data/infernal-1.1.3/config.sub:743: msdos ==> ms-dos
data/infernal-1.1.3/LICENSE:13: Massachussetts ==> Massachusetts
data/infernal-1.1.3/config.guess:355: Ake ==> Ache
data/infernal-1.1.3/documentation/manpages/cmbuild.man:120: annoted ==> annotated
data/infernal-1.1.3/documentation/manpages/cmsearch.man:321: heursitics ==> heuristics
data/infernal-1.1.3/documentation/manpages/cmsearch_dual.man:70: unecessary ==> unnecessary
data/infernal-1.1.3/documentation/manpages/cmsearch_dual.man:92: unecessary ==> unnecessary
data/infernal-1.1.3/documentation/manpages/cmalign.man:232: probabilites ==> probabilities
data/infernal-1.1.3/documentation/manpages/cmscan.man:348: heursitics ==> heuristics
data/infernal-1.1.3/documentation/userguide/formats.tex:20: ALPH ==> ALPHA
data/infernal-1.1.3/documentation/userguide/formats.tex:70: ALPH ==> ALPHA
data/infernal-1.1.3/documentation/userguide/formats.tex:185: ALPH ==> ALPHA
data/infernal-1.1.3/documentation/userguide/formats.tex:609: ALPH ==> ALPHA
data/infernal-1.1.3/documentation/userguide/formats.tex:1292: accomodate ==> accommodate
data/infernal-1.1.3/documentation/userguide/introduction.tex:85: intereseted ==> interested
data/infernal-1.1.3/documentation/userguide/introduction.tex:240: theses ==> these, thesis
data/infernal-1.1.3/documentation/userguide/pipeline.tex:14: excecuted ==> executed
data/infernal-1.1.3/documentation/userguide/pipeline.tex:106: Aligments ==> Alignments
data/infernal-1.1.3/documentation/userguide/pipeline.tex:124: signficant ==> significant
data/infernal-1.1.3/documentation/userguide/pipeline.tex:595: intial ==> initial
data/infernal-1.1.3/documentation/userguide/pipeline.tex:961: occurence ==> occurrence
data/infernal-1.1.3/documentation/userguide/pipeline.tex:988: analagous ==> analogous
data/infernal-1.1.3/documentation/userguide/pipeline.tex:1300: accomodate ==> accommodate
data/infernal-1.1.3/documentation/userguide/url.sty:206: desireable ==> desirable
data/infernal-1.1.3/documentation/userguide/tutorial.tex:420: parantheses ==> parentheses
data/infernal-1.1.3/documentation/userguide/tutorial.tex:503: propogated ==> propagated
data/infernal-1.1.3/documentation/userguide/tutorial.tex:717: agains ==> against, again
data/infernal-1.1.3/documentation/userguide/tutorial.tex:1431: accomodate ==> accommodate
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-bsu-alignment.eps:49: nd ==> and, 2nd
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-bsu-alignment.eps:225: nd ==> and, 2nd
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-bsu-alignment.eps:226: nd ==> and, 2nd
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-bsu-alignment.eps:260: nd ==> and, 2nd
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-bsu-alignment.eps:261: nd ==> and, 2nd
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-bsu-alignment.eps:390: nd ==> and, 2nd
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-bsu-alignment.eps:396: nd ==> and, 2nd
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-bsu-alignment.eps:397: nd ==> and, 2nd
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-bsu-alignment.eps:405: nd ==> and, 2nd
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-bsu-alignment.eps:406: nd ==> and, 2nd
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-bsu-alignment.eps:407: nd ==> and, 2nd
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-bsu-alignment.eps:408: nd ==> and, 2nd
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-bsu-alignment.eps:409: nd ==> and, 2nd
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-bsu-alignment.eps:410: nd ==> and, 2nd
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-bsu-alignment.eps:411: nd ==> and, 2nd
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-bsu-alignment.eps:412: nd ==> and, 2nd
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-bsu-alignment.eps:413: nd ==> and, 2nd
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-bsu-alignment.eps:414: nd ==> and, 2nd
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-bsu-alignment.eps:415: nd ==> and, 2nd
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-bsu-alignment.eps:416: nd ==> and, 2nd
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-bsu-alignment.eps:417: nd ==> and, 2nd
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-bsu-alignment.eps:418: nd ==> and, 2nd
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-bsu-alignment.eps:419: nd ==> and, 2nd
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-bsu-alignment.eps:420: nd ==> and, 2nd
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-bsu-alignment.eps:421: nd ==> and, 2nd
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-bsu-alignment.eps:424: nd ==> and, 2nd
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-bsu-alignment.eps:429: nd ==> and, 2nd
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-bsu-alignment.eps:430: nd ==> and, 2nd
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-bsu-alignment.eps:431: nd ==> and, 2nd
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-bsu-alignment.eps:432: nd ==> and, 2nd
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-bsu-alignment.eps:434: nd ==> and, 2nd
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-bsu-alignment.eps:435: nd ==> and, 2nd
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-bsu-alignment.eps:438: nd ==> and, 2nd
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-bsu-alignment.eps:439: nd ==> and, 2nd
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-bsu-alignment.eps:440: nd ==> and, 2nd
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-bsu-alignment.eps:443: nd ==> and, 2nd
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-bsu-alignment.eps:2442: nd ==> and, 2nd
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-bsu-alignment.eps:2445: nd ==> and, 2nd
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-bsu-alignment.eps:2446: nd ==> and, 2nd
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-bsu-alignment.eps:2448: nd ==> and, 2nd
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-bsu-alignment.eps:2449: nd ==> and, 2nd
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-bsu-alignment.eps:2457: nd ==> and, 2nd
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-bsu-alignment.eps:2458: nd ==> and, 2nd
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-bsu-alignment.eps:2459: nd ==> and, 2nd
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-bsu-alignment.eps:2460: nd ==> and, 2nd
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-bsu-alignment.eps:2461: nd ==> and, 2nd
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-bsu-alignment.eps:2462: nd ==> and, 2nd
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-bsu-alignment.eps:2463: nd ==> and, 2nd
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-bsu-alignment.eps:2464: nd ==> and, 2nd
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-bsu-alignment.eps:2465: nd ==> and, 2nd
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-bsu-alignment.eps:2466: nd ==> and, 2nd
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-bsu-alignment.eps:2467: nd ==> and, 2nd
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-bsu-alignment.eps:2468: nd ==> and, 2nd
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-bsu-alignment.eps:2469: nd ==> and, 2nd
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-bsu-alignment.eps:2470: nd ==> and, 2nd
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-bsu-alignment.eps:2471: nd ==> and, 2nd
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-bsu-alignment.eps:2472: nd ==> and, 2nd
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-bsu-alignment.eps:2473: nd ==> and, 2nd
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-bsu-alignment.eps:3383: ND ==> AND, 2ND
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-bsu-alignment.eps:3388: ND ==> AND, 2ND
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-bsu-alignment.eps:3390: ND ==> AND, 2ND
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-bsu-alignment.eps:3394: ND ==> AND, 2ND
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-bsu-alignment.eps:3402: ND ==> AND, 2ND
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-bsu-alignment.eps:3412: ND ==> AND, 2ND
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-bsu-alignment.eps:3417: ND ==> AND, 2ND
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-bsu-alignment.eps:3421: ND ==> AND, 2ND
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-bsu-alignment.eps:3427: ND ==> AND, 2ND
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-bsu-alignment.eps:3433: ND ==> AND, 2ND
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-bsu-alignment.eps:3441: ND ==> AND, 2ND
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-bsu-alignment.eps:3447: ND ==> AND, 2ND
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-bsu-alignment.eps:3453: ND ==> AND, 2ND
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-bsu-alignment.eps:3459: ND ==> AND, 2ND
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-bsu-alignment.eps:3463: ND ==> AND, 2ND
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-bsu-alignment.eps:3466: ND ==> AND, 2ND
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-bsu-alignment.eps:3472: ND ==> AND, 2ND
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-bsu-alignment.eps:3478: ND ==> AND, 2ND
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-bsu-alignment.eps:3485: ND ==> AND, 2ND
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-bsu-alignment.eps:3491: ND ==> AND, 2ND
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-bsu-alignment.eps:3549: ND ==> AND, 2ND
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-bsu-alignment.eps:3554: ND ==> AND, 2ND
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-bsu-alignment.eps:3556: ND ==> AND, 2ND
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-bsu-alignment.eps:3564: ND ==> AND, 2ND
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-bsu-alignment.eps:3572: ND ==> AND, 2ND
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-bsu-alignment.eps:3578: ND ==> AND, 2ND
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-bsu-alignment.eps:3584: ND ==> AND, 2ND
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-bsu-alignment.eps:3589: ND ==> AND, 2ND
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-bsu-alignment.eps:3593: ND ==> AND, 2ND
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-bsu-alignment.eps:3600: ND ==> AND, 2ND
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-bsu-alignment.eps:3604: ND ==> AND, 2ND
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-bsu-alignment.eps:3610: ND ==> AND, 2ND
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-bsu-alignment.eps:3662: ND ==> AND, 2ND
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-bsu-alignment.eps:3667: ND ==> AND, 2ND
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-bsu-alignment.eps:3671: ND ==> AND, 2ND
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-bsu-alignment.eps:3724: ND ==> AND, 2ND
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-bsu-alignment.eps:3727: ND ==> AND, 2ND
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-bsu-alignment.eps:3757: ND ==> AND, 2ND
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-bsu-alignment.eps:5403: ND ==> AND, 2ND
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-bsu-alignment.eps:5410: ND ==> AND, 2ND
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-bsu-alignment.eps:5413: ND ==> AND, 2ND
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-bsu-alignment.eps:5467: ND ==> AND, 2ND
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-bsu-alignment.eps:5472: ND ==> AND, 2ND
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-bsu-alignment.eps:5476: ND ==> AND, 2ND
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-bsu-alignment.eps:5482: ND ==> AND, 2ND
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-bsu-alignment.eps:5491: ND ==> AND, 2ND
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-bsu-alignment.eps:5497: ND ==> AND, 2ND
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-bsu-alignment.eps:5540: ND ==> AND, 2ND
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-bsu-alignment.eps:5546: ND ==> AND, 2ND
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-bsu-alignment.eps:5551: ND ==> AND, 2ND
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-bsu-alignment.eps:5558: ND ==> AND, 2ND
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-bsu-alignment.eps:5562: ND ==> AND, 2ND
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-bsu-alignment.eps:5572: ND ==> AND, 2ND
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-bsu-alignment.eps:5580: ND ==> AND, 2ND
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-bsu-alignment.eps:5686: ND ==> AND, 2ND
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-bsu-alignment.eps:5690: ND ==> AND, 2ND
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-bsu-alignment.eps:5693: ND ==> AND, 2ND
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-bsu-alignment.eps:5697: ND ==> AND, 2ND
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-bsu-alignment.eps:5702: ND ==> AND, 2ND
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-bsu-alignment.eps:5706: ND ==> AND, 2ND
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-bsu-alignment.eps:5711: ND ==> AND, 2ND
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-bsu-alignment.eps:5714: ND ==> AND, 2ND
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-bsu-alignment.eps:5717: ND ==> AND, 2ND
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-bsu-alignment.eps:5720: ND ==> AND, 2ND
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-bsu-alignment.eps:5725: ND ==> AND, 2ND
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-bsu-alignment.eps:5729: ND ==> AND, 2ND
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-bsu-alignment.eps:5774: ND ==> AND, 2ND
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-bsu-alignment.eps:5777: ND ==> AND, 2ND
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-bsu-alignment.eps:5781: ND ==> AND, 2ND
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-bsu-alignment.eps:5785: ND ==> AND, 2ND
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-bsu-alignment.eps:5792: ND ==> AND, 2ND
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-bsu-alignment.eps:5980: fO ==> of, for
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-bsu-alignment.eps:6015: BA ==> BY, BE
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-bsu-alignment.eps:6060: UE ==> USE, DUE
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-bsu-alignment.eps:6095: bA ==> by, be
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-bsu-alignment.eps:6101: nd ==> and, 2nd
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-bsu-alignment.eps:6151: fO ==> of, for
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-bsu-alignment.eps:6201: oTU ==> out
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-bsu-alignment.eps:6235: oT ==> to, of, or
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-bsu-alignment.eps:6241: ND ==> AND, 2ND
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-bsu-alignment.eps:6260: 2sT ==> 2nd
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-bsu-alignment.eps:6272: SXl ==> xsl
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-bsu-alignment.eps:6295: adN ==> and
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-bsu-alignment.eps:6333: hTe ==> the
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-bsu-alignment.eps:6351: Fo ==> Of, for
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-bsu-alignment.eps:6353: acn ==> can, acne
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-bsu-alignment.eps:6356: TE ==> THE, BE, WE
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-bsu-alignment.eps:6420: OnY ==> only
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-bsu-alignment.eps:6483: fO ==> of, for
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-bsu-alignment.eps:6496: Ba ==> By, be
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-bsu-alignment.eps:6588: hEL ==> help, hell, heal
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-bsu-alignment.eps:6646: bre ==> be, brie
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-bsu-alignment.eps:6649: otho ==> otoh
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-bsu-alignment.eps:6658: ot ==> to, of, or
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-bsu-alignment.eps:6659: jUS ==> just
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-bsu-alignment.eps:6704: nd ==> and, 2nd
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-bsu-alignment.eps:6704: BA ==> BY, BE
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-bsu-alignment.eps:6733: Te ==> The, be, we
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-bsu-alignment.eps:6769: giR ==> git
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-bsu-alignment.eps:6773: GIR ==> GIT
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-bsu-alignment.eps:6787: ue ==> use, due
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-bsu-alignment.eps:6801: ACI ==> ACPI
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-bsu-alignment.eps:6803: ue ==> use, due
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-bsu-alignment.eps:6831: UE ==> USE, DUE
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-bsu-alignment.eps:6835: bA ==> by, be
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-bsu-alignment.eps:6854: nD ==> and, 2nd
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-bsu-alignment.eps:6874: teH ==> the
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-bsu-alignment.eps:6913: Te ==> The, be, we
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-bsu-alignment.eps:6970: fo ==> of, for
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-bsu-alignment.eps:7062: nD ==> and, 2nd
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-bsu-alignment.eps:7072: ND ==> AND, 2ND
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-bsu-alignment.eps:7096: AnE ==> and
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-bsu-alignment.eps:7147: OT ==> TO, OF, OR
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-bsu-alignment.eps:7153: nd ==> and, 2nd
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-bsu-alignment.eps:7153: TYE ==> TYPE, TIE
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-bsu-alignment.eps:7214: UE ==> USE, DUE
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-bsu-alignment.eps:7259: ba ==> by, be
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-bsu-alignment.eps:7281: iHS ==> his
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-bsu-alignment.eps:7320: Ot ==> To, of, or
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-bsu-alignment.eps:7345: Ue ==> Use, due
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-bsu-alignment.eps:7378: Ue ==> Use, due
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-bsu-alignment.eps:7406: FO ==> OF, FOR
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-bsu-alignment.eps:7412: TBe ==> the
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-bsu-alignment.eps:7430: UE ==> USE, DUE
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-bsu-alignment.eps:7492: nd ==> and, 2nd
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-bsu-alignment.eps:7536: FO ==> OF, FOR
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-bsu-alignment.eps:7568: UE ==> USE, DUE
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-bsu-alignment.eps:7600: Fo ==> Of, for
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-bsu-alignment.eps:7623: Te ==> The, be, we
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-bsu-alignment.eps:7647: Ba ==> By, be
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-bsu-alignment.eps:7802: tHs ==> the, this
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-bsu-alignment.eps:7807: adn ==> and
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-bsu-alignment.eps:7879: Tha ==> Than, that, the
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-bsu-alignment.eps:7897: ba ==> by, be
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-bsu-alignment.eps:7908: FO ==> OF, FOR
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-bsu-alignment.eps:7947: Fo ==> Of, for
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-bsu-alignment.eps:7949: fOF ==> for
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-bsu-alignment.eps:7953: tE ==> the, be, we
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-bsu-alignment.eps:7962: 1nd ==> 1st
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-bsu-alignment.eps:7971: TRE ==> TREE
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-bsu-alignment.eps:7987: fO ==> of, for
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-bsu-alignment.eps:8007: Fo ==> Of, for
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-bsu-alignment.eps:8011: Fo ==> Of, for
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-bsu-alignment.eps:8028: Ba ==> By, be
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-bsu-alignment.eps:8072: uE ==> use, due
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-bsu-alignment.eps:8109: TE ==> THE, BE, WE
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-bsu-alignment.eps:8121: Ot ==> To, of, or
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-bsu-alignment.eps:8135: oLL ==> all, ole, old, olly, oil
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-bsu-alignment.eps:8145: ONL ==> ONLY
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-bsu-alignment.eps:8151: TEh ==> the
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-bsu-alignment.eps:8175: Ot ==> To, of, or
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-bsu-alignment.eps:8226: FO ==> OF, FOR
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-bsu-alignment.eps:8238: ThS ==> the, this
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-bsu-alignment.eps:8270: TrE ==> tree
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-bsu-alignment.eps:8292: BA ==> BY, BE
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-bsu-alignment.eps:8317: te ==> the, be, we
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-bsu-alignment.eps:8335: te ==> the, be, we
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-bsu-alignment.eps:8344: nD ==> and, 2nd
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-bsu-alignment.eps:8358: uE ==> use, due
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-bsu-alignment.eps:8360: Te ==> The, be, we
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-bsu-alignment.eps:8361: UE ==> USE, DUE
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-bsu-alignment.eps:8367: aCN ==> can, acne
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-bsu-alignment.eps:8376: nD ==> and, 2nd
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-bsu-alignment.eps:8386: Fo ==> Of, for
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-bsu-alignment.eps:8394: loD ==> load
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-bsu-alignment.eps:8405: ot ==> to, of, or
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-bsu-alignment.eps:8426: fO ==> of, for
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-bsu-alignment.eps:8494: UE ==> USE, DUE
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-bsu-alignment.eps:8516: egE ==> edge
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-bsu-alignment.eps:8530: UE ==> USE, DUE
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-bsu-alignment.eps:8560: YSE ==> YES, USE, NYSE
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-bsu-alignment.eps:8592: Nd ==> And, 2nd
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-bsu-alignment.eps:8599: oT ==> to, of, or
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-bsu-alignment.eps:8613: OT ==> TO, OF, OR
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-bsu-alignment.eps:8678: Nd ==> And, 2nd
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-bsu-alignment.eps:8730: hEl ==> help, hell, heal
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-bsu-alignment.eps:8799: bA ==> by, be
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-bsu-alignment.eps:8808: seH ==> she
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-bsu-alignment.eps:8816: Ot ==> To, of, or
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-bsu-alignment.eps:8830: ue ==> use, due
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-bsu-alignment.eps:8900: nD ==> and, 2nd
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-bsu-alignment.eps:8925: haA ==> has
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-bsu-alignment.eps:8961: bA ==> by, be
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-bsu-alignment.eps:8962: Ot ==> To, of, or
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-bsu-alignment.eps:8965: ba ==> by, be
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-bsu-alignment.eps:8968: Ba ==> By, be
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-bsu-alignment.eps:9039: nD ==> and, 2nd
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-bsu-alignment.eps:9062: fro ==> for, from
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-bsu-alignment.eps:9072: uE ==> use, due
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-bsu-alignment.eps:9090: DaA ==> data
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-bsu-alignment.eps:9098: tHi ==> the, this
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-bsu-alignment.eps:9125: fo ==> of, for
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-bsu-alignment.eps:9155: ONY ==> ONLY
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-bsu-alignment.eps:9169: Te ==> The, be, we
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-bsu-alignment.eps:9174: te ==> the, be, we
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-bsu-alignment.eps:9189: FO ==> OF, FOR
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-bsu-alignment.eps:9206: Te ==> The, be, we
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-bsu-alignment.eps:9253: ba ==> by, be
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-bsu-alignment.eps:9312: FO ==> OF, FOR
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-bsu-alignment.eps:9320: nD ==> and, 2nd
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-bsu-alignment.eps:9332: te ==> the, be, we
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-bsu-alignment.eps:9375: aFe ==> safe
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-bsu-alignment.eps:9394: Ue ==> Use, due
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-bsu-alignment.eps:9504: tE ==> the, be, we
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-bsu-alignment.eps:9556: Fo ==> Of, for
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-bsu-alignment.eps:9561: FO ==> OF, FOR
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-bsu-alignment.eps:9565: Te ==> The, be, we
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-bsu-alignment.eps:9573: UE ==> USE, DUE
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-bsu-alignment.eps:9593: TE ==> THE, BE, WE
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-bsu-alignment.eps:9600: Ot ==> To, of, or
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-bsu-alignment.eps:9626: te ==> the, be, we
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-bsu-alignment.eps:9646: Nd ==> And, 2nd
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-bsu-alignment.eps:9675: OT ==> TO, OF, OR
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-bsu-alignment.eps:9705: Fo ==> Of, for
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-bsu-alignment.eps:9734: Te ==> The, be, we
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-bsu-alignment.eps:9746: TeH ==> the
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-bsu-alignment.eps:9780: OT ==> TO, OF, OR
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-bsu-alignment.eps:9793: ot ==> to, of, or
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-bsu-alignment.eps:9798: anS ==> and
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-bsu-alignment.eps:9849: SUh ==> such
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-bsu-alignment.eps:9870: Fo ==> Of, for
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-bsu-alignment.eps:9879: YhE ==> the
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-bsu-alignment.eps:9880: Onl ==> Only
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-bsu-alignment.eps:9881: te ==> the, be, we
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-bsu-alignment.eps:9886: Tht ==> The, that
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-bsu-alignment.eps:9944: OT ==> TO, OF, OR
