data/hisat2-2.2.1/README.md:37: reviwers ==> reviewers
data/hisat2-2.2.1/aligner_bt.cpp:1437: ned ==> need
data/hisat2-2.2.1/aligner_bt.cpp:1437: ned ==> need
data/hisat2-2.2.1/aligner_bt.cpp:1453: ned ==> need
data/hisat2-2.2.1/aligner_bt.cpp:1463: ned ==> need
data/hisat2-2.2.1/aligner_bt.cpp:1575: guarnateed ==> guaranteed
data/hisat2-2.2.1/aligner_bt.cpp:1587: ned ==> need
data/hisat2-2.2.1/aligner_bt.cpp:1593: ned ==> need
data/hisat2-2.2.1/aligner_bt.h:105: becuase ==> because
data/hisat2-2.2.1/aligner_bt.h:112: appropraite ==> appropriate
data/hisat2-2.2.1/aligner_bt.h:130: checkpoing ==> checkpoint
data/hisat2-2.2.1/aligner_cache.h:24: CACHEING ==> CACHING
data/hisat2-2.2.1/aligner_cache.h:485: sav ==> save
data/hisat2-2.2.1/aligner_cache.h:486: sav ==> save
data/hisat2-2.2.1/aligner_cache.h:487: sav ==> save
data/hisat2-2.2.1/aligner_cache.h:490: sav ==> save
data/hisat2-2.2.1/aligner_cache.h:490: sav ==> save
data/hisat2-2.2.1/aligner_cache.h:490: sav ==> save
data/hisat2-2.2.1/aligner_cache.h:490: sav ==> save
data/hisat2-2.2.1/aligner_cache.h:491: sav ==> save
data/hisat2-2.2.1/aligner_cache.h:624: syncronization ==> synchronization
data/hisat2-2.2.1/aligner_result.cpp:141: ned ==> need
data/hisat2-2.2.1/aligner_result.cpp:187: ned ==> need
data/hisat2-2.2.1/aligner_result.cpp:189: ned ==> need
data/hisat2-2.2.1/aligner_result.cpp:1066: ned ==> need
data/hisat2-2.2.1/aligner_result.cpp:1066: ned ==> need
data/hisat2-2.2.1/aligner_result.cpp:1073: ned ==> need
data/hisat2-2.2.1/aligner_result.cpp:1073: ned ==> need
data/hisat2-2.2.1/aligner_result.cpp:1074: ned ==> need
data/hisat2-2.2.1/aligner_result.cpp:1084: ned ==> need
data/hisat2-2.2.1/aligner_result.cpp:1084: ned ==> need
data/hisat2-2.2.1/aligner_result.cpp:1086: ned ==> need
data/hisat2-2.2.1/aligner_result.cpp:1116: ned ==> need
data/hisat2-2.2.1/aligner_result.cpp:1116: ned ==> need
data/hisat2-2.2.1/aligner_result.cpp:1124: ned ==> need
data/hisat2-2.2.1/aligner_result.cpp:1124: ned ==> need
data/hisat2-2.2.1/aligner_result.cpp:1125: ned ==> need
data/hisat2-2.2.1/aligner_result.cpp:1135: ned ==> need
data/hisat2-2.2.1/aligner_result.cpp:1135: ned ==> need
data/hisat2-2.2.1/aligner_result.cpp:1137: ned ==> need
data/hisat2-2.2.1/aligner_result.cpp:2047: ned ==> need
data/hisat2-2.2.1/aligner_result.cpp:2049: ned ==> need
data/hisat2-2.2.1/aligner_result.cpp:2050: ned ==> need
data/hisat2-2.2.1/aligner_result.cpp:2051: ned ==> need
data/hisat2-2.2.1/aligner_result.cpp:2052: ned ==> need
data/hisat2-2.2.1/aligner_result.cpp:2053: ned ==> need
data/hisat2-2.2.1/aligner_result.cpp:2054: ned ==> need
data/hisat2-2.2.1/aligner_result.cpp:2055: ned ==> need
data/hisat2-2.2.1/aligner_result.cpp:2056: ned ==> need
data/hisat2-2.2.1/aligner_result.cpp:2057: ned ==> need
data/hisat2-2.2.1/aligner_result.cpp:2061: ned ==> need
data/hisat2-2.2.1/aligner_result.cpp:2076: ned ==> need
data/hisat2-2.2.1/aligner_result.cpp:2078: ned ==> need
data/hisat2-2.2.1/aligner_result.cpp:2079: ned ==> need
data/hisat2-2.2.1/aligner_result.cpp:2083: ned ==> need
data/hisat2-2.2.1/aligner_result.h:320: trimed ==> trimmed
data/hisat2-2.2.1/aligner_result.h:873: alginment ==> alignment
data/hisat2-2.2.1/aligner_result.h:1279: ned ==> need
data/hisat2-2.2.1/aligner_result.h:1281: ned ==> need
data/hisat2-2.2.1/aligner_result.h:1636: oen ==> one
data/hisat2-2.2.1/aligner_result.h:1639: oen ==> one
data/hisat2-2.2.1/aligner_result.h:1659: oen ==> one
data/hisat2-2.2.1/aligner_result.h:1661: oen ==> one
data/hisat2-2.2.1/aligner_result.h:1714: ned ==> need
data/hisat2-2.2.1/aligner_seed.cpp:218: canN ==> can
data/hisat2-2.2.1/aligner_seed.h:65: penalities ==> penalties
data/hisat2-2.2.1/aligner_seed.h:87: canN ==> can
data/hisat2-2.2.1/aligner_seed.h:106: canN ==> can
data/hisat2-2.2.1/aligner_seed.h:1307: offests ==> offsets
data/hisat2-2.2.1/aligner_seed.h:1330: sumamry ==> summary
data/hisat2-2.2.1/aligner_seed.h:1539: unititialized ==> uninitialized
data/hisat2-2.2.1/aligner_seed.h:1540: bloc ==> block
data/hisat2-2.2.1/aligner_seed.h:1540: unititialized ==> uninitialized
data/hisat2-2.2.1/aligner_seed.h:1548: bloc ==> block
data/hisat2-2.2.1/aligner_seed.h:1552: bloc ==> block
data/hisat2-2.2.1/aligner_seed.h:1585: bloc ==> block
data/hisat2-2.2.1/aligner_seed.h:1588: bloc ==> block
data/hisat2-2.2.1/aligner_seed.h:1590: bloc ==> block
data/hisat2-2.2.1/aligner_seed.h:1591: bloc ==> block
data/hisat2-2.2.1/aligner_seed.h:1894: bloc ==> block
data/hisat2-2.2.1/aligner_seed.h:1943: bloc ==> block
data/hisat2-2.2.1/aligner_seed.h:1950: bloc ==> block
data/hisat2-2.2.1/aligner_seed.h:1953: bloc ==> block
data/hisat2-2.2.1/aligner_seed.h:1972: bloc ==> block
data/hisat2-2.2.1/aligner_seed.h:2049: bloc ==> block
data/hisat2-2.2.1/aligner_seed.h:2107: bloc ==> block
data/hisat2-2.2.1/aligner_seed.h:2118: bloc ==> block
data/hisat2-2.2.1/aligner_seed.h:2120: bloc ==> block
data/hisat2-2.2.1/aligner_seed.h:2128: bloc ==> block
data/hisat2-2.2.1/aligner_seed.h:2131: bloc ==> block
data/hisat2-2.2.1/aligner_seed.h:2155: bloc ==> block
data/hisat2-2.2.1/aligner_seed.h:2172: bloc ==> block
data/hisat2-2.2.1/aligner_seed.h:2175: bloc ==> block
data/hisat2-2.2.1/aligner_seed.h:2348: bloc ==> block
data/hisat2-2.2.1/aligner_seed.h:2374: bloc ==> block
data/hisat2-2.2.1/aligner_seed.h:2380: bloc ==> block
data/hisat2-2.2.1/aligner_seed.h:2388: ot ==> to, of, or
data/hisat2-2.2.1/aligner_seed.h:2403: bloc ==> block
data/hisat2-2.2.1/aligner_seed.h:2406: bloc ==> block
data/hisat2-2.2.1/aligner_seed.h:2407: bloc ==> block
data/hisat2-2.2.1/aligner_seed.h:2414: bloc ==> block
data/hisat2-2.2.1/aligner_seed.h:2417: bloc ==> block
data/hisat2-2.2.1/aligner_seed.h:2418: bloc ==> block
data/hisat2-2.2.1/aligner_seed.h:2424: ot ==> to, of, or
data/hisat2-2.2.1/aligner_seed.h:2426: ot ==> to, of, or
data/hisat2-2.2.1/aligner_seed.h:2431: ot ==> to, of, or
data/hisat2-2.2.1/aligner_seed.h:2439: ot ==> to, of, or
