree
data/gubbins-2.4.1/tests/check_gubbins.c:13: tre ==> tree
data/gubbins-2.4.1/tests/check_gubbins.c:14: tre ==> tree
data/gubbins-2.4.1/tests/check_gubbins.c:15: tre ==> tree
data/gubbins-2.4.1/tests/check_gubbins.c:16: tre ==> tree
data/gubbins-2.4.1/tests/check_gubbins.c:17: tre ==> tree
data/gubbins-2.4.1/tests/check_gubbins.c:18: tre ==> tree
data/gubbins-2.4.1/tests/check_gubbins.c:19: tre ==> tree
data/gubbins-2.4.1/tests/check_gubbins.c:21: tre ==> tree
data/gubbins-2.4.1/tests/check_gubbins.c:22: tre ==> tree
data/gubbins-2.4.1/tests/check_gubbins.c:22: tre ==> tree
data/gubbins-2.4.1/tests/check_gubbins.c:23: tre ==> tree
data/gubbins-2.4.1/tests/check_gubbins.c:23: tre ==> tree
data/gubbins-2.4.1/tests/check_gubbins.c:25: tre ==> tree
data/gubbins-2.4.1/tests/check_gubbins.c:26: tre ==> tree
data/gubbins-2.4.1/tests/check_gubbins.c:27: tre ==> tree
data/gubbins-2.4.1/tests/check_gubbins.c:28: tre ==> tree
data/gubbins-2.4.1/tests/check_gubbins.c:29: tre ==> tree
data/gubbins-2.4.1/tests/check_gubbins.c:30: tre ==> tree
data/gubbins-2.4.1/tests/check_gubbins.c:31: tre ==> tree
data/gubbins-2.4.1/tests/check_gubbins.c:32: tre ==> tree
data/gubbins-2.4.1/tests/check_gubbins.c:38: tre ==> tree
data/gubbins-2.4.1/tests/check_gubbins.c:39: tre ==> tree
data/gubbins-2.4.1/tests/check_gubbins.c:39: tre ==> tree
data/gubbins-2.4.1/tests/check_gubbins.c:40: tre ==> tree
data/gubbins-2.4.1/tests/check_gubbins.c:41: tre ==> tree
data/gubbins-2.4.1/tests/check_gubbins.c:42: tre ==> tree
data/gubbins-2.4.1/tests/check_gubbins.c:43: tre ==> tree
data/gubbins-2.4.1/tests/check_gubbins.c:44: tre ==> tree
data/gubbins-2.4.1/tests/check_gubbins.c:45: tre ==> tree
data/gubbins-2.4.1/tests/check_gubbins.c:46: tre ==> tree
data/gubbins-2.4.1/tests/check_gubbins.c:48: tre ==> tree
data/gubbins-2.4.1/tests/check_gubbins.c:49: tre ==> tree
data/gubbins-2.4.1/tests/check_gubbins.c:50: tre ==> tree
data/gubbins-2.4.1/tests/check_gubbins.c:51: tre ==> tree
data/gubbins-2.4.1/tests/check_gubbins.c:51: tre ==> tree
data/gubbins-2.4.1/tests/check_gubbins.c:52: tre ==> tree
data/gubbins-2.4.1/tests/check_gubbins.c:52: tre ==> tree
data/gubbins-2.4.1/tests/check_gubbins.c:53: tre ==> tree
data/gubbins-2.4.1/tests/check_gubbins.c:53: tre ==> tree
data/gubbins-2.4.1/tests/check_gubbins.c:55: tre ==> tree
data/gubbins-2.4.1/tests/check_gubbins.c:56: tre ==> tree
data/gubbins-2.4.1/tests/check_gubbins.c:57: tre ==> tree
data/gubbins-2.4.1/tests/check_gubbins.c:58: tre ==> tree
data/gubbins-2.4.1/tests/check_gubbins.c:59: tre ==> tree
data/gubbins-2.4.1/tests/check_gubbins.c:60: tre ==> tree
data/gubbins-2.4.1/tests/check_gubbins.c:61: tre ==> tree
data/gubbins-2.4.1/tests/check_gubbins.c:62: tre ==> tree
data/gubbins-2.4.1/tests/check_gubbins.c:68: tre ==> tree
data/gubbins-2.4.1/tests/check_gubbins.c:69: tre ==> tree
data/gubbins-2.4.1/tests/check_gubbins.c:69: tre ==> tree
data/gubbins-2.4.1/tests/check_gubbins.c:71: tre ==> tree
data/gubbins-2.4.1/tests/check_gubbins.c:72: tre ==> tree
data/gubbins-2.4.1/tests/check_gubbins.c:73: tre ==> tree
data/gubbins-2.4.1/tests/check_gubbins.c:74: tre ==> tree
data/gubbins-2.4.1/tests/check_gubbins.c:75: tre ==> tree
data/gubbins-2.4.1/tests/check_gubbins.c:76: tre ==> tree
data/gubbins-2.4.1/tests/check_gubbins.c:77: tre ==> tree
data/gubbins-2.4.1/tests/check_gubbins.c:79: tre ==> tree
data/gubbins-2.4.1/tests/check_gubbins.c:80: tre ==> tree
data/gubbins-2.4.1/tests/check_gubbins.c:80: tre ==> tree
data/gubbins-2.4.1/tests/check_gubbins.c:81: tre ==> tree
data/gubbins-2.4.1/tests/check_gubbins.c:81: tre ==> tree
data/gubbins-2.4.1/tests/check_gubbins.c:83: tre ==> tree
data/gubbins-2.4.1/tests/check_gubbins.c:84: tre ==> tree
data/gubbins-2.4.1/tests/check_gubbins.c:85: tre ==> tree
data/gubbins-2.4.1/tests/check_gubbins.c:86: tre ==> tree
data/gubbins-2.4.1/tests/check_gubbins.c:87: tre ==> tree
data/gubbins-2.4.1/tests/check_gubbins.c:88: tre ==> tree
data/gubbins-2.4.1/tests/check_gubbins.c:89: tre ==> tree
data/gubbins-2.4.1/tests/check_gubbins.c:90: tre ==> tree
data/gubbins-2.4.1/tests/check_gubbins.c:97: tre ==> tree
data/gubbins-2.4.1/debian/patches/spelling-error-in-binary.patch:13: doesnt ==> doesn't, does not
data/gubbins-2.4.1/debian/patches/spelling-error-in-binary.patch:24: doesnt ==> doesn't, does not
data/gubbins-2.4.1/.pc/gubbins_exe_in_usr_lib.patch/src/main.c:62: doesnt ==> doesn't, does not
data/gubbins-2.4.1/.pc/gubbins_exe_in_usr_lib.patch/python/gubbins/common.py:172: tre ==> tree
data/gubbins-2.4.1/.pc/gubbins_exe_in_usr_lib.patch/python/gubbins/common.py:538: wont ==> won't
data/gubbins-2.4.1/.pc/gubbins_exe_in_usr_lib.patch/python/gubbins/common.py:687: tre ==> tree
data/gubbins-2.4.1/.pc/gubbins_exe_in_usr_lib.patch/python/gubbins/common.py:688: tre ==> tree
data/gubbins-2.4.1/.pc/spelling-error-in-binary.patch/src/alignment_file.c:104: doesnt ==> doesn't, does not
data/gubbins-2.4.1/.pc/spelling-error-in-binary.patch/src/main.c:62: doesnt ==> doesn't, does not