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-bsu-alignment.eps:9950: lod ==> load
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-bsu-alignment.eps:9954: THiRS ==> third, thirst
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-bsu-alignment.eps:9975: fo ==> of, for
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-bsu-alignment.eps:10002: fO ==> of, for
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-bsu-alignment.eps:10012: nD ==> and, 2nd
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-bsu-alignment.eps:10015: Nd ==> And, 2nd
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-bsu-alignment.eps:10021: OLL ==> ALL, OLE, OLD, OLLY, OIL
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-bsu-alignment.eps:10065: nD ==> and, 2nd
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-bsu-alignment.eps:10080: tYe ==> type, tie
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-bsu-alignment.eps:10083: neD ==> need
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-bsu-alignment.eps:10085: Fo ==> Of, for
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-bsu-alignment.eps:10092: nD ==> and, 2nd
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-bsu-alignment.eps:10177: FO ==> OF, FOR
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-bsu-alignment.eps:10214: elES ==> else
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-bsu-alignment.eps:10244: ND ==> AND, 2ND
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-bsu-alignment.eps:10275: Ba ==> By, be
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-bsu-alignment.eps:10286: DAa ==> data
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-bsu-alignment.eps:10319: HVe ==> have
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-bsu-alignment.eps:10416: Nd ==> And, 2nd
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-bsu-alignment.eps:10417: Te ==> The, be, we
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-bsu-alignment.eps:10438: fof ==> for
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-bsu-alignment.eps:10443: Ba ==> By, be
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-bsu-alignment.eps:10452: nd ==> and, 2nd
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-bsu-alignment.eps:10456: fO ==> of, for
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-bsu-alignment.eps:10468: Wqs ==> Was
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-bsu-alignment.eps:10480: FoT ==> for, fit, dot, rot, cot, got, tot, fog
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-bsu-alignment.eps:10502: TYE ==> TYPE, TIE
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-bsu-alignment.eps:10518: bA ==> by, be
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-bsu-alignment.eps:10568: oND ==> one
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-bsu-alignment.eps:10615: fo ==> of, for
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-bsu-alignment.eps:10640: aLs ==> also
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-bsu-alignment.eps:10706: oT ==> to, of, or
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-bsu-alignment.eps:10714: nd ==> and, 2nd
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-bsu-alignment.eps:10723: Afe ==> Safe
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-bsu-alignment.eps:10728: oT ==> to, of, or
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-bsu-alignment.eps:10739: FO ==> OF, FOR
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-bsu-alignment.eps:10754: OFO ==> OF
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-bsu-alignment.eps:10778: BA ==> BY, BE
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-bsu-alignment.eps:10828: nd ==> and, 2nd
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-bsu-alignment.eps:10870: ue ==> use, due
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-bsu-alignment.eps:10895: olY ==> only
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-bsu-alignment.eps:10920: BA ==> BY, BE
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-bsu-alignment.eps:10923: FO ==> OF, FOR
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-bsu-alignment.eps:10946: hSI ==> his
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-bsu-alignment.eps:11000: bA ==> by, be
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-bsu-alignment.eps:11064: 2ST ==> 2ND
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-bsu-alignment.eps:11083: jus ==> just
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-bsu-alignment.eps:11084: BA ==> BY, BE
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-bsu-alignment.eps:11130: eDE ==> edge
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-bsu-alignment.eps:11156: Whn ==> When
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-bsu-alignment.eps:11208: TE ==> THE, BE, WE
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-bsu-alignment.eps:11226: fO ==> of, for
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-bsu-alignment.eps:11261: FO ==> OF, FOR
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-bsu-alignment.eps:11274: TE ==> THE, BE, WE
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-bsu-alignment.eps:11291: MYU ==> MY
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-bsu-alignment.eps:11309: OT ==> TO, OF, OR
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-bsu-alignment.eps:11338: FO ==> OF, FOR
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-bsu-alignment.eps:11339: ba ==> by, be
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-bsu-alignment.eps:11342: Fo ==> Of, for
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-bsu-alignment.eps:11343: foT ==> for, fit, dot, rot, cot, got, tot, fog
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-bsu-alignment.eps:11385: oT ==> to, of, or
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-bsu-alignment.eps:11391: uE ==> use, due
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-bsu-alignment.eps:11396: nD ==> and, 2nd
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-ecoli.eps:49: nd ==> and, 2nd
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-ecoli.eps:225: nd ==> and, 2nd
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-ecoli.eps:226: nd ==> and, 2nd
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-ecoli.eps:260: nd ==> and, 2nd
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-ecoli.eps:261: nd ==> and, 2nd
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-ecoli.eps:390: nd ==> and, 2nd
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-ecoli.eps:396: nd ==> and, 2nd
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-ecoli.eps:397: nd ==> and, 2nd
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-ecoli.eps:405: nd ==> and, 2nd
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-ecoli.eps:406: nd ==> and, 2nd
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-ecoli.eps:407: nd ==> and, 2nd
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-ecoli.eps:408: nd ==> and, 2nd
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-ecoli.eps:409: nd ==> and, 2nd
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-ecoli.eps:410: nd ==> and, 2nd
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-ecoli.eps:411: nd ==> and, 2nd
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-ecoli.eps:412: nd ==> and, 2nd
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-ecoli.eps:413: nd ==> and, 2nd
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-ecoli.eps:414: nd ==> and, 2nd
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-ecoli.eps:415: nd ==> and, 2nd
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-ecoli.eps:416: nd ==> and, 2nd
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-ecoli.eps:417: nd ==> and, 2nd
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-ecoli.eps:418: nd ==> and, 2nd
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-ecoli.eps:419: nd ==> and, 2nd
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-ecoli.eps:420: nd ==> and, 2nd
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-ecoli.eps:421: nd ==> and, 2nd
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-ecoli.eps:424: nd ==> and, 2nd
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-ecoli.eps:429: nd ==> and, 2nd
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-ecoli.eps:430: nd ==> and, 2nd
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-ecoli.eps:431: nd ==> and, 2nd
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-ecoli.eps:432: nd ==> and, 2nd
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-ecoli.eps:434: nd ==> and, 2nd
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-ecoli.eps:435: nd ==> and, 2nd
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-ecoli.eps:438: nd ==> and, 2nd
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-ecoli.eps:439: nd ==> and, 2nd
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-ecoli.eps:440: nd ==> and, 2nd
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-ecoli.eps:443: nd ==> and, 2nd
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-ecoli.eps:2442: nd ==> and, 2nd
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-ecoli.eps:2445: nd ==> and, 2nd
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-ecoli.eps:2446: nd ==> and, 2nd
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-ecoli.eps:2448: nd ==> and, 2nd
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-ecoli.eps:2449: nd ==> and, 2nd
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-ecoli.eps:2457: nd ==> and, 2nd
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-ecoli.eps:2458: nd ==> and, 2nd
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-ecoli.eps:2459: nd ==> and, 2nd
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-ecoli.eps:2460: nd ==> and, 2nd
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-ecoli.eps:2461: nd ==> and, 2nd
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-ecoli.eps:2462: nd ==> and, 2nd
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-ecoli.eps:2463: nd ==> and, 2nd
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-ecoli.eps:2464: nd ==> and, 2nd
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-ecoli.eps:2465: nd ==> and, 2nd
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-ecoli.eps:2466: nd ==> and, 2nd
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-ecoli.eps:2467: nd ==> and, 2nd
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-ecoli.eps:2468: nd ==> and, 2nd
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-ecoli.eps:2469: nd ==> and, 2nd
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-ecoli.eps:2470: nd ==> and, 2nd
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-ecoli.eps:2471: nd ==> and, 2nd
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-ecoli.eps:2472: nd ==> and, 2nd
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-ecoli.eps:2473: nd ==> and, 2nd
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-ecoli.eps:3448: ND ==> AND, 2ND
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-ecoli.eps:3453: ND ==> AND, 2ND
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-ecoli.eps:3458: ND ==> AND, 2ND
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-ecoli.eps:3496: ND ==> AND, 2ND
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-ecoli.eps:3541: ND ==> AND, 2ND
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-ecoli.eps:3597: ND ==> AND, 2ND
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-ecoli.eps:5092: ND ==> AND, 2ND
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-ecoli.eps:5097: ND ==> AND, 2ND
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-ecoli.eps:5104: ND ==> AND, 2ND
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-ecoli.eps:5107: ND ==> AND, 2ND
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-ecoli.eps:5273: ND ==> AND, 2ND
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-ecoli.eps:5383: ND ==> AND, 2ND
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-ecoli.eps:5388: ND ==> AND, 2ND
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-ecoli.eps:5392: ND ==> AND, 2ND
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-ecoli.eps:5398: ND ==> AND, 2ND
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-ecoli.eps:5407: ND ==> AND, 2ND
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-ecoli.eps:5413: ND ==> AND, 2ND
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-ecoli.eps:5458: ND ==> AND, 2ND
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-ecoli.eps:5465: ND ==> AND, 2ND
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-ecoli.eps:5504: ND ==> AND, 2ND
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-ecoli.eps:5512: ND ==> AND, 2ND
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-ecoli.eps:5516: ND ==> AND, 2ND
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-ecoli.eps:5526: ND ==> AND, 2ND
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-ecoli.eps:5534: ND ==> AND, 2ND
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-ecoli.eps:5643: ND ==> AND, 2ND
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-ecoli.eps:5647: ND ==> AND, 2ND
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-ecoli.eps:5651: ND ==> AND, 2ND
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-ecoli.eps:5655: ND ==> AND, 2ND
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-ecoli.eps:5657: ND ==> AND, 2ND
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-ecoli.eps:5660: ND ==> AND, 2ND
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-ecoli.eps:5662: ND ==> AND, 2ND
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-ecoli.eps:5668: ND ==> AND, 2ND
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-ecoli.eps:5672: ND ==> AND, 2ND
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-ecoli.eps:5678: ND ==> AND, 2ND
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-ecoli.eps:5686: ND ==> AND, 2ND
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-ecoli.eps:5690: ND ==> AND, 2ND
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-ecoli.eps:5700: ND ==> AND, 2ND
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-ecoli.eps:5708: ND ==> AND, 2ND
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-ecoli.eps:5712: ND ==> AND, 2ND
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-ecoli.eps:5717: ND ==> AND, 2ND
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-ecoli.eps:5725: ND ==> AND, 2ND
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-ecoli.eps:5731: ND ==> AND, 2ND
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-ecoli.eps:5736: ND ==> AND, 2ND
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-ecoli.eps:5739: ND ==> AND, 2ND
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-ecoli.eps:5744: ND ==> AND, 2ND
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-ecoli.eps:5749: ND ==> AND, 2ND
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-ecoli.eps:5753: ND ==> AND, 2ND
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-ecoli.eps:5759: ND ==> AND, 2ND
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-ecoli.eps:5765: ND ==> AND, 2ND
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-ecoli.eps:5772: ND ==> AND, 2ND
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-ecoli.eps:5776: ND ==> AND, 2ND
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-ecoli.eps:5782: ND ==> AND, 2ND
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-ecoli.eps:5790: ND ==> AND, 2ND
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-ecoli.eps:5796: ND ==> AND, 2ND
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-ecoli.eps:5802: ND ==> AND, 2ND
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-ecoli.eps:5809: ND ==> AND, 2ND
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-ecoli.eps:5815: ND ==> AND, 2ND
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-ecoli.eps:5822: ND ==> AND, 2ND
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-ecoli.eps:5826: ND ==> AND, 2ND
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-ecoli.eps:5829: ND ==> AND, 2ND
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-ecoli.eps:5837: ND ==> AND, 2ND
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-ecoli.eps:5843: ND ==> AND, 2ND
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-ecoli.eps:5849: ND ==> AND, 2ND
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-ecoli.eps:5856: ND ==> AND, 2ND
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-ecoli.eps:5862: ND ==> AND, 2ND
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-ecoli.eps:5867: ND ==> AND, 2ND
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-ecoli.eps:5874: ND ==> AND, 2ND
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-ecoli.eps:5878: ND ==> AND, 2ND
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-ecoli.eps:5884: ND ==> AND, 2ND
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-ecoli.eps:5890: ND ==> AND, 2ND
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-ecoli.eps:5896: ND ==> AND, 2ND
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-ecoli.eps:5983: ND ==> AND, 2ND
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-ecoli.eps:5988: ND ==> AND, 2ND
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-ecoli.eps:5990: ND ==> AND, 2ND
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-ecoli.eps:5996: ND ==> AND, 2ND
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-ecoli.eps:6004: ND ==> AND, 2ND
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-ecoli.eps:6010: ND ==> AND, 2ND
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-ecoli.eps:6016: ND ==> AND, 2ND
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-ecoli.eps:6022: ND ==> AND, 2ND
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-ecoli.eps:6027: ND ==> AND, 2ND
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-ecoli.eps:6031: ND ==> AND, 2ND
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-ecoli.eps:6037: ND ==> AND, 2ND
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-ecoli.eps:6043: ND ==> AND, 2ND
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-ecoli.eps:6050: ND ==> AND, 2ND
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-ecoli.eps:6054: ND ==> AND, 2ND
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-ecoli.eps:6175: tE ==> the, be, we
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-ecoli.eps:6192: Fo ==> Of, for
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-ecoli.eps:6195: teH ==> the
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-ecoli.eps:6233: nin ==> inn, min, bin, nine
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-ecoli.eps:6248: Nd ==> And, 2nd
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-ecoli.eps:6272: FO ==> OF, FOR
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-ecoli.eps:6302: ba ==> by, be
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-ecoli.eps:6355: DuM ==> dumb
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-ecoli.eps:6365: fO ==> of, for
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-ecoli.eps:6384: HsI ==> his
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-ecoli.eps:6391: Nd ==> And, 2nd
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-ecoli.eps:6479: te ==> the, be, we
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-ecoli.eps:6479: ojE ==> one
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-ecoli.eps:6514: ue ==> use, due
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-ecoli.eps:6517: ue ==> use, due
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-ecoli.eps:6531: tE ==> the, be, we
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-ecoli.eps:6535: Ot ==> To, of, or
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-ecoli.eps:6543: Nd ==> And, 2nd
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-ecoli.eps:6555: ot ==> to, of, or
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-ecoli.eps:6605: Nd ==> And, 2nd
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-ecoli.eps:6628: bA ==> by, be
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-ecoli.eps:6642: coO ==> coup
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-ecoli.eps:6672: fo ==> of, for
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-ecoli.eps:6720: ois ==> is
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-ecoli.eps:6728: te ==> the, be, we
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-ecoli.eps:6742: ND ==> AND, 2ND
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-ecoli.eps:6770: OND ==> ONE
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-ecoli.eps:6806: uE ==> use, due
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-ecoli.eps:6830: TE ==> THE, BE, WE
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-ecoli.eps:6834: nIn ==> inn, min, bin, nine
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-ecoli.eps:6866: fO ==> of, for
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-ecoli.eps:6872: nd ==> and, 2nd
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-ecoli.eps:6883: FO ==> OF, FOR
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-ecoli.eps:6890: te ==> the, be, we
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-ecoli.eps:6920: UE ==> USE, DUE
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-ecoli.eps:6931: Nd ==> And, 2nd
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-ecoli.eps:7027: sEh ==> she
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-ecoli.eps:7066: nd ==> and, 2nd
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-ecoli.eps:7086: bA ==> by, be
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-ecoli.eps:7108: FO ==> OF, FOR
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-ecoli.eps:7108: UE ==> USE, DUE
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-ecoli.eps:7202: liK ==> like, lick, link
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-ecoli.eps:7248: OlY ==> only
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-ecoli.eps:7296: fO ==> of, for
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-ecoli.eps:7329: oIS ==> is
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-ecoli.eps:7344: Fo ==> Of, for
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-ecoli.eps:7356: FO ==> OF, FOR
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-ecoli.eps:7362: eGe ==> edge
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-ecoli.eps:7368: ND ==> AND, 2ND
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-ecoli.eps:7376: oT ==> to, of, or
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-ecoli.eps:7405: YUO ==> YOU
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-ecoli.eps:7412: OnY ==> only
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-ecoli.eps:7424: fro ==> for, from
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-ecoli.eps:7427: Te ==> The, be, we
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-ecoli.eps:7451: te ==> the, be, we
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-ecoli.eps:7451: WaN ==> want
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-ecoli.eps:7574: UE ==> USE, DUE
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-ecoli.eps:7604: OT ==> TO, OF, OR
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-ecoli.eps:7636: gIR ==> git
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-ecoli.eps:7643: OT ==> TO, OF, OR
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-ecoli.eps:7686: fO ==> of, for
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-ecoli.eps:7688: thme ==> them
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-ecoli.eps:7692: Ue ==> Use, due
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-ecoli.eps:7714: oNl ==> only
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-ecoli.eps:7721: uE ==> use, due
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-ecoli.eps:7770: nd ==> and, 2nd
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-ecoli.eps:7828: FO ==> OF, FOR
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-ecoli.eps:7897: OnY ==> only
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-ecoli.eps:7902: Te ==> The, be, we
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-ecoli.eps:7924: UE ==> USE, DUE
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-ecoli.eps:7933: Ot ==> To, of, or
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-ecoli.eps:7970: Ue ==> Use, due
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-ecoli.eps:7986: Fo ==> Of, for
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-ecoli.eps:8009: te ==> the, be, we
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-ecoli.eps:8044: bA ==> by, be
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-ecoli.eps:8091: kNO ==> know
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-ecoli.eps:8099: bA ==> by, be
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-ecoli.eps:8136: FoT ==> for, fit, dot, rot, cot, got, tot, fog
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-ecoli.eps:8138: TE ==> THE, BE, WE
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-ecoli.eps:8175: Tha ==> Than, that, the
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-ecoli.eps:8193: ba ==> by, be
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-ecoli.eps:8204: FO ==> OF, FOR
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-ecoli.eps:8249: tE ==> the, be, we
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-ecoli.eps:8275: Ot ==> To, of, or
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-ecoli.eps:8277: nd ==> and, 2nd
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-ecoli.eps:8317: Ba ==> By, be
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-ecoli.eps:8324: Ba ==> By, be
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-ecoli.eps:8368: uE ==> use, due
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-ecoli.eps:8405: TE ==> THE, BE, WE
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-ecoli.eps:8423: ot ==> to, of, or
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-ecoli.eps:8428: TRE ==> TREE
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-ecoli.eps:8461: ue ==> use, due
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-ecoli.eps:8478: kET ==> kept
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-ecoli.eps:8500: fo ==> of, for
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-ecoli.eps:8523: Te ==> The, be, we
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-ecoli.eps:8535: BA ==> BY, BE
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-ecoli.eps:8568: fo ==> of, for
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-ecoli.eps:8630: OT ==> TO, OF, OR
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-ecoli.eps:8749: bA ==> by, be
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-ecoli.eps:8783: oT ==> to, of, or
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-ecoli.eps:8858: AKS ==> ASK
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-ecoli.eps:8887: FEEK ==> FEEL
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-ecoli.eps:8892: Ue ==> Use, due
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-ecoli.eps:8927: ba ==> by, be
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-ecoli.eps:8928: Nd ==> And, 2nd
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-ecoli.eps:9018: bA ==> by, be
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-ecoli.eps:9026: tE ==> the, be, we
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-ecoli.eps:9079: uE ==> use, due
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-ecoli.eps:9104: uE ==> use, due
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-ecoli.eps:9115: tE ==> the, be, we
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-ecoli.eps:9154: ViE ==> via
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-ecoli.eps:9177: tE ==> the, be, we
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-ecoli.eps:9181: Ba ==> By, be
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-ecoli.eps:9249: fO ==> of, for
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-ecoli.eps:9275: fo ==> of, for
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-ecoli.eps:9283: grop ==> group, drop
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-ecoli.eps:9346: Hda ==> Had
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-ecoli.eps:9370: Fro ==> For, from
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-ecoli.eps:9395: bA ==> by, be
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-ecoli.eps:9476: Ths ==> The, this
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-ecoli.eps:9526: WIT ==> WITH
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-ecoli.eps:9566: oT ==> to, of, or
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-ecoli.eps:9572: coO ==> coup
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-ecoli.eps:9579: BA ==> BY, BE
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-ecoli.eps:9653: BA ==> BY, BE