data/hisat2-2.2.1/aligner_seed.h:2442: bloc ==> block
data/hisat2-2.2.1/aligner_seed.h:2443: bloc ==> block
data/hisat2-2.2.1/aligner_seed.h:2465: bloc ==> block
data/hisat2-2.2.1/aligner_seed.h:2477: bloc ==> block
data/hisat2-2.2.1/aligner_seed.h:2478: bloc ==> block
data/hisat2-2.2.1/aligner_seed.h:2484: bloc ==> block
data/hisat2-2.2.1/aligner_seed.h:2488: bloc ==> block
data/hisat2-2.2.1/aligner_seed.h:2517: bloc ==> block
data/hisat2-2.2.1/aligner_seed.h:2533: bloc ==> block
data/hisat2-2.2.1/aligner_seed.h:2538: bloc ==> block
data/hisat2-2.2.1/aligner_seed.h:2542: bloc ==> block
data/hisat2-2.2.1/aligner_seed.h:2571: bloc ==> block
data/hisat2-2.2.1/aligner_seed.h:2654: unititialized ==> uninitialized
data/hisat2-2.2.1/aligner_seed.h:2655: bloc ==> block
data/hisat2-2.2.1/aligner_seed.h:2655: unititialized ==> uninitialized
data/hisat2-2.2.1/aligner_seed.h:2687: bloc ==> block
data/hisat2-2.2.1/aligner_seed.h:2688: bloc ==> block
data/hisat2-2.2.1/aligner_seed.h:2697: bloc ==> block
data/hisat2-2.2.1/aligner_seed.h:2748: bloc ==> block
data/hisat2-2.2.1/aligner_seed.h:2752: bloc ==> block
data/hisat2-2.2.1/aligner_seed.h:2753: bloc ==> block
data/hisat2-2.2.1/aligner_seed.h:2760: bloc ==> block
data/hisat2-2.2.1/aligner_seed.h:2761: bloc ==> block
data/hisat2-2.2.1/aligner_seed.h:2776: bloc ==> block
data/hisat2-2.2.1/aligner_seed.h:2777: bloc ==> block
data/hisat2-2.2.1/aligner_seed.h:2778: bloc ==> block
data/hisat2-2.2.1/aligner_seed.h:2780: bloc ==> block
data/hisat2-2.2.1/aligner_seed.h:2801: bloc ==> block
data/hisat2-2.2.1/aligner_seed.h:2802: bloc ==> block
data/hisat2-2.2.1/aligner_seed.h:2813: bloc ==> block
data/hisat2-2.2.1/aligner_seed.h:2823: bloc ==> block
data/hisat2-2.2.1/aligner_seed.h:2843: unititialized ==> uninitialized
data/hisat2-2.2.1/aligner_seed.h:2844: bloc ==> block
data/hisat2-2.2.1/aligner_seed.h:2844: unititialized ==> uninitialized
data/hisat2-2.2.1/aligner_seed.h:2862: bloc ==> block
data/hisat2-2.2.1/aligner_seed.h:2885: bloc ==> block
data/hisat2-2.2.1/aligner_seed.h:2887: bloc ==> block
data/hisat2-2.2.1/aligner_seed.h:2917: bloc ==> block
data/hisat2-2.2.1/aligner_seed2.h:123: extened ==> extended
data/hisat2-2.2.1/aligner_seed2.h:974: potental ==> potential
data/hisat2-2.2.1/aligner_seed2.h:1049: aligments ==> alignments
data/hisat2-2.2.1/aligner_seed2.h:1276: bloc ==> block
data/hisat2-2.2.1/aligner_seed2.h:1282: bloc ==> block
data/hisat2-2.2.1/aligner_seed2.h:3138: guarnteed ==> guaranteed
data/hisat2-2.2.1/aligner_seed2.h:3626: finsihed ==> finished
data/hisat2-2.2.1/aligner_seed2.h:3735: bloc ==> block
data/hisat2-2.2.1/aligner_seed2.h:3742: bloc ==> block
data/hisat2-2.2.1/aligner_seed2.h:3755: bloc ==> block
data/hisat2-2.2.1/aligner_seed2.h:3758: bloc ==> block
data/hisat2-2.2.1/aligner_seed2.h:3759: bloc ==> block
data/hisat2-2.2.1/aligner_seed2.h:3766: bloc ==> block
data/hisat2-2.2.1/aligner_seed2.h:3769: bloc ==> block
data/hisat2-2.2.1/aligner_seed2.h:3770: bloc ==> block
data/hisat2-2.2.1/aligner_seed2.h:3774: bloc ==> block
data/hisat2-2.2.1/aligner_seed2.h:3775: bloc ==> block
data/hisat2-2.2.1/aligner_seed2.h:3794: ot ==> to, of, or
data/hisat2-2.2.1/aligner_seed2.h:3834: bloc ==> block
data/hisat2-2.2.1/aligner_seed2.h:4084: bloc ==> block
data/hisat2-2.2.1/aligner_seed2.h:4086: bloc ==> block
data/hisat2-2.2.1/aligner_seed2.h:4087: bloc ==> block
data/hisat2-2.2.1/aligner_seed2.h:4098: bloc ==> block
data/hisat2-2.2.1/aligner_seed2.h:4099: bloc ==> block
data/hisat2-2.2.1/aligner_seed2.h:4107: bloc ==> block
data/hisat2-2.2.1/aligner_seed2.h:4116: bloc ==> block
data/hisat2-2.2.1/aligner_seed2.h:4117: bloc ==> block
data/hisat2-2.2.1/aligner_seed2.h:4124: bloc ==> block
data/hisat2-2.2.1/aligner_seed2.h:4142: bloc ==> block
data/hisat2-2.2.1/aligner_seed2.h:4251: bloc ==> block
data/hisat2-2.2.1/aligner_seed_policy.cpp:89: contriubtes ==> contributes
data/hisat2-2.2.1/aligner_seed_policy.cpp:97: penalities ==> penalties
data/hisat2-2.2.1/aligner_seed_policy.cpp:111: penalities ==> penalties
data/hisat2-2.2.1/aligner_seed_policy.cpp:194: sqaure ==> square
data/hisat2-2.2.1/aligner_seed_policy.cpp:641: sqaure ==> square
data/hisat2-2.2.1/aligner_seed_policy.h:55: contriubtes ==> contributes
data/hisat2-2.2.1/aligner_seed_policy.h:63: penalities ==> penalties
data/hisat2-2.2.1/aligner_seed_policy.h:77: penalities ==> penalties
data/hisat2-2.2.1/aligner_seed_policy.h:151: sqaure ==> square
data/hisat2-2.2.1/aligner_sw.cpp:129: referece ==> reference
data/hisat2-2.2.1/aligner_sw.cpp:150: upto ==> up to
data/hisat2-2.2.1/aligner_sw.cpp:230: refence ==> reference
data/hisat2-2.2.1/aligner_sw.cpp:231: upto ==> up to
data/hisat2-2.2.1/aligner_sw.cpp:256: referece ==> reference
data/hisat2-2.2.1/aligner_sw.cpp:367: refence ==> reference
data/hisat2-2.2.1/aligner_sw.cpp:414: ned ==> need
data/hisat2-2.2.1/aligner_sw.cpp:414: ned ==> need
data/hisat2-2.2.1/aligner_sw.cpp:425: ned ==> need
data/hisat2-2.2.1/aligner_sw.cpp:431: ned ==> need
data/hisat2-2.2.1/aligner_sw.cpp:452: ned ==> need
data/hisat2-2.2.1/aligner_sw.cpp:457: ned ==> need
data/hisat2-2.2.1/aligner_sw.cpp:750: becuase ==> because
data/hisat2-2.2.1/aligner_sw.cpp:759: becuase ==> because
data/hisat2-2.2.1/aligner_sw.cpp:1491: penalities ==> penalties
data/hisat2-2.2.1/aligner_sw.cpp:1514: penalities ==> penalties
data/hisat2-2.2.1/aligner_sw.cpp:1586: ned ==> need
data/hisat2-2.2.1/aligner_sw.cpp:1744: ned ==> need
data/hisat2-2.2.1/aligner_sw.cpp:2750: penalities ==> penalties
data/hisat2-2.2.1/aligner_sw.cpp:2810: ned ==> need
data/hisat2-2.2.1/aligner_sw.cpp:2850: ned ==> need
data/hisat2-2.2.1/aligner_sw.cpp:2883: ned ==> need
data/hisat2-2.2.1/aligner_sw.cpp:2918: ned ==> need
data/hisat2-2.2.1/aligner_sw.cpp:2953: ned ==> need
data/hisat2-2.2.1/aligner_sw.cpp:2989: ned ==> need
data/hisat2-2.2.1/aligner_sw.cpp:3055: ned ==> need
data/hisat2-2.2.1/aligner_sw.cpp:3167: penalities ==> penalties
data/hisat2-2.2.1/aligner_sw_common.h:34: alginment ==> alignment
data/hisat2-2.2.1/aligner_sw_driver.h:199: Initialze ==> Initialize
data/hisat2-2.2.1/aligner_sw_driver.h:838: bloc ==> block
data/hisat2-2.2.1/aligner_sw_driver.h:870: bloc ==> block
data/hisat2-2.2.1/aligner_sw_driver.h:871: bloc ==> block
data/hisat2-2.2.1/aligner_sw_driver.h:883: bloc ==> block
data/hisat2-2.2.1/aligner_sw_driver.h:887: bloc ==> block
data/hisat2-2.2.1/aligner_sw_driver.h:919: bloc ==> block
data/hisat2-2.2.1/aligner_sw_driver.h:936: bloc ==> block
data/hisat2-2.2.1/aligner_sw_driver.h:948: bloc ==> block
data/hisat2-2.2.1/aligner_sw_driver.h:952: bloc ==> block
data/hisat2-2.2.1/aligner_sw_driver.h:984: bloc ==> block
data/hisat2-2.2.1/aligner_sw_driver.h:1332: intialize ==> initialize
data/hisat2-2.2.1/aligner_sw_driver.h:1419: ther ==> there, their, the, other
data/hisat2-2.2.1/aligner_sw_driver.h:1548: ned ==> need
data/hisat2-2.2.1/aligner_sw_driver.h:2016: intialize ==> initialize
data/hisat2-2.2.1/aligner_sw_driver.h:2112: ther ==> there, their, the, other
data/hisat2-2.2.1/aligner_sw_driver.h:2257: ned ==> need
data/hisat2-2.2.1/aligner_sw_driver.h:2465: oll ==> all, ole, old, olly, oil
data/hisat2-2.2.1/aligner_sw_driver.h:2531: oll ==> all, ole, old, olly, oil
data/hisat2-2.2.1/aligner_sw_driver.h:2541: oll ==> all, ole, old, olly, oil
data/hisat2-2.2.1/aligner_sw_driver.h:2567: initilize ==> initialize
data/hisat2-2.2.1/aligner_sw_nuc.h:182: fo ==> of, for
data/hisat2-2.2.1/aligner_swsse.cpp:27: accomodate ==> accommodate
data/hisat2-2.2.1/aligner_swsse.h:193: accomodate ==> accommodate
data/hisat2-2.2.1/aligner_swsse_ee_i16.cpp:356: implmentation ==> implementation
data/hisat2-2.2.1/aligner_swsse_ee_i16.cpp:822: implmentation ==> implementation
data/hisat2-2.2.1/aligner_swsse_ee_i16.cpp:1347: ned ==> need
data/hisat2-2.2.1/aligner_swsse_ee_i16.cpp:1347: ned ==> need
data/hisat2-2.2.1/aligner_swsse_ee_i16.cpp:1348: ned ==> need
data/hisat2-2.2.1/aligner_swsse_ee_i16.cpp:1442: terimnate ==> terminate
data/hisat2-2.2.1/aligner_swsse_ee_i16.cpp:1500: terimnate ==> terminate
data/hisat2-2.2.1/aligner_swsse_ee_i16.cpp:1584: terimnate ==> terminate
data/hisat2-2.2.1/aligner_swsse_ee_i16.cpp:1594: ned ==> need
data/hisat2-2.2.1/aligner_swsse_ee_i16.cpp:1603: ned ==> need
data/hisat2-2.2.1/aligner_swsse_ee_i16.cpp:1639: ned ==> need
data/hisat2-2.2.1/aligner_swsse_ee_i16.cpp:1672: ned ==> need
data/hisat2-2.2.1/aligner_swsse_ee_i16.cpp:1672: ned ==> need
data/hisat2-2.2.1/aligner_swsse_ee_i16.cpp:1673: ned ==> need
data/hisat2-2.2.1/aligner_swsse_ee_i16.cpp:1701: ned ==> need
data/hisat2-2.2.1/aligner_swsse_ee_i16.cpp:1701: ned ==> need
data/hisat2-2.2.1/aligner_swsse_ee_i16.cpp:1702: ned ==> need
data/hisat2-2.2.1/aligner_swsse_ee_i16.cpp:1711: ned ==> need
data/hisat2-2.2.1/aligner_swsse_ee_i16.cpp:1726: ned ==> need
data/hisat2-2.2.1/aligner_swsse_ee_i16.cpp:1726: ned ==> need
data/hisat2-2.2.1/aligner_swsse_ee_i16.cpp:1727: ned ==> need
data/hisat2-2.2.1/aligner_swsse_ee_i16.cpp:1736: ned ==> need
data/hisat2-2.2.1/aligner_swsse_ee_i16.cpp:1750: ned ==> need
data/hisat2-2.2.1/aligner_swsse_ee_i16.cpp:1750: ned ==> need
data/hisat2-2.2.1/aligner_swsse_ee_i16.cpp:1751: ned ==> need
data/hisat2-2.2.1/aligner_swsse_ee_i16.cpp:1760: ned ==> need
data/hisat2-2.2.1/aligner_swsse_ee_i16.cpp:1774: ned ==> need
data/hisat2-2.2.1/aligner_swsse_ee_i16.cpp:1774: ned ==> need
data/hisat2-2.2.1/aligner_swsse_ee_i16.cpp:1775: ned ==> need
data/hisat2-2.2.1/aligner_swsse_ee_i16.cpp:1784: ned ==> need
data/hisat2-2.2.1/aligner_swsse_ee_i16.cpp:1836: ned ==> need
data/hisat2-2.2.1/aligner_swsse_ee_i16.cpp:1836: ned ==> need
data/hisat2-2.2.1/aligner_swsse_ee_i16.cpp:1837: ned ==> need
data/hisat2-2.2.1/aligner_swsse_ee_i16.cpp:1853: ned ==> need
data/hisat2-2.2.1/aligner_swsse_ee_i16.cpp:1880: ned ==> need
data/hisat2-2.2.1/aligner_swsse_ee_i16.cpp:1884: ned ==> need
data/hisat2-2.2.1/aligner_swsse_ee_i16.cpp:1885: ned ==> need
data/hisat2-2.2.1/aligner_swsse_ee_i16.cpp:1894: ned ==> need
data/hisat2-2.2.1/aligner_swsse_ee_i16.cpp:1895: ned ==> need
data/hisat2-2.2.1/aligner_swsse_ee_i16.cpp:1901: ned ==> need
data/hisat2-2.2.1/aligner_swsse_ee_u8.cpp:359: implmentation ==> implementation
data/hisat2-2.2.1/aligner_swsse_ee_u8.cpp:822: implmentation ==> implementation
data/hisat2-2.2.1/aligner_swsse_ee_u8.cpp:1332: ned ==> need
data/hisat2-2.2.1/aligner_swsse_ee_u8.cpp:1332: ned ==> need
data/hisat2-2.2.1/aligner_swsse_ee_u8.cpp:1333: ned ==> need
data/hisat2-2.2.1/aligner_swsse_ee_u8.cpp:1427: terimnate ==> terminate
data/hisat2-2.2.1/aligner_swsse_ee_u8.cpp:1485: terimnate ==> terminate
data/hisat2-2.2.1/aligner_swsse_ee_u8.cpp:1569: terimnate ==> terminate
data/hisat2-2.2.1/aligner_swsse_ee_u8.cpp:1580: ned ==> need
data/hisat2-2.2.1/aligner_swsse_ee_u8.cpp:1589: ned ==> need
data/hisat2-2.2.1/aligner_swsse_ee_u8.cpp:1626: ned ==> need
data/hisat2-2.2.1/aligner_swsse_ee_u8.cpp:1659: ned ==> need
data/hisat2-2.2.1/aligner_swsse_ee_u8.cpp:1659: ned ==> need
data/hisat2-2.2.1/aligner_swsse_ee_u8.cpp:1660: ned ==> need
data/hisat2-2.2.1/aligner_swsse_ee_u8.cpp:1688: ned ==> need
data/hisat2-2.2.1/aligner_swsse_ee_u8.cpp:1688: ned ==> need
data/hisat2-2.2.1/aligner_swsse_ee_u8.cpp:1689: ned ==> need
data/hisat2-2.2.1/aligner_swsse_ee_u8.cpp:1698: ned ==> need
data/hisat2-2.2.1/aligner_swsse_ee_u8.cpp:1713: ned ==> need
data/hisat2-2.2.1/aligner_swsse_ee_u8.cpp:1713: ned ==> need
data/hisat2-2.2.1/aligner_swsse_ee_u8.cpp:1714: ned ==> need
data/hisat2-2.2.1/aligner_swsse_ee_u8.cpp:1723: ned ==> need
data/hisat2-2.2.1/aligner_swsse_ee_u8.cpp:1737: ned ==> need
data/hisat2-2.2.1/aligner_swsse_ee_u8.cpp:1737: ned ==> need
data/hisat2-2.2.1/aligner_swsse_ee_u8.cpp:1738: ned ==> need
data/hisat2-2.2.1/aligner_swsse_ee_u8.cpp:1747: ned ==> need
data/hisat2-2.2.1/aligner_swsse_ee_u8.cpp:1761: ned ==> need
data/hisat2-2.2.1/aligner_swsse_ee_u8.cpp:1761: ned ==> need
data/hisat2-2.2.1/aligner_swsse_ee_u8.cpp:1762: ned ==> need