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-ecoli.eps:9667: nd ==> and, 2nd
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-ecoli.eps:9688: Nin ==> Inn, min, bin, nine
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-ecoli.eps:9761: Noo ==> No
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-ecoli.eps:9793: TE ==> THE, BE, WE
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-ecoli.eps:9891: oT ==> to, of, or
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-ecoli.eps:9914: fO ==> of, for
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-ecoli.eps:9921: oT ==> to, of, or
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-ecoli.eps:9923: Fo ==> Of, for
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-ecoli.eps:9926: FO ==> OF, FOR
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-ecoli.eps:9970: Ba ==> By, be
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-ecoli.eps:9979: YAu ==> you, yaw
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-ecoli.eps:10040: SisE ==> size, sisal
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-ecoli.eps:10070: fWe ==> few
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-ecoli.eps:10090: TYE ==> TYPE, TIE
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-ecoli.eps:10093: WqS ==> was
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-ecoli.eps:10113: BA ==> BY, BE
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-ecoli.eps:10128: mOr ==> more
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-ecoli.eps:10203: OT ==> TO, OF, OR
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-ecoli.eps:10206: alO ==> also
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-ecoli.eps:10215: TE ==> THE, BE, WE
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-ecoli.eps:10232: saV ==> save
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-ecoli.eps:10238: THA ==> THAN, THAT, THE
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-ecoli.eps:10265: uE ==> use, due
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-ecoli.eps:10275: TE ==> THE, BE, WE
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-ecoli.eps:10341: ist ==> is, it, its, it's, sit, list
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-ecoli.eps:10372: ND ==> AND, 2ND
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-ecoli.eps:10397: Te ==> The, be, we
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-ecoli.eps:10502: hArT ==> heart, harm
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-ecoli.eps:10506: oT ==> to, of, or
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-ecoli.eps:10512: Ue ==> Use, due
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-ecoli.eps:10522: oJe ==> one
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-ecoli.eps:10552: TE ==> THE, BE, WE
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-ecoli.eps:10554: ot ==> to, of, or
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-ecoli.eps:10667: oT ==> to, of, or
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-ecoli.eps:10709: Ons ==> Owns
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-ecoli.eps:10722: Yuo ==> You
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-ecoli.eps:10739: ba ==> by, be
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-ecoli.eps:10761: tEH ==> the
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-ecoli.eps:10805: ThW ==> the, thaw
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-ecoli.eps:10838: gaUs ==> gauss, gauze
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-ecoli.eps:10882: IsT ==> is, it, its, it's, sit, list
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-ecoli.eps:10890: Nd ==> And, 2nd
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-ecoli.eps:10906: bA ==> by, be
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-ecoli.eps:10915: bA ==> by, be
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-ecoli.eps:10931: ND ==> AND, 2ND
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-ecoli.eps:10942: OT ==> TO, OF, OR
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-ecoli.eps:10942: eDN ==> end
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-ecoli.eps:10990: ot ==> to, of, or
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-ecoli.eps:11087: uE ==> use, due
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-ecoli.eps:11100: EDe ==> edge
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-ecoli.eps:11125: BUId ==> build
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-ecoli.eps:11150: fO ==> of, for
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-ecoli.eps:11150: THI ==> THE, THIS
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-ecoli.eps:11158: hgE ==> he
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-ecoli.eps:11159: FO ==> OF, FOR
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-ecoli.eps:11264: BA ==> BY, BE
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-ecoli.eps:11279: ND ==> AND, 2ND
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-ecoli.eps:11310: TE ==> THE, BE, WE
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-ecoli.eps:11319: FO ==> OF, FOR
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-ecoli.eps:11387: TE ==> THE, BE, WE
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-ecoli.eps:11390: GrWo ==> grow
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-ecoli.eps:11458: Ue ==> Use, due
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-ecoli.eps:11519: ba ==> by, be
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-ecoli.eps:11615: Iif ==> If
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-ecoli.eps:11626: uE ==> use, due
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-ecoli.eps:11700: ded ==> dead
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-ecoli.eps:11752: oT ==> to, of, or
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-ecoli.eps:11880: ba ==> by, be
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-ecoli.eps:11911: BA ==> BY, BE
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-ecoli.eps:11974: BA ==> BY, BE
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-ecoli.eps:11979: oT ==> to, of, or
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-ecoli.eps:11987: sER ==> set
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-ecoli.eps:12027: FO ==> OF, FOR
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-ecoli.eps:12029: nD ==> and, 2nd
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-ecoli.eps:12037: ue ==> use, due
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-ecoli.eps:12057: Nd ==> And, 2nd
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-ecoli.eps:12061: Nd ==> And, 2nd
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-ecoli.eps:12066: fRO ==> for, from
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-ecoli.eps:12068: mAco ==> macro
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-ecoli.eps:12095: jUS ==> just
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-ecoli.eps:12227: Fo ==> Of, for
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-ecoli.eps:12247: ba ==> by, be
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-ecoli.eps:12247: Ba ==> By, be
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-ecoli.eps:12254: nD ==> and, 2nd
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-ecoli.eps:12265: te ==> the, be, we
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-ecoli.eps:12275: tE ==> the, be, we
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-ecoli.eps:12298: TE ==> THE, BE, WE
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-ecoli.eps:12298: ba ==> by, be
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-ecoli.eps:12327: Ue ==> Use, due
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-ecoli.eps:12344: ONl ==> only
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-ecoli.eps:12351: ot ==> to, of, or
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-ecoli.eps:12399: nD ==> and, 2nd
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-ecoli.eps:12475: nD ==> and, 2nd
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-ecoli.eps:12477: Ded ==> Dead
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-ecoli.eps:12522: FO ==> OF, FOR
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-ecoli.eps:12535: Fo ==> Of, for
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-ecoli.eps:12567: ba ==> by, be
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-ecoli.eps:12608: BA ==> BY, BE
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-ecoli.eps:12636: Fo ==> Of, for
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-ecoli.eps:12678: BA ==> BY, BE
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-ecoli.eps:12687: Te ==> The, be, we
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-ecoli.eps:12707: Nd ==> And, 2nd
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-ecoli.eps:12740: Te ==> The, be, we
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-ecoli.eps:12764: nd ==> and, 2nd
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-ecoli.eps:12777: ba ==> by, be
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-ecoli.eps:12839: uE ==> use, due
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-ecoli.eps:12885: Nd ==> And, 2nd
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-ecoli.eps:12897: FO ==> OF, FOR
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-ecoli.eps:12913: BA ==> BY, BE
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-ecoli.eps:12920: OT ==> TO, OF, OR
data/infernal-1.1.3/documentation/userguide/Figures/rnaseP-ecoli.eps:12920: Ba ==> By, be
data/infernal-1.1.3/documentation/userguide/Figures/trna1-DF6280.eps:49: nd ==> and, 2nd
data/infernal-1.1.3/documentation/userguide/Figures/trna1-DF6280.eps:225: nd ==> and, 2nd
data/infernal-1.1.3/documentation/userguide/Figures/trna1-DF6280.eps:226: nd ==> and, 2nd
data/infernal-1.1.3/documentation/userguide/Figures/trna1-DF6280.eps:260: nd ==> and, 2nd
data/infernal-1.1.3/documentation/userguide/Figures/trna1-DF6280.eps:261: nd ==> and, 2nd
data/infernal-1.1.3/documentation/userguide/Figures/trna1-DF6280.eps:390: nd ==> and, 2nd
data/infernal-1.1.3/documentation/userguide/Figures/trna1-DF6280.eps:396: nd ==> and, 2nd
data/infernal-1.1.3/documentation/userguide/Figures/trna1-DF6280.eps:397: nd ==> and, 2nd
data/infernal-1.1.3/documentation/userguide/Figures/trna1-DF6280.eps:405: nd ==> and, 2nd
data/infernal-1.1.3/documentation/userguide/Figures/trna1-DF6280.eps:406: nd ==> and, 2nd
data/infernal-1.1.3/documentation/userguide/Figures/trna1-DF6280.eps:407: nd ==> and, 2nd
data/infernal-1.1.3/documentation/userguide/Figures/trna1-DF6280.eps:408: nd ==> and, 2nd
data/infernal-1.1.3/documentation/userguide/Figures/trna1-DF6280.eps:409: nd ==> and, 2nd
data/infernal-1.1.3/documentation/userguide/Figures/trna1-DF6280.eps:410: nd ==> and, 2nd
data/infernal-1.1.3/documentation/userguide/Figures/trna1-DF6280.eps:411: nd ==> and, 2nd
data/infernal-1.1.3/documentation/userguide/Figures/trna1-DF6280.eps:412: nd ==> and, 2nd
data/infernal-1.1.3/documentation/userguide/Figures/trna1-DF6280.eps:413: nd ==> and, 2nd
data/infernal-1.1.3/documentation/userguide/Figures/trna1-DF6280.eps:414: nd ==> and, 2nd
data/infernal-1.1.3/documentation/userguide/Figures/trna1-DF6280.eps:415: nd ==> and, 2nd
data/infernal-1.1.3/documentation/userguide/Figures/trna1-DF6280.eps:416: nd ==> and, 2nd
data/infernal-1.1.3/documentation/userguide/Figures/trna1-DF6280.eps:417: nd ==> and, 2nd
data/infernal-1.1.3/documentation/userguide/Figures/trna1-DF6280.eps:418: nd ==> and, 2nd
data/infernal-1.1.3/documentation/userguide/Figures/trna1-DF6280.eps:419: nd ==> and, 2nd
data/infernal-1.1.3/documentation/userguide/Figures/trna1-DF6280.eps:420: nd ==> and, 2nd
data/infernal-1.1.3/documentation/userguide/Figures/trna1-DF6280.eps:421: nd ==> and, 2nd
data/infernal-1.1.3/documentation/userguide/Figures/trna1-DF6280.eps:424: nd ==> and, 2nd
data/infernal-1.1.3/documentation/userguide/Figures/trna1-DF6280.eps:429: nd ==> and, 2nd
data/infernal-1.1.3/documentation/userguide/Figures/trna1-DF6280.eps:430: nd ==> and, 2nd
data/infernal-1.1.3/documentation/userguide/Figures/trna1-DF6280.eps:431: nd ==> and, 2nd
data/infernal-1.1.3/documentation/userguide/Figures/trna1-DF6280.eps:432: nd ==> and, 2nd
data/infernal-1.1.3/documentation/userguide/Figures/trna1-DF6280.eps:434: nd ==> and, 2nd
data/infernal-1.1.3/documentation/userguide/Figures/trna1-DF6280.eps:435: nd ==> and, 2nd
data/infernal-1.1.3/documentation/userguide/Figures/trna1-DF6280.eps:438: nd ==> and, 2nd
data/infernal-1.1.3/documentation/userguide/Figures/trna1-DF6280.eps:439: nd ==> and, 2nd
data/infernal-1.1.3/documentation/userguide/Figures/trna1-DF6280.eps:440: nd ==> and, 2nd
data/infernal-1.1.3/documentation/userguide/Figures/trna1-DF6280.eps:443: nd ==> and, 2nd
data/infernal-1.1.3/documentation/userguide/Figures/trna1-DF6280.eps:2442: nd ==> and, 2nd
data/infernal-1.1.3/documentation/userguide/Figures/trna1-DF6280.eps:2445: nd ==> and, 2nd
data/infernal-1.1.3/documentation/userguide/Figures/trna1-DF6280.eps:2446: nd ==> and, 2nd
data/infernal-1.1.3/documentation/userguide/Figures/trna1-DF6280.eps:2448: nd ==> and, 2nd
data/infernal-1.1.3/documentation/userguide/Figures/trna1-DF6280.eps:2449: nd ==> and, 2nd
data/infernal-1.1.3/documentation/userguide/Figures/trna1-DF6280.eps:2457: nd ==> and, 2nd
data/infernal-1.1.3/documentation/userguide/Figures/trna1-DF6280.eps:2458: nd ==> and, 2nd
data/infernal-1.1.3/documentation/userguide/Figures/trna1-DF6280.eps:2459: nd ==> and, 2nd
data/infernal-1.1.3/documentation/userguide/Figures/trna1-DF6280.eps:2460: nd ==> and, 2nd
data/infernal-1.1.3/documentation/userguide/Figures/trna1-DF6280.eps:2461: nd ==> and, 2nd
data/infernal-1.1.3/documentation/userguide/Figures/trna1-DF6280.eps:2462: nd ==> and, 2nd
data/infernal-1.1.3/documentation/userguide/Figures/trna1-DF6280.eps:2463: nd ==> and, 2nd
data/infernal-1.1.3/documentation/userguide/Figures/trna1-DF6280.eps:2464: nd ==> and, 2nd
data/infernal-1.1.3/documentation/userguide/Figures/trna1-DF6280.eps:2465: nd ==> and, 2nd
data/infernal-1.1.3/documentation/userguide/Figures/trna1-DF6280.eps:2466: nd ==> and, 2nd
data/infernal-1.1.3/documentation/userguide/Figures/trna1-DF6280.eps:2467: nd ==> and, 2nd
data/infernal-1.1.3/documentation/userguide/Figures/trna1-DF6280.eps:2468: nd ==> and, 2nd
data/infernal-1.1.3/documentation/userguide/Figures/trna1-DF6280.eps:2469: nd ==> and, 2nd
data/infernal-1.1.3/documentation/userguide/Figures/trna1-DF6280.eps:2470: nd ==> and, 2nd
data/infernal-1.1.3/documentation/userguide/Figures/trna1-DF6280.eps:2471: nd ==> and, 2nd
data/infernal-1.1.3/documentation/userguide/Figures/trna1-DF6280.eps:2472: nd ==> and, 2nd
data/infernal-1.1.3/documentation/userguide/Figures/trna1-DF6280.eps:2473: nd ==> and, 2nd
data/infernal-1.1.3/documentation/userguide/Figures/trna1-DF6280.eps:3383: ND ==> AND, 2ND
data/infernal-1.1.3/documentation/userguide/Figures/trna1-DF6280.eps:3389: ND ==> AND, 2ND
data/infernal-1.1.3/documentation/userguide/Figures/trna1-DF6280.eps:3393: ND ==> AND, 2ND
data/infernal-1.1.3/documentation/userguide/Figures/trna1-DF6280.eps:3398: ND ==> AND, 2ND
data/infernal-1.1.3/documentation/userguide/Figures/trna1-DF6280.eps:3462: ND ==> AND, 2ND
data/infernal-1.1.3/documentation/userguide/Figures/trna1-DF6280.eps:3470: ND ==> AND, 2ND
data/infernal-1.1.3/documentation/userguide/Figures/trna1-DF6280.eps:4192: nD ==> and, 2nd
data/infernal-1.1.3/documentation/userguide/Figures/trna1-DF6280.eps:4246: ba ==> by, be
data/infernal-1.1.3/documentation/userguide/Figures/trna1-DF6280.eps:4294: Nd ==> And, 2nd
data/infernal-1.1.3/documentation/userguide/Figures/trna1-DF6280.eps:4295: OT ==> TO, OF, OR
data/infernal-1.1.3/documentation/userguide/Figures/trna1-DF6280.eps:4307: ND ==> AND, 2ND
data/infernal-1.1.3/documentation/userguide/Figures/trna1-DF6280.eps:4329: cLik ==> click
data/infernal-1.1.3/documentation/userguide/Figures/trna1-DF6280.eps:4452: Whe ==> When, we
data/infernal-1.1.3/documentation/userguide/Figures/trna1-DF6280.eps:4455: cNa ==> can
data/infernal-1.1.3/documentation/userguide/Figures/trna1-DF6280.eps:4459: oT ==> to, of, or
data/infernal-1.1.3/documentation/userguide/Figures/trna1-DF6280.eps:4473: OT ==> TO, OF, OR
data/infernal-1.1.3/documentation/userguide/Figures/trna1-DF6280.eps:4491: ND ==> AND, 2ND
data/infernal-1.1.3/documentation/userguide/Figures/trna1-DF6280.eps:4522: ot ==> to, of, or
data/infernal-1.1.3/documentation/userguide/Figures/trna1-DF6280.eps:4528: Wqs ==> Was
data/infernal-1.1.3/documentation/userguide/Figures/trna1-DF6280.eps:4544: oT ==> to, of, or
data/infernal-1.1.3/documentation/userguide/Figures/trna1-DF6280.eps:4549: fo ==> of, for
data/infernal-1.1.3/documentation/userguide/Figures/trna1-DF6280.eps:4575: fo ==> of, for
data/infernal-1.1.3/documentation/userguide/Figures/trna1-DF6280.eps:4599: FoF ==> for
data/infernal-1.1.3/documentation/userguide/Figures/trna1-DF6280.eps:4606: TE ==> THE, BE, WE
data/infernal-1.1.3/documentation/userguide/Figures/trna1-DF6280.eps:4670: fO ==> of, for
data/infernal-1.1.3/documentation/userguide/Figures/trna1-DF6280.eps:4673: uE ==> use, due
data/infernal-1.1.3/documentation/userguide/Figures/trna1-DF6280.eps:4676: OT ==> TO, OF, OR
data/infernal-1.1.3/documentation/userguide/Figures/trna1-DF6280.eps:4685: te ==> the, be, we
data/infernal-1.1.3/documentation/userguide/Figures/trna1-DF6280.eps:4766: tE ==> the, be, we
data/infernal-1.1.3/documentation/userguide/Figures/trna1-DF6280.eps:4771: UE ==> USE, DUE
data/infernal-1.1.3/documentation/userguide/Figures/trna1-DF6280.eps:4788: GiR ==> git
data/infernal-1.1.3/documentation/userguide/Figures/trna1-DF6280.eps:4814: Ot ==> To, of, or
data/infernal-1.1.3/documentation/userguide/Figures/trna1-DF6280.eps:4815: bA ==> by, be
data/infernal-1.1.3/documentation/userguide/Figures/trna1-DF6280.eps:4867: Nin ==> Inn, min, bin, nine
data/infernal-1.1.3/documentation/userguide/Figures/trna1-DF6280.eps:4871: oT ==> to, of, or
data/infernal-1.1.3/documentation/userguide/Figures/trna1-DF6280.eps:4923: aNs ==> and
data/infernal-1.1.3/documentation/userguide/Figures/trna1-DF6280.eps:4925: oT ==> to, of, or
data/infernal-1.1.3/documentation/userguide/Figures/trna1-DF6280.eps:4950: Seh ==> She
data/infernal-1.1.3/documentation/userguide/Figures/trna1-DF6280.eps:4963: Ot ==> To, of, or
data/infernal-1.1.3/documentation/userguide/Figures/trna1-DF6280.eps:4970: fo ==> of, for
data/infernal-1.1.3/documentation/userguide/Figures/trna1-DF6280.eps:5021: Ue ==> Use, due
data/infernal-1.1.3/documentation/userguide/Figures/trna1-DF6280.eps:5050: fo ==> of, for
data/infernal-1.1.3/documentation/userguide/Figures/trna1-DF6280.eps:5090: fo ==> of, for
data/infernal-1.1.3/documentation/userguide/Figures/trna1-DF6280.eps:5101: alo ==> also
data/infernal-1.1.3/documentation/userguide/Figures/trna1-DF6280.eps:5184: isT ==> is, it, its, it's, sit, list
data/infernal-1.1.3/documentation/userguide/Figures/trna1-DF6280.eps:5194: Fo ==> Of, for
data/infernal-1.1.3/documentation/userguide/Figures/trna1-DF6280.eps:5195: Fo ==> Of, for
data/infernal-1.1.3/documentation/userguide/Figures/trna1-DF6280.eps:5208: ot ==> to, of, or
data/infernal-1.1.3/documentation/userguide/Figures/trna1-DF6280.eps:5237: Ba ==> By, be
data/infernal-1.1.3/documentation/userguide/Figures/trna1-DF6280.eps:5277: nd ==> and, 2nd
data/infernal-1.1.3/documentation/userguide/Figures/trna1-DF6280.eps:5304: Ue ==> Use, due
data/infernal-1.1.3/documentation/userguide/Figures/trna1-DF6280.eps:5319: nD ==> and, 2nd
data/infernal-1.1.3/documentation/userguide/Figures/trna1-DF6280.eps:5340: hsI ==> his
data/infernal-1.1.3/documentation/userguide/Figures/trna1-DF6280.eps:5346: FO ==> OF, FOR
data/infernal-1.1.3/documentation/userguide/Figures/trna1-DF6280.eps:5370: te ==> the, be, we
data/infernal-1.1.3/documentation/userguide/Figures/trna1-DF6280.eps:5398: fO ==> of, for
data/infernal-1.1.3/documentation/userguide/Figures/trna1-DF6280.eps:5426: OT ==> TO, OF, OR
data/infernal-1.1.3/documentation/userguide/Figures/trna1-DF6280.eps:5536: bA ==> by, be
data/infernal-1.1.3/documentation/userguide/Figures/trna1-DF6280.eps:5542: DAtY ==> data, date
data/infernal-1.1.3/documentation/userguide/Figures/trna1-DF6280.eps:5593: fO ==> of, for
data/infernal-1.1.3/documentation/userguide/Figures/trna1-DF6280.eps:5607: VIE ==> VIA
data/infernal-1.1.3/documentation/userguide/Figures/trna1-DF6280.eps:5660: UnX ==> unix
data/infernal-1.1.3/documentation/userguide/Figures/trna1-DF6280.eps:5669: ba ==> by, be
data/infernal-1.1.3/documentation/userguide/Figures/trna1-DF6280.eps:5714: KNo ==> know
data/infernal-1.1.3/documentation/userguide/Figures/trna1-DF6280.eps:5732: iSt ==> is, it, its, it's, sit, list
data/infernal-1.1.3/documentation/userguide/Figures/trna1-DF6280.eps:5738: OT ==> TO, OF, OR
data/infernal-1.1.3/documentation/userguide/Figures/trna1-DF6280.eps:5738: uE ==> use, due
data/infernal-1.1.3/documentation/userguide/Figures/trna1-DF6280.eps:5748: fO ==> of, for
data/infernal-1.1.3/documentation/userguide/Figures/trna1-DF6280.eps:5767: ue ==> use, due
data/infernal-1.1.3/documentation/userguide/Figures/trna1-DF6280.eps:5770: alHa ==> alpha
data/infernal-1.1.3/documentation/userguide/Figures/trna1-DF6280.eps:5784: uE ==> use, due
data/infernal-1.1.3/documentation/userguide/Figures/trna1-DF6280.eps:5794: ND ==> AND, 2ND
data/infernal-1.1.3/documentation/userguide/Figures/trna1-DF6280.eps:5794: TE ==> THE, BE, WE
data/infernal-1.1.3/documentation/userguide/Figures/trna1-DF6280.eps:5797: Fo ==> Of, for
data/infernal-1.1.3/documentation/userguide/Figures/trna1-DF6280.eps:5808: Ot ==> To, of, or
data/infernal-1.1.3/documentation/userguide/Figures/trna1-DF6280.eps:5837: baLE ==> able
data/infernal-1.1.3/documentation/userguide/Figures/trna1-DF6280.eps:5873: UE ==> USE, DUE
data/infernal-1.1.3/documentation/userguide/Figures/trna1-DF6280.eps:5873: oT ==> to, of, or
data/infernal-1.1.3/documentation/userguide/Figures/trna1-DF6280.eps:5964: fo ==> of, for
data/infernal-1.1.3/documentation/userguide/Figures/trna1-DF6280.eps:6030: OWEr ==> lower, owner, over
data/infernal-1.1.3/documentation/userguide/Figures/trna1-DF6280.eps:6031: OT ==> TO, OF, OR
data/infernal-1.1.3/documentation/userguide/Figures/trna1-DF6280.eps:6077: fo ==> of, for
data/infernal-1.1.3/documentation/userguide/Figures/trna1-DF6280.eps:6109: ND ==> AND, 2ND
data/infernal-1.1.3/documentation/userguide/Figures/trna1-DF6280.eps:6136: onD ==> one
data/infernal-1.1.3/documentation/userguide/Figures/trna1-DF6280.eps:6160: MOr ==> more
data/infernal-1.1.3/documentation/userguide/Figures/trna1-DF6280.eps:6192: hDa ==> had
data/infernal-1.1.3/documentation/userguide/Figures/trna1-DF6280.eps:6225: Fo ==> Of, for
data/infernal-1.1.3/documentation/userguide/Figures/trna1-DF6280.eps:6297: uE ==> use, due
data/infernal-1.1.3/documentation/userguide/Figures/trna1-DF6280.eps:6317: tha ==> than, that, the
data/infernal-1.1.3/documentation/userguide/Figures/trna1-DF6280.eps:6325: TE ==> THE, BE, WE
data/infernal-1.1.3/documentation/userguide/Figures/trna1-DF6280.eps:6353: DAA ==> DATA
data/infernal-1.1.3/documentation/userguide/Figures/trna1-DF6280.eps:6427: Ue ==> Use, due
data/infernal-1.1.3/documentation/userguide/Figures/trna1-DF6280.eps:6435: fo ==> of, for
data/infernal-1.1.3/documentation/userguide/Figures/trna1-DF6280.eps:6438: OT ==> TO, OF, OR
data/infernal-1.1.3/documentation/userguide/Figures/trna1-DF6280.eps:6487: FOF ==> FOR
data/infernal-1.1.3/documentation/userguide/Figures/trna1-DF6280.eps:6542: Ba ==> By, be
data/infernal-1.1.3/documentation/userguide/Figures/trna1-DF6280.eps:6555: UE ==> USE, DUE
data/infernal-1.1.3/documentation/userguide/Figures/trna1-DF6280.eps:6557: BRE ==> BE, BRIE
data/infernal-1.1.3/documentation/userguide/Figures/trna1-DF6280.eps:6563: Te ==> The, be, we
data/infernal-1.1.3/documentation/userguide/Figures/trna1-DF6280.eps:6587: uE ==> use, due
data/infernal-1.1.3/documentation/userguide/Figures/trna1-DF6280.eps:6697: WIl ==> will, well
data/infernal-1.1.3/documentation/userguide/Figures/trna1-DF6280.eps:6709: Te ==> The, be, we
data/infernal-1.1.3/documentation/userguide/Figures/trna1-DF6280.eps:6772: UE ==> USE, DUE
data/infernal-1.1.3/documentation/userguide/Figures/trna1-DF6280.eps:6792: FO ==> OF, FOR
data/infernal-1.1.3/documentation/userguide/Figures/trna1-DF6280.eps:6830: oT ==> to, of, or
data/infernal-1.1.3/documentation/userguide/Figures/trna1-DF6280.eps:6863: ba ==> by, be
data/infernal-1.1.3/documentation/userguide/Figures/trna1-DF6280.eps:6863: ALS ==> ALSO
data/infernal-1.1.3/documentation/userguide/Figures/cm_graph.eps:50: nd ==> and, 2nd
data/infernal-1.1.3/documentation/userguide/Figures/cm_graph.eps:226: nd ==> and, 2nd
data/infernal-1.1.3/documentation/userguide/Figures/cm_graph.eps:227: nd ==> and, 2nd
data/infernal-1.1.3/documentation/userguide/Figures/cm_graph.eps:261: nd ==> and, 2nd
data/infernal-1.1.3/documentation/userguide/Figures/cm_graph.eps:262: nd ==> and, 2nd
data/infernal-1.1.3/documentation/userguide/Figures/cm_graph.eps:391: nd ==> and, 2nd
data/infernal-1.1.3/documentation/userguide/Figures/cm_graph.eps:397: nd ==> and, 2nd
data/infernal-1.1.3/documentation/userguide/Figures/cm_graph.eps:398: nd ==> and, 2nd
data/infernal-1.1.3/documentation/userguide/Figures/cm_graph.eps:406: nd ==> and, 2nd
data/infernal-1.1.3/documentation/userguide/Figures/cm_graph.eps:407: nd ==> and, 2nd
data/infernal-1.1.3/documentation/userguide/Figures/cm_graph.eps:408: nd ==> and, 2nd
data/infernal-1.1.3/documentation/userguide/Figures/cm_graph.eps:409: nd ==> and, 2nd
data/infernal-1.1.3/documentation/userguide/Figures/cm_graph.eps:410: nd ==> and, 2nd
data/infernal-1.1.3/documentation/userguide/Figures/cm_graph.eps:411: nd ==> and, 2nd
data/infernal-1.1.3/documentation/userguide/Figures/cm_graph.eps:412: nd ==> and, 2nd
data/infernal-1.1.3/documentation/userguide/Figures/cm_graph.eps:413: nd ==> and, 2nd
data/infernal-1.1.3/documentation/userguide/Figures/cm_graph.eps:414: nd ==> and, 2nd
data/infernal-1.1.3/documentation/userguide/Figures/cm_graph.eps:415: nd ==> and, 2nd
data/infernal-1.1.3/documentation/userguide/Figures/cm_graph.eps:416: nd ==> and, 2nd
data/infernal-1.1.3/documentation/userguide/Figures/cm_graph.eps:417: nd ==> and, 2nd
data/infernal-1.1.3/documentation/userguide/Figures/cm_graph.eps:418: nd ==> and, 2nd
data/infernal-1.1.3/documentation/userguide/Figures/cm_graph.eps:419: nd ==> and, 2nd
data/infernal-1.1.3/documentation/userguide/Figures/cm_graph.eps:420: nd ==> and, 2nd
data/infernal-1.1.3/documentation/userguide/Figures/cm_graph.eps:421: nd ==> and, 2nd
data/infernal-1.1.3/documentation/userguide/Figures/cm_graph.eps:422: nd ==> and, 2nd
data/infernal-1.1.3/documentation/userguide/Figures/cm_graph.eps:425: nd ==> and, 2nd
data/infernal-1.1.3/documentation/userguide/Figures/cm_graph.eps:430: nd ==> and, 2nd
data/infernal-1.1.3/documentation/userguide/Figures/cm_graph.eps:431: nd ==> and, 2nd
data/infernal-1.1.3/documentation/userguide/Figures/cm_graph.eps:432: nd ==> and, 2nd
data/infernal-1.1.3/documentation/userguide/Figures/cm_graph.eps:433: nd ==> and, 2nd
data/infernal-1.1.3/documentation/userguide/Figures/cm_graph.eps:435: nd ==> and, 2nd
data/infernal-1.1.3/documentation/userguide/Figures/cm_graph.eps:436: nd ==> and, 2nd
data/infernal-1.1.3/documentation/userguide/Figures/cm_graph.eps:439: nd ==> and, 2nd
data/infernal-1.1.3/documentation/userguide/Figures/cm_graph.eps:440: nd ==> and, 2nd
data/infernal-1.1.3/documentation/userguide/Figures/cm_graph.eps:441: nd ==> and, 2nd
data/infernal-1.1.3/documentation/userguide/Figures/cm_graph.eps:444: nd ==> and, 2nd
data/infernal-1.1.3/documentation/userguide/Figures/cm_graph.eps:2443: nd ==> and, 2nd
data/infernal-1.1.3/documentation/userguide/Figures/cm_graph.eps:2446: nd ==> and, 2nd
data/infernal-1.1.3/documentation/userguide/Figures/cm_graph.eps:2447: nd ==> and, 2nd
data/infernal-1.1.3/documentation/userguide/Figures/cm_graph.eps:2449: nd ==> and, 2nd
data/infernal-1.1.3/documentation/userguide/Figures/cm_graph.eps:2450: nd ==> and, 2nd
data/infernal-1.1.3/documentation/userguide/Figures/cm_graph.eps:2458: nd ==> and, 2nd
data/infernal-1.1.3/documentation/userguide/Figures/cm_graph.eps:2459: nd ==> and, 2nd
data/infernal-1.1.3/documentation/userguide/Figures/cm_graph.eps:2460: nd ==> and, 2nd
data/infernal-1.1.3/documentation/userguide/Figures/cm_graph.eps:2461: nd ==> and, 2nd
data/infernal-1.1.3/documentation/userguide/Figures/cm_graph.eps:2462: nd ==> and, 2nd
data/infernal-1.1.3/documentation/userguide/Figures/cm_graph.eps:2463: nd ==> and, 2nd
data/infernal-1.1.3/documentation/userguide/Figures/cm_graph.eps:2464: nd ==> and, 2nd
data/infernal-1.1.3/documentation/userguide/Figures/cm_graph.eps:2465: nd ==> and, 2nd