data/hisat2-2.2.1/aligner_swsse_ee_u8.cpp:1771: ned ==> need
data/hisat2-2.2.1/aligner_swsse_ee_u8.cpp:1827: ned ==> need
data/hisat2-2.2.1/aligner_swsse_ee_u8.cpp:1827: ned ==> need
data/hisat2-2.2.1/aligner_swsse_ee_u8.cpp:1828: ned ==> need
data/hisat2-2.2.1/aligner_swsse_ee_u8.cpp:1844: ned ==> need
data/hisat2-2.2.1/aligner_swsse_ee_u8.cpp:1871: ned ==> need
data/hisat2-2.2.1/aligner_swsse_ee_u8.cpp:1875: ned ==> need
data/hisat2-2.2.1/aligner_swsse_ee_u8.cpp:1876: ned ==> need
data/hisat2-2.2.1/aligner_swsse_ee_u8.cpp:1885: ned ==> need
data/hisat2-2.2.1/aligner_swsse_ee_u8.cpp:1886: ned ==> need
data/hisat2-2.2.1/aligner_swsse_ee_u8.cpp:1892: ned ==> need
data/hisat2-2.2.1/aligner_swsse_loc_i16.cpp:356: implmentation ==> implementation
data/hisat2-2.2.1/aligner_swsse_loc_i16.cpp:996: implmentation ==> implementation
data/hisat2-2.2.1/aligner_swsse_loc_i16.cpp:1693: ned ==> need
data/hisat2-2.2.1/aligner_swsse_loc_i16.cpp:1693: ned ==> need
data/hisat2-2.2.1/aligner_swsse_loc_i16.cpp:1694: ned ==> need
data/hisat2-2.2.1/aligner_swsse_loc_i16.cpp:1794: terimnate ==> terminate
data/hisat2-2.2.1/aligner_swsse_loc_i16.cpp:1855: terimnate ==> terminate
data/hisat2-2.2.1/aligner_swsse_loc_i16.cpp:1939: terimnate ==> terminate
data/hisat2-2.2.1/aligner_swsse_loc_i16.cpp:1956: ned ==> need
data/hisat2-2.2.1/aligner_swsse_loc_i16.cpp:1965: ned ==> need
data/hisat2-2.2.1/aligner_swsse_loc_i16.cpp:2001: ned ==> need
data/hisat2-2.2.1/aligner_swsse_loc_i16.cpp:2033: ned ==> need
data/hisat2-2.2.1/aligner_swsse_loc_i16.cpp:2033: ned ==> need
data/hisat2-2.2.1/aligner_swsse_loc_i16.cpp:2034: ned ==> need
data/hisat2-2.2.1/aligner_swsse_loc_i16.cpp:2062: ned ==> need
data/hisat2-2.2.1/aligner_swsse_loc_i16.cpp:2062: ned ==> need
data/hisat2-2.2.1/aligner_swsse_loc_i16.cpp:2063: ned ==> need
data/hisat2-2.2.1/aligner_swsse_loc_i16.cpp:2072: ned ==> need
data/hisat2-2.2.1/aligner_swsse_loc_i16.cpp:2087: ned ==> need
data/hisat2-2.2.1/aligner_swsse_loc_i16.cpp:2087: ned ==> need
data/hisat2-2.2.1/aligner_swsse_loc_i16.cpp:2088: ned ==> need
data/hisat2-2.2.1/aligner_swsse_loc_i16.cpp:2097: ned ==> need
data/hisat2-2.2.1/aligner_swsse_loc_i16.cpp:2111: ned ==> need
data/hisat2-2.2.1/aligner_swsse_loc_i16.cpp:2111: ned ==> need
data/hisat2-2.2.1/aligner_swsse_loc_i16.cpp:2112: ned ==> need
data/hisat2-2.2.1/aligner_swsse_loc_i16.cpp:2121: ned ==> need
data/hisat2-2.2.1/aligner_swsse_loc_i16.cpp:2135: ned ==> need
data/hisat2-2.2.1/aligner_swsse_loc_i16.cpp:2135: ned ==> need
data/hisat2-2.2.1/aligner_swsse_loc_i16.cpp:2136: ned ==> need
data/hisat2-2.2.1/aligner_swsse_loc_i16.cpp:2145: ned ==> need
data/hisat2-2.2.1/aligner_swsse_loc_i16.cpp:2199: ned ==> need
data/hisat2-2.2.1/aligner_swsse_loc_i16.cpp:2199: ned ==> need
data/hisat2-2.2.1/aligner_swsse_loc_i16.cpp:2200: ned ==> need
data/hisat2-2.2.1/aligner_swsse_loc_i16.cpp:2216: ned ==> need
data/hisat2-2.2.1/aligner_swsse_loc_i16.cpp:2243: ned ==> need
data/hisat2-2.2.1/aligner_swsse_loc_i16.cpp:2247: ned ==> need
data/hisat2-2.2.1/aligner_swsse_loc_i16.cpp:2248: ned ==> need
data/hisat2-2.2.1/aligner_swsse_loc_i16.cpp:2256: ned ==> need
data/hisat2-2.2.1/aligner_swsse_loc_i16.cpp:2262: ned ==> need
data/hisat2-2.2.1/aligner_swsse_loc_u8.cpp:369: implmentation ==> implementation
data/hisat2-2.2.1/aligner_swsse_loc_u8.cpp:1005: implmentation ==> implementation
data/hisat2-2.2.1/aligner_swsse_loc_u8.cpp:1702: ned ==> need
data/hisat2-2.2.1/aligner_swsse_loc_u8.cpp:1702: ned ==> need
data/hisat2-2.2.1/aligner_swsse_loc_u8.cpp:1703: ned ==> need
data/hisat2-2.2.1/aligner_swsse_loc_u8.cpp:1797: terimnate ==> terminate
data/hisat2-2.2.1/aligner_swsse_loc_u8.cpp:1855: terimnate ==> terminate
data/hisat2-2.2.1/aligner_swsse_loc_u8.cpp:1939: terimnate ==> terminate
data/hisat2-2.2.1/aligner_swsse_loc_u8.cpp:1949: ned ==> need
data/hisat2-2.2.1/aligner_swsse_loc_u8.cpp:1958: ned ==> need
data/hisat2-2.2.1/aligner_swsse_loc_u8.cpp:1994: ned ==> need
data/hisat2-2.2.1/aligner_swsse_loc_u8.cpp:2027: ned ==> need
data/hisat2-2.2.1/aligner_swsse_loc_u8.cpp:2027: ned ==> need
data/hisat2-2.2.1/aligner_swsse_loc_u8.cpp:2028: ned ==> need
data/hisat2-2.2.1/aligner_swsse_loc_u8.cpp:2056: ned ==> need
data/hisat2-2.2.1/aligner_swsse_loc_u8.cpp:2056: ned ==> need
data/hisat2-2.2.1/aligner_swsse_loc_u8.cpp:2057: ned ==> need
data/hisat2-2.2.1/aligner_swsse_loc_u8.cpp:2066: ned ==> need
data/hisat2-2.2.1/aligner_swsse_loc_u8.cpp:2081: ned ==> need
data/hisat2-2.2.1/aligner_swsse_loc_u8.cpp:2081: ned ==> need
data/hisat2-2.2.1/aligner_swsse_loc_u8.cpp:2082: ned ==> need
data/hisat2-2.2.1/aligner_swsse_loc_u8.cpp:2091: ned ==> need
data/hisat2-2.2.1/aligner_swsse_loc_u8.cpp:2105: ned ==> need
data/hisat2-2.2.1/aligner_swsse_loc_u8.cpp:2105: ned ==> need
data/hisat2-2.2.1/aligner_swsse_loc_u8.cpp:2106: ned ==> need
data/hisat2-2.2.1/aligner_swsse_loc_u8.cpp:2115: ned ==> need
data/hisat2-2.2.1/aligner_swsse_loc_u8.cpp:2129: ned ==> need
data/hisat2-2.2.1/aligner_swsse_loc_u8.cpp:2129: ned ==> need
data/hisat2-2.2.1/aligner_swsse_loc_u8.cpp:2130: ned ==> need
data/hisat2-2.2.1/aligner_swsse_loc_u8.cpp:2139: ned ==> need
data/hisat2-2.2.1/aligner_swsse_loc_u8.cpp:2193: ned ==> need
data/hisat2-2.2.1/aligner_swsse_loc_u8.cpp:2193: ned ==> need
data/hisat2-2.2.1/aligner_swsse_loc_u8.cpp:2194: ned ==> need
data/hisat2-2.2.1/aligner_swsse_loc_u8.cpp:2210: ned ==> need
data/hisat2-2.2.1/aligner_swsse_loc_u8.cpp:2237: ned ==> need
data/hisat2-2.2.1/aligner_swsse_loc_u8.cpp:2241: ned ==> need
data/hisat2-2.2.1/aligner_swsse_loc_u8.cpp:2242: ned ==> need
data/hisat2-2.2.1/aligner_swsse_loc_u8.cpp:2250: ned ==> need
data/hisat2-2.2.1/aligner_swsse_loc_u8.cpp:2256: ned ==> need
data/hisat2-2.2.1/aln_sink.cpp:281: non-existant ==> non-existent
data/hisat2-2.2.1/aln_sink.h:1007: aligments ==> alignments
data/hisat2-2.2.1/blockwise_sa.h:1049: iten ==> item
data/hisat2-2.2.1/blockwise_sa.h:1049: iten ==> item
data/hisat2-2.2.1/blockwise_sa.h:1049: iten ==> item
data/hisat2-2.2.1/blockwise_sa.h:1050: iten ==> item
data/hisat2-2.2.1/blockwise_sa.h:1055: iten ==> item
data/hisat2-2.2.1/bp_aligner.h:56: funcion ==> function
data/hisat2-2.2.1/diff_sample.h:252: ist ==> is, it, its, it's, sit, list
data/hisat2-2.2.1/dp_framer.cpp:464: calcualted ==> calculated
data/hisat2-2.2.1/ds.h:369: allocat ==> allocate
data/hisat2-2.2.1/ds.h:496: intialization ==> initialization
data/hisat2-2.2.1/ds.h:505: intialization ==> initialization
data/hisat2-2.2.1/ds.h:516: intialization ==> initialization
data/hisat2-2.2.1/ds.h:1168: intialization ==> initialization
data/hisat2-2.2.1/ds.h:1506: intialization ==> initialization
data/hisat2-2.2.1/ds.h:2224: intialization ==> initialization
data/hisat2-2.2.1/ds.h:2924: accomodate ==> accommodate
data/hisat2-2.2.1/fast_mutex.h:139: desitination ==> destination
data/hisat2-2.2.1/fast_mutex.h:141: classs ==> class
data/hisat2-2.2.1/gbwt_graph.h:2216: mergable ==> mergeable
data/hisat2-2.2.1/gbwt_graph.h:2224: mergable ==> mergeable
data/hisat2-2.2.1/gbwt_graph.h:2238: mergable ==> mergeable
data/hisat2-2.2.1/gfm.h:1988: repID ==> rapid
data/hisat2-2.2.1/gfm.h:2007: repID ==> rapid
data/hisat2-2.2.1/gfm.h:2121: repID ==> rapid
data/hisat2-2.2.1/gfm.h:2121: repID ==> rapid
data/hisat2-2.2.1/gfm.h:2140: repID ==> rapid
data/hisat2-2.2.1/gfm.h:2166: repID ==> rapid
data/hisat2-2.2.1/gfm.h:2168: repID ==> rapid
data/hisat2-2.2.1/gfm.h:2169: repID ==> rapid
data/hisat2-2.2.1/gfm.h:2169: repID ==> rapid
data/hisat2-2.2.1/gfm.h:2171: repID ==> rapid
data/hisat2-2.2.1/gfm.h:2174: repID ==> rapid
data/hisat2-2.2.1/gfm.h:2184: repID ==> rapid
data/hisat2-2.2.1/gfm.h:2184: repID ==> rapid
data/hisat2-2.2.1/gfm.h:2236: Succesfully ==> Successfully
data/hisat2-2.2.1/gfm.h:3215: occurences ==> occurrences
data/hisat2-2.2.1/gfm.h:3220: occurences ==> occurrences
data/hisat2-2.2.1/gfm.h:3257: occurences ==> occurrences
data/hisat2-2.2.1/gfm.h:3261: occurences ==> occurrences
data/hisat2-2.2.1/gfm.h:3360: occurences ==> occurrences
data/hisat2-2.2.1/gfm.h:3368: occurences ==> occurrences
data/hisat2-2.2.1/gfm.h:3437: occurences ==> occurrences
data/hisat2-2.2.1/gfm.h:3442: occurences ==> occurrences
data/hisat2-2.2.1/gfm.h:3740: bloc ==> block
data/hisat2-2.2.1/gfm.h:3748: bloc ==> block
data/hisat2-2.2.1/gfm.h:3760: bloc ==> block
data/hisat2-2.2.1/gfm.h:3770: bloc ==> block
data/hisat2-2.2.1/gfm.h:3809: bloc ==> block
data/hisat2-2.2.1/gfm.h:3810: bloc ==> block
data/hisat2-2.2.1/gfm.h:3812: bloc ==> block
data/hisat2-2.2.1/gfm.h:3819: bloc ==> block
data/hisat2-2.2.1/gfm.h:3822: bloc ==> block
data/hisat2-2.2.1/gfm.h:4457: auxilliary ==> auxiliary
data/hisat2-2.2.1/gfm.h:4487: auxilliary ==> auxiliary
data/hisat2-2.2.1/gfm.h:4558: auxilliary ==> auxiliary
data/hisat2-2.2.1/gfm.h:5003: bloc ==> block
data/hisat2-2.2.1/gfm.h:5004: bloc ==> block
data/hisat2-2.2.1/gfm.h:5008: bloc ==> block
data/hisat2-2.2.1/gfm.h:5009: bloc ==> block
data/hisat2-2.2.1/gfm.h:5018: bloc ==> block
data/hisat2-2.2.1/gfm.h:5020: bloc ==> block
data/hisat2-2.2.1/gfm.h:5752: bloc ==> block
data/hisat2-2.2.1/gfm.h:5779: bloc ==> block
data/hisat2-2.2.1/gfm.h:5786: bloc ==> block
data/hisat2-2.2.1/gfm.h:5790: bloc ==> block
data/hisat2-2.2.1/gfm.h:5804: bloc ==> block
data/hisat2-2.2.1/group_walk.h:576: refernce ==> reference
data/hisat2-2.2.1/group_walk.h:876: bloc ==> block
data/hisat2-2.2.1/group_walk.h:878: bloc ==> block
data/hisat2-2.2.1/group_walk.h:878: bloc ==> block
data/hisat2-2.2.1/group_walk.h:882: bloc ==> block
data/hisat2-2.2.1/group_walk.h:898: bloc ==> block
data/hisat2-2.2.1/group_walk.h:898: bloc ==> block
data/hisat2-2.2.1/group_walk.h:1090: upto ==> up to
data/hisat2-2.2.1/group_walk.h:1091: upto ==> up to
data/hisat2-2.2.1/group_walk.h:1091: upto ==> up to
data/hisat2-2.2.1/group_walk.h:1092: upto ==> up to
data/hisat2-2.2.1/group_walk.h:1092: upto ==> up to
data/hisat2-2.2.1/group_walk.h:1093: bloc ==> block
data/hisat2-2.2.1/group_walk.h:1105: upto ==> up to
data/hisat2-2.2.1/group_walk.h:1346: bloc ==> block
data/hisat2-2.2.1/group_walk.h:1387: bloc ==> block
data/hisat2-2.2.1/hgfm.h:634: bloc ==> block
data/hisat2-2.2.1/hgfm.h:635: bloc ==> block
data/hisat2-2.2.1/hgfm.h:639: bloc ==> block
data/hisat2-2.2.1/hgfm.h:640: bloc ==> block
data/hisat2-2.2.1/hgfm.h:649: bloc ==> block
data/hisat2-2.2.1/hgfm.h:651: bloc ==> block
data/hisat2-2.2.1/hi_aligner.h:4045: funcion ==> function
data/hisat2-2.2.1/hi_aligner.h:4697: alignemnt ==> alignment
data/hisat2-2.2.1/hi_aligner.h:5210: repID ==> rapid
data/hisat2-2.2.1/hi_aligner.h:5240: repID ==> rapid
data/hisat2-2.2.1/hi_aligner.h:5251: repID ==> rapid
data/hisat2-2.2.1/hi_aligner.h:5453: bloc ==> block
data/hisat2-2.2.1/hi_aligner.h:5456: bloc ==> block
data/hisat2-2.2.1/hi_aligner.h:5458: bloc ==> block
data/hisat2-2.2.1/hi_aligner.h:5459: bloc ==> block
data/hisat2-2.2.1/hi_aligner.h:5469: bloc ==> block
data/hisat2-2.2.1/hi_aligner.h:5472: bloc ==> block
data/hisat2-2.2.1/hi_aligner.h:5474: bloc ==> block
data/hisat2-2.2.1/hi_aligner.h:5475: bloc ==> block
data/hisat2-2.2.1/hi_aligner.h:6326: ned ==> need
data/hisat2-2.2.1/hi_aligner.h:6380: bloc ==> block
data/hisat2-2.2.1/hi_aligner.h:6457: bloc ==> block
data/hisat2-2.2.1/hi_aligner.h:6466: bloc ==> block
data/hisat2-2.2.1/hi_aligner.h:6469: bloc ==> block
data/hisat2-2.2.1/hi_aligner.h:6471: bloc ==> block
data/hisat2-2.2.1/hi_aligner.h:6538: bloc ==> block
data/hisat2-2.2.1/hi_aligner.h:6627: bloc ==> block
data/hisat2-2.2.1/hi_aligner.h:6666: bloc ==> block
data/hisat2-2.2.1/hi_aligner.h:6675: bloc ==> block
data/hisat2-2.2.1/hi_aligner.h:6678: bloc ==> block
data/hisat2-2.2.1/hi_aligner.h:6680: bloc ==> block
data/hisat2-2.2.1/hi_aligner.h:6715: bloc ==> block
data/hisat2-2.2.1/hi_aligner.h:6775: bloc ==> block
data/hisat2-2.2.1/hi_aligner.h:6812: bloc ==> block
data/hisat2-2.2.1/hi_aligner.h:6821: bloc ==> block
data/hisat2-2.2.1/hi_aligner.h:6824: bloc ==> block
data/hisat2-2.2.1/hi_aligner.h:6826: bloc ==> block