data/infernal-1.1.3/documentation/userguide/Figures/cm_graph.eps:2466: nd ==> and, 2nd
data/infernal-1.1.3/documentation/userguide/Figures/cm_graph.eps:2467: nd ==> and, 2nd
data/infernal-1.1.3/documentation/userguide/Figures/cm_graph.eps:2468: nd ==> and, 2nd
data/infernal-1.1.3/documentation/userguide/Figures/cm_graph.eps:2469: nd ==> and, 2nd
data/infernal-1.1.3/documentation/userguide/Figures/cm_graph.eps:2470: nd ==> and, 2nd
data/infernal-1.1.3/documentation/userguide/Figures/cm_graph.eps:2471: nd ==> and, 2nd
data/infernal-1.1.3/documentation/userguide/Figures/cm_graph.eps:2472: nd ==> and, 2nd
data/infernal-1.1.3/documentation/userguide/Figures/cm_graph.eps:2473: nd ==> and, 2nd
data/infernal-1.1.3/documentation/userguide/Figures/cm_graph.eps:2474: nd ==> and, 2nd
data/infernal-1.1.3/documentation/userguide/Figures/cm_graph.eps:3405: ND ==> AND, 2ND
data/infernal-1.1.3/documentation/userguide/Figures/cm_graph.eps:3410: ND ==> AND, 2ND
data/infernal-1.1.3/documentation/userguide/Figures/cm_graph.eps:3413: ND ==> AND, 2ND
data/infernal-1.1.3/documentation/userguide/Figures/cm_graph.eps:3420: ND ==> AND, 2ND
data/infernal-1.1.3/documentation/userguide/Figures/cm_graph.eps:3468: ND ==> AND, 2ND
data/infernal-1.1.3/documentation/userguide/Figures/cm_graph.eps:3470: ND ==> AND, 2ND
data/infernal-1.1.3/documentation/userguide/Figures/cm_graph.eps:3473: ND ==> AND, 2ND
data/infernal-1.1.3/documentation/userguide/Figures/cm_graph.eps:3520: ND ==> AND, 2ND
data/infernal-1.1.3/documentation/userguide/Figures/cm_graph.eps:3524: ND ==> AND, 2ND
data/infernal-1.1.3/documentation/userguide/Figures/cm_graph.eps:3569: ND ==> AND, 2ND
data/infernal-1.1.3/documentation/userguide/Figures/cm_graph.eps:3574: ND ==> AND, 2ND
data/infernal-1.1.3/documentation/userguide/Figures/cm_graph.eps:3620: ND ==> AND, 2ND
data/infernal-1.1.3/documentation/userguide/Figures/cm_graph.eps:3624: ND ==> AND, 2ND
data/infernal-1.1.3/documentation/userguide/Figures/cm_graph.eps:3671: ND ==> AND, 2ND
data/infernal-1.1.3/documentation/userguide/Figures/cm_graph.eps:3715: ND ==> AND, 2ND
data/infernal-1.1.3/documentation/userguide/Figures/cm_graph.eps:3762: ND ==> AND, 2ND
data/infernal-1.1.3/documentation/userguide/Figures/cm_graph.eps:3808: ND ==> AND, 2ND
data/infernal-1.1.3/documentation/userguide/Figures/cm_graph.eps:3853: ND ==> AND, 2ND
data/infernal-1.1.3/documentation/userguide/Figures/cm_graph.eps:3858: ND ==> AND, 2ND
data/infernal-1.1.3/documentation/userguide/Figures/cm_graph.eps:3925: ND ==> AND, 2ND
data/infernal-1.1.3/documentation/userguide/Figures/cm_graph.eps:4642: ND ==> AND, 2ND
data/infernal-1.1.3/documentation/userguide/Figures/cm_graph.eps:8762: ND ==> AND, 2ND
data/infernal-1.1.3/documentation/userguide/Figures/cm_graph.eps:8768: ND ==> AND, 2ND
data/infernal-1.1.3/documentation/userguide/Figures/cm_graph.eps:8771: ND ==> AND, 2ND
data/infernal-1.1.3/documentation/userguide/Figures/cm_graph.eps:8777: ND ==> AND, 2ND
data/infernal-1.1.3/documentation/userguide/Figures/cm_graph.eps:8784: ND ==> AND, 2ND
data/infernal-1.1.3/documentation/userguide/Figures/cm_graph.eps:8787: ND ==> AND, 2ND
data/infernal-1.1.3/documentation/userguide/Figures/cm_graph.eps:9031: ND ==> AND, 2ND
data/infernal-1.1.3/documentation/userguide/Figures/cm_graph.eps:9037: ND ==> AND, 2ND
data/infernal-1.1.3/documentation/userguide/Figures/cm_graph.eps:9045: ND ==> AND, 2ND
data/infernal-1.1.3/documentation/userguide/Figures/cm_graph.eps:9049: ND ==> AND, 2ND
data/infernal-1.1.3/documentation/userguide/Figures/cm_graph.eps:9055: ND ==> AND, 2ND
data/infernal-1.1.3/documentation/userguide/Figures/cm_graph.eps:9063: ND ==> AND, 2ND
data/infernal-1.1.3/documentation/userguide/Figures/cm_graph.eps:9067: ND ==> AND, 2ND
data/infernal-1.1.3/documentation/userguide/Figures/cm_graph.eps:9077: ND ==> AND, 2ND
data/infernal-1.1.3/documentation/userguide/Figures/cm_graph.eps:9085: ND ==> AND, 2ND
data/infernal-1.1.3/documentation/userguide/Figures/cm_graph.eps:9089: ND ==> AND, 2ND
data/infernal-1.1.3/documentation/userguide/Figures/cm_graph.eps:9098: ND ==> AND, 2ND
data/infernal-1.1.3/documentation/userguide/Figures/cm_graph.eps:9104: ND ==> AND, 2ND
data/infernal-1.1.3/documentation/userguide/Figures/cm_graph.eps:9107: ND ==> AND, 2ND
data/infernal-1.1.3/documentation/userguide/Figures/cm_graph.eps:9110: ND ==> AND, 2ND
data/infernal-1.1.3/documentation/userguide/Figures/cm_graph.eps:9117: ND ==> AND, 2ND
data/infernal-1.1.3/documentation/userguide/Figures/cm_graph.eps:9119: ND ==> AND, 2ND
data/infernal-1.1.3/documentation/userguide/Figures/cm_graph.eps:9122: ND ==> AND, 2ND
data/infernal-1.1.3/documentation/userguide/Figures/cm_graph.eps:9126: ND ==> AND, 2ND
data/infernal-1.1.3/documentation/userguide/Figures/cm_graph.eps:9129: ND ==> AND, 2ND
data/infernal-1.1.3/documentation/userguide/Figures/cm_graph.eps:9135: ND ==> AND, 2ND
data/infernal-1.1.3/documentation/userguide/Figures/cm_graph.eps:9314: ND ==> AND, 2ND
data/infernal-1.1.3/documentation/userguide/Figures/cm_graph.eps:9431: ND ==> AND, 2ND
data/infernal-1.1.3/documentation/userguide/Figures/cm_graph.eps:9599: ND ==> AND, 2ND
data/infernal-1.1.3/documentation/userguide/Figures/cm_graph.eps:9602: ND ==> AND, 2ND
data/infernal-1.1.3/documentation/userguide/Figures/cm_graph.eps:9607: ND ==> AND, 2ND
data/infernal-1.1.3/documentation/userguide/Figures/cm_graph.eps:9610: ND ==> AND, 2ND
data/infernal-1.1.3/documentation/userguide/Figures/cm_graph.eps:9612: ND ==> AND, 2ND
data/infernal-1.1.3/documentation/userguide/Figures/cm_graph.eps:9617: ND ==> AND, 2ND
data/infernal-1.1.3/documentation/userguide/Figures/cm_graph.eps:9624: ND ==> AND, 2ND
data/infernal-1.1.3/documentation/userguide/Figures/cm_graph.eps:9628: ND ==> AND, 2ND
data/infernal-1.1.3/documentation/userguide/Figures/cm_graph.eps:9635: ND ==> AND, 2ND
data/infernal-1.1.3/documentation/userguide/Figures/cm_graph.eps:9639: ND ==> AND, 2ND
data/infernal-1.1.3/documentation/userguide/Figures/cm_graph.eps:10666: nD ==> and, 2nd
data/infernal-1.1.3/documentation/userguide/Figures/cm_graph.eps:10709: UE ==> USE, DUE
data/infernal-1.1.3/documentation/userguide/Figures/cm_graph.eps:10726: fO ==> of, for
data/infernal-1.1.3/documentation/userguide/Figures/cm_graph.eps:10733: aKS ==> ask
data/infernal-1.1.3/documentation/userguide/Figures/cm_graph.eps:10770: Ue ==> Use, due
data/infernal-1.1.3/documentation/userguide/Figures/cm_graph.eps:10790: TOi ==> to, toy
data/infernal-1.1.3/documentation/userguide/Figures/cm_graph.eps:10914: bA ==> by, be
data/infernal-1.1.3/documentation/userguide/Figures/cm_graph.eps:10919: hTEY ==> they
data/infernal-1.1.3/documentation/userguide/Figures/cm_graph.eps:10919: bENG ==> being
data/infernal-1.1.3/documentation/userguide/Figures/cm_graph.eps:10925: BRE ==> BE, BRIE
data/infernal-1.1.3/documentation/userguide/Figures/cm_graph.eps:10954: Wil ==> Will, well
data/infernal-1.1.3/documentation/userguide/Figures/cm_graph.eps:10971: tE ==> the, be, we
data/infernal-1.1.3/documentation/userguide/Figures/cm_graph.eps:10979: OT ==> TO, OF, OR
data/infernal-1.1.3/documentation/userguide/Figures/cm_graph.eps:11004: nD ==> and, 2nd
data/infernal-1.1.3/documentation/userguide/Figures/cm_graph.eps:11034: fo ==> of, for
data/infernal-1.1.3/documentation/userguide/Figures/cm_graph.eps:11070: CPpP ==> cpp
data/infernal-1.1.3/documentation/userguide/Figures/cm_graph.eps:11082: TE ==> THE, BE, WE
data/infernal-1.1.3/documentation/userguide/Figures/cm_graph.eps:11082: Ue ==> Use, due
data/infernal-1.1.3/documentation/userguide/Figures/cm_graph.eps:11146: tBE ==> the
data/infernal-1.1.3/documentation/userguide/Figures/cm_graph.eps:11168: Ot ==> To, of, or
data/infernal-1.1.3/documentation/userguide/Figures/cm_graph.eps:11201: FO ==> OF, FOR
data/infernal-1.1.3/documentation/userguide/Figures/cm_graph.eps:11203: Ot ==> To, of, or
data/infernal-1.1.3/documentation/userguide/Figures/cm_graph.eps:11242: nd ==> and, 2nd
data/infernal-1.1.3/documentation/userguide/Figures/cm_graph.eps:11268: Ba ==> By, be
data/infernal-1.1.3/documentation/userguide/Figures/cm_graph.eps:11294: Oen ==> One
data/infernal-1.1.3/documentation/userguide/Figures/cm_graph.eps:11307: nD ==> and, 2nd
data/infernal-1.1.3/documentation/userguide/Figures/cm_graph.eps:11315: nD ==> and, 2nd
data/infernal-1.1.3/documentation/userguide/Figures/cm_graph.eps:11317: OTu ==> out
data/infernal-1.1.3/documentation/userguide/Figures/cm_graph.eps:11356: Nd ==> And, 2nd
data/infernal-1.1.3/documentation/userguide/Figures/cm_graph.eps:11363: Ue ==> Use, due
data/infernal-1.1.3/documentation/userguide/Figures/cm_graph.eps:11385: Nd ==> And, 2nd
data/infernal-1.1.3/documentation/userguide/Figures/cm_graph.eps:11427: nD ==> and, 2nd
data/infernal-1.1.3/documentation/userguide/Figures/cm_graph.eps:11464: oT ==> to, of, or
data/infernal-1.1.3/documentation/userguide/Figures/cm_graph.eps:11486: bA ==> by, be
data/infernal-1.1.3/documentation/userguide/Figures/cm_graph.eps:11491: Ue ==> Use, due
data/infernal-1.1.3/documentation/userguide/Figures/cm_graph.eps:11509: ue ==> use, due
data/infernal-1.1.3/documentation/userguide/Figures/cm_graph.eps:11542: ot ==> to, of, or
data/infernal-1.1.3/documentation/userguide/Figures/cm_graph.eps:11569: TE ==> THE, BE, WE
data/infernal-1.1.3/documentation/userguide/Figures/cm_graph.eps:11586: Nd ==> And, 2nd
data/infernal-1.1.3/documentation/userguide/Figures/cm_graph.eps:11607: FO ==> OF, FOR
data/infernal-1.1.3/documentation/userguide/Figures/cm_graph.eps:11620: Ba ==> By, be
data/infernal-1.1.3/documentation/userguide/Figures/cm_graph.eps:11637: oYu ==> you
data/infernal-1.1.3/documentation/userguide/Figures/cm_graph.eps:11644: BA ==> BY, BE
data/infernal-1.1.3/documentation/userguide/Figures/cm_graph.eps:11700: Fo ==> Of, for
data/infernal-1.1.3/documentation/userguide/Figures/cm_graph.eps:11709: LIK ==> LIKE, LICK, LINK
data/infernal-1.1.3/documentation/userguide/Figures/cm_graph.eps:11718: FO ==> OF, FOR
data/infernal-1.1.3/documentation/userguide/Figures/cm_graph.eps:11747: Ba ==> By, be
data/infernal-1.1.3/documentation/userguide/Figures/cm_graph.eps:11751: nD ==> and, 2nd
data/infernal-1.1.3/documentation/userguide/Figures/cm_graph.eps:11776: fo ==> of, for
data/infernal-1.1.3/documentation/userguide/Figures/cm_graph.eps:11818: BA ==> BY, BE
data/infernal-1.1.3/documentation/userguide/Figures/cm_graph.eps:11822: Nd ==> And, 2nd
data/infernal-1.1.3/documentation/userguide/Figures/cm_graph.eps:11833: lod ==> load
data/infernal-1.1.3/documentation/userguide/Figures/cm_graph.eps:11846: tE ==> the, be, we
data/infernal-1.1.3/documentation/userguide/Figures/cm_graph.eps:11918: Te ==> The, be, we
data/infernal-1.1.3/documentation/userguide/Figures/cm_graph.eps:11930: Te ==> The, be, we
data/infernal-1.1.3/documentation/userguide/Figures/cm_graph.eps:11934: uE ==> use, due
data/infernal-1.1.3/documentation/userguide/Figures/cm_graph.eps:11960: HeL ==> help, hell, heal
data/infernal-1.1.3/documentation/userguide/Figures/cm_graph.eps:12023: BA ==> BY, BE
data/infernal-1.1.3/documentation/userguide/Figures/cm_graph.eps:12024: Ba ==> By, be
data/infernal-1.1.3/documentation/userguide/Figures/cm_graph.eps:12058: uE ==> use, due
data/infernal-1.1.3/documentation/userguide/Figures/cm_graph.eps:12109: fo ==> of, for
data/infernal-1.1.3/documentation/userguide/Figures/cm_graph.eps:12110: BA ==> BY, BE
data/infernal-1.1.3/documentation/userguide/Figures/cm_graph.eps:12129: DaA ==> data
data/infernal-1.1.3/documentation/userguide/Figures/cm_graph.eps:12136: UE ==> USE, DUE
data/infernal-1.1.3/documentation/userguide/Figures/cm_graph.eps:12145: oT ==> to, of, or
data/infernal-1.1.3/documentation/userguide/Figures/cm_graph.eps:12201: Fo ==> Of, for
data/infernal-1.1.3/documentation/userguide/Figures/cm_nodetree.eps:50: nd ==> and, 2nd
data/infernal-1.1.3/documentation/userguide/Figures/cm_nodetree.eps:226: nd ==> and, 2nd
data/infernal-1.1.3/documentation/userguide/Figures/cm_nodetree.eps:227: nd ==> and, 2nd
data/infernal-1.1.3/documentation/userguide/Figures/cm_nodetree.eps:261: nd ==> and, 2nd
data/infernal-1.1.3/documentation/userguide/Figures/cm_nodetree.eps:262: nd ==> and, 2nd
data/infernal-1.1.3/documentation/userguide/Figures/cm_nodetree.eps:391: nd ==> and, 2nd
data/infernal-1.1.3/documentation/userguide/Figures/cm_nodetree.eps:397: nd ==> and, 2nd
data/infernal-1.1.3/documentation/userguide/Figures/cm_nodetree.eps:398: nd ==> and, 2nd
data/infernal-1.1.3/documentation/userguide/Figures/cm_nodetree.eps:406: nd ==> and, 2nd
data/infernal-1.1.3/documentation/userguide/Figures/cm_nodetree.eps:407: nd ==> and, 2nd
data/infernal-1.1.3/documentation/userguide/Figures/cm_nodetree.eps:408: nd ==> and, 2nd
data/infernal-1.1.3/documentation/userguide/Figures/cm_nodetree.eps:409: nd ==> and, 2nd
data/infernal-1.1.3/documentation/userguide/Figures/cm_nodetree.eps:410: nd ==> and, 2nd
data/infernal-1.1.3/documentation/userguide/Figures/cm_nodetree.eps:411: nd ==> and, 2nd
data/infernal-1.1.3/documentation/userguide/Figures/cm_nodetree.eps:412: nd ==> and, 2nd
data/infernal-1.1.3/documentation/userguide/Figures/cm_nodetree.eps:413: nd ==> and, 2nd
data/infernal-1.1.3/documentation/userguide/Figures/cm_nodetree.eps:414: nd ==> and, 2nd
data/infernal-1.1.3/documentation/userguide/Figures/cm_nodetree.eps:415: nd ==> and, 2nd
data/infernal-1.1.3/documentation/userguide/Figures/cm_nodetree.eps:416: nd ==> and, 2nd
data/infernal-1.1.3/documentation/userguide/Figures/cm_nodetree.eps:417: nd ==> and, 2nd
data/infernal-1.1.3/documentation/userguide/Figures/cm_nodetree.eps:418: nd ==> and, 2nd
data/infernal-1.1.3/documentation/userguide/Figures/cm_nodetree.eps:419: nd ==> and, 2nd
data/infernal-1.1.3/documentation/userguide/Figures/cm_nodetree.eps:420: nd ==> and, 2nd
data/infernal-1.1.3/documentation/userguide/Figures/cm_nodetree.eps:421: nd ==> and, 2nd
data/infernal-1.1.3/documentation/userguide/Figures/cm_nodetree.eps:422: nd ==> and, 2nd
data/infernal-1.1.3/documentation/userguide/Figures/cm_nodetree.eps:425: nd ==> and, 2nd
data/infernal-1.1.3/documentation/userguide/Figures/cm_nodetree.eps:430: nd ==> and, 2nd
data/infernal-1.1.3/documentation/userguide/Figures/cm_nodetree.eps:431: nd ==> and, 2nd
data/infernal-1.1.3/documentation/userguide/Figures/cm_nodetree.eps:432: nd ==> and, 2nd
data/infernal-1.1.3/documentation/userguide/Figures/cm_nodetree.eps:433: nd ==> and, 2nd
data/infernal-1.1.3/documentation/userguide/Figures/cm_nodetree.eps:435: nd ==> and, 2nd
data/infernal-1.1.3/documentation/userguide/Figures/cm_nodetree.eps:436: nd ==> and, 2nd
data/infernal-1.1.3/documentation/userguide/Figures/cm_nodetree.eps:439: nd ==> and, 2nd
data/infernal-1.1.3/documentation/userguide/Figures/cm_nodetree.eps:440: nd ==> and, 2nd
data/infernal-1.1.3/documentation/userguide/Figures/cm_nodetree.eps:441: nd ==> and, 2nd
data/infernal-1.1.3/documentation/userguide/Figures/cm_nodetree.eps:444: nd ==> and, 2nd
data/infernal-1.1.3/documentation/userguide/Figures/cm_nodetree.eps:2443: nd ==> and, 2nd
data/infernal-1.1.3/documentation/userguide/Figures/cm_nodetree.eps:2446: nd ==> and, 2nd
data/infernal-1.1.3/documentation/userguide/Figures/cm_nodetree.eps:2447: nd ==> and, 2nd
data/infernal-1.1.3/documentation/userguide/Figures/cm_nodetree.eps:2449: nd ==> and, 2nd
data/infernal-1.1.3/documentation/userguide/Figures/cm_nodetree.eps:2450: nd ==> and, 2nd
data/infernal-1.1.3/documentation/userguide/Figures/cm_nodetree.eps:2458: nd ==> and, 2nd
data/infernal-1.1.3/documentation/userguide/Figures/cm_nodetree.eps:2459: nd ==> and, 2nd
data/infernal-1.1.3/documentation/userguide/Figures/cm_nodetree.eps:2460: nd ==> and, 2nd
data/infernal-1.1.3/documentation/userguide/Figures/cm_nodetree.eps:2461: nd ==> and, 2nd
data/infernal-1.1.3/documentation/userguide/Figures/cm_nodetree.eps:2462: nd ==> and, 2nd
data/infernal-1.1.3/documentation/userguide/Figures/cm_nodetree.eps:2463: nd ==> and, 2nd
data/infernal-1.1.3/documentation/userguide/Figures/cm_nodetree.eps:2464: nd ==> and, 2nd
data/infernal-1.1.3/documentation/userguide/Figures/cm_nodetree.eps:2465: nd ==> and, 2nd
data/infernal-1.1.3/documentation/userguide/Figures/cm_nodetree.eps:2466: nd ==> and, 2nd
data/infernal-1.1.3/documentation/userguide/Figures/cm_nodetree.eps:2467: nd ==> and, 2nd
data/infernal-1.1.3/documentation/userguide/Figures/cm_nodetree.eps:2468: nd ==> and, 2nd
data/infernal-1.1.3/documentation/userguide/Figures/cm_nodetree.eps:2469: nd ==> and, 2nd
data/infernal-1.1.3/documentation/userguide/Figures/cm_nodetree.eps:2470: nd ==> and, 2nd
data/infernal-1.1.3/documentation/userguide/Figures/cm_nodetree.eps:2471: nd ==> and, 2nd
data/infernal-1.1.3/documentation/userguide/Figures/cm_nodetree.eps:2472: nd ==> and, 2nd
data/infernal-1.1.3/documentation/userguide/Figures/cm_nodetree.eps:2473: nd ==> and, 2nd
data/infernal-1.1.3/documentation/userguide/Figures/cm_nodetree.eps:2474: nd ==> and, 2nd
data/infernal-1.1.3/documentation/userguide/Figures/cm_nodetree.eps:3405: ND ==> AND, 2ND
data/infernal-1.1.3/documentation/userguide/Figures/cm_nodetree.eps:3410: ND ==> AND, 2ND
data/infernal-1.1.3/documentation/userguide/Figures/cm_nodetree.eps:3413: ND ==> AND, 2ND
data/infernal-1.1.3/documentation/userguide/Figures/cm_nodetree.eps:3418: ND ==> AND, 2ND
data/infernal-1.1.3/documentation/userguide/Figures/cm_nodetree.eps:3422: ND ==> AND, 2ND
data/infernal-1.1.3/documentation/userguide/Figures/cm_nodetree.eps:3425: ND ==> AND, 2ND
data/infernal-1.1.3/documentation/userguide/Figures/cm_nodetree.eps:3495: ND ==> AND, 2ND
data/infernal-1.1.3/documentation/userguide/Figures/cm_nodetree.eps:3499: ND ==> AND, 2ND
data/infernal-1.1.3/documentation/userguide/Figures/cm_nodetree.eps:3502: ND ==> AND, 2ND
data/infernal-1.1.3/documentation/userguide/Figures/cm_nodetree.eps:3507: ND ==> AND, 2ND
data/infernal-1.1.3/documentation/userguide/Figures/cm_nodetree.eps:3576: ND ==> AND, 2ND
data/infernal-1.1.3/documentation/userguide/Figures/cm_nodetree.eps:3622: ND ==> AND, 2ND
data/infernal-1.1.3/documentation/userguide/Figures/cm_nodetree.eps:3627: ND ==> AND, 2ND
data/infernal-1.1.3/documentation/userguide/Figures/cm_nodetree.eps:3630: ND ==> AND, 2ND
data/infernal-1.1.3/documentation/userguide/Figures/cm_nodetree.eps:3632: ND ==> AND, 2ND
data/infernal-1.1.3/documentation/userguide/Figures/cm_nodetree.eps:3748: ND ==> AND, 2ND
data/infernal-1.1.3/documentation/userguide/Figures/cm_nodetree.eps:3840: ND ==> AND, 2ND
data/infernal-1.1.3/documentation/userguide/Figures/cm_nodetree.eps:3888: ND ==> AND, 2ND
data/infernal-1.1.3/documentation/userguide/Figures/cm_nodetree.eps:3938: ND ==> AND, 2ND
data/infernal-1.1.3/documentation/userguide/Figures/cm_nodetree.eps:3987: ND ==> AND, 2ND
data/infernal-1.1.3/documentation/userguide/Figures/cm_nodetree.eps:4035: ND ==> AND, 2ND
data/infernal-1.1.3/documentation/userguide/Figures/cm_nodetree.eps:4078: ND ==> AND, 2ND
data/infernal-1.1.3/documentation/userguide/Figures/cm_nodetree.eps:4083: ND ==> AND, 2ND
data/infernal-1.1.3/documentation/userguide/Figures/cm_nodetree.eps:4130: ND ==> AND, 2ND
data/infernal-1.1.3/documentation/userguide/Figures/cm_nodetree.eps:4323: ND ==> AND, 2ND
data/infernal-1.1.3/documentation/userguide/Figures/cm_nodetree.eps:4327: ND ==> AND, 2ND
data/infernal-1.1.3/documentation/userguide/Figures/cm_nodetree.eps:5275: ND ==> AND, 2ND
data/infernal-1.1.3/documentation/userguide/Figures/cm_nodetree.eps:5278: ND ==> AND, 2ND
data/infernal-1.1.3/documentation/userguide/Figures/cm_nodetree.eps:5282: ND ==> AND, 2ND
data/infernal-1.1.3/documentation/userguide/Figures/cm_nodetree.eps:5287: ND ==> AND, 2ND
data/infernal-1.1.3/documentation/userguide/Figures/cm_nodetree.eps:5292: ND ==> AND, 2ND
data/infernal-1.1.3/documentation/userguide/Figures/cm_nodetree.eps:5299: ND ==> AND, 2ND
data/infernal-1.1.3/documentation/userguide/Figures/cm_nodetree.eps:5302: ND ==> AND, 2ND
data/infernal-1.1.3/documentation/userguide/Figures/cm_nodetree.eps:5307: ND ==> AND, 2ND
data/infernal-1.1.3/documentation/userguide/Figures/cm_nodetree.eps:5311: ND ==> AND, 2ND
data/infernal-1.1.3/documentation/userguide/Figures/cm_nodetree.eps:5315: ND ==> AND, 2ND
data/infernal-1.1.3/documentation/userguide/Figures/cm_nodetree.eps:5322: ND ==> AND, 2ND
data/infernal-1.1.3/documentation/userguide/Figures/cm_nodetree.eps:5326: ND ==> AND, 2ND
data/infernal-1.1.3/documentation/userguide/Figures/cm_nodetree.eps:5331: ND ==> AND, 2ND
data/infernal-1.1.3/documentation/userguide/Figures/cm_nodetree.eps:5431: TE ==> THE, BE, WE
data/infernal-1.1.3/documentation/userguide/Figures/cm_nodetree.eps:5434: otu ==> out
data/infernal-1.1.3/documentation/userguide/Figures/cm_nodetree.eps:5440: te ==> the, be, we
data/infernal-1.1.3/documentation/userguide/Figures/cm_nodetree.eps:5453: AdN ==> and
data/infernal-1.1.3/documentation/userguide/Figures/cm_nodetree.eps:5560: TE ==> THE, BE, WE
data/infernal-1.1.3/documentation/userguide/Figures/cm_nodetree.eps:5572: ot ==> to, of, or
data/infernal-1.1.3/documentation/userguide/Figures/cm_nodetree.eps:5612: UE ==> USE, DUE
data/infernal-1.1.3/documentation/userguide/Figures/cm_nodetree.eps:5616: Ue ==> Use, due
data/infernal-1.1.3/documentation/userguide/Figures/cm_nodetree.eps:5626: Te ==> The, be, we
data/infernal-1.1.3/documentation/userguide/Figures/cm_nodetree.eps:5658: ACi ==> acpi
data/infernal-1.1.3/documentation/userguide/Figures/cm_nodetree.eps:5661: Fo ==> Of, for
data/infernal-1.1.3/documentation/userguide/Figures/cm_nodetree.eps:5698: Te ==> The, be, we
data/infernal-1.1.3/documentation/userguide/Figures/cm_nodetree.eps:5715: nD ==> and, 2nd
data/infernal-1.1.3/documentation/userguide/Figures/cm_nodetree.eps:5838: URe ==> sure, ire, are, urea, rue
data/infernal-1.1.3/documentation/userguide/Figures/cm_nodetree.eps:5892: thn ==> then
data/infernal-1.1.3/documentation/userguide/Figures/cm_nodetree.eps:5909: bA ==> by, be
data/infernal-1.1.3/documentation/userguide/Figures/cm_nodetree.eps:5910: ba ==> by, be
data/infernal-1.1.3/documentation/userguide/Figures/cm_nodetree.eps:5929: nD ==> and, 2nd
data/infernal-1.1.3/documentation/userguide/Figures/cm_nodetree.eps:5942: OT ==> TO, OF, OR
data/infernal-1.1.3/documentation/userguide/Figures/cm_nodetree.eps:6001: Nd ==> And, 2nd
data/infernal-1.1.3/documentation/userguide/Figures/cm_nodetree.eps:6022: oT ==> to, of, or
data/infernal-1.1.3/documentation/userguide/Figures/cm_nodetree.eps:6033: OT ==> TO, OF, OR
data/infernal-1.1.3/documentation/userguide/Figures/cm_nodetree.eps:6159: oT ==> to, of, or
data/infernal-1.1.3/documentation/userguide/Figures/cm_nodetree.eps:6215: Ot ==> To, of, or
data/infernal-1.1.3/documentation/userguide/Figures/cm_nodetree.eps:6281: oT ==> to, of, or
data/infernal-1.1.3/documentation/userguide/Figures/cm_nodetree.eps:6296: Ot ==> To, of, or
data/infernal-1.1.3/documentation/userguide/Figures/cm_nodetree.eps:6297: NAMD ==> NAMED, NAME
data/infernal-1.1.3/documentation/userguide/Figures/cm_nodetree.eps:6309: fo ==> of, for
data/infernal-1.1.3/documentation/userguide/Figures/cm_nodetree.eps:6332: pTd ==> pdf
data/infernal-1.1.3/documentation/userguide/Figures/cm_nodetree.eps:6374: nd ==> and, 2nd
data/infernal-1.1.3/documentation/userguide/Figures/cm_nodetree.eps:6493: TE ==> THE, BE, WE
data/infernal-1.1.3/documentation/userguide/Figures/cm_nodetree.eps:6497: tE ==> the, be, we
data/infernal-1.1.3/documentation/userguide/Figures/cm_nodetree.eps:6507: ThW ==> the, thaw
data/infernal-1.1.3/documentation/userguide/Figures/cm_nodetree.eps:6530: fo ==> of, for
data/infernal-1.1.3/documentation/userguide/Figures/cm_nodetree.eps:6540: bA ==> by, be
data/infernal-1.1.3/documentation/userguide/Figures/cm_nodetree.eps:6558: ND ==> AND, 2ND
data/infernal-1.1.3/documentation/userguide/Figures/cm_nodetree.eps:6560: Nd ==> And, 2nd
data/infernal-1.1.3/documentation/userguide/Figures/cm_nodetree.eps:6594: BA ==> BY, BE
data/infernal-1.1.3/documentation/userguide/Figures/cm_nodetree.eps:6624: FO ==> OF, FOR
data/infernal-1.1.3/documentation/userguide/Figures/cm_nodetree.eps:6673: Cche ==> Cache
data/infernal-1.1.3/documentation/userguide/Figures/cm_nodetree.eps:6693: NiN ==> inn, min, bin, nine
data/infernal-1.1.3/documentation/userguide/Figures/cm_nodetree.eps:6713: UE ==> USE, DUE
data/infernal-1.1.3/documentation/userguide/Figures/cm_nodetree.eps:6726: Ot ==> To, of, or
data/infernal-1.1.3/documentation/userguide/Figures/cm_nodetree.eps:6734: tE ==> the, be, we
data/infernal-1.1.3/documentation/userguide/Figures/cm_nodetree.eps:6763: fo ==> of, for
data/infernal-1.1.3/documentation/userguide/Figures/cm_nodetree.eps:6767: TE ==> THE, BE, WE
data/infernal-1.1.3/documentation/userguide/Figures/cm_nodetree.eps:6782: bA ==> by, be
data/infernal-1.1.3/documentation/userguide/Figures/cm_nodetree.eps:6792: FO ==> OF, FOR
data/infernal-1.1.3/documentation/userguide/Figures/cm_nodetree.eps:6793: sOM ==> some
data/infernal-1.1.3/documentation/userguide/Figures/cm_nodetree.eps:6824: ue ==> use, due
data/infernal-1.1.3/documentation/userguide/Figures/input_alignment.eps:50: nd ==> and, 2nd
data/infernal-1.1.3/documentation/userguide/Figures/input_alignment.eps:226: nd ==> and, 2nd
data/infernal-1.1.3/documentation/userguide/Figures/input_alignment.eps:227: nd ==> and, 2nd
data/infernal-1.1.3/documentation/userguide/Figures/input_alignment.eps:261: nd ==> and, 2nd
data/infernal-1.1.3/documentation/userguide/Figures/input_alignment.eps:262: nd ==> and, 2nd
data/infernal-1.1.3/documentation/userguide/Figures/input_alignment.eps:391: nd ==> and, 2nd
data/infernal-1.1.3/documentation/userguide/Figures/input_alignment.eps:397: nd ==> and, 2nd
data/infernal-1.1.3/documentation/userguide/Figures/input_alignment.eps:398: nd ==> and, 2nd
data/infernal-1.1.3/documentation/userguide/Figures/input_alignment.eps:406: nd ==> and, 2nd
data/infernal-1.1.3/documentation/userguide/Figures/input_alignment.eps:407: nd ==> and, 2nd
data/infernal-1.1.3/documentation/userguide/Figures/input_alignment.eps:408: nd ==> and, 2nd
data/infernal-1.1.3/documentation/userguide/Figures/input_alignment.eps:409: nd ==> and, 2nd
data/infernal-1.1.3/documentation/userguide/Figures/input_alignment.eps:410: nd ==> and, 2nd
data/infernal-1.1.3/documentation/userguide/Figures/input_alignment.eps:411: nd ==> and, 2nd
data/infernal-1.1.3/documentation/userguide/Figures/input_alignment.eps:412: nd ==> and, 2nd
data/infernal-1.1.3/documentation/userguide/Figures/input_alignment.eps:413: nd ==> and, 2nd
data/infernal-1.1.3/documentation/userguide/Figures/input_alignment.eps:414: nd ==> and, 2nd
data/infernal-1.1.3/documentation/userguide/Figures/input_alignment.eps:415: nd ==> and, 2nd
data/infernal-1.1.3/documentation/userguide/Figures/input_alignment.eps:416: nd ==> and, 2nd
data/infernal-1.1.3/documentation/userguide/Figures/input_alignment.eps:417: nd ==> and, 2nd
data/infernal-1.1.3/documentation/userguide/Figures/input_alignment.eps:418: nd ==> and, 2nd
data/infernal-1.1.3/documentation/userguide/Figures/input_alignment.eps:419: nd ==> and, 2nd
data/infernal-1.1.3/documentation/userguide/Figures/input_alignment.eps:420: nd ==> and, 2nd
data/infernal-1.1.3/documentation/userguide/Figures/input_alignment.eps:421: nd ==> and, 2nd
data/infernal-1.1.3/documentation/userguide/Figures/input_alignment.eps:422: nd ==> and, 2nd
data/infernal-1.1.3/documentation/userguide/Figures/input_alignment.eps:425: nd ==> and, 2nd
data/infernal-1.1.3/documentation/userguide/Figures/input_alignment.eps:430: nd ==> and, 2nd
data/infernal-1.1.3/documentation/userguide/Figures/input_alignment.eps:431: nd ==> and, 2nd
data/infernal-1.1.3/documentation/userguide/Figures/input_alignment.eps:432: nd ==> and, 2nd
data/infernal-1.1.3/documentation/userguide/Figures/input_alignment.eps:433: nd ==> and, 2nd
data/infernal-1.1.3/documentation/userguide/Figures/input_alignment.eps:435: nd ==> and, 2nd
data/infernal-1.1.3/documentation/userguide/Figures/input_alignment.eps:436: nd ==> and, 2nd
data/infernal-1.1.3/documentation/userguide/Figures/input_alignment.eps:439: nd ==> and, 2nd
data/infernal-1.1.3/documentation/userguide/Figures/input_alignment.eps:440: nd ==> and, 2nd
data/infernal-1.1.3/documentation/userguide/Figures/input_alignment.eps:441: nd ==> and, 2nd
data/infernal-1.1.3/documentation/userguide/Figures/input_alignment.eps:444: nd ==> and, 2nd
data/infernal-1.1.3/documentation/userguide/Figures/input_alignment.eps:2443: nd ==> and, 2nd
data/infernal-1.1.3/documentation/userguide/Figures/input_alignment.eps:2446: nd ==> and, 2nd
data/infernal-1.1.3/documentation/userguide/Figures/input_alignment.eps:2447: nd ==> and, 2nd
data/infernal-1.1.3/documentation/userguide/Figures/input_alignment.eps:2449: nd ==> and, 2nd
data/infernal-1.1.3/documentation/userguide/Figures/input_alignment.eps:2450: nd ==> and, 2nd
data/infernal-1.1.3/documentation/userguide/Figures/input_alignment.eps:2458: nd ==> and, 2nd
data/infernal-1.1.3/documentation/userguide/Figures/input_alignment.eps:2459: nd ==> and, 2nd
data/infernal-1.1.3/documentation/userguide/Figures/input_alignment.eps:2460: nd ==> and, 2nd