data/hisat2-2.2.1/hi_aligner.h:6862: bloc ==> block
data/hisat2-2.2.1/hisat2.cpp:84: maching ==> machine, marching, matching
data/hisat2-2.2.1/hisat2.cpp:210: cacheing ==> caching
data/hisat2-2.2.1/hisat2.cpp:211: cacheing ==> caching
data/hisat2-2.2.1/hisat2.cpp:212: cacheing ==> caching
data/hisat2-2.2.1/hisat2.cpp:325: maching ==> machine, marching, matching
data/hisat2-2.2.1/hisat2.cpp:452: cacheing ==> caching
data/hisat2-2.2.1/hisat2.cpp:453: cacheing ==> caching
data/hisat2-2.2.1/hisat2.cpp:454: cacheing ==> caching
data/hisat2-2.2.1/hisat2.cpp:565: upto ==> up to
data/hisat2-2.2.1/hisat2.cpp:2651: succesful ==> successful
data/hisat2-2.2.1/hisat2.cpp:2714: succesful ==> successful
data/hisat2-2.2.1/hisat2.cpp:2777: succesful ==> successful
data/hisat2-2.2.1/hisat2.cpp:2840: succesful ==> successful
data/hisat2-2.2.1/hisat2.cpp:3443: Calcualte ==> Calculate
data/hisat2-2.2.1/hisat2.cpp:3912: penalities ==> penalties
data/hisat2-2.2.1/hisat2_build.cpp:94: multplier ==> multiplier
data/hisat2-2.2.1/hisat2_build.cpp:564: refence ==> reference
data/hisat2-2.2.1/hisat2_build.cpp:600: refence ==> reference
data/hisat2-2.2.1/hisat2_read_statistics.py:141: minimun ==> minimum
data/hisat2-2.2.1/hisat2_repeat.cpp:104: multplier ==> multiplier
data/hisat2-2.2.1/hisat_bp.cpp:83: maching ==> machine, marching, matching
data/hisat2-2.2.1/hisat_bp.cpp:206: cacheing ==> caching
data/hisat2-2.2.1/hisat_bp.cpp:207: cacheing ==> caching
data/hisat2-2.2.1/hisat_bp.cpp:208: cacheing ==> caching
data/hisat2-2.2.1/hisat_bp.cpp:282: maching ==> machine, marching, matching
data/hisat2-2.2.1/hisat_bp.cpp:406: cacheing ==> caching
data/hisat2-2.2.1/hisat_bp.cpp:407: cacheing ==> caching
data/hisat2-2.2.1/hisat_bp.cpp:408: cacheing ==> caching
data/hisat2-2.2.1/hisat_bp.cpp:482: upto ==> up to
data/hisat2-2.2.1/hisat_bp.cpp:2317: succesful ==> successful
data/hisat2-2.2.1/hisat_bp.cpp:2380: succesful ==> successful
data/hisat2-2.2.1/hisat_bp.cpp:2443: succesful ==> successful
data/hisat2-2.2.1/hisat_bp.cpp:2506: succesful ==> successful
data/hisat2-2.2.1/hisat_bp.cpp:3117: Calcualte ==> Calculate
data/hisat2-2.2.1/hisat_bp.cpp:3532: penalities ==> penalties
data/hisat2-2.2.1/multikey_qsort.h:246: paritioning ==> partitioning
data/hisat2-2.2.1/multikey_qsort.h:285: paritioning ==> partitioning
data/hisat2-2.2.1/multikey_qsort.h:327: thare ==> there
data/hisat2-2.2.1/multikey_qsort.h:346: upto ==> up to
data/hisat2-2.2.1/multikey_qsort.h:357: upto ==> up to
data/hisat2-2.2.1/multikey_qsort.h:360: upto ==> up to
data/hisat2-2.2.1/multikey_qsort.h:386: upto ==> up to
data/hisat2-2.2.1/multikey_qsort.h:402: upto ==> up to
data/hisat2-2.2.1/multikey_qsort.h:408: upto ==> up to
data/hisat2-2.2.1/multikey_qsort.h:409: upto ==> up to
data/hisat2-2.2.1/multikey_qsort.h:490: upto ==> up to
data/hisat2-2.2.1/multikey_qsort.h:495: upto ==> up to
data/hisat2-2.2.1/multikey_qsort.h:496: upto ==> up to
data/hisat2-2.2.1/multikey_qsort.h:522: upto ==> up to
data/hisat2-2.2.1/multikey_qsort.h:545: upto ==> up to
data/hisat2-2.2.1/multikey_qsort.h:649: upto ==> up to
data/hisat2-2.2.1/multikey_qsort.h:659: upto ==> up to
data/hisat2-2.2.1/multikey_qsort.h:661: upto ==> up to
data/hisat2-2.2.1/multikey_qsort.h:1127: upto ==> up to
data/hisat2-2.2.1/pat.cpp:76: succesfully ==> successfully
data/hisat2-2.2.1/pat.cpp:1347: upto ==> up to
data/hisat2-2.2.1/pat.cpp:1353: upto ==> up to
data/hisat2-2.2.1/pat.cpp:1363: upto ==> up to
data/hisat2-2.2.1/pat.cpp:1387: upto ==> up to
data/hisat2-2.2.1/pat.cpp:1393: upto ==> up to
data/hisat2-2.2.1/pat.cpp:1397: upto ==> up to
data/hisat2-2.2.1/pat.cpp:1417: upto ==> up to
data/hisat2-2.2.1/pat.cpp:1442: upto ==> up to
data/hisat2-2.2.1/pat.cpp:1450: upto ==> up to
data/hisat2-2.2.1/pat.cpp:1480: upto ==> up to
data/hisat2-2.2.1/pat.cpp:1498: upto ==> up to
data/hisat2-2.2.1/pat.h:171: succesfully ==> successfully
data/hisat2-2.2.1/pat.h:1064: upto ==> up to
data/hisat2-2.2.1/pat.h:1067: upto ==> up to
data/hisat2-2.2.1/pat.h:1073: upto ==> up to
data/hisat2-2.2.1/pat.h:1075: upto ==> up to
data/hisat2-2.2.1/pat.h:1081: upto ==> up to
data/hisat2-2.2.1/pat.h:1084: upto ==> up to
data/hisat2-2.2.1/pat.h:1137: upto ==> up to
data/hisat2-2.2.1/pat.h:1147: upto ==> up to
data/hisat2-2.2.1/pat.h:1153: upto ==> up to
data/hisat2-2.2.1/pat.h:1159: upto ==> up to
data/hisat2-2.2.1/pat.h:1165: upto ==> up to
data/hisat2-2.2.1/pat.h:1173: upto ==> up to
data/hisat2-2.2.1/pe.cpp:49: accomodate ==> accommodate
data/hisat2-2.2.1/pe.cpp:144: cosntraint ==> constraint
data/hisat2-2.2.1/pe.cpp:172: oll ==> all, ole, old, olly, oil
data/hisat2-2.2.1/pe.cpp:192: accomodate ==> accommodate
data/hisat2-2.2.1/pe.cpp:244: oll ==> all, ole, old, olly, oil
data/hisat2-2.2.1/pe.cpp:246: oll ==> all, ole, old, olly, oil
data/hisat2-2.2.1/pe.cpp:248: oll ==> all, ole, old, olly, oil
data/hisat2-2.2.1/pe.cpp:250: oll ==> all, ole, old, olly, oil
data/hisat2-2.2.1/pe.cpp:257: oll ==> all, ole, old, olly, oil
data/hisat2-2.2.1/pe.cpp:265: oll ==> all, ole, old, olly, oil
data/hisat2-2.2.1/pe.cpp:272: oll ==> all, ole, old, olly, oil
data/hisat2-2.2.1/pe.cpp:275: oll ==> all, ole, old, olly, oil
data/hisat2-2.2.1/pe.cpp:278: oll ==> all, ole, old, olly, oil
data/hisat2-2.2.1/pe.cpp:320: oll ==> all, ole, old, olly, oil
data/hisat2-2.2.1/pe.cpp:322: oll ==> all, ole, old, olly, oil
data/hisat2-2.2.1/pe.cpp:327: oll ==> all, ole, old, olly, oil
data/hisat2-2.2.1/pe.cpp:327: oll ==> all, ole, old, olly, oil
data/hisat2-2.2.1/pe.cpp:328: oll ==> all, ole, old, olly, oil
data/hisat2-2.2.1/pe.cpp:328: oll ==> all, ole, old, olly, oil
data/hisat2-2.2.1/pe.cpp:329: oll ==> all, ole, old, olly, oil
data/hisat2-2.2.1/pe.cpp:331: oll ==> all, ole, old, olly, oil
data/hisat2-2.2.1/pe.cpp:336: oll ==> all, ole, old, olly, oil
data/hisat2-2.2.1/pe.cpp:336: oll ==> all, ole, old, olly, oil
data/hisat2-2.2.1/pe.cpp:337: oll ==> all, ole, old, olly, oil