data/infernal-1.1.3/documentation/userguide/Figures/input_alignment.eps:2461: nd ==> and, 2nd
data/infernal-1.1.3/documentation/userguide/Figures/input_alignment.eps:2462: nd ==> and, 2nd
data/infernal-1.1.3/documentation/userguide/Figures/input_alignment.eps:2463: nd ==> and, 2nd
data/infernal-1.1.3/documentation/userguide/Figures/input_alignment.eps:2464: nd ==> and, 2nd
data/infernal-1.1.3/documentation/userguide/Figures/input_alignment.eps:2465: nd ==> and, 2nd
data/infernal-1.1.3/documentation/userguide/Figures/input_alignment.eps:2466: nd ==> and, 2nd
data/infernal-1.1.3/documentation/userguide/Figures/input_alignment.eps:2467: nd ==> and, 2nd
data/infernal-1.1.3/documentation/userguide/Figures/input_alignment.eps:2468: nd ==> and, 2nd
data/infernal-1.1.3/documentation/userguide/Figures/input_alignment.eps:2469: nd ==> and, 2nd
data/infernal-1.1.3/documentation/userguide/Figures/input_alignment.eps:2470: nd ==> and, 2nd
data/infernal-1.1.3/documentation/userguide/Figures/input_alignment.eps:2471: nd ==> and, 2nd
data/infernal-1.1.3/documentation/userguide/Figures/input_alignment.eps:2472: nd ==> and, 2nd
data/infernal-1.1.3/documentation/userguide/Figures/input_alignment.eps:2473: nd ==> and, 2nd
data/infernal-1.1.3/documentation/userguide/Figures/input_alignment.eps:2474: nd ==> and, 2nd
data/infernal-1.1.3/documentation/userguide/Figures/input_alignment.eps:3384: ND ==> AND, 2ND
data/infernal-1.1.3/documentation/userguide/Figures/input_alignment.eps:3389: ND ==> AND, 2ND
data/infernal-1.1.3/documentation/userguide/Figures/input_alignment.eps:3391: ND ==> AND, 2ND
data/infernal-1.1.3/documentation/userguide/Figures/input_alignment.eps:3393: ND ==> AND, 2ND
data/infernal-1.1.3/documentation/userguide/Figures/input_alignment.eps:3395: ND ==> AND, 2ND
data/infernal-1.1.3/documentation/userguide/Figures/input_alignment.eps:3399: ND ==> AND, 2ND
data/infernal-1.1.3/documentation/userguide/Figures/input_alignment.eps:3402: ND ==> AND, 2ND
data/infernal-1.1.3/documentation/userguide/Figures/input_alignment.eps:3406: ND ==> AND, 2ND
data/infernal-1.1.3/documentation/userguide/Figures/input_alignment.eps:3411: ND ==> AND, 2ND
data/infernal-1.1.3/documentation/userguide/Figures/input_alignment.eps:3417: ND ==> AND, 2ND
data/infernal-1.1.3/documentation/userguide/Figures/input_alignment.eps:3420: ND ==> AND, 2ND
data/infernal-1.1.3/documentation/userguide/Figures/input_alignment.eps:3423: ND ==> AND, 2ND
data/infernal-1.1.3/documentation/userguide/Figures/input_alignment.eps:3426: ND ==> AND, 2ND
data/infernal-1.1.3/documentation/userguide/Figures/input_alignment.eps:3430: ND ==> AND, 2ND
data/infernal-1.1.3/documentation/userguide/Figures/input_alignment.eps:3435: ND ==> AND, 2ND
data/infernal-1.1.3/documentation/userguide/Figures/input_alignment.eps:3440: ND ==> AND, 2ND
data/infernal-1.1.3/documentation/userguide/Figures/input_alignment.eps:3443: ND ==> AND, 2ND
data/infernal-1.1.3/documentation/userguide/Figures/input_alignment.eps:3446: ND ==> AND, 2ND
data/infernal-1.1.3/documentation/userguide/Figures/input_alignment.eps:3449: ND ==> AND, 2ND
data/infernal-1.1.3/documentation/userguide/Figures/input_alignment.eps:3451: ND ==> AND, 2ND
data/infernal-1.1.3/documentation/userguide/Figures/input_alignment.eps:3456: ND ==> AND, 2ND
data/infernal-1.1.3/documentation/userguide/Figures/input_alignment.eps:3460: ND ==> AND, 2ND
data/infernal-1.1.3/documentation/userguide/Figures/input_alignment.eps:3465: ND ==> AND, 2ND
data/infernal-1.1.3/documentation/userguide/Figures/input_alignment.eps:3472: ND ==> AND, 2ND
data/infernal-1.1.3/documentation/userguide/Figures/input_alignment.eps:3477: ND ==> AND, 2ND
data/infernal-1.1.3/documentation/userguide/Figures/input_alignment.eps:3480: ND ==> AND, 2ND
data/infernal-1.1.3/documentation/userguide/Figures/input_alignment.eps:3482: ND ==> AND, 2ND
data/infernal-1.1.3/documentation/userguide/Figures/input_alignment.eps:3489: ND ==> AND, 2ND
data/infernal-1.1.3/documentation/userguide/Figures/input_alignment.eps:3494: ND ==> AND, 2ND
data/infernal-1.1.3/documentation/userguide/Figures/input_alignment.eps:3498: ND ==> AND, 2ND
data/infernal-1.1.3/documentation/userguide/Figures/input_alignment.eps:3505: ND ==> AND, 2ND
data/infernal-1.1.3/documentation/userguide/Figures/input_alignment.eps:3509: ND ==> AND, 2ND
data/infernal-1.1.3/documentation/userguide/Figures/input_alignment.eps:3516: ND ==> AND, 2ND
data/infernal-1.1.3/documentation/userguide/Figures/input_alignment.eps:3520: ND ==> AND, 2ND
data/infernal-1.1.3/documentation/userguide/Figures/input_alignment.eps:3525: ND ==> AND, 2ND
data/infernal-1.1.3/documentation/userguide/Figures/input_alignment.eps:3529: ND ==> AND, 2ND
data/infernal-1.1.3/documentation/userguide/Figures/input_alignment.eps:3934: ND ==> AND, 2ND
data/infernal-1.1.3/documentation/userguide/Figures/input_alignment.eps:4078: BA ==> BY, BE
data/infernal-1.1.3/documentation/userguide/Figures/input_alignment.eps:4078: nd ==> and, 2nd
data/infernal-1.1.3/documentation/userguide/Figures/input_alignment.eps:4094: Nd ==> And, 2nd
data/infernal-1.1.3/documentation/userguide/Figures/input_alignment.eps:4097: ue ==> use, due
data/infernal-1.1.3/documentation/userguide/Figures/input_alignment.eps:4143: FO ==> OF, FOR
data/infernal-1.1.3/documentation/userguide/Figures/input_alignment.eps:4233: Ba ==> By, be
data/infernal-1.1.3/documentation/userguide/Figures/input_alignment.eps:4236: fo ==> of, for
data/infernal-1.1.3/documentation/userguide/Figures/input_alignment.eps:4245: Ba ==> By, be
data/infernal-1.1.3/documentation/userguide/Figures/input_alignment.eps:4269: ot ==> to, of, or
data/infernal-1.1.3/documentation/userguide/Figures/input_alignment.eps:4280: nD ==> and, 2nd
data/infernal-1.1.3/documentation/userguide/Figures/input_alignment.eps:4287: aKE ==> ache
data/infernal-1.1.3/documentation/userguide/Figures/input_alignment.eps:4300: BA ==> BY, BE
data/infernal-1.1.3/documentation/userguide/Figures/input_alignment.eps:4326: OT ==> TO, OF, OR
data/infernal-1.1.3/documentation/userguide/Figures/input_alignment.eps:4337: daa ==> data
data/infernal-1.1.3/documentation/userguide/Figures/input_alignment.eps:4337: ue ==> use, due
data/infernal-1.1.3/documentation/userguide/Figures/input_alignment.eps:4337: Te ==> The, be, we
data/infernal-1.1.3/documentation/userguide/Figures/input_alignment.eps:4385: UE ==> USE, DUE
data/infernal-1.1.3/documentation/userguide/Figures/input_alignment.eps:4394: WAN ==> WANT
data/infernal-1.1.3/documentation/userguide/Figures/input_alignment.eps:4399: ot ==> to, of, or
data/infernal-1.1.3/documentation/userguide/Figures/input_alignment.eps:4422: Ue ==> Use, due
data/infernal-1.1.3/documentation/userguide/Figures/input_alignment.eps:4442: fo ==> of, for
data/infernal-1.1.3/documentation/userguide/Figures/input_alignment.eps:4454: Alo ==> Also
data/infernal-1.1.3/documentation/userguide/Figures/input_alignment.eps:4466: fo ==> of, for
data/infernal-1.1.3/documentation/userguide/Figures/input_alignment.eps:4472: Ue ==> Use, due
data/infernal-1.1.3/documentation/userguide/Figures/input_alignment.eps:4512: bA ==> by, be
data/infernal-1.1.3/documentation/userguide/Figures/input_alignment.eps:4601: OT ==> TO, OF, OR
data/infernal-1.1.3/documentation/userguide/Figures/input_alignment.eps:4634: FrO ==> for, from
data/infernal-1.1.3/documentation/userguide/Figures/input_alignment.eps:4645: nd ==> and, 2nd
data/infernal-1.1.3/documentation/userguide/Figures/input_alignment.eps:4652: ue ==> use, due
data/infernal-1.1.3/documentation/userguide/Figures/input_alignment.eps:4652: uE ==> use, due
data/infernal-1.1.3/documentation/userguide/Figures/input_alignment.eps:4676: Nd ==> And, 2nd
data/infernal-1.1.3/documentation/userguide/Figures/input_alignment.eps:4676: uE ==> use, due
data/infernal-1.1.3/documentation/userguide/Figures/input_alignment.eps:4689: BA ==> BY, BE
data/infernal-1.1.3/documentation/userguide/Figures/input_alignment.eps:4714: tE ==> the, be, we
data/infernal-1.1.3/documentation/userguide/Figures/input_alignment.eps:4732: TE ==> THE, BE, WE
data/infernal-1.1.3/documentation/userguide/Figures/input_alignment.eps:4773: bA ==> by, be
data/infernal-1.1.3/documentation/userguide/Figures/input_alignment.eps:4809: 1nd ==> 1st
data/infernal-1.1.3/documentation/userguide/Figures/input_alignment.eps:4849: AKe ==> ache
data/infernal-1.1.3/documentation/userguide/Figures/input_alignment.eps:4851: thre ==> three, there, their, the
data/infernal-1.1.3/documentation/userguide/Figures/input_alignment.eps:4854: bA ==> by, be
data/infernal-1.1.3/documentation/userguide/Figures/input_alignment.eps:4868: nd ==> and, 2nd
data/infernal-1.1.3/documentation/userguide/Figures/input_alignment.eps:4892: Mot ==> Not
data/infernal-1.1.3/documentation/userguide/Figures/input_alignment.eps:4903: Tbe ==> The
data/infernal-1.1.3/documentation/userguide/Figures/input_alignment.eps:4916: uE ==> use, due
data/infernal-1.1.3/documentation/userguide/Figures/input_alignment.eps:4924: EDn ==> end
data/infernal-1.1.3/documentation/userguide/Figures/input_alignment.eps:4965: 2St ==> 2nd
data/infernal-1.1.3/documentation/userguide/Figures/input_alignment.eps:4979: nWE ==> new
data/infernal-1.1.3/documentation/userguide/Figures/input_alignment.eps:5002: aDn ==> and
data/infernal-1.1.3/documentation/userguide/Figures/input_alignment.eps:5003: Lke ==> Like
data/infernal-1.1.3/documentation/userguide/Figures/input_alignment.eps:5056: TE ==> THE, BE, WE
data/infernal-1.1.3/documentation/userguide/Figures/input_alignment.eps:5073: nD ==> and, 2nd
data/infernal-1.1.3/documentation/userguide/Figures/input_alignment.eps:5094: Ehr ==> Her
data/infernal-1.1.3/documentation/userguide/Figures/input_alignment.eps:5133: DED ==> DEAD
data/infernal-1.1.3/documentation/userguide/Figures/input_alignment.eps:5160: THN ==> THEN
data/infernal-1.1.3/documentation/userguide/Figures/input_alignment.eps:5184: oT ==> to, of, or
data/infernal-1.1.3/documentation/userguide/Figures/input_alignment.eps:5186: ND ==> AND, 2ND
data/infernal-1.1.3/documentation/userguide/Figures/input_alignment.eps:5189: FO ==> OF, FOR
data/infernal-1.1.3/documentation/userguide/Figures/input_alignment.eps:5209: Yse ==> Yes, use, nyse
data/infernal-1.1.3/documentation/userguide/Figures/input_alignment.eps:5248: WAN ==> WANT
data/infernal-1.1.3/documentation/userguide/Figures/input_alignment.eps:5254: nD ==> and, 2nd
data/infernal-1.1.3/documentation/userguide/Figures/input_alignment.eps:5261: Ba ==> By, be
data/infernal-1.1.3/documentation/userguide/Figures/input_alignment.eps:5284: Ot ==> To, of, or
data/infernal-1.1.3/documentation/userguide/Figures/input_alignment.eps:5315: oT ==> to, of, or
data/infernal-1.1.3/documentation/userguide/Figures/input_alignment.eps:5324: WEW ==> WE
data/infernal-1.1.3/documentation/userguide/Figures/input_alignment.eps:5339: tE ==> the, be, we
data/infernal-1.1.3/documentation/userguide/Figures/input_alignment.eps:5375: AKs ==> ask
data/infernal-1.1.3/documentation/userguide/Figures/input_alignment.eps:5378: bA ==> by, be
data/infernal-1.1.3/documentation/userguide/Figures/input_alignment.eps:5385: NoO ==> no
data/infernal-1.1.3/documentation/userguide/Figures/parsetrees.eps:50: nd ==> and, 2nd
data/infernal-1.1.3/documentation/userguide/Figures/parsetrees.eps:226: nd ==> and, 2nd
data/infernal-1.1.3/documentation/userguide/Figures/parsetrees.eps:227: nd ==> and, 2nd
data/infernal-1.1.3/documentation/userguide/Figures/parsetrees.eps:261: nd ==> and, 2nd
data/infernal-1.1.3/documentation/userguide/Figures/parsetrees.eps:262: nd ==> and, 2nd
data/infernal-1.1.3/documentation/userguide/Figures/parsetrees.eps:391: nd ==> and, 2nd
data/infernal-1.1.3/documentation/userguide/Figures/parsetrees.eps:397: nd ==> and, 2nd
data/infernal-1.1.3/documentation/userguide/Figures/parsetrees.eps:398: nd ==> and, 2nd
data/infernal-1.1.3/documentation/userguide/Figures/parsetrees.eps:406: nd ==> and, 2nd
data/infernal-1.1.3/documentation/userguide/Figures/parsetrees.eps:407: nd ==> and, 2nd
data/infernal-1.1.3/documentation/userguide/Figures/parsetrees.eps:408: nd ==> and, 2nd
data/infernal-1.1.3/documentation/userguide/Figures/parsetrees.eps:409: nd ==> and, 2nd
data/infernal-1.1.3/documentation/userguide/Figures/parsetrees.eps:410: nd ==> and, 2nd
data/infernal-1.1.3/documentation/userguide/Figures/parsetrees.eps:411: nd ==> and, 2nd
data/infernal-1.1.3/documentation/userguide/Figures/parsetrees.eps:412: nd ==> and, 2nd
data/infernal-1.1.3/documentation/userguide/Figures/parsetrees.eps:413: nd ==> and, 2nd
data/infernal-1.1.3/documentation/userguide/Figures/parsetrees.eps:414: nd ==> and, 2nd
data/infernal-1.1.3/documentation/userguide/Figures/parsetrees.eps:415: nd ==> and, 2nd
data/infernal-1.1.3/documentation/userguide/Figures/parsetrees.eps:416: nd ==> and, 2nd
data/infernal-1.1.3/documentation/userguide/Figures/parsetrees.eps:417: nd ==> and, 2nd
data/infernal-1.1.3/documentation/userguide/Figures/parsetrees.eps:418: nd ==> and, 2nd
data/infernal-1.1.3/documentation/userguide/Figures/parsetrees.eps:419: nd ==> and, 2nd
data/infernal-1.1.3/documentation/userguide/Figures/parsetrees.eps:420: nd ==> and, 2nd
data/infernal-1.1.3/documentation/userguide/Figures/parsetrees.eps:421: nd ==> and, 2nd
data/infernal-1.1.3/documentation/userguide/Figures/parsetrees.eps:422: nd ==> and, 2nd
data/infernal-1.1.3/documentation/userguide/Figures/parsetrees.eps:425: nd ==> and, 2nd
data/infernal-1.1.3/documentation/userguide/Figures/parsetrees.eps:430: nd ==> and, 2nd
data/infernal-1.1.3/documentation/userguide/Figures/parsetrees.eps:431: nd ==> and, 2nd
data/infernal-1.1.3/documentation/userguide/Figures/parsetrees.eps:432: nd ==> and, 2nd
data/infernal-1.1.3/documentation/userguide/Figures/parsetrees.eps:433: nd ==> and, 2nd
data/infernal-1.1.3/documentation/userguide/Figures/parsetrees.eps:435: nd ==> and, 2nd
data/infernal-1.1.3/documentation/userguide/Figures/parsetrees.eps:436: nd ==> and, 2nd
data/infernal-1.1.3/documentation/userguide/Figures/parsetrees.eps:439: nd ==> and, 2nd
data/infernal-1.1.3/documentation/userguide/Figures/parsetrees.eps:440: nd ==> and, 2nd
data/infernal-1.1.3/documentation/userguide/Figures/parsetrees.eps:441: nd ==> and, 2nd
data/infernal-1.1.3/documentation/userguide/Figures/parsetrees.eps:444: nd ==> and, 2nd
data/infernal-1.1.3/documentation/userguide/Figures/parsetrees.eps:2443: nd ==> and, 2nd
data/infernal-1.1.3/documentation/userguide/Figures/parsetrees.eps:2446: nd ==> and, 2nd
data/infernal-1.1.3/documentation/userguide/Figures/parsetrees.eps:2447: nd ==> and, 2nd
data/infernal-1.1.3/documentation/userguide/Figures/parsetrees.eps:2449: nd ==> and, 2nd
data/infernal-1.1.3/documentation/userguide/Figures/parsetrees.eps:2450: nd ==> and, 2nd
data/infernal-1.1.3/documentation/userguide/Figures/parsetrees.eps:2458: nd ==> and, 2nd
data/infernal-1.1.3/documentation/userguide/Figures/parsetrees.eps:2459: nd ==> and, 2nd
data/infernal-1.1.3/documentation/userguide/Figures/parsetrees.eps:2460: nd ==> and, 2nd
data/infernal-1.1.3/documentation/userguide/Figures/parsetrees.eps:2461: nd ==> and, 2nd
data/infernal-1.1.3/documentation/userguide/Figures/parsetrees.eps:2462: nd ==> and, 2nd
data/infernal-1.1.3/documentation/userguide/Figures/parsetrees.eps:2463: nd ==> and, 2nd
data/infernal-1.1.3/documentation/userguide/Figures/parsetrees.eps:2464: nd ==> and, 2nd
data/infernal-1.1.3/documentation/userguide/Figures/parsetrees.eps:2465: nd ==> and, 2nd
data/infernal-1.1.3/documentation/userguide/Figures/parsetrees.eps:2466: nd ==> and, 2nd
data/infernal-1.1.3/documentation/userguide/Figures/parsetrees.eps:2467: nd ==> and, 2nd
data/infernal-1.1.3/documentation/userguide/Figures/parsetrees.eps:2468: nd ==> and, 2nd
data/infernal-1.1.3/documentation/userguide/Figures/parsetrees.eps:2469: nd ==> and, 2nd
data/infernal-1.1.3/documentation/userguide/Figures/parsetrees.eps:2470: nd ==> and, 2nd
data/infernal-1.1.3/documentation/userguide/Figures/parsetrees.eps:2471: nd ==> and, 2nd
data/infernal-1.1.3/documentation/userguide/Figures/parsetrees.eps:2472: nd ==> and, 2nd
data/infernal-1.1.3/documentation/userguide/Figures/parsetrees.eps:2473: nd ==> and, 2nd
data/infernal-1.1.3/documentation/userguide/Figures/parsetrees.eps:2474: nd ==> and, 2nd
data/infernal-1.1.3/documentation/userguide/Figures/parsetrees.eps:3405: ND ==> AND, 2ND
data/infernal-1.1.3/documentation/userguide/Figures/parsetrees.eps:3410: ND ==> AND, 2ND
data/infernal-1.1.3/documentation/userguide/Figures/parsetrees.eps:3413: ND ==> AND, 2ND
data/infernal-1.1.3/documentation/userguide/Figures/parsetrees.eps:3420: ND ==> AND, 2ND
data/infernal-1.1.3/documentation/userguide/Figures/parsetrees.eps:3468: ND ==> AND, 2ND
data/infernal-1.1.3/documentation/userguide/Figures/parsetrees.eps:3471: ND ==> AND, 2ND
data/infernal-1.1.3/documentation/userguide/Figures/parsetrees.eps:3476: ND ==> AND, 2ND
data/infernal-1.1.3/documentation/userguide/Figures/parsetrees.eps:3521: ND ==> AND, 2ND
data/infernal-1.1.3/documentation/userguide/Figures/parsetrees.eps:3565: ND ==> AND, 2ND
data/infernal-1.1.3/documentation/userguide/Figures/parsetrees.eps:3570: ND ==> AND, 2ND
data/infernal-1.1.3/documentation/userguide/Figures/parsetrees.eps:3636: ND ==> AND, 2ND
data/infernal-1.1.3/documentation/userguide/Figures/parsetrees.eps:3640: ND ==> AND, 2ND
data/infernal-1.1.3/documentation/userguide/Figures/parsetrees.eps:3688: ND ==> AND, 2ND
data/infernal-1.1.3/documentation/userguide/Figures/parsetrees.eps:3733: ND ==> AND, 2ND
data/infernal-1.1.3/documentation/userguide/Figures/parsetrees.eps:3800: ND ==> AND, 2ND
data/infernal-1.1.3/documentation/userguide/Figures/parsetrees.eps:3846: ND ==> AND, 2ND
data/infernal-1.1.3/documentation/userguide/Figures/parsetrees.eps:3892: ND ==> AND, 2ND
data/infernal-1.1.3/documentation/userguide/Figures/parsetrees.eps:3959: ND ==> AND, 2ND
data/infernal-1.1.3/documentation/userguide/Figures/parsetrees.eps:3962: ND ==> AND, 2ND
data/infernal-1.1.3/documentation/userguide/Figures/parsetrees.eps:4197: ND ==> AND, 2ND
data/infernal-1.1.3/documentation/userguide/Figures/parsetrees.eps:4202: ND ==> AND, 2ND
data/infernal-1.1.3/documentation/userguide/Figures/parsetrees.eps:4207: ND ==> AND, 2ND
data/infernal-1.1.3/documentation/userguide/Figures/parsetrees.eps:4210: ND ==> AND, 2ND
data/infernal-1.1.3/documentation/userguide/Figures/parsetrees.eps:4313: ND ==> AND, 2ND
data/infernal-1.1.3/documentation/userguide/Figures/parsetrees.eps:4896: ND ==> AND, 2ND
data/infernal-1.1.3/documentation/userguide/Figures/parsetrees.eps:5549: ND ==> AND, 2ND
data/infernal-1.1.3/documentation/userguide/Figures/parsetrees.eps:5554: ND ==> AND, 2ND
data/infernal-1.1.3/documentation/userguide/Figures/parsetrees.eps:5558: ND ==> AND, 2ND
data/infernal-1.1.3/documentation/userguide/Figures/parsetrees.eps:5563: ND ==> AND, 2ND
data/infernal-1.1.3/documentation/userguide/Figures/parsetrees.eps:5568: ND ==> AND, 2ND
data/infernal-1.1.3/documentation/userguide/Figures/parsetrees.eps:5575: ND ==> AND, 2ND
data/infernal-1.1.3/documentation/userguide/Figures/parsetrees.eps:5580: ND ==> AND, 2ND
data/infernal-1.1.3/documentation/userguide/Figures/parsetrees.eps:5584: ND ==> AND, 2ND
data/infernal-1.1.3/documentation/userguide/Figures/parsetrees.eps:5588: ND ==> AND, 2ND
data/infernal-1.1.3/documentation/userguide/Figures/parsetrees.eps:5595: ND ==> AND, 2ND
data/infernal-1.1.3/documentation/userguide/Figures/parsetrees.eps:5600: ND ==> AND, 2ND
data/infernal-1.1.3/documentation/userguide/Figures/parsetrees.eps:5772: tE ==> the, be, we
data/infernal-1.1.3/documentation/userguide/Figures/parsetrees.eps:5805: ue ==> use, due
data/infernal-1.1.3/documentation/userguide/Figures/parsetrees.eps:5822: ba ==> by, be
data/infernal-1.1.3/documentation/userguide/Figures/parsetrees.eps:5843: Ue ==> Use, due
data/infernal-1.1.3/documentation/userguide/Figures/parsetrees.eps:5863: TOi ==> to, toy
data/infernal-1.1.3/documentation/userguide/Figures/parsetrees.eps:5869: tbE ==> the
data/infernal-1.1.3/documentation/userguide/Figures/parsetrees.eps:5987: bA ==> by, be
data/infernal-1.1.3/documentation/userguide/Figures/parsetrees.eps:5990: Ue ==> Use, due
data/infernal-1.1.3/documentation/userguide/Figures/parsetrees.eps:6016: Otu ==> Out
data/infernal-1.1.3/documentation/userguide/Figures/parsetrees.eps:6025: oT ==> to, of, or
data/infernal-1.1.3/documentation/userguide/Figures/parsetrees.eps:6039: ot ==> to, of, or
data/infernal-1.1.3/documentation/userguide/Figures/parsetrees.eps:6069: te ==> the, be, we
data/infernal-1.1.3/documentation/userguide/Figures/parsetrees.eps:6073: ans ==> and
data/infernal-1.1.3/documentation/userguide/Figures/parsetrees.eps:6077: bA ==> by, be
data/infernal-1.1.3/documentation/userguide/Figures/parsetrees.eps:6082: BA ==> BY, BE
data/infernal-1.1.3/documentation/userguide/Figures/parsetrees.eps:6093: ba ==> by, be
data/infernal-1.1.3/documentation/userguide/Figures/parsetrees.eps:6095: bA ==> by, be
data/infernal-1.1.3/documentation/userguide/Figures/parsetrees.eps:6099: TE ==> THE, BE, WE
data/infernal-1.1.3/documentation/userguide/Figures/parsetrees.eps:6110: Te ==> The, be, we
data/infernal-1.1.3/documentation/userguide/Figures/parsetrees.eps:6136: adN ==> and
data/infernal-1.1.3/documentation/userguide/Figures/parsetrees.eps:6168: tE ==> the, be, we
data/infernal-1.1.3/documentation/userguide/Figures/parsetrees.eps:6174: ot ==> to, of, or
data/infernal-1.1.3/documentation/userguide/Figures/parsetrees.eps:6236: ba ==> by, be
data/infernal-1.1.3/documentation/userguide/Figures/parsetrees.eps:6268: TE ==> THE, BE, WE
data/infernal-1.1.3/documentation/userguide/Figures/parsetrees.eps:6281: ot ==> to, of, or
data/infernal-1.1.3/documentation/userguide/Figures/parsetrees.eps:6282: Nd ==> And, 2nd
data/infernal-1.1.3/documentation/userguide/Figures/parsetrees.eps:6319: oT ==> to, of, or
data/infernal-1.1.3/documentation/userguide/Figures/parsetrees.eps:6333: ba ==> by, be
data/infernal-1.1.3/documentation/userguide/Figures/parsetrees.eps:6334: Te ==> The, be, we
data/infernal-1.1.3/documentation/userguide/Figures/parsetrees.eps:6365: ot ==> to, of, or
data/infernal-1.1.3/documentation/userguide/Figures/parsetrees.eps:6377: ba ==> by, be
data/infernal-1.1.3/documentation/userguide/Figures/parsetrees.eps:6392: nD ==> and, 2nd
data/infernal-1.1.3/documentation/userguide/Figures/parsetrees.eps:6408: ND ==> AND, 2ND
data/infernal-1.1.3/documentation/userguide/Figures/parsetrees.eps:6427: OT ==> TO, OF, OR
data/infernal-1.1.3/documentation/userguide/Figures/parsetrees.eps:6439: EDn ==> end
data/infernal-1.1.3/documentation/userguide/Figures/parsetrees.eps:6455: BA ==> BY, BE
data/infernal-1.1.3/documentation/userguide/Figures/parsetrees.eps:6469: TE ==> THE, BE, WE
data/infernal-1.1.3/documentation/userguide/Figures/parsetrees.eps:6497: Ane ==> And
data/infernal-1.1.3/documentation/userguide/Figures/parsetrees.eps:6539: Wee ==> We
data/infernal-1.1.3/documentation/userguide/Figures/parsetrees.eps:6553: Aci ==> Acpi
data/infernal-1.1.3/documentation/userguide/Figures/parsetrees.eps:6564: Nd ==> And, 2nd
data/infernal-1.1.3/documentation/userguide/Figures/parsetrees.eps:6571: UE ==> USE, DUE
data/infernal-1.1.3/documentation/userguide/Figures/parsetrees.eps:6576: ot ==> to, of, or
data/infernal-1.1.3/documentation/userguide/Figures/parsetrees.eps:6616: tHQ ==> the
data/infernal-1.1.3/documentation/userguide/Figures/parsetrees.eps:6619: EHR ==> HER
data/infernal-1.1.3/documentation/userguide/Figures/parsetrees.eps:6629: Te ==> The, be, we
data/infernal-1.1.3/documentation/userguide/Figures/parsetrees.eps:6711: tE ==> the, be, we
data/infernal-1.1.3/documentation/userguide/Figures/parsetrees.eps:6721: OTU ==> OUT
data/infernal-1.1.3/documentation/userguide/Figures/parsetrees.eps:6742: ot ==> to, of, or
data/infernal-1.1.3/documentation/userguide/Figures/parsetrees.eps:6752: Fo ==> Of, for
data/infernal-1.1.3/documentation/userguide/Figures/parsetrees.eps:6842: te ==> the, be, we
data/infernal-1.1.3/documentation/userguide/Figures/parsetrees.eps:6905: oT ==> to, of, or
data/infernal-1.1.3/documentation/userguide/Figures/parsetrees.eps:6921: fO ==> of, for
data/infernal-1.1.3/documentation/userguide/Figures/parsetrees.eps:6956: Fo ==> Of, for
data/infernal-1.1.3/documentation/userguide/Figures/parsetrees.eps:7005: FO ==> OF, FOR
data/infernal-1.1.3/documentation/userguide/Figures/rna_elements.eps:49: nd ==> and, 2nd
data/infernal-1.1.3/documentation/userguide/Figures/rna_elements.eps:225: nd ==> and, 2nd
data/infernal-1.1.3/documentation/userguide/Figures/rna_elements.eps:226: nd ==> and, 2nd
data/infernal-1.1.3/documentation/userguide/Figures/rna_elements.eps:260: nd ==> and, 2nd
data/infernal-1.1.3/documentation/userguide/Figures/rna_elements.eps:261: nd ==> and, 2nd
data/infernal-1.1.3/documentation/userguide/Figures/rna_elements.eps:390: nd ==> and, 2nd
data/infernal-1.1.3/documentation/userguide/Figures/rna_elements.eps:396: nd ==> and, 2nd
data/infernal-1.1.3/documentation/userguide/Figures/rna_elements.eps:397: nd ==> and, 2nd
data/infernal-1.1.3/documentation/userguide/Figures/rna_elements.eps:405: nd ==> and, 2nd
data/infernal-1.1.3/documentation/userguide/Figures/rna_elements.eps:406: nd ==> and, 2nd
data/infernal-1.1.3/documentation/userguide/Figures/rna_elements.eps:407: nd ==> and, 2nd
data/infernal-1.1.3/documentation/userguide/Figures/rna_elements.eps:408: nd ==> and, 2nd
data/infernal-1.1.3/documentation/userguide/Figures/rna_elements.eps:409: nd ==> and, 2nd
data/infernal-1.1.3/documentation/userguide/Figures/rna_elements.eps:410: nd ==> and, 2nd
data/infernal-1.1.3/documentation/userguide/Figures/rna_elements.eps:411: nd ==> and, 2nd
data/infernal-1.1.3/documentation/userguide/Figures/rna_elements.eps:412: nd ==> and, 2nd
data/infernal-1.1.3/documentation/userguide/Figures/rna_elements.eps:413: nd ==> and, 2nd
data/infernal-1.1.3/documentation/userguide/Figures/rna_elements.eps:414: nd ==> and, 2nd
data/infernal-1.1.3/documentation/userguide/Figures/rna_elements.eps:415: nd ==> and, 2nd
data/infernal-1.1.3/documentation/userguide/Figures/rna_elements.eps:416: nd ==> and, 2nd
data/infernal-1.1.3/documentation/userguide/Figures/rna_elements.eps:417: nd ==> and, 2nd
data/infernal-1.1.3/documentation/userguide/Figures/rna_elements.eps:418: nd ==> and, 2nd
data/infernal-1.1.3/documentation/userguide/Figures/rna_elements.eps:419: nd ==> and, 2nd
data/infernal-1.1.3/documentation/userguide/Figures/rna_elements.eps:420: nd ==> and, 2nd
data/infernal-1.1.3/documentation/userguide/Figures/rna_elements.eps:421: nd ==> and, 2nd
data/infernal-1.1.3/documentation/userguide/Figures/rna_elements.eps:424: nd ==> and, 2nd
data/infernal-1.1.3/documentation/userguide/Figures/rna_elements.eps:429: nd ==> and, 2nd
data/infernal-1.1.3/documentation/userguide/Figures/rna_elements.eps:430: nd ==> and, 2nd
data/infernal-1.1.3/documentation/userguide/Figures/rna_elements.eps:431: nd ==> and, 2nd
data/infernal-1.1.3/documentation/userguide/Figures/rna_elements.eps:432: nd ==> and, 2nd
data/infernal-1.1.3/documentation/userguide/Figures/rna_elements.eps:434: nd ==> and, 2nd
data/infernal-1.1.3/documentation/userguide/Figures/rna_elements.eps:435: nd ==> and, 2nd
data/infernal-1.1.3/documentation/userguide/Figures/rna_elements.eps:438: nd ==> and, 2nd
data/infernal-1.1.3/documentation/userguide/Figures/rna_elements.eps:439: nd ==> and, 2nd
data/infernal-1.1.3/documentation/userguide/Figures/rna_elements.eps:440: nd ==> and, 2nd
data/infernal-1.1.3/documentation/userguide/Figures/rna_elements.eps:443: nd ==> and, 2nd
data/infernal-1.1.3/documentation/userguide/Figures/rna_elements.eps:2442: nd ==> and, 2nd
data/infernal-1.1.3/documentation/userguide/Figures/rna_elements.eps:2445: nd ==> and, 2nd
data/infernal-1.1.3/documentation/userguide/Figures/rna_elements.eps:2446: nd ==> and, 2nd
data/infernal-1.1.3/documentation/userguide/Figures/rna_elements.eps:2448: nd ==> and, 2nd
data/infernal-1.1.3/documentation/userguide/Figures/rna_elements.eps:2449: nd ==> and, 2nd
data/infernal-1.1.3/documentation/userguide/Figures/rna_elements.eps:2457: nd ==> and, 2nd
data/infernal-1.1.3/documentation/userguide/Figures/rna_elements.eps:2458: nd ==> and, 2nd
data/infernal-1.1.3/documentation/userguide/Figures/rna_elements.eps:2459: nd ==> and, 2nd
data/infernal-1.1.3/documentation/userguide/Figures/rna_elements.eps:2460: nd ==> and, 2nd
data/infernal-1.1.3/documentation/userguide/Figures/rna_elements.eps:2461: nd ==> and, 2nd
data/infernal-1.1.3/documentation/userguide/Figures/rna_elements.eps:2462: nd ==> and, 2nd
data/infernal-1.1.3/documentation/userguide/Figures/rna_elements.eps:2463: nd ==> and, 2nd
data/infernal-1.1.3/documentation/userguide/Figures/rna_elements.eps:2464: nd ==> and, 2nd
data/infernal-1.1.3/documentation/userguide/Figures/rna_elements.eps:2465: nd ==> and, 2nd
data/infernal-1.1.3/documentation/userguide/Figures/rna_elements.eps:2466: nd ==> and, 2nd