data/hisat2-2.2.1/pe.cpp:343: oll ==> all, ole, old, olly, oil
data/hisat2-2.2.1/pe.cpp:343: oll ==> all, ole, old, olly, oil
data/hisat2-2.2.1/pe.cpp:344: oll ==> all, ole, old, olly, oil
data/hisat2-2.2.1/pe.cpp:347: oll ==> all, ole, old, olly, oil
data/hisat2-2.2.1/pe.cpp:350: oll ==> all, ole, old, olly, oil
data/hisat2-2.2.1/pe.cpp:438: oll ==> all, ole, old, olly, oil
data/hisat2-2.2.1/pe.cpp:450: oll ==> all, ole, old, olly, oil
data/hisat2-2.2.1/pe.cpp:458: oll ==> all, ole, old, olly, oil
data/hisat2-2.2.1/pe.cpp:515: wheter ==> whether
data/hisat2-2.2.1/pe.cpp:571: wheter ==> whether
data/hisat2-2.2.1/pe.cpp:609: wheter ==> whether
data/hisat2-2.2.1/pe.cpp:643: wheter ==> whether
data/hisat2-2.2.1/pe.cpp:669: wheter ==> whether
data/hisat2-2.2.1/pe.cpp:695: wheter ==> whether
data/hisat2-2.2.1/pe.cpp:721: wheter ==> whether
data/hisat2-2.2.1/pe.h:249: oll ==> all, ole, old, olly, oil
data/hisat2-2.2.1/read_qseq.cpp:25: upto ==> up to
data/hisat2-2.2.1/read_qseq.cpp:35: upto ==> up to
data/hisat2-2.2.1/read_qseq.cpp:51: upto ==> up to
data/hisat2-2.2.1/read_qseq.cpp:77: upto ==> up to
data/hisat2-2.2.1/read_qseq.cpp:83: upto ==> up to
data/hisat2-2.2.1/read_qseq.cpp:87: upto ==> up to
data/hisat2-2.2.1/read_qseq.cpp:111: upto ==> up to
data/hisat2-2.2.1/read_qseq.cpp:136: upto ==> up to
data/hisat2-2.2.1/read_qseq.cpp:144: upto ==> up to
data/hisat2-2.2.1/read_qseq.cpp:175: upto ==> up to
data/hisat2-2.2.1/read_qseq.cpp:192: upto ==> up to
data/hisat2-2.2.1/reference.cpp:662: parms ==> params, prams
data/hisat2-2.2.1/reference.cpp:682: parms ==> params, prams
data/hisat2-2.2.1/reference.cpp:697: parms ==> params, prams
data/hisat2-2.2.1/reference.cpp:698: parms ==> params, prams
data/hisat2-2.2.1/reference.cpp:700: parms ==> params, prams
data/hisat2-2.2.1/reference.cpp:701: parms ==> params, prams
data/hisat2-2.2.1/reference.cpp:705: parms ==> params, prams
data/hisat2-2.2.1/reference.cpp:709: parms ==> params, prams
data/hisat2-2.2.1/repeat.h:136: repID ==> rapid
data/hisat2-2.2.1/repeat.h:142: repID ==> rapid
data/hisat2-2.2.1/repeat.h:159: repID ==> rapid
data/hisat2-2.2.1/repeat.h:182: repID ==> rapid
data/hisat2-2.2.1/repeat.h:212: repID ==> rapid
data/hisat2-2.2.1/repeat.h:212: repID ==> rapid
data/hisat2-2.2.1/repeat.h:215: repID ==> rapid
data/hisat2-2.2.1/repeat.h:217: repID ==> rapid
data/hisat2-2.2.1/repeat.h:221: repID ==> rapid
data/hisat2-2.2.1/repeat.h:255: repID ==> rapid
data/hisat2-2.2.1/repeat.h:266: repID ==> rapid
data/hisat2-2.2.1/repeat.h:266: repID ==> rapid
data/hisat2-2.2.1/repeat.h:268: repID ==> rapid
data/hisat2-2.2.1/repeat.h:280: repID ==> rapid
data/hisat2-2.2.1/repeat.h:359: repID ==> rapid
data/hisat2-2.2.1/repeat.h:360: repID ==> rapid
data/hisat2-2.2.1/repeat.h:364: repID ==> rapid
data/hisat2-2.2.1/repeat.h:373: repID ==> rapid
data/hisat2-2.2.1/repeat.h:382: repID ==> rapid
data/hisat2-2.2.1/repeat.h:386: repID ==> rapid
data/hisat2-2.2.1/repeat.h:432: repID ==> rapid
data/hisat2-2.2.1/repeat.h:442: repID ==> rapid
data/hisat2-2.2.1/repeat.h:446: repID ==> rapid
data/hisat2-2.2.1/repeat.h:500: repID ==> rapid
data/hisat2-2.2.1/repeat.h:514: repID ==> rapid
data/hisat2-2.2.1/repeat.h:518: repID ==> rapid
data/hisat2-2.2.1/repeat.h:534: cooresponding ==> corresponding
data/hisat2-2.2.1/repeat_builder.cpp:123: upto ==> up to
data/hisat2-2.2.1/repeat_builder.cpp:130: upto ==> up to
data/hisat2-2.2.1/repeat_builder.cpp:130: upto ==> up to
data/hisat2-2.2.1/repeat_builder.cpp:133: upto ==> up to
data/hisat2-2.2.1/repeat_builder.cpp:3071: ned ==> need
data/hisat2-2.2.1/sam.h:367: referenece ==> reference
data/hisat2-2.2.1/sam.h:562: referenece ==> reference
data/hisat2-2.2.1/sam.h:577: ned ==> need
data/hisat2-2.2.1/sam.h:578: ned ==> need
data/hisat2-2.2.1/sam.h:579: ned ==> need
data/hisat2-2.2.1/sam.h:582: ned ==> need
data/hisat2-2.2.1/sam.h:583: ned ==> need
data/hisat2-2.2.1/sam.h:587: ned ==> need
data/hisat2-2.2.1/sam.h:588: ned ==> need
data/hisat2-2.2.1/sam.h:588: ned ==> need
data/hisat2-2.2.1/sam.h:589: ned ==> need
data/hisat2-2.2.1/sam.h:592: ned ==> need
data/hisat2-2.2.1/sam.h:596: ned ==> need
data/hisat2-2.2.1/sam.h:597: ned ==> need
data/hisat2-2.2.1/sam.h:601: ned ==> need
data/hisat2-2.2.1/sam.h:602: ned ==> need
data/hisat2-2.2.1/sam.h:602: ned ==> need
data/hisat2-2.2.1/sam.h:603: ned ==> need
data/hisat2-2.2.1/sam.h:606: ned ==> need
data/hisat2-2.2.1/sam.h:636: ned ==> need
data/hisat2-2.2.1/sam.h:637: ned ==> need
data/hisat2-2.2.1/sam.h:638: ned ==> need
data/hisat2-2.2.1/sam.h:846: succesful ==> successful
data/hisat2-2.2.1/sam.h:851: succesful ==> successful
data/hisat2-2.2.1/sam.h:987: ned ==> need
data/hisat2-2.2.1/sam.h:989: ned ==> need
data/hisat2-2.2.1/sam.h:990: ned ==> need
data/hisat2-2.2.1/sam.h:992: ned ==> need
data/hisat2-2.2.1/sam.h:1002: ned ==> need
data/hisat2-2.2.1/sam.h:1005: ned ==> need
data/hisat2-2.2.1/sam.h:1006: ned ==> need
data/hisat2-2.2.1/sam.h:1008: ned ==> need
data/hisat2-2.2.1/sam.h:1010: ned ==> need
data/hisat2-2.2.1/sam.h:1012: ned ==> need
data/hisat2-2.2.1/sam.h:1036: ned ==> need
data/hisat2-2.2.1/sam.h:1168: succesful ==> successful
data/hisat2-2.2.1/sam.h:1173: succesful ==> successful
data/hisat2-2.2.1/scoring.cpp:224: als ==> also
data/hisat2-2.2.1/scoring.h:349: penalities ==> penalties
data/hisat2-2.2.1/shmem.h:82: Deleteing ==> Deleting
data/hisat2-2.2.1/shmem.h:120: Deleteing ==> Deleting
data/hisat2-2.2.1/splice_site.cpp:203: ned ==> need
data/hisat2-2.2.1/splice_site_new.cpp:215: ned ==> need
data/hisat2-2.2.1/splice_site_new.cpp:691: ned ==> need
data/hisat2-2.2.1/spliced_aligner.h:278: ned ==> need
data/hisat2-2.2.1/sstring.h:110: upto ==> up to
data/hisat2-2.2.1/sstring.h:116: upto ==> up to
data/hisat2-2.2.1/sstring.h:123: upto ==> up to
data/hisat2-2.2.1/sstring.h:123: upto ==> up to
data/hisat2-2.2.1/sstring.h:124: upto ==> up to
data/hisat2-2.2.1/sstring.h:124: upto ==> up to
data/hisat2-2.2.1/sstring.h:136: upto ==> up to
data/hisat2-2.2.1/sstring.h:142: upto ==> up to
data/hisat2-2.2.1/sstring.h:145: upto ==> up to
data/hisat2-2.2.1/sstring.h:220: upto ==> up to
data/hisat2-2.2.1/sstring.h:226: upto ==> up to
data/hisat2-2.2.1/sstring.h:233: upto ==> up to
data/hisat2-2.2.1/sstring.h:233: upto ==> up to
data/hisat2-2.2.1/sstring.h:234: upto ==> up to
data/hisat2-2.2.1/sstring.h:234: upto ==> up to
data/hisat2-2.2.1/aligner_sw.h:270: referece ==> reference
data/hisat2-2.2.1/aligner_sw.h:294: upto ==> up to
data/hisat2-2.2.1/aligner_sw.h:299: referece ==> reference
data/hisat2-2.2.1/hisat2-build:31: programm ==> program, programme
data/hisat2-2.2.1/hisat2-build-new:31: programm ==> program, programme
data/hisat2-2.2.1/hisat2_simulate_reads.py:361: Retreive ==> Retrieve
data/hisat2-2.2.1/docs/_config.yml:117: rouge ==> rogue
data/hisat2-2.2.1/docs/_pages/hisat2.md:123: documention ==> documentation
data/hisat2-2.2.1/docs/_posts/2000-01-01-kim.md:8: layed ==> laid
data/hisat2-2.2.1/docs_jhu/index.shtml:129: documention ==> documentation
data/hisat2-2.2.1/evaluation/simulation/calculate_read_cost.py:802: consier ==> consider
data/hisat2-2.2.1/evaluation/tests/HLA_novel/hisatgenotype_locus_prev.py:717: ambigious ==> ambiguous
data/hisat2-2.2.1/evaluation/tests/HLA_novel/hisatgenotype_locus_prev.py:1439: representives ==> representatives
data/hisat2-2.2.1/evaluation/tests/HLA_novel/hisatgenotype_locus_prev.py:2294: Asssembly ==> Assembly
data/hisat2-2.2.1/evaluation/tests/HLA_novel/hisatgenotype_locus_prev.py:2700: sequeces ==> sequences
data/hisat2-2.2.1/evaluation/tests/genotype_genome/hisatgenotype_prev.py:107: sequeces ==> sequences
data/hisat2-2.2.1/hisat2lib/ht2.h:90: relese ==> release
data/hisat2-2.2.1/hisat2lib/ht2_repeat.cpp:39: repID ==> rapid
data/hisat2-2.2.1/hisat2lib/java_jni/ht2module.c:245: Initailzed ==> Initialized
data/hisat2-2.2.1/li_hla/main.cpp:266: compatbility ==> compatibility
data/hisat2-2.2.1/li_hla/main.cpp:332: penality ==> penalty
data/hisat2-2.2.1/scripts/infer_fraglen.pl:42: upto ==> up to
data/hisat2-2.2.1/scripts/infer_fraglen.pl:71: upto ==> up to
data/hisat2-2.2.1/scripts/infer_fraglen.pl:71: upto ==> up to
data/hisat2-2.2.1/scripts/sim/AlignmentCheck.pm:235: ned ==> need
data/hisat2-2.2.1/scripts/sim/AlignmentCheck.pm:236: ned ==> need
data/hisat2-2.2.1/scripts/sim/AlignmentCheck.pm:237: ned ==> need
data/hisat2-2.2.1/scripts/sim/AlignmentCheck.pm:429: alread ==> already
data/hisat2-2.2.1/scripts/sim/AlignmentCheck.pm:463: alread ==> already
data/hisat2-2.2.1/scripts/sim/AlignmentCheck.pm:471: alread ==> already
data/hisat2-2.2.1/scripts/sim/AlignmentCheck.pm:483: alread ==> already
data/hisat2-2.2.1/scripts/sim/AlignmentCheck.pm:492: alread ==> already
data/hisat2-2.2.1/scripts/sim/AlignmentCheck.pm:500: alread ==> already
data/hisat2-2.2.1/scripts/sim/AlignmentCheck.pm:526: ned ==> need
data/hisat2-2.2.1/scripts/sim/AlignmentCheck.pm:527: ned ==> need
data/hisat2-2.2.1/scripts/sim/AlignmentCheck.pm:533: ned ==> need
data/hisat2-2.2.1/scripts/sim/AlignmentCheck.pm:533: ned ==> need
data/hisat2-2.2.1/scripts/sim/AlignmentCheck.pm:535: ned ==> need
data/hisat2-2.2.1/scripts/sim/AlignmentCheck.pm:535: ned ==> need
data/hisat2-2.2.1/scripts/sim/AlignmentCheck.pm:550: Referemce ==> Reference
data/hisat2-2.2.1/scripts/sim/AlignmentCheck.pm:551: referemce ==> reference
data/hisat2-2.2.1/scripts/sim/AlignmentCheck.pm:562: Referemce ==> Reference
data/hisat2-2.2.1/scripts/sim/AlignmentCheck.pm:563: referemce ==> reference
data/hisat2-2.2.1/scripts/sim/AlignmentCheck.pm:654: alread ==> already
data/hisat2-2.2.1/scripts/sim/AlignmentCheck.pm:656: alread ==> already
data/hisat2-2.2.1/scripts/sim/AlignmentCheck.pm:751: als ==> also
data/hisat2-2.2.1/scripts/sim/AlignmentCheck.pm:756: als ==> also
data/hisat2-2.2.1/scripts/sim/AlignmentCheck.pm:766: als ==> also
data/hisat2-2.2.1/scripts/sim/AlignmentCheck.pm:776: als ==> also
data/hisat2-2.2.1/scripts/sim/AlignmentCheck.pm:824: als ==> also
data/hisat2-2.2.1/scripts/sim/AlignmentCheck.pm:834: als ==> also
data/hisat2-2.2.1/scripts/sim/AlignmentCheck.pm:834: als ==> also
data/hisat2-2.2.1/scripts/sim/AlignmentCheck.pm:856: als ==> also
data/hisat2-2.2.1/scripts/sim/Sim.pm:772: sqaure ==> square
data/hisat2-2.2.1/scripts/sim/Sim.pm:898: als ==> also
data/hisat2-2.2.1/scripts/sim/Sim.pm:898: als ==> also
data/hisat2-2.2.1/scripts/sim/Sim.pm:899: als ==> also
data/hisat2-2.2.1/scripts/sim/Sim.pm:900: als ==> also
data/hisat2-2.2.1/scripts/sim/Sim.pm:901: reord ==> record
data/hisat2-2.2.1/scripts/sim/Sim.pm:901: als ==> also
data/hisat2-2.2.1/scripts/sim/Sim.pm:926: als ==> also
data/hisat2-2.2.1/scripts/sim/Sim.pm:931: als ==> also
data/hisat2-2.2.1/scripts/test/simple_tests.pl:4363: formate ==> format
data/hisat2-2.2.1/debian/control:31: implementd ==> implemented
data/hisat2-2.2.1/debian/control:52: implementd ==> implemented
data/hisat2-2.2.1/.pc/simde/aligner_sw.h:269: referece ==> reference
data/hisat2-2.2.1/.pc/simde/aligner_sw.h:293: upto ==> up to
data/hisat2-2.2.1/.pc/simde/aligner_sw.h:298: referece ==> reference
data/hisat2-2.2.1/.pc/python3/hisat2-build:31: programm ==> program, programme
data/hisat2-2.2.1/.pc/python3/hisat2-build-new:31: programm ==> program, programme
data/hisat2-2.2.1/.pc/python3/hisat2_simulate_reads.py:361: Retreive ==> Retrieve
data/hisat2-2.2.1/.pc/python3/evaluation/simulation/calculate_read_cost.py:802: consier ==> consider
data/hisat2-2.2.1/.pc/python3/evaluation/tests/HLA_novel/hisatgenotype_locus_prev.py:717: ambigious ==> ambiguous
data/hisat2-2.2.1/.pc/python3/evaluation/tests/HLA_novel/hisatgenotype_locus_prev.py:1439: representives ==> representatives
data/hisat2-2.2.1/.pc/python3/evaluation/tests/HLA_novel/hisatgenotype_locus_prev.py:2294: Asssembly ==> Assembly
data/hisat2-2.2.1/.pc/python3/evaluation/tests/HLA_novel/hisatgenotype_locus_prev.py:2700: sequeces ==> sequences
data/hisat2-2.2.1/.pc/python3/evaluation/tests/genotype_genome/hisatgenotype_prev.py:107: sequeces ==> sequences