data/infernal-1.1.3/documentation/userguide/Figures/rna_elements.eps:2467: nd ==> and, 2nd
data/infernal-1.1.3/documentation/userguide/Figures/rna_elements.eps:2468: nd ==> and, 2nd
data/infernal-1.1.3/documentation/userguide/Figures/rna_elements.eps:2469: nd ==> and, 2nd
data/infernal-1.1.3/documentation/userguide/Figures/rna_elements.eps:2470: nd ==> and, 2nd
data/infernal-1.1.3/documentation/userguide/Figures/rna_elements.eps:2471: nd ==> and, 2nd
data/infernal-1.1.3/documentation/userguide/Figures/rna_elements.eps:2472: nd ==> and, 2nd
data/infernal-1.1.3/documentation/userguide/Figures/rna_elements.eps:2473: nd ==> and, 2nd
data/infernal-1.1.3/documentation/userguide/Figures/rna_elements.eps:3983: ND ==> AND, 2ND
data/infernal-1.1.3/documentation/userguide/Figures/rna_elements.eps:3989: ND ==> AND, 2ND
data/infernal-1.1.3/documentation/userguide/Figures/rna_elements.eps:3991: ND ==> AND, 2ND
data/infernal-1.1.3/documentation/userguide/Figures/rna_elements.eps:3993: ND ==> AND, 2ND
data/infernal-1.1.3/documentation/userguide/Figures/rna_elements.eps:4003: ND ==> AND, 2ND
data/infernal-1.1.3/documentation/userguide/Figures/rna_elements.eps:4009: ND ==> AND, 2ND
data/infernal-1.1.3/documentation/userguide/Figures/rna_elements.eps:4015: ND ==> AND, 2ND
data/infernal-1.1.3/documentation/userguide/Figures/rna_elements.eps:4022: ND ==> AND, 2ND
data/infernal-1.1.3/documentation/userguide/Figures/rna_elements.eps:4028: ND ==> AND, 2ND
data/infernal-1.1.3/documentation/userguide/Figures/rna_elements.eps:4036: ND ==> AND, 2ND
data/infernal-1.1.3/documentation/userguide/Figures/rna_elements.eps:4041: ND ==> AND, 2ND
data/infernal-1.1.3/documentation/userguide/Figures/rna_elements.eps:4044: ND ==> AND, 2ND
data/infernal-1.1.3/documentation/userguide/Figures/rna_elements.eps:4046: ND ==> AND, 2ND
data/infernal-1.1.3/documentation/userguide/Figures/rna_elements.eps:4053: ND ==> AND, 2ND
data/infernal-1.1.3/documentation/userguide/Figures/rna_elements.eps:4058: ND ==> AND, 2ND
data/infernal-1.1.3/documentation/userguide/Figures/rna_elements.eps:4064: ND ==> AND, 2ND
data/infernal-1.1.3/documentation/userguide/Figures/rna_elements.eps:4071: ND ==> AND, 2ND
data/infernal-1.1.3/documentation/userguide/Figures/rna_elements.eps:4075: ND ==> AND, 2ND
data/infernal-1.1.3/documentation/userguide/Figures/rna_elements.eps:4084: ND ==> AND, 2ND
data/infernal-1.1.3/documentation/userguide/Figures/rna_elements.eps:4089: ND ==> AND, 2ND
data/infernal-1.1.3/documentation/userguide/Figures/rna_elements.eps:4094: ND ==> AND, 2ND
data/infernal-1.1.3/documentation/userguide/Figures/rna_elements.eps:4326: bA ==> by, be
data/infernal-1.1.3/documentation/userguide/Figures/rna_elements.eps:4360: OT ==> TO, OF, OR
data/infernal-1.1.3/documentation/userguide/Figures/rna_elements.eps:4407: BA ==> BY, BE
data/infernal-1.1.3/documentation/userguide/Figures/rna_elements.eps:4428: ue ==> use, due
data/infernal-1.1.3/documentation/userguide/Figures/rna_elements.eps:4441: DAa ==> data
data/infernal-1.1.3/documentation/userguide/Figures/rna_elements.eps:4466: OT ==> TO, OF, OR
data/infernal-1.1.3/documentation/userguide/Figures/rna_elements.eps:4553: ue ==> use, due
data/infernal-1.1.3/documentation/userguide/Figures/rna_elements.eps:4594: nD ==> and, 2nd
data/infernal-1.1.3/documentation/userguide/Figures/rna_elements.eps:4602: Ba ==> By, be
data/infernal-1.1.3/documentation/userguide/Figures/rna_elements.eps:4630: ND ==> AND, 2ND
data/infernal-1.1.3/documentation/userguide/Figures/rna_elements.eps:4635: ba ==> by, be
data/infernal-1.1.3/documentation/userguide/Figures/rna_elements.eps:4644: aske ==> ask
data/infernal-1.1.3/documentation/userguide/Figures/rna_elements.eps:4655: Fo ==> Of, for
data/infernal-1.1.3/documentation/userguide/Figures/rna_elements.eps:4665: fO ==> of, for
data/infernal-1.1.3/documentation/userguide/Figures/rna_elements.eps:4680: Ue ==> Use, due
data/infernal-1.1.3/documentation/userguide/Figures/rna_elements.eps:4700: UE ==> USE, DUE
data/infernal-1.1.3/documentation/userguide/Figures/rna_elements.eps:4743: OT ==> TO, OF, OR
data/infernal-1.1.3/documentation/userguide/Figures/rna_elements.eps:4747: bA ==> by, be
data/infernal-1.1.3/documentation/userguide/Figures/rna_elements.eps:4803: bA ==> by, be
data/infernal-1.1.3/documentation/userguide/Figures/rna_elements.eps:4818: tE ==> the, be, we
data/infernal-1.1.3/documentation/userguide/Figures/rna_elements.eps:4819: Ba ==> By, be
data/infernal-1.1.3/documentation/userguide/Figures/rna_elements.eps:4846: Ue ==> Use, due
data/infernal-1.1.3/documentation/userguide/Figures/rna_elements.eps:4873: Fo ==> Of, for
data/infernal-1.1.3/documentation/userguide/Figures/rna_elements.eps:4902: nd ==> and, 2nd
data/infernal-1.1.3/documentation/userguide/Figures/rna_elements.eps:4910: ND ==> AND, 2ND
data/infernal-1.1.3/documentation/userguide/Figures/rna_elements.eps:5003: TE ==> THE, BE, WE
data/infernal-1.1.3/documentation/userguide/Figures/rna_elements.eps:5015: Te ==> The, be, we
data/infernal-1.1.3/documentation/userguide/Figures/rna_elements.eps:5023: fAVE ==> save
data/infernal-1.1.3/documentation/userguide/Figures/rna_elements.eps:5037: gir ==> git
data/infernal-1.1.3/documentation/userguide/Figures/rna_elements.eps:5052: Nd ==> And, 2nd
data/infernal-1.1.3/documentation/userguide/Figures/rna_elements.eps:5058: fO ==> of, for
data/infernal-1.1.3/documentation/userguide/Figures/rna_elements.eps:5073: seH ==> she
data/infernal-1.1.3/documentation/userguide/Figures/rna_elements.eps:5078: bVe ==> be
data/infernal-1.1.3/documentation/userguide/Figures/rna_elements.eps:5096: TE ==> THE, BE, WE
data/infernal-1.1.3/documentation/userguide/Figures/rna_elements.eps:5116: uE ==> use, due
data/infernal-1.1.3/documentation/userguide/Figures/rna_elements.eps:5128: ba ==> by, be
data/infernal-1.1.3/documentation/userguide/Figures/rna_elements.eps:5166: Nd ==> And, 2nd
data/infernal-1.1.3/documentation/userguide/Figures/rna_elements.eps:5213: Teh ==> The
data/infernal-1.1.3/documentation/userguide/Figures/rna_elements.eps:5239: Nd ==> And, 2nd
data/infernal-1.1.3/documentation/userguide/Figures/rna_elements.eps:5245: fO ==> of, for
data/infernal-1.1.3/documentation/userguide/Figures/rna_elements.eps:5256: URE ==> SURE, IRE, ARE, UREA, RUE
data/infernal-1.1.3/documentation/userguide/Figures/rna_elements.eps:5279: Nd ==> And, 2nd
data/infernal-1.1.3/documentation/userguide/Figures/rna_elements.eps:5311: AKS ==> ASK
data/infernal-1.1.3/documentation/userguide/Figures/rna_elements.eps:5331: TE ==> THE, BE, WE
data/infernal-1.1.3/documentation/userguide/Figures/rna_elements.eps:5390: OT ==> TO, OF, OR
data/infernal-1.1.3/documentation/userguide/Figures/rna_elements.eps:5391: NiN ==> inn, min, bin, nine
data/infernal-1.1.3/documentation/userguide/Figures/rna_elements.eps:5392: uE ==> use, due
data/infernal-1.1.3/documentation/userguide/Figures/rna_elements.eps:5395: nd ==> and, 2nd
data/infernal-1.1.3/documentation/userguide/Figures/rna_elements.eps:5422: ba ==> by, be
data/infernal-1.1.3/documentation/userguide/Figures/rna_elements.eps:5469: SAV ==> SAVE
data/infernal-1.1.3/documentation/userguide/Figures/rna_elements.eps:5474: Te ==> The, be, we
data/infernal-1.1.3/documentation/userguide/Figures/rna_elements.eps:5484: Fof ==> For
data/infernal-1.1.3/documentation/userguide/Figures/rna_elements.eps:5499: 3sT ==> 3rd
data/infernal-1.1.3/documentation/userguide/Figures/rna_elements.eps:5583: Hda ==> Had
data/infernal-1.1.3/documentation/userguide/Figures/rna_elements.eps:5599: FO ==> OF, FOR
data/infernal-1.1.3/documentation/userguide/Figures/rna_elements.eps:5610: fo ==> of, for
data/infernal-1.1.3/documentation/userguide/Figures/rna_elements.eps:5676: KNo ==> know
data/infernal-1.1.3/documentation/userguide/Figures/rna_elements.eps:5690: ba ==> by, be
data/infernal-1.1.3/documentation/userguide/Figures/rna_elements.eps:5694: fO ==> of, for
data/infernal-1.1.3/documentation/userguide/Figures/rna_elements.eps:5712: ND ==> AND, 2ND
data/infernal-1.1.3/documentation/userguide/Figures/rna_elements.eps:5726: OnS ==> owns
data/infernal-1.1.3/documentation/userguide/Figures/rna_elements.eps:5730: keT ==> kept
data/infernal-1.1.3/documentation/userguide/Figures/rna_elements.eps:5787: Te ==> The, be, we
data/infernal-1.1.3/documentation/userguide/Figures/rna_elements.eps:5847: Nd ==> And, 2nd
data/infernal-1.1.3/documentation/userguide/Figures/rna_elements.eps:5882: ANE ==> AND
data/infernal-1.1.3/documentation/userguide/Figures/rna_elements.eps:5946: Nd ==> And, 2nd
data/infernal-1.1.3/documentation/userguide/Figures/rna_elements.eps:5958: tE ==> the, be, we
data/infernal-1.1.3/documentation/userguide/Figures/rna_elements.eps:5971: ot ==> to, of, or
data/infernal-1.1.3/documentation/userguide/Figures/rna_elements.eps:6001: OLL ==> ALL, OLE, OLD, OLLY, OIL
data/infernal-1.1.3/documentation/userguide/Figures/rna_elements.eps:6100: uE ==> use, due
data/infernal-1.1.3/documentation/userguide/Figures/rna_elements.eps:6132: FO ==> OF, FOR
data/infernal-1.1.3/documentation/userguide/Figures/rna_elements.eps:6198: ALS ==> ALSO
data/infernal-1.1.3/documentation/userguide/Figures/rna_elements.eps:6237: BA ==> BY, BE
data/infernal-1.1.3/documentation/userguide/Figures/rna_elements.eps:6263: EdE ==> edge
data/infernal-1.1.3/documentation/userguide/Figures/rna_elements.eps:6263: uE ==> use, due
data/infernal-1.1.3/documentation/userguide/Figures/rna_elements.eps:6318: gIr ==> git
data/infernal-1.1.3/documentation/userguide/Figures/rna_elements.eps:6346: Te ==> The, be, we
data/infernal-1.1.3/documentation/userguide/Figures/rna_elements.eps:6349: NIN ==> INN, MIN, BIN, NINE
data/infernal-1.1.3/documentation/userguide/Figures/rna_elements.eps:6385: ba ==> by, be
data/infernal-1.1.3/documentation/userguide/Figures/rna_elements.eps:6503: uE ==> use, due
data/infernal-1.1.3/documentation/userguide/Figures/rna_elements.eps:6509: UE ==> USE, DUE
data/infernal-1.1.3/documentation/userguide/Figures/rna_elements.eps:6541: tE ==> the, be, we
data/infernal-1.1.3/rmark/rmark3-bg.hmm:9: specifc ==> specific
data/infernal-1.1.3/rmark/x-rfamscan:560: cant ==> can't
data/infernal-1.1.3/rmark/rmark-create.c:575: nin ==> inn, min, bin, nine
data/infernal-1.1.3/rmark/rmark-create.c:590: nin ==> inn, min, bin, nine
data/infernal-1.1.3/rmark/rmark-create.c:591: nin ==> inn, min, bin, nine
data/infernal-1.1.3/rmark/rmark-create.c:601: nin ==> inn, min, bin, nine
data/infernal-1.1.3/rmark/rmark-create.c:616: nin ==> inn, min, bin, nine
data/infernal-1.1.3/rmark/rmark-create.c:616: nin ==> inn, min, bin, nine
data/infernal-1.1.3/rmark/rmark-create.c:619: nin ==> inn, min, bin, nine
data/infernal-1.1.3/rmark/rmark-create.c:621: nin ==> inn, min, bin, nine
data/infernal-1.1.3/rmark/rmark-create.c:638: nin ==> inn, min, bin, nine
data/infernal-1.1.3/rmark/rmark-create.c:652: nin ==> inn, min, bin, nine
data/infernal-1.1.3/rmark/rmark-create.c:652: nin ==> inn, min, bin, nine
data/infernal-1.1.3/rmark/rmark-create.c:848: nin ==> inn, min, bin, nine
data/infernal-1.1.3/rmark/rmark-create.c:941: nin ==> inn, min, bin, nine
data/infernal-1.1.3/rmark/rmark-create.c:941: nin ==> inn, min, bin, nine
data/infernal-1.1.3/rmark/rmark-create.c:941: nin ==> inn, min, bin, nine
data/infernal-1.1.3/rmark/rmark-create.c:943: nin ==> inn, min, bin, nine
data/infernal-1.1.3/rmark/rmark-create.c:945: nin ==> inn, min, bin, nine
data/infernal-1.1.3/rmark/rmark-rocplot.c:404: querys ==> queries
data/infernal-1.1.3/rmark/00README:545: fo ==> of, for
data/infernal-1.1.3/src/cmsearch.c:798: SER ==> SET
data/infernal-1.1.3/src/cmsearch.c:842: SER ==> SET
data/infernal-1.1.3/src/cmsearch.c:2284: initalize ==> initialize
data/infernal-1.1.3/src/cmsearch.c:2529: succes ==> success
data/infernal-1.1.3/src/cm_trunc.c:54: nd ==> and, 2nd
data/infernal-1.1.3/src/cm_trunc.c:133: menas ==> means
data/infernal-1.1.3/src/cm_trunc.c:293: nd ==> and, 2nd
data/infernal-1.1.3/src/cm_trunc.c:293: nd ==> and, 2nd
data/infernal-1.1.3/src/cm_trunc.c:293: nd ==> and, 2nd
data/infernal-1.1.3/src/cm_trunc.c:294: nd ==> and, 2nd
data/infernal-1.1.3/src/cm_trunc.c:294: nd ==> and, 2nd
data/infernal-1.1.3/src/cm_trunc.c:294: nd ==> and, 2nd
data/infernal-1.1.3/src/cm_trunc.c:294: nd ==> and, 2nd
data/infernal-1.1.3/src/cm_trunc.c:295: nd ==> and, 2nd
data/infernal-1.1.3/src/cm_trunc.c:295: nd ==> and, 2nd
data/infernal-1.1.3/src/cm_trunc.c:295: nd ==> and, 2nd
data/infernal-1.1.3/src/cm_trunc.c:295: nd ==> and, 2nd
data/infernal-1.1.3/src/cm_trunc.c:298: nd ==> and, 2nd
data/infernal-1.1.3/src/cm_trunc.c:301: nd ==> and, 2nd
data/infernal-1.1.3/src/cm_trunc.c:301: nd ==> and, 2nd
data/infernal-1.1.3/src/cm_trunc.c:302: nd ==> and, 2nd
data/infernal-1.1.3/src/cm_trunc.c:302: nd ==> and, 2nd
data/infernal-1.1.3/src/cm_trunc.c:303: nd ==> and, 2nd
data/infernal-1.1.3/src/cm_trunc.c:303: nd ==> and, 2nd
data/infernal-1.1.3/src/cm_trunc.c:304: nd ==> and, 2nd
data/infernal-1.1.3/src/cm_trunc.c:306: nd ==> and, 2nd
data/infernal-1.1.3/src/cm_trunc.c:306: nd ==> and, 2nd
data/infernal-1.1.3/src/cm_trunc.c:306: nd ==> and, 2nd
data/infernal-1.1.3/src/cm_trunc.c:306: nd ==> and, 2nd
data/infernal-1.1.3/src/cm_trunc.c:308: nd ==> and, 2nd
data/infernal-1.1.3/src/cm_trunc.c:312: nd ==> and, 2nd
data/infernal-1.1.3/src/cm_trunc.c:375: nd ==> and, 2nd
data/infernal-1.1.3/src/cm_trunc.c:376: nd ==> and, 2nd
data/infernal-1.1.3/src/cm_trunc.c:534: nd ==> and, 2nd
data/infernal-1.1.3/src/cm_trunc.c:541: nd ==> and, 2nd
data/infernal-1.1.3/src/cm_trunc.c:544: nd ==> and, 2nd
data/infernal-1.1.3/src/cm_trunc.c:545: nd ==> and, 2nd
data/infernal-1.1.3/src/cm_trunc.c:546: nd ==> and, 2nd
data/infernal-1.1.3/src/cm_trunc.c:547: nd ==> and, 2nd
data/infernal-1.1.3/src/cm_trunc.c:547: nd ==> and, 2nd
data/infernal-1.1.3/src/cm_trunc.c:548: nd ==> and, 2nd
data/infernal-1.1.3/src/cm_trunc.c:548: nd ==> and, 2nd
data/infernal-1.1.3/src/cm_trunc.c:549: nd ==> and, 2nd
data/infernal-1.1.3/src/cm_trunc.c:549: nd ==> and, 2nd
data/infernal-1.1.3/src/cm_trunc.c:549: nd ==> and, 2nd
data/infernal-1.1.3/src/cm_trunc.c:549: nd ==> and, 2nd
data/infernal-1.1.3/src/cm_trunc.c:555: nd ==> and, 2nd
data/infernal-1.1.3/src/cm_trunc.c:557: nd ==> and, 2nd
data/infernal-1.1.3/src/cm_trunc.c:557: nd ==> and, 2nd
data/infernal-1.1.3/src/cm_trunc.c:573: nd ==> and, 2nd
data/infernal-1.1.3/src/cm_trunc.c:575: nd ==> and, 2nd
data/infernal-1.1.3/src/cm_trunc.c:576: nd ==> and, 2nd
data/infernal-1.1.3/src/cm_trunc.c:577: nd ==> and, 2nd
data/infernal-1.1.3/src/cm_trunc.c:578: nd ==> and, 2nd
data/infernal-1.1.3/src/cm_trunc.c:578: nd ==> and, 2nd
data/infernal-1.1.3/src/cm_trunc.c:579: nd ==> and, 2nd
data/infernal-1.1.3/src/cm_trunc.c:579: nd ==> and, 2nd
data/infernal-1.1.3/src/cm_trunc.c:580: nd ==> and, 2nd
data/infernal-1.1.3/src/cm_trunc.c:580: nd ==> and, 2nd
data/infernal-1.1.3/src/cm_trunc.c:580: nd ==> and, 2nd
data/infernal-1.1.3/src/cm_trunc.c:580: nd ==> and, 2nd
data/infernal-1.1.3/src/cm_trunc.c:587: nd ==> and, 2nd
data/infernal-1.1.3/src/cm_trunc.c:605: nd ==> and, 2nd
data/infernal-1.1.3/src/cm_trunc.c:607: nd ==> and, 2nd
data/infernal-1.1.3/src/cm_trunc.c:608: nd ==> and, 2nd
data/infernal-1.1.3/src/cm_trunc.c:609: nd ==> and, 2nd
data/infernal-1.1.3/src/cm_trunc.c:610: nd ==> and, 2nd
data/infernal-1.1.3/src/cm_trunc.c:610: nd ==> and, 2nd
data/infernal-1.1.3/src/cm_trunc.c:611: nd ==> and, 2nd
data/infernal-1.1.3/src/cm_trunc.c:611: nd ==> and, 2nd
data/infernal-1.1.3/src/cm_trunc.c:612: nd ==> and, 2nd
data/infernal-1.1.3/src/cm_trunc.c:612: nd ==> and, 2nd
data/infernal-1.1.3/src/cm_trunc.c:612: nd ==> and, 2nd
data/infernal-1.1.3/src/cm_trunc.c:612: nd ==> and, 2nd
data/infernal-1.1.3/src/cm_trunc.c:619: nd ==> and, 2nd
data/infernal-1.1.3/src/cm_trunc.c:667: nd ==> and, 2nd
data/infernal-1.1.3/src/cm_trunc.c:680: nd ==> and, 2nd
data/infernal-1.1.3/src/cm_trunc.c:681: nd ==> and, 2nd
data/infernal-1.1.3/src/cm_trunc.c:681: nd ==> and, 2nd
data/infernal-1.1.3/src/cm_trunc.c:682: nd ==> and, 2nd
data/infernal-1.1.3/src/cm_trunc.c:682: nd ==> and, 2nd
data/infernal-1.1.3/src/cm_trunc.c:683: nd ==> and, 2nd
data/infernal-1.1.3/src/cm_trunc.c:683: nd ==> and, 2nd
data/infernal-1.1.3/src/cm_trunc.c:711: nd ==> and, 2nd
data/infernal-1.1.3/src/cm_trunc.c:712: nd ==> and, 2nd
data/infernal-1.1.3/src/cm_trunc.c:712: nd ==> and, 2nd
data/infernal-1.1.3/src/cm_trunc.c:713: nd ==> and, 2nd
data/infernal-1.1.3/src/cm_trunc.c:713: nd ==> and, 2nd
data/infernal-1.1.3/src/cm_trunc.c:714: nd ==> and, 2nd
data/infernal-1.1.3/src/cm_trunc.c:714: nd ==> and, 2nd
data/infernal-1.1.3/src/cp9_dp.c:457: selfs ==> self
data/infernal-1.1.3/src/cp9_dp.c:1150: selfs ==> self
data/infernal-1.1.3/src/cp9_modelmaker.c:41: nd ==> and, 2nd
data/infernal-1.1.3/src/cp9_modelmaker.c:2039: nd ==> and, 2nd
data/infernal-1.1.3/src/cp9_modelmaker.c:2181: nd ==> and, 2nd
data/infernal-1.1.3/src/cp9_modelmaker.c:2181: nd ==> and, 2nd
data/infernal-1.1.3/src/cp9_modelmaker.c:2181: nd ==> and, 2nd
data/infernal-1.1.3/src/cp9_modelmaker.c:2182: nd ==> and, 2nd
data/infernal-1.1.3/src/cp9_modelmaker.c:2182: nd ==> and, 2nd
data/infernal-1.1.3/src/cp9_modelmaker.c:2183: nd ==> and, 2nd
data/infernal-1.1.3/src/cp9_modelmaker.c:2186: nd ==> and, 2nd
data/infernal-1.1.3/src/cp9_modelmaker.c:2188: nd ==> and, 2nd
data/infernal-1.1.3/src/cp9_modelmaker.c:2190: nd ==> and, 2nd
data/infernal-1.1.3/src/cp9_modelmaker.c:2190: nd ==> and, 2nd
data/infernal-1.1.3/src/cp9_modelmaker.c:2192: nd ==> and, 2nd
data/infernal-1.1.3/src/cp9_modelmaker.c:2194: nd ==> and, 2nd
data/infernal-1.1.3/src/cp9_modelmaker.c:2195: nd ==> and, 2nd
data/infernal-1.1.3/src/cp9_modelmaker.c:2195: nd ==> and, 2nd
data/infernal-1.1.3/src/cp9_modelmaker.c:2198: nd ==> and, 2nd
data/infernal-1.1.3/src/cp9_modelmaker.c:2201: nd ==> and, 2nd
data/infernal-1.1.3/src/cp9_modelmaker.c:2203: nd ==> and, 2nd
data/infernal-1.1.3/src/cp9_modelmaker.c:2204: nd ==> and, 2nd
data/infernal-1.1.3/src/cp9_modelmaker.c:2204: nd ==> and, 2nd
data/infernal-1.1.3/src/cp9_modelmaker.c:2239: nd ==> and, 2nd
data/infernal-1.1.3/src/cp9_modelmaker.c:2252: nd ==> and, 2nd
data/infernal-1.1.3/src/cp9_modelmaker.c:2257: nd ==> and, 2nd
data/infernal-1.1.3/src/cp9_modelmaker.c:2270: nd ==> and, 2nd
data/infernal-1.1.3/src/cp9_modelmaker.c:2270: nd ==> and, 2nd
data/infernal-1.1.3/src/cp9_modelmaker.c:2307: nd ==> and, 2nd
data/infernal-1.1.3/src/cp9_modelmaker.c:2309: nd ==> and, 2nd
data/infernal-1.1.3/src/cp9_modelmaker.c:2310: nd ==> and, 2nd
data/infernal-1.1.3/src/cp9_modelmaker.c:2312: nd ==> and, 2nd
data/infernal-1.1.3/src/cp9_modelmaker.c:2313: nd ==> and, 2nd
data/infernal-1.1.3/src/cp9_modelmaker.c:2314: nd ==> and, 2nd
data/infernal-1.1.3/src/cp9_modelmaker.c:2316: nd ==> and, 2nd
data/infernal-1.1.3/src/cp9_modelmaker.c:2317: nd ==> and, 2nd
data/infernal-1.1.3/src/cp9_modelmaker.c:2318: nd ==> and, 2nd
data/infernal-1.1.3/src/cp9_modelmaker.c:2320: nd ==> and, 2nd
data/infernal-1.1.3/src/cp9_modelmaker.c:2322: nd ==> and, 2nd
data/infernal-1.1.3/src/cp9_modelmaker.c:2323: nd ==> and, 2nd
data/infernal-1.1.3/src/cp9_modelmaker.c:2324: nd ==> and, 2nd
data/infernal-1.1.3/src/cp9_modelmaker.c:2327: nd ==> and, 2nd
data/infernal-1.1.3/src/cp9_modelmaker.c:2329: nd ==> and, 2nd
data/infernal-1.1.3/src/cp9_modelmaker.c:2333: nd ==> and, 2nd
data/infernal-1.1.3/src/cp9_modelmaker.c:2341: nd ==> and, 2nd
data/infernal-1.1.3/src/cp9_modelmaker.c:2342: nd ==> and, 2nd
data/infernal-1.1.3/src/cp9_modelmaker.c:2342: nd ==> and, 2nd
data/infernal-1.1.3/src/cp9_modelmaker.c:2343: nd ==> and, 2nd
data/infernal-1.1.3/src/cp9_modelmaker.c:2343: nd ==> and, 2nd
data/infernal-1.1.3/src/cp9_modelmaker.c:2345: nd ==> and, 2nd
data/infernal-1.1.3/src/cp9_modelmaker.c:2350: nd ==> and, 2nd
data/infernal-1.1.3/src/cp9_modelmaker.c:2350: nd ==> and, 2nd
data/infernal-1.1.3/src/cp9_modelmaker.c:2351: nd ==> and, 2nd
data/infernal-1.1.3/src/cp9_modelmaker.c:2351: nd ==> and, 2nd
data/infernal-1.1.3/src/cp9_modelmaker.c:2353: nd ==> and, 2nd
data/infernal-1.1.3/src/cp9_modelmaker.c:2362: nd ==> and, 2nd
data/infernal-1.1.3/src/cp9_modelmaker.c:2362: nd ==> and, 2nd
data/infernal-1.1.3/src/cp9_modelmaker.c:2363: nd ==> and, 2nd
data/infernal-1.1.3/src/cp9_modelmaker.c:2371: nd ==> and, 2nd
data/infernal-1.1.3/src/cp9_modelmaker.c:2382: nd ==> and, 2nd
data/infernal-1.1.3/src/cp9_modelmaker.c:2387: nd ==> and, 2nd
data/infernal-1.1.3/src/cp9_modelmaker.c:2387: nd ==> and, 2nd
data/infernal-1.1.3/src/cp9_modelmaker.c:2388: nd ==> and, 2nd
data/infernal-1.1.3/src/cp9_modelmaker.c:2388: nd ==> and, 2nd
data/infernal-1.1.3/src/cp9_modelmaker.c:2390: nd ==> and, 2nd
data/infernal-1.1.3/src/cp9_modelmaker.c:2395: nd ==> and, 2nd
data/infernal-1.1.3/src/cp9_modelmaker.c:2395: nd ==> and, 2nd
data/infernal-1.1.3/src/cp9_modelmaker.c:2396: nd ==> and, 2nd
data/infernal-1.1.3/src/cp9_modelmaker.c:2396: nd ==> and, 2nd
data/infernal-1.1.3/src/cp9_modelmaker.c:2398: nd ==> and, 2nd
data/infernal-1.1.3/src/cp9_modelmaker.c:2403: nd ==> and, 2nd
data/infernal-1.1.3/src/cp9_modelmaker.c:2404: nd ==> and, 2nd
data/infernal-1.1.3/src/cp9_modelmaker.c:2404: nd ==> and, 2nd
data/infernal-1.1.3/src/cp9_modelmaker.c:2405: nd ==> and, 2nd
data/infernal-1.1.3/src/cp9_modelmaker.c:2405: nd ==> and, 2nd
data/infernal-1.1.3/src/cp9_modelmaker.c:2407: nd ==> and, 2nd
data/infernal-1.1.3/src/cp9_modelmaker.c:2524: dealign ==> dealing
data/infernal-1.1.3/src/cp9_modelmaker.c:2763: nd ==> and, 2nd
data/infernal-1.1.3/src/cp9_modelmaker.c:2789: nd ==> and, 2nd
data/infernal-1.1.3/src/cp9_modelmaker.c:2789: nd ==> and, 2nd
data/infernal-1.1.3/src/cp9_modelmaker.c:2789: nd ==> and, 2nd
data/infernal-1.1.3/src/cp9_modelmaker.c:2791: nd ==> and, 2nd
data/infernal-1.1.3/src/cp9_modelmaker.c:2791: nd ==> and, 2nd
data/infernal-1.1.3/src/cp9_modelmaker.c:2792: nd ==> and, 2nd
data/infernal-1.1.3/src/cp9_modelmaker.c:2792: nd ==> and, 2nd
data/infernal-1.1.3/src/cp9_modelmaker.c:2793: nd ==> and, 2nd
data/infernal-1.1.3/src/cp9_modelmaker.c:2794: nd ==> and, 2nd
data/infernal-1.1.3/src/cp9_modelmaker.c:2796: nd ==> and, 2nd
data/infernal-1.1.3/src/cp9_modelmaker.c:2796: nd ==> and, 2nd
data/infernal-1.1.3/src/cp9_modelmaker.c:2797: nd ==> and, 2nd
data/infernal-1.1.3/src/cp9_modelmaker.c:2798: nd ==> and, 2nd
data/infernal-1.1.3/src/cp9_modelmaker.c:2819: nd ==> and, 2nd
data/infernal-1.1.3/src/cp9_modelmaker.c:2819: nd ==> and, 2nd
data/infernal-1.1.3/src/cp9_modelmaker.c:2819: nd ==> and, 2nd
data/infernal-1.1.3/src/cp9_modelmaker.c:2821: nd ==> and, 2nd
data/infernal-1.1.3/src/cp9_modelmaker.c:2821: nd ==> and, 2nd
data/infernal-1.1.3/src/cp9_modelmaker.c:2822: nd ==> and, 2nd
data/infernal-1.1.3/src/cp9_modelmaker.c:2822: nd ==> and, 2nd
data/infernal-1.1.3/src/cp9_modelmaker.c:2823: nd ==> and, 2nd
data/infernal-1.1.3/src/cp9_modelmaker.c:2824: nd ==> and, 2nd
data/infernal-1.1.3/src/cp9_modelmaker.c:2826: nd ==> and, 2nd
data/infernal-1.1.3/src/cp9_modelmaker.c:2827: nd ==> and, 2nd
data/infernal-1.1.3/src/cp9_modelmaker.c:2828: nd ==> and, 2nd
data/infernal-1.1.3/src/cp9_trace.c:920: succes ==> success
data/infernal-1.1.3/src/cp9_trace.c:951: froms ==> forms
data/infernal-1.1.3/src/cp9_trace.c:953: nd ==> and, 2nd
data/infernal-1.1.3/src/cp9_trace.c:983: overides ==> overrides
data/infernal-1.1.3/src/cp9_trace.c:989: nd ==> and, 2nd
data/infernal-1.1.3/src/cp9_trace.c:989: nd ==> and, 2nd
data/infernal-1.1.3/src/cp9_trace.c:989: nd ==> and, 2nd
data/infernal-1.1.3/src/cp9_trace.c:991: nd ==> and, 2nd
data/infernal-1.1.3/src/cp9_trace.c:991: nd ==> and, 2nd
data/infernal-1.1.3/src/cp9_trace.c:991: nd ==> and, 2nd
data/infernal-1.1.3/src/cp9_trace.c:991: nd ==> and, 2nd
data/infernal-1.1.3/src/cp9_trace.c:992: nd ==> and, 2nd
data/infernal-1.1.3/src/cp9_trace.c:993: nd ==> and, 2nd
data/infernal-1.1.3/src/cp9_trace.c:994: nd ==> and, 2nd
data/infernal-1.1.3/src/cp9_trace.c:994: nd ==> and, 2nd
data/infernal-1.1.3/src/cp9_trace.c:995: nd ==> and, 2nd
data/infernal-1.1.3/src/display.c:62: nd ==> and, 2nd
data/infernal-1.1.3/src/display.c:109: nd ==> and, 2nd
data/infernal-1.1.3/src/display.c:110: nd ==> and, 2nd
data/infernal-1.1.3/src/display.c:110: nd ==> and, 2nd
data/infernal-1.1.3/src/display.c:117: nd ==> and, 2nd
data/infernal-1.1.3/src/display.c:120: nd ==> and, 2nd
data/infernal-1.1.3/src/display.c:120: nd ==> and, 2nd
data/infernal-1.1.3/src/display.c:122: nd ==> and, 2nd
data/infernal-1.1.3/src/display.c:127: nd ==> and, 2nd
data/infernal-1.1.3/src/display.c:128: nd ==> and, 2nd
data/infernal-1.1.3/src/display.c:128: nd ==> and, 2nd
data/infernal-1.1.3/src/display.c:211: nd ==> and, 2nd
data/infernal-1.1.3/src/display.c:212: nd ==> and, 2nd
data/infernal-1.1.3/src/display.c:212: nd ==> and, 2nd
data/infernal-1.1.3/src/display.c:226: nd ==> and, 2nd
data/infernal-1.1.3/src/display.c:227: nd ==> and, 2nd
data/infernal-1.1.3/src/display.c:228: nd ==> and, 2nd
data/infernal-1.1.3/src/display.c:262: nd ==> and, 2nd
data/infernal-1.1.3/src/display.c:262: nd ==> and, 2nd
data/infernal-1.1.3/src/display.c:281: nd ==> and, 2nd
data/infernal-1.1.3/src/display.c:281: nd ==> and, 2nd
data/infernal-1.1.3/src/display.c:398: nd ==> and, 2nd
data/infernal-1.1.3/src/display.c:399: nd ==> and, 2nd
data/infernal-1.1.3/src/display.c:399: nd ==> and, 2nd
data/infernal-1.1.3/src/display.c:667: nd ==> and, 2nd
data/infernal-1.1.3/src/display.c:697: nd ==> and, 2nd
data/infernal-1.1.3/src/display.c:697: nd ==> and, 2nd
data/infernal-1.1.3/src/display.c:697: nd ==> and, 2nd
data/infernal-1.1.3/src/display.c:698: nd ==> and, 2nd
data/infernal-1.1.3/src/display.c:698: nd ==> and, 2nd
data/infernal-1.1.3/src/display.c:712: nd ==> and, 2nd
data/infernal-1.1.3/src/display.c:713: nd ==> and, 2nd
data/infernal-1.1.3/src/display.c:722: nd ==> and, 2nd
data/infernal-1.1.3/src/display.c:723: nd ==> and, 2nd
data/infernal-1.1.3/src/display.c:728: nd ==> and, 2nd
data/infernal-1.1.3/src/display.c:743: nd ==> and, 2nd
data/infernal-1.1.3/src/display.c:753: nd ==> and, 2nd
data/infernal-1.1.3/src/display.c:754: nd ==> and, 2nd
data/infernal-1.1.3/src/display.c:754: nd ==> and, 2nd
data/infernal-1.1.3/src/display.c:755: nd ==> and, 2nd
data/infernal-1.1.3/src/display.c:755: nd ==> and, 2nd
data/infernal-1.1.3/src/display.c:762: nd ==> and, 2nd
data/infernal-1.1.3/src/display.c:763: nd ==> and, 2nd
data/infernal-1.1.3/src/display.c:763: nd ==> and, 2nd
data/infernal-1.1.3/src/display.c:764: nd ==> and, 2nd
data/infernal-1.1.3/src/display.c:764: nd ==> and, 2nd
data/infernal-1.1.3/src/display.c:772: nd ==> and, 2nd
data/infernal-1.1.3/src/display.c:780: nd ==> and, 2nd
data/infernal-1.1.3/src/display.c:787: nd ==> and, 2nd
data/infernal-1.1.3/src/display.c:884: nd ==> and, 2nd
data/infernal-1.1.3/src/display.c:890: nd ==> and, 2nd
data/infernal-1.1.3/src/display.c:890: nd ==> and, 2nd
data/infernal-1.1.3/src/display.c:892: nd ==> and, 2nd
data/infernal-1.1.3/src/display.c:894: nd ==> and, 2nd
data/infernal-1.1.3/src/display.c:895: nd ==> and, 2nd
data/infernal-1.1.3/src/display.c:896: nd ==> and, 2nd
data/infernal-1.1.3/src/display.c:897: nd ==> and, 2nd
data/infernal-1.1.3/src/display.c:897: nd ==> and, 2nd
data/infernal-1.1.3/src/display.c:900: nd ==> and, 2nd
data/infernal-1.1.3/src/display.c:905: nd ==> and, 2nd
data/infernal-1.1.3/src/display.c:909: nd ==> and, 2nd
data/infernal-1.1.3/src/display.c:909: nd ==> and, 2nd
data/infernal-1.1.3/src/display.c:957: nd ==> and, 2nd
data/infernal-1.1.3/src/display.c:969: nd ==> and, 2nd
data/infernal-1.1.3/src/display.c:969: nd ==> and, 2nd
data/infernal-1.1.3/src/display.c:971: nd ==> and, 2nd
data/infernal-1.1.3/src/display.c:972: nd ==> and, 2nd
data/infernal-1.1.3/src/display.c:972: nd ==> and, 2nd
data/infernal-1.1.3/src/display.c:973: nd ==> and, 2nd
data/infernal-1.1.3/src/display.c:976: nd ==> and, 2nd
data/infernal-1.1.3/src/display.c:978: nd ==> and, 2nd
data/infernal-1.1.3/src/display.c:978: nd ==> and, 2nd
data/infernal-1.1.3/src/display.c:979: nd ==> and, 2nd
data/infernal-1.1.3/src/display.c:979: nd ==> and, 2nd
data/infernal-1.1.3/src/display.c:988: nd ==> and, 2nd
data/infernal-1.1.3/src/display.c:988: nd ==> and, 2nd
data/infernal-1.1.3/src/display.c:988: nd ==> and, 2nd
data/infernal-1.1.3/src/display.c:990: nd ==> and, 2nd
data/infernal-1.1.3/src/display.c:991: nd ==> and, 2nd
data/infernal-1.1.3/src/display.c:991: nd ==> and, 2nd
data/infernal-1.1.3/src/display.c:992: nd ==> and, 2nd
data/infernal-1.1.3/src/display.c:997: nd ==> and, 2nd
data/infernal-1.1.3/src/display.c:999: nd ==> and, 2nd
data/infernal-1.1.3/src/display.c:1003: nd ==> and, 2nd
data/infernal-1.1.3/src/display.c:1008: nd ==> and, 2nd
data/infernal-1.1.3/src/display.c:1009: nd ==> and, 2nd
data/infernal-1.1.3/src/display.c:1074: nd ==> and, 2nd
data/infernal-1.1.3/src/display.c:1074: nd ==> and, 2nd
data/infernal-1.1.3/src/display.c:1075: nd ==> and, 2nd
data/infernal-1.1.3/src/display.c:1075: nd ==> and, 2nd
data/infernal-1.1.3/src/display.c:1078: nd ==> and, 2nd
data/infernal-1.1.3/src/display.c:1078: nd ==> and, 2nd
data/infernal-1.1.3/src/display.c:1079: nd ==> and, 2nd
data/infernal-1.1.3/src/display.c:1079: nd ==> and, 2nd
data/infernal-1.1.3/src/display.c:1082: nd ==> and, 2nd
data/infernal-1.1.3/src/display.c:1115: nd ==> and, 2nd
data/infernal-1.1.3/src/display.c:1123: nd ==> and, 2nd
data/infernal-1.1.3/src/display.c:1123: nd ==> and, 2nd
data/infernal-1.1.3/src/display.c:1123: nd ==> and, 2nd
data/infernal-1.1.3/src/display.c:1124: nd ==> and, 2nd
data/infernal-1.1.3/src/display.c:1124: nd ==> and, 2nd
data/infernal-1.1.3/src/display.c:1124: nd ==> and, 2nd
data/infernal-1.1.3/src/display.c:1127: nd ==> and, 2nd
data/infernal-1.1.3/src/display.c:1130: nd ==> and, 2nd
data/infernal-1.1.3/src/display.c:1131: nd ==> and, 2nd
data/infernal-1.1.3/src/display.c:1137: nd ==> and, 2nd
data/infernal-1.1.3/src/display.c:1138: nd ==> and, 2nd
data/infernal-1.1.3/src/display.c:1138: nd ==> and, 2nd
data/infernal-1.1.3/src/display.c:1142: nd ==> and, 2nd
data/infernal-1.1.3/src/display.c:1142: nd ==> and, 2nd
data/infernal-1.1.3/src/display.c:1143: nd ==> and, 2nd
data/infernal-1.1.3/src/display.c:1145: nd ==> and, 2nd
data/infernal-1.1.3/src/display.c:1149: nd ==> and, 2nd
data/infernal-1.1.3/src/display.c:1152: nd ==> and, 2nd
data/infernal-1.1.3/src/display.c:1155: nd ==> and, 2nd
data/infernal-1.1.3/src/display.c:1161: nd ==> and, 2nd
data/infernal-1.1.3/src/display.c:1163: nd ==> and, 2nd
data/infernal-1.1.3/src/display.c:1165: nd ==> and, 2nd
data/infernal-1.1.3/src/display.c:1175: nd ==> and, 2nd
data/infernal-1.1.3/src/display.c:1175: nd ==> and, 2nd
data/infernal-1.1.3/src/display.c:1176: nd ==> and, 2nd
data/infernal-1.1.3/src/display.c:1177: nd ==> and, 2nd
data/infernal-1.1.3/src/display.c:1178: nd ==> and, 2nd
data/infernal-1.1.3/src/display.c:1179: nd ==> and, 2nd
data/infernal-1.1.3/src/display.c:1181: nd ==> and, 2nd
data/infernal-1.1.3/src/display.c:1188: nd ==> and, 2nd
data/infernal-1.1.3/src/display.c:1188: nd ==> and, 2nd
data/infernal-1.1.3/src/display.c:1188: nd ==> and, 2nd
data/infernal-1.1.3/src/display.c:1189: nd ==> and, 2nd
data/infernal-1.1.3/src/display.c:1190: nd ==> and, 2nd
data/infernal-1.1.3/src/display.c:1191: nd ==> and, 2nd
data/infernal-1.1.3/src/display.c:1227: nd ==> and, 2nd
data/infernal-1.1.3/src/display.c:1235: nd ==> and, 2nd
data/infernal-1.1.3/src/display.c:1235: nd ==> and, 2nd
data/infernal-1.1.3/src/display.c:1235: nd ==> and, 2nd
data/infernal-1.1.3/src/display.c:1237: nd ==> and, 2nd
data/infernal-1.1.3/src/display.c:1237: nd ==> and, 2nd
data/infernal-1.1.3/src/display.c:1237: nd ==> and, 2nd
data/infernal-1.1.3/src/display.c:1238: nd ==> and, 2nd
data/infernal-1.1.3/src/display.c:1238: nd ==> and, 2nd
data/infernal-1.1.3/src/display.c:1238: nd ==> and, 2nd
data/infernal-1.1.3/src/hmmband.c:1532: nd ==> and, 2nd
data/infernal-1.1.3/src/hmmband.c:1604: nd ==> and, 2nd
data/infernal-1.1.3/src/hmmband.c:1623: nd ==> and, 2nd
data/infernal-1.1.3/src/hmmband.c:1630: nd ==> and, 2nd
data/infernal-1.1.3/src/hmmband.c:1631: nd ==> and, 2nd
data/infernal-1.1.3/src/hmmband.c:1635: nd ==> and, 2nd
data/infernal-1.1.3/src/hmmband.c:1640: nd ==> and, 2nd
data/infernal-1.1.3/src/hmmband.c:1665: nd ==> and, 2nd
data/infernal-1.1.3/src/hmmband.c:1666: nd ==> and, 2nd
data/infernal-1.1.3/src/hmmband.c:1668: nd ==> and, 2nd
data/infernal-1.1.3/src/hmmband.c:1699: nd ==> and, 2nd
data/infernal-1.1.3/src/hmmband.c:1701: nd ==> and, 2nd
data/infernal-1.1.3/src/hmmband.c:1715: nd ==> and, 2nd
data/infernal-1.1.3/src/hmmband.c:1716: nd ==> and, 2nd
data/infernal-1.1.3/src/hmmband.c:1737: nd ==> and, 2nd
data/infernal-1.1.3/src/hmmband.c:1761: nd ==> and, 2nd
data/infernal-1.1.3/src/hmmband.c:1783: nd ==> and, 2nd
data/infernal-1.1.3/src/hmmband.c:1801: nd ==> and, 2nd
data/infernal-1.1.3/src/hmmband.c:1830: nd ==> and, 2nd
data/infernal-1.1.3/src/hmmband.c:1835: nd ==> and, 2nd
data/infernal-1.1.3/src/hmmband.c:1837: nd ==> and, 2nd
data/infernal-1.1.3/src/hmmband.c:1838: nd ==> and, 2nd
data/infernal-1.1.3/src/hmmband.c:1857: nd ==> and, 2nd
data/infernal-1.1.3/src/hmmband.c:1858: nd ==> and, 2nd
data/infernal-1.1.3/src/hmmband.c:1868: nd ==> and, 2nd
data/infernal-1.1.3/src/hmmband.c:1870: nd ==> and, 2nd
data/infernal-1.1.3/src/hmmband.c:1873: nd ==> and, 2nd
data/infernal-1.1.3/src/hmmband.c:1876: nd ==> and, 2nd
data/infernal-1.1.3/src/hmmband.c:1879: nd ==> and, 2nd
data/infernal-1.1.3/src/hmmband.c:1884: nd ==> and, 2nd
data/infernal-1.1.3/src/hmmband.c:1886: nd ==> and, 2nd
data/infernal-1.1.3/src/hmmband.c:1888: nd ==> and, 2nd
data/infernal-1.1.3/src/hmmband.c:1945: konw ==> know
data/infernal-1.1.3/src/hmmband.c:1966: nd ==> and, 2nd
data/infernal-1.1.3/src/hmmband.c:1997: nd ==> and, 2nd
data/infernal-1.1.3/src/hmmband.c:2010: nd ==> and, 2nd
data/infernal-1.1.3/src/hmmband.c:2031: nd ==> and, 2nd
data/infernal-1.1.3/src/hmmband.c:2033: nd ==> and, 2nd
data/infernal-1.1.3/src/hmmband.c:2033: nd ==> and, 2nd
data/infernal-1.1.3/src/hmmband.c:2033: nd ==> and, 2nd
data/infernal-1.1.3/src/hmmband.c:2034: nd ==> and, 2nd
data/infernal-1.1.3/src/hmmband.c:2036: nd ==> and, 2nd
data/infernal-1.1.3/src/hmmband.c:2037: nd ==> and, 2nd
data/infernal-1.1.3/src/hmmband.c:2100: nd ==> and, 2nd
data/infernal-1.1.3/src/hmmband.c:2102: nd ==> and, 2nd
data/infernal-1.1.3/src/hmmband.c:2103: nd ==> and, 2nd
data/infernal-1.1.3/src/hmmband.c:2103: nd ==> and, 2nd
data/infernal-1.1.3/src/hmmband.c:2103: nd ==> and, 2nd
data/infernal-1.1.3/src/hmmband.c:2104: nd ==> and, 2nd
data/infernal-1.1.3/src/hmmband.c:2104: nd ==> and, 2nd
data/infernal-1.1.3/src/hmmband.c:2104: nd ==> and, 2nd
data/infernal-1.1.3/src/hmmband.c:2105: nd ==> and, 2nd
data/infernal-1.1.3/src/hmmband.c:3010: nd ==> and, 2nd
data/infernal-1.1.3/src/hmmband.c:3010: nd ==> and, 2nd
data/infernal-1.1.3/src/hmmband.c:3014: accouting ==> accounting
data/infernal-1.1.3/src/hmmband.c:3015: accouting ==> accounting
data/infernal-1.1.3/src/hmmband.c:3017: nd ==> and, 2nd
data/infernal-1.1.3/src/hmmband.c:3017: nd ==> and, 2nd
data/infernal-1.1.3/src/hmmband.c:3020: nd ==> and, 2nd
data/infernal-1.1.3/src/hmmband.c:3020: nd ==> and, 2nd
data/infernal-1.1.3/src/hmmband.c:3021: nd ==> and, 2nd
data/infernal-1.1.3/src/hmmband.c:3021: nd ==> and, 2nd
data/infernal-1.1.3/src/hmmband.c:3059: nd ==> and, 2nd
data/infernal-1.1.3/src/hmmband.c:3059: nd ==> and, 2nd
data/infernal-1.1.3/src/hmmband.c:3059: nd ==> and, 2nd
data/infernal-1.1.3/src/hmmband.c:3060: nd ==> and, 2nd
data/infernal-1.1.3/src/hmmband.c:3061: nd ==> and, 2nd
data/infernal-1.1.3/src/hmmband.c:3062: nd ==> and, 2nd
data/infernal-1.1.3/src/hmmband.c:3063: nd ==> and, 2nd
data/infernal-1.1.3/src/hmmband.c:3105: nd ==> and, 2nd
data/infernal-1.1.3/src/hmmband.c:3105: nd ==> and, 2nd
data/infernal-1.1.3/src/hmmband.c:3105: nd ==> and, 2nd
data/infernal-1.1.3/src/hmmband.c:3106: nd ==> and, 2nd
data/infernal-1.1.3/src/hmmband.c:3106: nd ==> and, 2nd
data/infernal-1.1.3/src/hmmband.c:3106: nd ==> and, 2nd
data/infernal-1.1.3/src/hmmband.c:3112: nd ==> and, 2nd
data/infernal-1.1.3/src/hmmband.c:3120: nd ==> and, 2nd
data/infernal-1.1.3/src/hmmband.c:3157: nd ==> and, 2nd
data/infernal-1.1.3/src/hmmband.c:3191: nd ==> and, 2nd
data/infernal-1.1.3/src/hmmband.c:3191: nd ==> and, 2nd
data/infernal-1.1.3/src/hmmband.c:3194: nd ==> and, 2nd
data/infernal-1.1.3/src/hmmband.c:3194: nd ==> and, 2nd
data/infernal-1.1.3/src/hmmband.c:3194: nd ==> and, 2nd
data/infernal-1.1.3/src/hmmband.c:3194: nd ==> and, 2nd
data/infernal-1.1.3/src/hmmband.c:3194: nd ==> and, 2nd
data/infernal-1.1.3/src/hmmband.c:3194: nd ==> and, 2nd
data/infernal-1.1.3/src/hmmband.c:3194: nd ==> and, 2nd
data/infernal-1.1.3/src/hmmband.c:3194: nd ==> and, 2nd
data/infernal-1.1.3/src/hmmband.c:3198: nd ==> and, 2nd
data/infernal-1.1.3/src/hmmband.c:3198: nd ==> and, 2nd
data/infernal-1.1.3/src/hmmband.c:3198: nd ==> and, 2nd
data/infernal-1.1.3/src/hmmband.c:3199: nd ==> and, 2nd
data/infernal-1.1.3/src/hmmband.c:3199: nd ==> and, 2nd
data/infernal-1.1.3/src/hmmband.c:3199: nd ==> and, 2nd
data/infernal-1.1.3/src/hmmband.c:3200: nd ==> and, 2nd
data/infernal-1.1.3/src/hmmband.c:3201: nd ==> and, 2nd
data/infernal-1.1.3/src/hmmband.c:3205: nd ==> and, 2nd
data/infernal-1.1.3/src/hmmband.c:3205: nd ==> and, 2nd
data/infernal-1.1.3/src/hmmband.c:3926: analagous ==> analogous
data/infernal-1.1.3/src/hmmband.c:4909: nd ==> and, 2nd
data/infernal-1.1.3/src/hmmband.c:4917: nd ==> and, 2nd
data/infernal-1.1.3/src/hmmband.c:4919: nd ==> and, 2nd
data/infernal-1.1.3/src/hmmband.c:4919: nd ==> and, 2nd
data/infernal-1.1.3/src/hmmband.c:4919: nd ==> and, 2nd
data/infernal-1.1.3/src/hmmband.c:4919: nd ==> and, 2nd
data/infernal-1.1.3/src/hmmband.c:4920: nd ==> and, 2nd
data/infernal-1.1.3/src/hmmband.c:4920: nd ==> and, 2nd
data/infernal-1.1.3/src/hmmband.c:4920: nd ==> and, 2nd
data/infernal-1.1.3/src/hmmband.c:4920: nd ==> and, 2nd
data/infernal-1.1.3/src/infernal.h:423: nd ==> and, 2nd
data/infernal-1.1.3/src/infernal.h:423: nd ==> and, 2nd
data/infernal-1.1.3/src/infernal.h:432: nd ==> and, 2nd
data/infernal-1.1.3/src/infernal.h:433: nd ==> and, 2nd
data/infernal-1.1.3/src/infernal.h:862: nd ==> and, 2nd
data/infernal-1.1.3/src/infernal.h:864: nd ==> and, 2nd
data/infernal-1.1.3/src/infernal.h:2287: defintion ==> definition
data/infernal-1.1.3/src/infernal.h:2584: nd ==> and, 2nd
data/infernal-1.1.3/src/infernal.h:2625: nd ==> and, 2nd
data/infernal-1.1.3/src/itest_brute.c:149: lod ==> load
data/infernal-1.1.3/src/itest_brute.c:150: lod ==> load
data/infernal-1.1.3/src/itest_brute.c:151: lod ==> load
data/infernal-1.1.3/src/itest_brute.c:152: lod ==> load
data/infernal-1.1.3/src/itest_brute.c:153: lod ==> load
data/infernal-1.1.3/src/itest_brute.c:154: lod ==> load
data/infernal-1.1.3/src/itest_brute.c:155: lod ==> load
data/infernal-1.1.3/src/itest_brute.c:156: lod ==> load
data/infernal-1.1.3/src/itest_brute.c:157: lod ==> load
data/infernal-1.1.3/src/itest_brute.c:158: lod ==> load
data/infernal-1.1.3/src/itest_brute.c:159: lod ==> load
data/infernal-1.1.3/src/itest_brute.c:160: lod ==> load
data/infernal-1.1.3/src/itest_brute.c:161: lod ==> load
data/infernal-1.1.3/src/itest_brute.c:162: lod ==> load
data/infernal-1.1.3/src/itest_brute.c:163: lod ==> load
data/infernal-1.1.3/src/itest_brute.c:164: lod ==> load
data/infernal-1.1.3/src/itest_brute.c:731: Rigth ==> Right
data/infernal-1.1.3/src/cmbuild.c:709: rigth ==> right
data/infernal-1.1.3/src/cmbuild.c:1051: nd ==> and, 2nd
data/infernal-1.1.3/src/cmbuild.c:1189: nd ==> and, 2nd
data/infernal-1.1.3/src/cmbuild.c:1189: nd ==> and, 2nd
data/infernal-1.1.3/src/cmbuild.c:1189: nd ==> and, 2nd
data/infernal-1.1.3/src/cmbuild.c:1190: nd ==> and, 2nd
data/infernal-1.1.3/src/cmbuild.c:1190: nd ==> and, 2nd
data/infernal-1.1.3/src/cmbuild.c:1191: nd ==> and, 2nd
data/infernal-1.1.3/src/cmbuild.c:1191: nd ==> and, 2nd
data/infernal-1.1.3/src/cmbuild.c:1192: nd ==> and, 2nd
data/infernal-1.1.3/src/cmbuild.c:1193: nd ==> and, 2nd
data/infernal-1.1.3/src/cmbuild.c:1195: nd ==> and, 2nd
data/infernal-1.1.3/src/cmbuild.c:1726: nd ==> and, 2nd
data/infernal-1.1.3/src/cmbuild.c:1727: nd ==> and, 2nd
data/infernal-1.1.3/src/cmbuild.c:1727: nd ==> and, 2nd
data/infernal-1.1.3/src/cmbuild.c:1727: nd ==> and, 2nd
data/infernal-1.1.3/src/cmbuild.c:1728: nd ==> and, 2nd
data/infernal-1.1.3/src/cmbuild.c:1729: nd ==> and, 2nd
data/infernal-1.1.3/src/cmbuild.c:1730: nd ==> and, 2nd
data/infernal-1.1.3/src/cmbuild.c:1839: nd ==> and, 2nd
data/infernal-1.1.3/src/cmbuild.c:1856: nd ==> and, 2nd
data/infernal-1.1.3/src/cmbuild.c:1856: nd ==> and, 2nd
data/infernal-1.1.3/src/cmbuild.c:1856: nd ==> and, 2nd
data/infernal-1.1.3/src/cmbuild.c:1857: nd ==> and, 2nd
data/infernal-1.1.3/src/cmbuild.c:1857: nd ==> and, 2nd
data/infernal-1.1.3/src/cmbuild.c:1857: nd ==> and, 2nd
data/infernal-1.1.3/src/cmbuild.c:1857: nd ==> and, 2nd
data/infernal-1.1.3/src/cmbuild.c:1867: nd ==> and, 2nd
data/infernal-1.1.3/src/cmbuild.c:1867: nd ==> and, 2nd
data/infernal-1.1.3/src/cmbuild.c:1867: nd ==> and, 2nd
data/infernal-1.1.3/src/cmbuild.c:1868: nd ==> and, 2nd
data/infernal-1.1.3/src/cmbuild.c:1868: nd ==> and, 2nd
data/infernal-1.1.3/src/cmbuild.c:1869: nd ==> and, 2nd
data/infernal-1.1.3/src/cmbuild.c:1869: nd ==> and, 2nd
data/infernal-1.1.3/src/cmbuild.c:1870: nd ==> and, 2nd
data/infernal-1.1.3/src/cmbuild.c:1871: nd ==> and, 2nd
data/infernal-1.1.3/src/cmbuild.c:2507: excatly ==> exactly
data/infernal-1.1.3/src/cmbuild.c:2942: nd ==> and, 2nd
data/infernal-1.1.3/src/cmbuild.c:2959: nd ==> and, 2nd
data/infernal-1.1.3/src/cmbuild.c:2966: nd ==> and, 2nd
data/infernal-1.1.3/src/cmbuild.c:2972: nd ==> and, 2nd
data/infernal-1.1.3/src/cmbuild.c:2972: nd ==> and, 2nd
data/infernal-1.1.3/src/cmbuild.c:2977: nd ==> and, 2nd
data/infernal-1.1.3/src/cmbuild.c:2983: nd ==> and, 2nd
data/infernal-1.1.3/src/cmbuild.c:2983: nd ==> and, 2nd
data/infernal-1.1.3/src/cmbuild.c:2994: nd ==> and, 2nd
data/infernal-1.1.3/src/cmbuild.c:3001: nd ==> and, 2nd
data/infernal-1.1.3/src/cmbuild.c:3023: nd ==> and, 2nd
data/infernal-1.1.3/src/cmbuild.c:3023: nd ==> and, 2nd
data/infernal-1.1.3/src/cmbuild.c:3023: nd ==> and, 2nd
data/infernal-1.1.3/src/cmcalibrate.c:2026: succes ==> success
data/infernal-1.1.3/src/cmalign.c:945: recieved ==> received
data/infernal-1.1.3/src/cmalign.c:1192: digitial ==> digital
data/infernal-1.1.3/src/cm_parsetree.c:300: nd ==> and, 2nd
data/infernal-1.1.3/src/cm_parsetree.c:317: nd ==> and, 2nd
data/infernal-1.1.3/src/cm_parsetree.c:373: nd ==> and, 2nd
data/infernal-1.1.3/src/cm_parsetree.c:374: nd ==> and, 2nd
data/infernal-1.1.3/src/cm_parsetree.c:384: nd ==> and, 2nd
data/infernal-1.1.3/src/cm_parsetree.c:385: nd ==> and, 2nd
data/infernal-1.1.3/src/cm_parsetree.c:395: nd ==> and, 2nd
data/infernal-1.1.3/src/cm_parsetree.c:396: nd ==> and, 2nd
data/infernal-1.1.3/src/cm_parsetree.c:697: nd ==> and, 2nd
data/infernal-1.1.3/src/cm_parsetree.c:789: nd ==> and, 2nd
data/infernal-1.1.3/src/cm_parsetree.c:790: nd ==> and, 2nd
data/infernal-1.1.3/src/cm_parsetree.c:794: nd ==> and, 2nd
data/infernal-1.1.3/src/cm_parsetree.c:795: nd ==> and, 2nd
data/infernal-1.1.3/src/cm_parsetree.c:798: nd ==> and, 2nd
data/infernal-1.1.3/src/cm_parsetree.c:801: nd ==> and, 2nd
data/infernal-1.1.3/src/cm_parsetree.c:804: nd ==> and, 2nd
data/infernal-1.1.3/src/cm_parsetree.c:810: nd ==> and, 2nd
data/infernal-1.1.3/src/cm_parsetree.c:815: nd ==> and, 2nd
data/infernal-1.1.3/src/cm_parsetree.c:820: nd ==> and, 2nd
data/infernal-1.1.3/src/cm_parsetree.c:934: nd ==> and, 2nd
data/infernal-1.1.3/src/cm_parsetree.c:935: nd ==> and, 2nd
data/infernal-1.1.3/src/cm_parsetree.c:940: nd ==> and, 2nd
data/infernal-1.1.3/src/cm_parsetree.c:952: nd ==> and, 2nd
data/infernal-1.1.3/src/cm_parsetree.c:966: nd ==> and, 2nd
data/infernal-1.1.3/src/cm_parsetree.c:980: nd ==> and, 2nd
data/infernal-1.1.3/src/cm_parsetree.c:994: nd ==> and, 2nd
data/infernal-1.1.3/src/cm_parsetree.c:1013: nd ==> and, 2nd
data/infernal-1.1.3/src/cm_parsetree.c:1030: nd ==> and, 2nd
data/infernal-1.1.3/src/cm_parsetree.c:1045: nd ==> and, 2nd
data/infernal-1.1.3/src/cm_parsetree.c:1049: nd ==> and, 2nd
data/infernal-1.1.3/src/cm_parsetree.c:1056: nd ==> and, 2nd
data/infernal-1.1.3/src/cm_parsetree.c:1284: parstree ==> parse tree
data/infernal-1.1.3/src/cm_parsetree.c:2274: Dealign ==> Dealing
data/infernal-1.1.3/src/cm_parsetree.c:2337: dealign ==> dealing
data/infernal-1.1.3/src/cm_parsetree.c:2428: nd ==> and, 2nd
data/infernal-1.1.3/src/cm_parsetree.c:2464: nd ==> and, 2nd
data/infernal-1.1.3/src/cm_parsetree.c:2465: nd ==> and, 2nd
data/infernal-1.1.3/src/cm_parsetree.c:2465: nd ==> and, 2nd
data/infernal-1.1.3/src/cm_parsetree.c:2465: nd ==> and, 2nd
data/infernal-1.1.3/src/cm_parsetree.c:2465: nd ==> and, 2nd
data/infernal-1.1.3/src/cm_parsetree.c:2466: nd ==> and, 2nd
data/infernal-1.1.3/src/cm_parsetree.c:2466: nd ==> and, 2nd
data/infernal-1.1.3/src/cm_parsetree.c:2466: nd ==> and, 2nd
data/infernal-1.1.3/src/cm_parsetree.c:2466: nd ==> and, 2nd
data/infernal-1.1.3/src/cm_parsetree.c:2470: nd ==> and, 2nd
data/infernal-1.1.3/src/cm_parsetree.c:2471: nd ==> and, 2nd
data/infernal-1.1.3/src/cm_parsetree.c:2472: nd ==> and, 2nd
data/infernal-1.1.3/src/cm_parsetree.c:2482: nd ==> and, 2nd
data/infernal-1.1.3/src/cm_parsetree.c:2483: nd ==> and, 2nd
data/infernal-1.1.3/src/cm_parsetree.c:2483: nd ==> and, 2nd
data/infernal-1.1.3/src/cm_parsetree.c:2483: nd ==> and, 2nd
data/infernal-1.1.3/src/cm_parsetree.c:2483: nd ==> and, 2nd
data/infernal-1.1.3/src/cm_parsetree.c:2484: nd ==> and, 2nd
data/infernal-1.1.3/src/cm_parsetree.c:2484: nd ==> and, 2nd
data/infernal-1.1.3/src/cm_parsetree.c:2484: nd ==> and, 2nd
data/infernal-1.1.3/src/cm_parsetree.c:2484: nd ==> and, 2nd
data/infernal-1.1.3/src/cm_parsetree.c:2520: nd ==> and, 2nd
data/infernal-1.1.3/src/cm_parsetree.c:2521: nd ==> and, 2nd
data/infernal-1.1.3/src/cm_parsetree.c:2521: nd ==> and, 2nd
data/infernal-1.1.3/src/cm_parsetree.c:2521: nd ==> and, 2nd
data/infernal-1.1.3/src/cm_parsetree.c:2521: nd ==> and, 2nd
data/infernal-1.1.3/src/cm_parsetree.c:2522: nd ==> and, 2nd
data/infernal-1.1.3/src/cm_parsetree.c:2522: nd ==> and, 2nd
data/infernal-1.1.3/src/cm_parsetree.c:2522: nd ==> and, 2nd
data/infernal-1.1.3/src/cm_parsetree.c:2522: nd ==> and, 2nd
data/infernal-1.1.3/src/cm_parsetree.c:2524: nd ==> and, 2nd
data/infernal-1.1.3/src/cm_parsetree.c:2529: nd ==> and, 2nd
data/infernal-1.1.3/src/cm_parsetree.c:2532: nd ==> and, 2nd
data/infernal-1.1.3/src/cm_parsetree.c:2534: nd ==> and, 2nd
data/infernal-1.1.3/src/cm_parsetree.c:2534: nd ==> and, 2nd
data/infernal-1.1.3/src/cm_parsetree.c:2534: nd ==> and, 2nd
data/infernal-1.1.3/src/cm_parsetree.c:2534: nd ==> and, 2nd
data/infernal-1.1.3/src/cm_parsetree.c:2536: nd ==> and, 2nd
data/infernal-1.1.3/src/cm_parsetree.c:2536: nd ==> and, 2nd
data/infernal-1.1.3/src/cm_parsetree.c:2536: nd ==> and, 2nd
data/infernal-1.1.3/src/cm_parsetree.c:2536: nd ==> and, 2nd
data/infernal-1.1.3/src/cm_parsetree.c:2541: nd ==> and, 2nd
data/infernal-1.1.3/src/cm_parsetree.c:2544: nd ==> and, 2nd
data/infernal-1.1.3/src/cm_parsetree.c:2546: nd ==> and, 2nd
data/infernal-1.1.3/src/cm_parsetree.c:2546: nd ==> and, 2nd
data/infernal-1.1.3/src/cm_parsetree.c:2546: nd ==> and, 2nd
data/infernal-1.1.3/src/cm_parsetree.c:2546: nd ==> and, 2nd
data/infernal-1.1.3/src/cm_parsetree.c:2548: nd ==> and, 2nd
data/infernal-1.1.3/src/cm_parsetree.c:2548: nd ==> and, 2nd
data/infernal-1.1.3/src/cm_parsetree.c:2548: nd ==> and, 2nd
data/infernal-1.1.3/src/cm_parsetree.c:2548: nd ==> and, 2nd
data/infernal-1.1.3/src/cm_parsetree.c:3365: irregardless ==> regardless
data/infernal-1.1.3/src/cm_parsetree.c:3979: irregardless ==> regardless
data/infernal-1.1.3/src/cm_qdband.c:758: situtations ==> situations
data/infernal-1.1.3/src/cm_submodel.c:424: nin ==> inn, min, bin, nine
data/infernal-1.1.3/src/cm_submodel.c:443: wnat ==> want, what
data/infernal-1.1.3/src/cm_submodel.c:1040: nin ==> inn, min, bin, nine
data/infernal-1.1.3/src/cm_submodel.c:1208: seperate ==> separate
data/infernal-1.1.3/src/cm_submodel.c:1474: seperate ==> separate
data/infernal-1.1.3/src/cm_submodel.c:1680: nd ==> and, 2nd
data/infernal-1.1.3/src/cm_submodel.c:1680: nd ==> and, 2nd
data/infernal-1.1.3/src/cm_submodel.c:1681: nd ==> and, 2nd
data/infernal-1.1.3/src/cm_submodel.c:1681: nd ==> and, 2nd
data/infernal-1.1.3/src/cm_submodel.c:1682: nd ==> and, 2nd
data/infernal-1.1.3/src/cm_submodel.c:1682: nd ==> and, 2nd
data/infernal-1.1.3/src/cm_submodel.c:1754: nin ==> inn, min, bin, nine
data/infernal-1.1.3/src/cm_submodel.c:1966: tE ==> the, be, we
data/infernal-1.1.3/src/cm_submodel.c:1976: tE ==> the, be, we
data/infernal-1.1.3/src/cm_submodel.c:2071: withing ==> within
data/infernal-1.1.3/src/cm_submodel.c:2330: nin ==> inn, min, bin, nine
data/infernal-1.1.3/src/cm_submodel.c:2600: respectivley ==> respectively
data/infernal-1.1.3/src/cm_submodel.c:2633: nd ==> and, 2nd
data/infernal-1.1.3/src/cm_submodel.c:2745: nd ==> and, 2nd
data/infernal-1.1.3/src/cm_submodel.c:2745: nd ==> and, 2nd
data/infernal-1.1.3/src/cm_submodel.c:2745: nd ==> and, 2nd
data/infernal-1.1.3/src/cm_submodel.c:2747: nd ==> and, 2nd
data/infernal-1.1.3/src/cm_submodel.c:2747: nd ==> and, 2nd
data/infernal-1.1.3/src/cm_submodel.c:2747: nd ==> and, 2nd
data/infernal-1.1.3/src/cm_submodel.c:2747: nd ==> and, 2nd
data/infernal-1.1.3/src/cm_submodel.c:2748: nd ==> and, 2nd
data/infernal-1.1.3/src/cm_submodel.c:2749: nd ==> and, 2nd
data/infernal-1.1.3/src/cm_submodel.c:2773: nd ==> and, 2nd
data/infernal-1.1.3/src/cm_submodel.c:2773: nd ==> and, 2nd
data/infernal-1.1.3/src/cm_submodel.c:2773: nd ==> and, 2nd
data/infernal-1.1.3/src/cm_submodel.c:2775: nd ==> and, 2nd
data/infernal-1.1.3/src/cm_submodel.c:2775: nd ==> and, 2nd
data/infernal-1.1.3/src/cm_submodel.c:2775: nd ==> and, 2nd
data/infernal-1.1.3/src/cm_submodel.c:2775: nd ==> and, 2nd
data/infernal-1.1.3/src/cm_submodel.c:2776: nd ==> and, 2nd
data/infernal-1.1.3/src/cm_submodel.c:2776: nd ==> and, 2nd
data/infernal-1.1.3/src/cm_submodel.c:3048: reconfiged ==> reconfigured
data/infernal-1.1.3/src/cm_submodel.c:3060: nd ==> and, 2nd
data/infernal-1.1.3/src/cm_submodel.c:3090: RECONFIGED ==> RECONFIGURED
data/infernal-1.1.3/src/cm_submodel.c:3092: RECONFIGED ==> RECONFIGURED
data/infernal-1.1.3/src/cm_submodel.c:3234: nd ==> and, 2nd
data/infernal-1.1.3/src/cm_submodel.c:3234: nd ==> and, 2nd
data/infernal-1.1.3/src/cm_submodel.c:3234: nd ==> and, 2nd
data/infernal-1.1.3/src/cm_submodel.c:3236: nd ==> and, 2nd
data/infernal-1.1.3/src/cm_submodel.c:3236: nd ==> and, 2nd
data/infernal-1.1.3/src/cm_submodel.c:3239: nd ==> and, 2nd
data/infernal-1.1.3/src/cm_submodel.c:3239: nd ==> and, 2nd
data/infernal-1.1.3/src/cm_submodel.c:3241: nd ==> and, 2nd
data/infernal-1.1.3/src/cm_submodel.c:3241: nd ==> and, 2nd
data/infernal-1.1.3/src/cm_submodel.c:3243: nd ==> and, 2nd
data/infernal-1.1.3/src/cm_submodel.c:3246: nd ==> and, 2nd
data/infernal-1.1.3/src/cm_submodel.c:3246: nd ==> and, 2nd
data/infernal-1.1.3/src/cm_submodel.c:3248: nd ==> and, 2nd
data/infernal-1.1.3/src/cm_submodel.c:3248: nd ==> and, 2nd
data/infernal-1.1.3/src/cm_submodel.c:3250: nd ==> and, 2nd
data/infernal-1.1.3/src/cm_submodel.c:3252: nd ==> and, 2nd
data/infernal-1.1.3/src/cm_submodel.c:3254: nd ==> and, 2nd
data/infernal-1.1.3/src/cm_submodel.c:3254: nd ==> and, 2nd
data/infernal-1.1.3/src/cm_submodel.c:3282: parstree ==> parse tree
data/infernal-1.1.3/src/cm_submodel.c:3291: parstree ==> parse tree
data/infernal-1.1.3/src/cm_submodel.c:3292: parstree ==> parse tree
data/infernal-1.1.3/src/cm_submodel.c:3306: nd ==> and, 2nd
data/infernal-1.1.3/src/cm_submodel.c:3315: nd ==> and, 2nd
data/infernal-1.1.3/src/cm_submodel.c:3365: nd ==> and, 2nd
data/infernal-1.1.3/src/cm_submodel.c:3366: nd ==> and, 2nd
data/infernal-1.1.3/src/cm_submodel.c:3366: nd ==> and, 2nd
data/infernal-1.1.3/src/cm_submodel.c:3366: nd ==> and, 2nd
data/infernal-1.1.3/src/cm_submodel.c:3367: nd ==> and, 2nd
data/infernal-1.1.3/src/cm_submodel.c:3367: nd ==> and, 2nd
data/infernal-1.1.3/src/cm_submodel.c:3370: nd ==> and, 2nd
data/infernal-1.1.3/src/cm_submodel.c:3370: nd ==> and, 2nd
data/infernal-1.1.3/src/cm_submodel.c:3370: nd ==> and, 2nd
data/infernal-1.1.3/src/cm_submodel.c:3372: nd ==> and, 2nd
data/infernal-1.1.3/src/cm_submodel.c:3373: nd ==> and, 2nd
data/infernal-1.1.3/src/cm_submodel.c:3374: nd ==> and, 2nd
data/infernal-1.1.3/src/cm_submodel.c:3375: nd ==> and, 2nd
data/infernal-1.1.3/src/cm_submodel.c:3376: nd ==> and, 2nd
data/infernal-1.1.3/src/cm_submodel.c:3377: nd ==> and, 2nd
data/infernal-1.1.3/src/cm_submodel.c:3378: nd ==> and, 2nd
data/infernal-1.1.3/src/cm_submodel.c:3379: nd ==> and, 2nd
data/infernal-1.1.3/src/cm_submodel.c:3498: nd ==> and, 2nd
data/infernal-1.1.3/src/cm_submodel.c:3498: nd ==> and, 2nd
data/infernal-1.1.3/src/cm_submodel.c:3498: nd ==> and, 2nd
data/infernal-1.1.3/src/cm_submodel.c:3500: nd ==> and, 2nd
data/infernal-1.1.3/src/cm_submodel.c:3502: nd ==> and, 2nd
data/infernal-1.1.3/src/cm_submodel.c:3503: nd ==> and, 2nd
data/infernal-1.1.3/src/cm_submodel.c:3503: nd ==> and, 2nd
data/infernal-1.1.3/src/cm_submodel.c:3504: nd ==> and, 2nd
data/infernal-1.1.3/src/cm_submodel.c:3505: nd ==> and, 2nd
data/infernal-1.1.3/src/cm_submodel.c:3506: nd ==> and, 2nd
data/infernal-1.1.3/src/cm_submodel.c:3506: nd ==> and, 2nd
data/infernal-1.1.3/src/cm_submodel.c:3507: nd ==> and, 2nd
data/infernal-1.1.3/src/cm_submodel.c:3508: nd ==> and, 2nd
data/infernal-1.1.3/src/cm_submodel.c:3509: nd ==> and, 2nd
data/infernal-1.1.3/src/cm_submodel.c:3510: nd ==> and, 2nd
data/infernal-1.1.3/src/cm_submodel.c:3511: nd ==> and, 2nd
data/infernal-1.1.3/src/cm_submodel.c:3511: nd ==> and, 2nd
data/infernal-1.1.3/src/cm_submodel.c:3571: nd ==> and, 2nd
data/infernal-1.1.3/src/cm_submodel.c:3571: nd ==> and, 2nd
data/infernal-1.1.3/src/cm_submodel.c:3571: nd ==> and, 2nd
data/infernal-1.1.3/src/cm_submodel.c:3573: nd ==> and, 2nd
data/infernal-1.1.3/src/cm_submodel.c:3573: nd ==> and, 2nd
data/infernal-1.1.3/src/cm_submodel.c:3573: nd ==> and, 2nd
data/infernal-1.1.3/src/cm_submodel.c:3574: nd ==> and, 2nd
data/infernal-1.1.3/src/cm_submodel.c:3575: nd ==> and, 2nd
data/infernal-1.1.3/src/cm_submodel.c:3575: nd ==> and, 2nd
data/infernal-1.1.3/src/cm_submodel.c:3575: nd ==> and, 2nd
data/infernal-1.1.3/src/cm_submodel.c:3575: nd ==> and, 2nd
data/infernal-1.1.3/src/cm_submodel.c:3579: nd ==> and, 2nd
data/infernal-1.1.3/src/cm_submodel.c:3579: nd ==> and, 2nd
data/infernal-1.1.3/src/cm_submodel.c:3579: nd ==> and, 2nd
data/infernal-1.1.3/src/cm_submodel.c:3580: nd ==> and, 2nd
data/infernal-1.1.3/src/cm_submodel.c:3580: nd ==> and, 2nd
data/infernal-1.1.3/src/cm_submodel.c:3580: nd ==> and, 2nd
data/infernal-1.1.3/src/cm_submodel.c:3580: nd ==> and, 2nd
data/infernal-1.1.3/src/cm_submodel.c:3580: nd ==> and, 2nd
data/infernal-1.1.3/src/cm_submodel.c:3580: nd ==> and, 2nd
data/infernal-1.1.3/src/cm_submodel.c:3632: nd ==> and, 2nd
data/infernal-1.1.3/src/cm_submodel.c:3769: nd ==> and, 2nd
data/infernal-1.1.3/src/cm_submodel.c:3794: nd ==> and, 2nd
data/infernal-1.1.3/src/cm_submodel.c:3794: nd ==> and, 2nd
data/infernal-1.1.3/src/cm_submodel.c:3794: nd ==> and, 2nd
data/infernal-1.1.3/src/cm_submodel.c:3795: nd ==> and, 2nd
data/infernal-1.1.3/src/cm_submodel.c:3795: nd ==> and, 2nd
data/infernal-1.1.3/src/cm_submodel.c:3796: nd ==> and, 2nd
data/infernal-1.1.3/src/cm_submodel.c:3796: nd ==> and, 2nd
data/infernal-1.1.3/src/cm_submodel.c:3798: nd ==> and, 2nd
data/infernal-1.1.3/src/cm_submodel.c:3799: nd ==> and, 2nd
data/infernal-1.1.3/src/cm_submodel.c:3804: nd ==> and, 2nd
data/infernal-1.1.3/src/cm_submodel.c:3804: nd ==> and, 2nd
data/infernal-1.1.3/src/cm_submodel.c:3804: nd ==> and, 2nd
data/infernal-1.1.3/src/cm_submodel.c:3805: nd ==> and, 2nd
data/infernal-1.1.3/src/cm_submodel.c:3805: nd ==> and, 2nd
data/infernal-1.1.3/src/cm_submodel.c:3806: nd ==> and, 2nd
data/infernal-1.1.3/src/cm_submodel.c:3806: nd ==> and, 2nd
data/infernal-1.1.3/src/cm_submodel.c:3807: nd ==> and, 2nd
data/infernal-1.1.3/src/cm_submodel.c:3808: nd ==> and, 2nd
data/infernal-1.1.3/src/cm_submodel.c:3810: nd ==> and, 2nd
data/infernal-1.1.3/src/cm_submodel.c:3811: nd ==> and, 2nd
data/infernal-1.1.3/src/cm_submodel.c:4349: nd ==> and, 2nd
data/infernal-1.1.3/src/cm_submodel.c:4379: nd ==> and, 2nd
data/infernal-1.1.3/src/cm_submodel.c:4379: nd ==> and, 2nd
data/infernal-1.1.3/src/cm_submodel.c:4379: nd ==> and, 2nd
data/infernal-1.1.3/src/cm_submodel.c:4382: nd ==> and, 2nd
data/infernal-1.1.3/src/cm_submodel.c:4382: nd ==> and, 2nd
data/infernal-1.1.3/src/cm_submodel.c:4385: nd ==> and, 2nd
data/infernal-1.1.3/src/cm_submodel.c:4386: nd ==> and, 2nd
data/infernal-1.1.3/src/cm_submodel.c:4398: nd ==> and, 2nd
data/infernal-1.1.3/src/cm_submodel.c:4401: nd ==> and, 2nd
data/infernal-1.1.3/src/cm_submodel.c:4401: nd ==> and, 2nd
data/infernal-1.1.3/src/cm_submodel.c:4403: nd ==> and, 2nd
data/infernal-1.1.3/src/cm_submodel.c:4403: nd ==> and, 2nd
data/infernal-1.1.3/src/cm_submodel.c:4408: nd ==> and, 2nd
data/infernal-1.1.3/src/cm_submodel.c:4409: nd ==> and, 2nd
data/infernal-1.1.3/src/cm_submodel.c:4409: nd ==> and, 2nd
data/infernal-1.1.3/src/rnamat.c:3: subsitution ==> substitution
data/infernal-1.1.3/src/rnamat.c:819: probabilites ==> probabilities
data/infernal-1.1.3/src/rnamat.c:885: didnt' ==> didn't
data/infernal-1.1.3/src/rnamat.h:125: minium ==> minimum
data/infernal-1.1.3/src/truncyk.c:82: aviod ==> avoid
data/infernal-1.1.3/src/truncyk_check.c:27: indentical ==> identical
data/infernal-1.1.3/src/alphabet.c:329: degnerate ==> degenerate
data/infernal-1.1.3/src/cm.c:905: nd ==> and, 2nd
data/infernal-1.1.3/src/cm.c:930: nd ==> and, 2nd
data/infernal-1.1.3/src/cm.c:930: nd ==> and, 2nd
data/infernal-1.1.3/src/cm.c:930: nd ==> and, 2nd
data/infernal-1.1.3/src/cm.c:931: nd ==> and, 2nd
data/infernal-1.1.3/src/cm.c:931: nd ==> and, 2nd
data/infernal-1.1.3/src/cm.c:932: nd ==> and, 2nd
data/infernal-1.1.3/src/cm.c:932: nd ==> and, 2nd
data/infernal-1.1.3/src/cm.c:934: nd ==> and, 2nd
data/infernal-1.1.3/src/cm.c:935: nd ==> and, 2nd
data/infernal-1.1.3/src/cm.c:940: nd ==> and, 2nd
data/infernal-1.1.3/src/cm.c:940: nd ==> and, 2nd
data/infernal-1.1.3/src/cm.c:940: nd ==> and, 2nd
data/infernal-1.1.3/src/cm.c:941: nd ==> and, 2nd
data/infernal-1.1.3/src/cm.c:941: nd ==> and, 2nd
data/infernal-1.1.3/src/cm.c:942: nd ==> and, 2nd
data/infernal-1.1.3/src/cm.c:942: nd ==> and, 2nd
data/infernal-1.1.3/src/cm.c:943: nd ==> and, 2nd
data/infernal-1.1.3/src/cm.c:944: nd ==> and, 2nd
data/infernal-1.1.3/src/cm.c:946: nd ==> and, 2nd
data/infernal-1.1.3/src/cm.c:947: nd ==> and, 2nd
data/infernal-1.1.3/src/cm.c:1027: nd ==> and, 2nd
data/infernal-1.1.3/src/cm.c:1029: nd ==> and, 2nd
data/infernal-1.1.3/src/cm.c:1029: nd ==> and, 2nd
data/infernal-1.1.3/src/cm.c:1029: nd ==> and, 2nd
data/infernal-1.1.3/src/cm.c:1030: nd ==> and, 2nd
data/infernal-1.1.3/src/cm.c:1784: should'nt ==> shouldn't
data/infernal-1.1.3/src/cm.c:2516: nd ==> and, 2nd
data/infernal-1.1.3/src/cm.c:2518: nd ==> and, 2nd
data/infernal-1.1.3/src/cm.c:2948: nd ==> and, 2nd
data/infernal-1.1.3/src/cm.c:2950: nd ==> and, 2nd
data/infernal-1.1.3/src/cm.c:2950: nd ==> and, 2nd
data/infernal-1.1.3/src/cm.c:2950: nd ==> and, 2nd
data/infernal-1.1.3/src/cm.c:2951: nd ==> and, 2nd
data/infernal-1.1.3/src/cm.c:2951: nd ==> and, 2nd
data/infernal-1.1.3/src/cm.c:4253: nd ==> and, 2nd
data/infernal-1.1.3/src/cm.c:4257: nd ==> and, 2nd
data/infernal-1.1.3/src/cm.c:4281: nd ==> and, 2nd
data/infernal-1.1.3/src/cm.c:4281: nd ==> and, 2nd
data/infernal-1.1.3/src/cm.c:4281: nd ==> and, 2nd
data/infernal-1.1.3/src/cm.c:4282: nd ==> and, 2nd
data/infernal-1.1.3/src/cm.c:4282: nd ==> and, 2nd
data/infernal-1.1.3/src/cm.c:4283: nd ==> and, 2nd
data/infernal-1.1.3/src/cm.c:4283: nd ==> and, 2nd
data/infernal-1.1.3/src/cm.c:4284: nd ==> and, 2nd
data/infernal-1.1.3/src/cm.c:4285: nd ==> and, 2nd
data/infernal-1.1.3/src/cm.c:4287: nd ==> and, 2nd
data/infernal-1.1.3/src/cm.c:4321: nd ==> and, 2nd
data/infernal-1.1.3/src/cm.c:4321: nd ==> and, 2nd
data/infernal-1.1.3/src/cm.c:4321: nd ==> and, 2nd
data/infernal-1.1.3/src/cm.c:4323: nd ==> and, 2nd
data/infernal-1.1.3/src/cm.c:4324: nd ==> and, 2nd
data/infernal-1.1.3/src/cm.c:4324: nd ==> and, 2nd
data/infernal-1.1.3/src/cm.c:4328: nd ==> and, 2nd
data/infernal-1.1.3/src/cm.c:4330: nd ==> and, 2nd
data/infernal-1.1.3/src/cm.c:4404: nd ==> and, 2nd
data/infernal-1.1.3/src/cm.c:4423: nd ==> and, 2nd
data/infernal-1.1.3/src/cm.c:4424: nd ==> and, 2nd
data/infernal-1.1.3/src/cm.c:4425: nd ==> and, 2nd
data/infernal-1.1.3/src/cm.c:4426: nd ==> and, 2nd
data/infernal-1.1.3/src/cm.c:4426: nd ==> and, 2nd
data/infernal-1.1.3/src/cm.c:4426: nd ==> and, 2nd
data/infernal-1.1.3/src/cm.c:4886: nd ==> and, 2nd
data/infernal-1.1.3/src/cm.c:4890: nd ==> and, 2nd
data/infernal-1.1.3/src/cm.c:4892: nd ==> and, 2nd
data/infernal-1.1.3/src/cm.c:4943: nd ==> and, 2nd
data/infernal-1.1.3/src/cm.c:4986: nd ==> and, 2nd
data/infernal-1.1.3/src/cm.c:5002: nd ==> and, 2nd
data/infernal-1.1.3/src/cm.c:5002: nd ==> and, 2nd
data/infernal-1.1.3/src/cm.c:5002: nd ==> and, 2nd
data/infernal-1.1.3/src/cm.c:5004: nd ==> and, 2nd
data/infernal-1.1.3/src/cm.c:5005: nd ==> and, 2nd
data/infernal-1.1.3/src/cm.c:5005: nd ==> and, 2nd
data/infernal-1.1.3/src/cm.c:5006: nd ==> and, 2nd
data/infernal-1.1.3/src/cm.c:5007: nd ==> and, 2nd
data/infernal-1.1.3/src/cm.c:5007: nd ==> and, 2nd
data/infernal-1.1.3/src/cm.c:5010: nd ==> and, 2nd
data/infernal-1.1.3/src/cm.c:5011: nd ==> and, 2nd
data/infernal-1.1.3/src/cm.c:5012: nd ==> and, 2nd
data/infernal-1.1.3/src/cm.c:5013: nd ==> and, 2nd
data/infernal-1.1.3/src/cm.c:5014: nd ==> and, 2nd
data/infernal-1.1.3/src/cm.c:5017: nd ==> and, 2nd
data/infernal-1.1.3/src/cm.c:5018: nd ==> and, 2nd
data/infernal-1.1.3/src/cm.c:5018: nd ==> and, 2nd
data/infernal-1.1.3/src/cm.c:5019: nd ==> and, 2nd
data/infernal-1.1.3/src/cm.c:5020: nd ==> and, 2nd
data/infernal-1.1.3/src/cm.c:5021: nd ==> and, 2nd
data/infernal-1.1.3/src/cm.c:5026: nd ==> and, 2nd
data/infernal-1.1.3/src/cm.c:5029: nd ==> and, 2nd
data/infernal-1.1.3/src/cm.c:5030: nd ==> and, 2nd
data/infernal-1.1.3/src/cm.c:5030: nd ==> and, 2nd
data/infernal-1.1.3/src/cm.c:5031: nd ==> and, 2nd
data/infernal-1.1.3/src/cm.c:5032: nd ==> and, 2nd
data/infernal-1.1.3/src/cm.c:5033: nd ==> and, 2nd
data/infernal-1.1.3/src/cm.c:5036: nd ==> and, 2nd
data/infernal-1.1.3/src/cm.c:5039: nd ==> and, 2nd
data/infernal-1.1.3/src/cm.c:5040: nd ==> and, 2nd
data/infernal-1.1.3/src/cm.c:5040: nd ==> and, 2nd
data/infernal-1.1.3/src/cm.c:5041: nd ==> and, 2nd
data/infernal-1.1.3/src/cm.c:5042: nd ==> and, 2nd
data/infernal-1.1.3/src/cm.c:5043: nd ==> and, 2nd
data/infernal-1.1.3/src/cm.c:5047: nd ==> and, 2nd
data/infernal-1.1.3/src/cm.c:5050: nd ==> and, 2nd
data/infernal-1.1.3/src/cm.c:5052: nd ==> and, 2nd
data/infernal-1.1.3/src/cm.c:5052: nd ==> and, 2nd
data/infernal-1.1.3/src/cm.c:5053: nd ==> and, 2nd
data/infernal-1.1.3/src/cm.c:5054: nd ==> and, 2nd
data/infernal-1.1.3/src/cm.c:5055: nd ==> and, 2nd
data/infernal-1.1.3/src/cm.c:5059: nd ==> and, 2nd
data/infernal-1.1.3/src/cm.c:5062: nd ==> and, 2nd
data/infernal-1.1.3/src/cm.c:5063: nd ==> and, 2nd
data/infernal-1.1.3/src/cm.c:5063: nd ==> and, 2nd
data/infernal-1.1.3/src/cm.c:5064: nd ==> and, 2nd
data/infernal-1.1.3/src/cm.c:5065: nd ==> and, 2nd
data/infernal-1.1.3/src/cm.c:5066: nd ==> and, 2nd
data/infernal-1.1.3/src/cm.c:5070: nd ==> and, 2nd
data/infernal-1.1.3/src/cm.c:5073: nd ==> and, 2nd
data/infernal-1.1.3/src/cm.c:5074: nd ==> and, 2nd
data/infernal-1.1.3/src/cm.c:5074: nd ==> and, 2nd
data/infernal-1.1.3/src/cm.c:5075: nd ==> and, 2nd
data/infernal-1.1.3/src/cm.c:5076: nd ==> and, 2nd
data/infernal-1.1.3/src/cm.c:5077: nd ==> and, 2nd
data/infernal-1.1.3/src/cm.c:5082: nd ==> and, 2nd
data/infernal-1.1.3/src/cm.c:5085: nd ==> and, 2nd
data/infernal-1.1.3/src/cm.c:5086: nd ==> and, 2nd
data/infernal-1.1.3/src/cm.c:5087: nd ==> and, 2nd
data/infernal-1.1.3/src/cm.c:5088: nd ==> and, 2nd
data/infernal-1.1.3/src/cm.c:5089: nd ==> and, 2nd
data/infernal-1.1.3/src/cm.c:5091: nd ==> and, 2nd
data/infernal-1.1.3/src/cm.c:5096: nd ==> and, 2nd
data/infernal-1.1.3/src/cm.c:5100: nd ==> and, 2nd
data/infernal-1.1.3/src/cm_alidisplay.c:66: nd ==> and, 2nd
data/infernal-1.1.3/src/cm_alidisplay.c:152: nd ==> and, 2nd
data/infernal-1.1.3/src/cm_alidisplay.c:153: nd ==> and, 2nd
data/infernal-1.1.3/src/cm_alidisplay.c:153: nd ==> and, 2nd
data/infernal-1.1.3/src/cm_alidisplay.c:161: nd ==> and, 2nd
data/infernal-1.1.3/src/cm_alidisplay.c:165: nd ==> and, 2nd
data/infernal-1.1.3/src/cm_alidisplay.c:166: nd ==> and, 2nd
data/infernal-1.1.3/src/cm_alidisplay.c:167: nd ==> and, 2nd
data/infernal-1.1.3/src/cm_alidisplay.c:219: trival ==> trivial
data/infernal-1.1.3/src/cm_alidisplay.c:365: nd ==> and, 2nd
data/infernal-1.1.3/src/cm_alidisplay.c:366: nd ==> and, 2nd
data/infernal-1.1.3/src/cm_alidisplay.c:366: nd ==> and, 2nd
data/infernal-1.1.3/src/cm_alidisplay.c:404: nd ==> and, 2nd
data/infernal-1.1.3/src/cm_alidisplay.c:405: nd ==> and, 2nd
data/infernal-1.1.3/src/cm_alidisplay.c:406: nd ==> and, 2nd
data/infernal-1.1.3/src/cm_alidisplay.c:447: nd ==> and, 2nd
data/infernal-1.1.3/src/cm_alidisplay.c:447: nd ==> and, 2nd
data/infernal-1.1.3/src/cm_alidisplay.c:461: nd ==> and, 2nd
data/infernal-1.1.3/src/cm_alidisplay.c:461: nd ==> and, 2nd
data/infernal-1.1.3/src/cm_alidisplay.c:593: parstree ==> parse tree
data/infernal-1.1.3/src/cm_alidisplay.c:1188: betweeen ==> between
data/infernal-1.1.3/src/cm_dpalign.c:1423: satisified ==> satisfied
data/infernal-1.1.3/src/cm_dpalign.c:2054: satisified ==> satisfied
data/infernal-1.1.3/src/cm_dpalign.c:2796: satisified ==> satisfied
data/infernal-1.1.3/src/cm_dpalign.c:2997: Oustide ==> Outside
data/infernal-1.1.3/src/cm_dpalign.c:3393: Oustide ==> Outside
data/infernal-1.1.3/src/cm_dpalign.c:3481: satisified ==> satisfied
data/infernal-1.1.3/src/cm_dpalign.c:3531: satisified ==> satisfied
data/infernal-1.1.3/src/cm_dpalign.c:4015: Oustide ==> Outside
data/infernal-1.1.3/src/cm_dpalign.c:4326: Oustide ==> Outside
data/infernal-1.1.3/src/cm_dpalign.c:4414: satisified ==> satisfied
data/infernal-1.1.3/src/cm_dpalign.c:4464: satisified ==> satisfied
data/infernal-1.1.3/src/cm_dpalign.c:4814: enought ==> enough
data/infernal-1.1.3/src/cm_dpalign.c:4908: enought ==> enough
data/infernal-1.1.3/src/cm_dpalign.c:5404: parstree ==> parse tree
data/infernal-1.1.3/src/cm_dpalign_trunc.c:468: invalide ==> invalid
data/infernal-1.1.3/src/cm_dpalign_trunc.c:2649: satisified ==> satisfied
data/infernal-1.1.3/src/cm_dpalign_trunc.c:4071: satisified ==> satisfied
data/infernal-1.1.3/src/cm_dpalign_trunc.c:5851: satisified ==> satisfied
data/infernal-1.1.3/src/cm_dpalign_trunc.c:6798: satisified ==> satisfied
data/infernal-1.1.3/src/cm_dpalign_trunc.c:6891: satisified ==> satisfied
data/infernal-1.1.3/src/cm_dpalign_trunc.c:8083: satisified ==> satisfied
data/infernal-1.1.3/src/cm_dpalign_trunc.c:8176: satisified ==> satisfied
data/infernal-1.1.3/src/cm_dpalign_trunc.c:8683: enought ==> enough
data/infernal-1.1.3/src/cm_dpalign_trunc.c:8833: enought ==> enough
data/infernal-1.1.3/src/cm_dpalign_trunc.c:9591: parstree ==> parse tree
data/infernal-1.1.3/src/cm_dpalign_trunc.c:9696: parstree ==> parse tree
data/infernal-1.1.3/src/cm_dpsearch.c:94: resoultion ==> resolution
data/infernal-1.1.3/src/cm_dpsearch.c:722: resoultion ==> resolution
data/infernal-1.1.3/src/cm_dpsearch.c:1110: resoultion ==> resolution
data/infernal-1.1.3/src/cm_dpsearch.c:1735: resoultion ==> resolution
data/infernal-1.1.3/src/cm_dpsearch.c:2363: resoultion ==> resolution
data/infernal-1.1.3/src/cm_dpsearch.c:2741: resoultion ==> resolution
data/infernal-1.1.3/src/cm_dpsearch.c:3244: resoultion ==> resolution
data/infernal-1.1.3/src/cm_dpsearch.c:3589: satisified ==> satisfied
data/infernal-1.1.3/src/cm_dpsearch.c:3781: resoultion ==> resolution
data/infernal-1.1.3/src/cm_dpsearch.c:4103: satisified ==> satisfied
data/infernal-1.1.3/src/cm_dpsearch_trunc.c:83: resoultion ==> resolution
data/infernal-1.1.3/src/cm_dpsearch_trunc.c:745: resoultion ==> resolution
data/infernal-1.1.3/src/cm_dpsearch_trunc.c:1391: resoultion ==> resolution
data/infernal-1.1.3/src/cm_dpsearch_trunc.c:2091: satisified ==> satisfied
data/infernal-1.1.3/src/cm_dpsearch_trunc.c:2494: resoultion ==> resolution
data/infernal-1.1.3/src/cm_dpsearch_trunc.c:3194: satisified ==> satisfied
data/infernal-1.1.3/src/cm_dpsmall.c:140: analagous ==> analogous
data/infernal-1.1.3/src/cm_dpsmall.c:143: analagous ==> analogous
data/infernal-1.1.3/src/cm_dpsmall.c:239: seperate ==> separate
data/infernal-1.1.3/src/cm_dpsmall.c:559: childs ==> children, child's
data/infernal-1.1.3/src/cm_dpsmall.c:1092: alloced ==> allocated
data/infernal-1.1.3/src/cm_dpsmall.c:4149: alloced ==> allocated
data/infernal-1.1.3/src/cm_dpsmall.c:5807: unnecssary ==> unnecessary
data/infernal-1.1.3/src/cm_dpsmall.c:6685: satisified ==> satisfied
data/infernal-1.1.3/src/cm_file.c:539: syncronize ==> synchronize
data/infernal-1.1.3/src/cm_file.c:601: nd ==> and, 2nd
data/infernal-1.1.3/src/cm_file.c:617: ALPH ==> ALPHA
data/infernal-1.1.3/src/cm_file.c:680: nd ==> and, 2nd
data/infernal-1.1.3/src/cm_file.c:683: nd ==> and, 2nd
data/infernal-1.1.3/src/cm_file.c:684: nd ==> and, 2nd
data/infernal-1.1.3/src/cm_file.c:684: nd ==> and, 2nd
data/infernal-1.1.3/src/cm_file.c:689: nd ==> and, 2nd
data/infernal-1.1.3/src/cm_file.c:689: nd ==> and, 2nd
data/infernal-1.1.3/src/cm_file.c:689: nd ==> and, 2nd
data/infernal-1.1.3/src/cm_file.c:690: nd ==> and, 2nd
data/infernal-1.1.3/src/cm_file.c:690: nd ==> and, 2nd
data/infernal-1.1.3/src/cm_file.c:691: nd ==> and, 2nd
data/infernal-1.1.3/src/cm_file.c:691: nd ==> and, 2nd
data/infernal-1.1.3/src/cm_file.c:698: nd ==> and, 2nd
data/infernal-1.1.3/src/cm_file.c:698: nd ==> and, 2nd
data/infernal-1.1.3/src/cm_file.c:698: nd ==> and, 2nd
data/infernal-1.1.3/src/cm_file.c:699: nd ==> and, 2nd
data/infernal-1.1.3/src/cm_file.c:699: nd ==> and, 2nd
data/infernal-1.1.3/src/cm_file.c:700: nd ==> and, 2nd
data/infernal-1.1.3/src/cm_file.c:700: nd ==> and, 2nd
data/infernal-1.1.3/src/cm_file.c:704: nd ==> and, 2nd
data/infernal-1.1.3/src/cm_file.c:704: nd ==> and, 2nd
data/infernal-1.1.3/src/cm_file.c:704: nd ==> and, 2nd
data/infernal-1.1.3/src/cm_file.c:705: nd ==> and, 2nd
data/infernal-1.1.3/src/cm_file.c:705: nd ==> and, 2nd
data/infernal-1.1.3/src/cm_file.c:706: nd ==> and, 2nd
data/infernal-1.1.3/src/cm_file.c:706: nd ==> and, 2nd
data/infernal-1.1.3/src/cm_file.c:1548: nd ==> and, 2nd
data/infernal-1.1.3/src/cm_file.c:1633: ALPH ==> ALPHA
data/infernal-1.1.3/src/cm_file.c:1634: ALPH ==> ALPHA
data/infernal-1.1.3/src/cm_file.c:1737: ALPH ==> ALPHA
data/infernal-1.1.3/src/cm_file.c:1737: ALPH ==> ALPHA
data/infernal-1.1.3/src/cm_file.c:1814: ALPH ==> ALPHA
data/infernal-1.1.3/src/cm_file.c:1849: nd ==> and, 2nd
data/infernal-1.1.3/src/cm_file.c:1864: nd ==> and, 2nd
data/infernal-1.1.3/src/cm_file.c:1865: nd ==> and, 2nd
data/infernal-1.1.3/src/cm_file.c:1866: nd ==> and, 2nd
data/infernal-1.1.3/src/cm_file.c:1867: nd ==> and, 2nd
data/infernal-1.1.3/src/cm_file.c:1868: nd ==> and, 2nd
data/infernal-1.1.3/src/cm_file.c:1869: nd ==> and, 2nd
data/infernal-1.1.3/src/cm_file.c:1870: nd ==> and, 2nd
data/infernal-1.1.3/src/cm_file.c:1871: nd ==> and, 2nd
data/infernal-1.1.3/src/cm_file.c:1881: nd ==> and, 2nd
data/infernal-1.1.3/src/cm_file.c:1884: nd ==> and, 2nd
data/infernal-1.1.3/src/cm_file.c:1885: nd ==> and, 2nd
data/infernal-1.1.3/src/cm_file.c:1887: nd ==> and, 2nd
data/infernal-1.1.3/src/cm_file.c:1890: nd ==> and, 2nd
data/infernal-1.1.3/src/cm_file.c:1891: nd ==> and, 2nd
data/infernal-1.1.3/src/cm_file.c:1893: nd ==> and, 2nd
data/infernal-1.1.3/src/cm_file.c:1896: nd ==> and, 2nd
data/infernal-1.1.3/src/cm_file.c:1897: nd ==> and, 2nd
data/infernal-1.1.3/src/cm_file.c:1902: nd ==> and, 2nd
data/infernal-1.1.3/src/cm_file.c:1903: nd ==> and, 2nd
data/infernal-1.1.3/src/cm_file.c:1909: nd ==> and, 2nd
data/infernal-1.1.3/src/cm_file.c:1910: nd ==> and, 2nd
data/infernal-1.1.3/src/cm_file.c:1911: nd ==> and, 2nd
data/infernal-1.1.3/src/cm_file.c:1913: nd ==> and, 2nd
data/infernal-1.1.3/src/cm_file.c:1915: nd ==> and, 2nd
data/infernal-1.1.3/src/cm_file.c:1916: nd ==> and, 2nd
data/infernal-1.1.3/src/cm_file.c:1918: nd ==> and, 2nd
data/infernal-1.1.3/src/cm_file.c:1920: nd ==> and, 2nd
data/infernal-1.1.3/src/cm_file.c:1921: nd ==> and, 2nd
data/infernal-1.1.3/src/cm_file.c:1926: nd ==> and, 2nd
data/infernal-1.1.3/src/cm_file.c:1927: nd ==> and, 2nd
data/infernal-1.1.3/src/cm_file.c:1933: nd ==> and, 2nd
data/infernal-1.1.3/src/cm_file.c:1934: nd ==> and, 2nd
data/infernal-1.1.3/src/cm_file.c:1935: nd ==> and, 2nd
data/infernal-1.1.3/src/cm_file.c:1937: nd ==> and, 2nd
data/infernal-1.1.3/src/cm_file.c:1939: nd ==> and, 2nd
data/infernal-1.1.3/src/cm_file.c:1940: nd ==> and, 2nd
data/infernal-1.1.3/src/cm_file.c:1942: nd ==> and, 2nd
data/infernal-1.1.3/src/cm_file.c:1944: nd ==> and, 2nd
data/infernal-1.1.3/src/cm_file.c:1945: nd ==> and, 2nd
data/infernal-1.1.3/src/cm_file.c:1950: nd ==> and, 2nd
data/infernal-1.1.3/src/cm_file.c:1951: nd ==> and, 2nd
data/infernal-1.1.3/src/cm_file.c:2034: nd ==> and, 2nd
data/infernal-1.1.3/src/cm_file.c:2035: nd ==> and, 2nd
data/infernal-1.1.3/src/cm_file.c:2069: nd ==> and, 2nd
data/infernal-1.1.3/src/cm_file.c:2069: nd ==> and, 2nd
data/infernal-1.1.3/src/cm_file.c:2069: nd ==> and, 2nd
data/infernal-1.1.3/src/cm_file.c:2070: nd ==> and, 2nd
data/infernal-1.1.3/src/cm_file.c:2070: nd ==> and, 2nd
data/infernal-1.1.3/src/cm_file.c:2070: nd ==> and, 2nd
data/infernal-1.1.3/src/cm_file.c:2070: nd ==> and, 2nd
data/infernal-1.1.3/src/cm_file.c:2071: nd ==> and, 2nd
data/infernal-1.1.3/src/cm_file.c:2071: nd ==> and, 2nd
data/infernal-1.1.3/src/cm_file.c:2071: nd ==> and, 2nd
data/infernal-1.1.3/src/cm_file.c:2071: nd ==> and, 2nd
data/infernal-1.1.3/src/cm_file.c:2077: nd ==> and, 2nd
data/infernal-1.1.3/src/cm_file.c:2077: nd ==> and, 2nd
data/infernal-1.1.3/src/cm_file.c:2077: nd ==> and, 2nd
data/infernal-1.1.3/src/cm_file.c:2078: nd ==> and, 2nd
data/infernal-1.1.3/src/cm_file.c:2078: nd ==> and, 2nd
data/infernal-1.1.3/src/cm_file.c:2078: nd ==> and, 2nd
data/infernal-1.1.3/src/cm_file.c:2078: nd ==> and, 2nd
data/infernal-1.1.3/src/cm_file.c:2079: nd ==> and, 2nd
data/infernal-1.1.3/src/cm_file.c:2079: nd ==> and, 2nd
data/infernal-1.1.3/src/cm_file.c:2079: nd ==> and, 2nd
data/infernal-1.1.3/src/cm_file.c:2079: nd ==> and, 2nd
data/infernal-1.1.3/src/cm_file.c:2085: nd ==> and, 2nd
data/infernal-1.1.3/src/cm_file.c:2085: nd ==> and, 2nd
data/infernal-1.1.3/src/cm_file.c:2085: nd ==> and, 2nd
data/infernal-1.1.3/src/cm_file.c:2086: nd ==> and, 2nd
data/infernal-1.1.3/src/cm_file.c:2086: nd ==> and, 2nd
data/infernal-1.1.3/src/cm_file.c:2086: nd ==> and, 2nd
data/infernal-1.1.3/src/cm_file.c:2086: nd ==> and, 2nd
data/infernal-1.1.3/src/cm_file.c:2087: nd ==> and, 2nd
data/infernal-1.1.3/src/cm_file.c:2087: nd ==> and, 2nd
data/infernal-1.1.3/src/cm_file.c:2087: nd ==> and, 2nd
data/infernal-1.1.3/src/cm_file.c:2087: nd ==> and, 2nd
data/infernal-1.1.3/src/cm_file.c:2313: nd ==> and, 2nd
data/infernal-1.1.3/src/cm_file.c:2592: ot ==> to, of, or
data/infernal-1.1.3/src/cm_file.c:2625: nd ==> and, 2nd
data/infernal-1.1.3/src/cm_file.c:2641: nd ==> and, 2nd
data/infernal-1.1.3/src/cm_file.c:2642: nd ==> and, 2nd
data/infernal-1.1.3/src/cm_file.c:2643: nd ==> and, 2nd
data/infernal-1.1.3/src/cm_file.c:2644: nd ==> and, 2nd
data/infernal-1.1.3/src/cm_file.c:2645: nd ==> and, 2nd
data/infernal-1.1.3/src/cm_file.c:2646: nd ==> and, 2nd
data/infernal-1.1.3/src/cm_file.c:2703: nd ==> and, 2nd
data/infernal-1.1.3/src/cm_file.c:2704: nd ==> and, 2nd
data/infernal-1.1.3/src/cm_file.c:2867: ALPH ==> ALPHA
data/infernal-1.1.3/src/cm_file.c:2868: ALPH ==> ALPHA
data/infernal-1.1.3/src/cm_file.c:3115: ALPH ==> ALPHA
data/infernal-1.1.3/src/cm_file.c:3377: convertable ==> convertible
data/infernal-1.1.3/src/cm_file.c:3445: nd ==> and, 2nd
data/infernal-1.1.3/src/cm_file.c:3498: nd ==> and, 2nd
data/infernal-1.1.3/src/cm_file.c:3502: nd ==> and, 2nd
data/infernal-1.1.3/src/cm_file.c:3503: nd ==> and, 2nd
data/infernal-1.1.3/src/cm_file.c:3503: nd ==> and, 2nd
data/infernal-1.1.3/src/cm_modelconfig.c:125: construced ==> constructed, construed
data/infernal-1.1.3/src/cm_modelconfig.c:399: nd ==> and, 2nd
data/infernal-1.1.3/src/cm_modelconfig.c:408: nd ==> and, 2nd
data/infernal-1.1.3/src/cm_modelconfig.c:408: nd ==> and, 2nd
data/infernal-1.1.3/src/cm_modelconfig.c:408: nd ==> and, 2nd
data/infernal-1.1.3/src/cm_modelconfig.c:409: nd ==> and, 2nd
data/infernal-1.1.3/src/cm_modelconfig.c:409: nd ==> and, 2nd
data/infernal-1.1.3/src/cm_modelconfig.c:410: nd ==> and, 2nd
data/infernal-1.1.3/src/cm_modelconfig.c:410: nd ==> and, 2nd
data/infernal-1.1.3/src/cm_modelconfig.c:420: nd ==> and, 2nd
data/infernal-1.1.3/src/cm_modelconfig.c:420: nd ==> and, 2nd
data/infernal-1.1.3/src/cm_modelconfig.c:420: nd ==> and, 2nd
data/infernal-1.1.3/src/cm_modelconfig.c:421: nd ==> and, 2nd
data/infernal-1.1.3/src/cm_modelconfig.c:421: nd ==> and, 2nd
data/infernal-1.1.3/src/cm_modelconfig.c:422: nd ==> and, 2nd
data/infernal-1.1.3/src/cm_modelconfig.c:422: nd ==> and, 2nd
data/infernal-1.1.3/src/cm_modelconfig.c:423: nd ==> and, 2nd
data/infernal-1.1.3/src/cm_modelconfig.c:471: nd ==> and, 2nd
data/infernal-1.1.3/src/cm_modelconfig.c:499: nd ==> and, 2nd
data/infernal-1.1.3/src/cm_modelconfig.c:499: nd ==> and, 2nd
data/infernal-1.1.3/src/cm_modelconfig.c:499: nd ==> and, 2nd
data/infernal-1.1.3/src/cm_modelconfig.c:500: nd ==> and, 2nd
data/infernal-1.1.3/src/cm_modelconfig.c:500: nd ==> and, 2nd
data/infernal-1.1.3/src/cm_modelconfig.c:501: nd ==> and, 2nd
data/infernal-1.1.3/src/cm_modelconfig.c:501: nd ==> and, 2nd
data/infernal-1.1.3/src/cm_modelconfig.c:502: nd ==> and, 2nd
data/infernal-1.1.3/src/cm_modelconfig.c:503: nd ==> and, 2nd
data/infernal-1.1.3/src/cm_modelconfig.c:513: nd ==> and, 2nd
data/infernal-1.1.3/src/cm_modelconfig.c:513: nd ==> and, 2nd
data/infernal-1.1.3/src/cm_modelconfig.c:513: nd ==> and, 2nd
data/infernal-1.1.3/src/cm_modelconfig.c:514: nd ==> and, 2nd
data/infernal-1.1.3/src/cm_modelconfig.c:514: nd ==> and, 2nd
data/infernal-1.1.3/src/cm_modelconfig.c:515: nd ==> and, 2nd
data/infernal-1.1.3/src/cm_modelconfig.c:515: nd ==> and, 2nd
data/infernal-1.1.3/src/cm_modelconfig.c:516: nd ==> and, 2nd
data/infernal-1.1.3/src/cm_modelconfig.c:517: nd ==> and, 2nd
data/infernal-1.1.3/src/cm_modelconfig.c:519: nd ==> and, 2nd
data/infernal-1.1.3/src/cm_modelconfig.c:692: nd ==> and, 2nd
data/infernal-1.1.3/src/cm_modelconfig.c:708: nd ==> and, 2nd
data/infernal-1.1.3/src/cm_modelconfig.c:709: nd ==> and, 2nd
data/infernal-1.1.3/src/cm_modelconfig.c:709: nd ==> and, 2nd
data/infernal-1.1.3/src/cm_modelconfig.c:710: nd ==> and, 2nd
data/infernal-1.1.3/src/cm_modelconfig.c:710: nd ==> and, 2nd
data/infernal-1.1.3/src/cm_modelconfig.c:711: nd ==> and, 2nd
data/infernal-1.1.3/src/cm_modelconfig.c:712: nd ==> and, 2nd
data/infernal-1.1.3/src/cm_modelconfig.c:712: nd ==> and, 2nd
data/infernal-1.1.3/src/cm_modelconfig.c:734: nd ==> and, 2nd
data/infernal-1.1.3/src/cm_modelconfig.c:734: nd ==> and, 2nd
data/infernal-1.1.3/src/cm_modelconfig.c:734: nd ==> and, 2nd
data/infernal-1.1.3/src/cm_modelconfig.c:735: nd ==> and, 2nd
data/infernal-1.1.3/src/cm_modelconfig.c:735: nd ==> and, 2nd
data/infernal-1.1.3/src/cm_modelconfig.c:736: nd ==> and, 2nd
data/infernal-1.1.3/src/cm_modelconfig.c:736: nd ==> and, 2nd
data/infernal-1.1.3/src/cm_modelconfig.c:737: nd ==> and, 2nd
data/infernal-1.1.3/src/cm_modelconfig.c:738: nd ==> and, 2nd
data/infernal-1.1.3/src/cm_mx.c:7407: implictly ==> implicitly
data/infernal-1.1.3/src/cm_mx.c:7431: implictly ==> implicitly
data/infernal-1.1.3/src/cm_p7_band.c:386: nd ==> and, 2nd
data/infernal-1.1.3/src/cm_p7_band.c:398: nd ==> and, 2nd
data/infernal-1.1.3/src/cm_p7_band.c:402: nd ==> and, 2nd
data/infernal-1.1.3/src/cm_p7_band.c:403: nd ==> and, 2nd
data/infernal-1.1.3/src/cm_p7_band.c:407: nd ==> and, 2nd
data/infernal-1.1.3/src/cm_p7_band.c:411: nd ==> and, 2nd
data/infernal-1.1.3/src/cm_p7_band.c:415: nd ==> and, 2nd
data/infernal-1.1.3/src/cm_p7_band.c:419: nd ==> and, 2nd
data/infernal-1.1.3/src/cm_p7_band.c:1743: dervied ==> derived
data/infernal-1.1.3/src/cm_p7_band.c:1853: dervied ==> derived
data/infernal-1.1.3/src/cm_p7_band.c:2018: dervied ==> derived
data/infernal-1.1.3/src/cm_p7_band.c:2205: unchaged ==> unchanged
data/infernal-1.1.3/src/cm_p7_band.c:2206: unchaged ==> unchanged
data/infernal-1.1.3/src/cm_modelmaker.c:65: occurence ==> occurrence
data/infernal-1.1.3/src/cm_modelmaker.c:70: occurence ==> occurrence
data/infernal-1.1.3/src/cm_modelmaker.c:1623: nd ==> and, 2nd
data/infernal-1.1.3/src/cm_modelmaker.c:1663: nd ==> and, 2nd
data/infernal-1.1.3/src/cm_modelmaker.c:1663: nd ==> and, 2nd
data/infernal-1.1.3/src/cm_modelmaker.c:1663: nd ==> and, 2nd
data/infernal-1.1.3/src/cm_modelmaker.c:1665: nd ==> and, 2nd
data/infernal-1.1.3/src/cm_modelmaker.c:1667: nd ==> and, 2nd
data/infernal-1.1.3/src/cm_modelmaker.c:1667: nd ==> and, 2nd
data/infernal-1.1.3/src/cm_modelmaker.c:1668: nd ==> and, 2nd
data/infernal-1.1.3/src/cm_modelmaker.c:1668: nd ==> and, 2nd
data/infernal-1.1.3/src/cm_modelmaker.c:1672: nd ==> and, 2nd
data/infernal-1.1.3/src/cm_modelmaker.c:1672: nd ==> and, 2nd
data/infernal-1.1.3/src/cm_modelmaker.c:1676: nd ==> and, 2nd
data/infernal-1.1.3/src/cm_modelmaker.c:1676: nd ==> and, 2nd
data/infernal-1.1.3/src/cm_modelmaker.c:1680: nd ==> and, 2nd
data/infernal-1.1.3/src/cm_modelmaker.c:1680: nd ==> and, 2nd
data/infernal-1.1.3/src/cm_tophits.c:238: irregardless ==> regardless
data/infernal-1.1.3/src/cm_tophits.c:269: irregardless ==> regardless
data/infernal-1.1.3/src/cm_tophits.c:302: irregardless ==> regardless
data/infernal-1.1.3/src/cm_tophits.c:1721: colum ==> column
data/infernal-1.1.3/src/cm_tophits.c:2888: nd ==> and, 2nd
data/infernal-1.1.3/src/cm_tophits.c:2889: nd ==> and, 2nd
data/infernal-1.1.3/src/cm_tophits.c:2889: nd ==> and, 2nd
data/infernal-1.1.3/src/cm_tophits.c:2889: nd ==> and, 2nd
data/infernal-1.1.3/src/cm_tophits.c:2889: nd ==> and, 2nd
data/infernal-1.1.3/src/cm_tophits.c:2890: nd ==> and, 2nd
data/infernal-1.1.3/src/cm_tophits.c:2890: nd ==> and, 2nd
data/infernal-1.1.3/src/cm_tophits.c:2890: nd ==> and, 2nd
data/infernal-1.1.3/src/cm_tophits.c:2890: nd ==> and, 2nd
data/infernal-1.1.3/src/impl_sse/cm_optimized.c:23: Fuction ==> Function
data/infernal-1.1.3/src/impl_sse/cm_optimized.c:157: Fuction ==> Function
data/infernal-1.1.3/src/impl_sse/cm_optimized.c:385: lenght ==> length
data/infernal-1.1.3/src/impl_sse/sse_cmsearch.c:89: nullL ==> null
data/infernal-1.1.3/src/impl_sse/sse_cmsearch.c:110: hist ==> heist, his
data/infernal-1.1.3/src/impl_sse/sse_cmsearch.c:168: nullL ==> null
data/infernal-1.1.3/src/impl_sse/sse_cmsearch.c:175: nullL ==> null
data/infernal-1.1.3/src/impl_sse/sse_cmsearch.c:177: nullL ==> null
data/infernal-1.1.3/src/impl_sse/sse_cmsearch.c:177: nullL ==> null
data/infernal-1.1.3/src/impl_sse/sse_cmsearch.c:189: nullL ==> null
data/infernal-1.1.3/src/impl_sse/sse_cmsearch.c:225: hist ==> heist, his
data/infernal-1.1.3/src/impl_sse/sse_cmsearch.c:233: hist ==> heist, his
data/infernal-1.1.3/src/impl_sse/sse_cmsearch.c:235: hist ==> heist, his
data/infernal-1.1.3/src/impl_sse/sse_cmsearch.c:238: hist ==> heist, his
data/infernal-1.1.3/src/impl_sse/sse_cmsearch.c:240: hist ==> heist, his
data/infernal-1.1.3/src/impl_sse/sse_cmsearch.c:270: hist ==> heist, his
data/infernal-1.1.3/src/impl_sse/sse_cm_dpsearch.c:52: succes ==> success
data/infernal-1.1.3/src/impl_sse/sse_cm_dpsearch.c:64: resoultion ==> resolution
data/infernal-1.1.3/src/impl_sse/sse_cm_dpsmall.c:1178: alloced ==> allocated
data/infernal-1.1.3/src/impl_sse/sse_cm_dpsmall.c:1667: possibilty ==> possibility
data/infernal-1.1.3/src/impl_sse/sse_cm_dpsmall.c:4073: possibilty ==> possibility
data/infernal-1.1.3/src/impl_sse/sse_cmcons_hitmx.c:121: succes ==> success
data/infernal-1.1.3/src/impl_sse/sse_cmcons_mscyk.c:76: succes ==> success
data/infernal-1.1.3/src/impl_sse/sse_cmcons_mscyk.c:88: resoultion ==> resolution
data/infernal-1.1.3/src/impl_sse/sse_cmcons_mscyk.c:298: seqence ==> sequence
data/infernal-1.1.3/src/impl_sse/sse_cmcons_mscyk.c:299: Becuase ==> Because
data/infernal-1.1.3/src/impl_sse/sse_cmcons_mscyk.c:1275: nullL ==> null
data/infernal-1.1.3/src/impl_sse/sse_cmcons_mscyk.c:1294: nullL ==> null
data/infernal-1.1.3/src/impl_sse/sse_cmcons_mscyk.c:1295: nullL ==> null
data/infernal-1.1.3/src/impl_sse/sse_cmcons_mscyk.c:1296: nullL ==> null
data/infernal-1.1.3/src/impl_sse/sse_cmcons_mscyk.c:1296: nullL ==> null
data/infernal-1.1.3/testsuite/4.c.cm:9: ALPH ==> ALPHA
data/infernal-1.1.3/testsuite/4.c.cm:330: ALPH ==> ALPHA
data/infernal-1.1.3/testsuite/4.c.cm:571: ALPH ==> ALPHA
data/infernal-1.1.3/testsuite/4.c.cm:993: ALPH ==> ALPHA
data/infernal-1.1.3/testsuite/4.c.cm:1321: ALPH ==> ALPHA
data/infernal-1.1.3/testsuite/4.c.cm:1714: ALPH ==> ALPHA
data/infernal-1.1.3/testsuite/4.c.cm:2006: ALPH ==> ALPHA
data/infernal-1.1.3/testsuite/4.c.cm:3180: ALPH ==> ALPHA
data/infernal-1.1.3/testsuite/5.c.cm:9: ALPH ==> ALPHA
data/infernal-1.1.3/testsuite/5.c.cm:330: ALPH ==> ALPHA
data/infernal-1.1.3/testsuite/5.c.cm:571: ALPH ==> ALPHA
data/infernal-1.1.3/testsuite/5.c.cm:993: ALPH ==> ALPHA
data/infernal-1.1.3/testsuite/5.c.cm:1321: ALPH ==> ALPHA
data/infernal-1.1.3/testsuite/5.c.cm:1714: ALPH ==> ALPHA
data/infernal-1.1.3/testsuite/5.c.cm:2006: ALPH ==> ALPHA
data/infernal-1.1.3/testsuite/5.c.cm:3180: ALPH ==> ALPHA
data/infernal-1.1.3/testsuite/5.c.cm:4122: ALPH ==> ALPHA
data/infernal-1.1.3/testsuite/5.c.cm:4523: ALPH ==> ALPHA
data/infernal-1.1.3/testsuite/Plant_SRP.c.cm:9: ALPH ==> ALPHA
data/infernal-1.1.3/testsuite/Plant_SRP.c.cm:1183: ALPH ==> ALPHA
data/infernal-1.1.3/testsuite/Vault.c.cm:9: ALPH ==> ALPHA
data/infernal-1.1.3/testsuite/Vault.c.cm:431: ALPH ==> ALPHA
data/infernal-1.1.3/testsuite/bug-i28.cm:7: ALPH ==> ALPHA
data/infernal-1.1.3/testsuite/bug-i28.cm:1169: ALPH ==> ALPHA
data/infernal-1.1.3/testsuite/bug-i31.cm:9: ALPH ==> ALPHA
data/infernal-1.1.3/testsuite/bug-i31.cm:330: ALPH ==> ALPHA
data/infernal-1.1.3/testsuite/bug-i33.cm:9: ALPH ==> ALPHA
data/infernal-1.1.3/testsuite/bug-i33.cm:273: ALPH ==> ALPHA
data/infernal-1.1.3/testsuite/bug-i34.cm:9: ALPH ==> ALPHA
data/infernal-1.1.3/testsuite/bug-i34.cm:229: ALPH ==> ALPHA
data/infernal-1.1.3/testsuite/bug-i36.cm:7: ALPH ==> ALPHA
data/infernal-1.1.3/testsuite/bug-i36.cm:802: ALPH ==> ALPHA
data/infernal-1.1.3/testsuite/bug-i37.cm:7: ALPH ==> ALPHA
data/infernal-1.1.3/testsuite/bug-i37.cm:672: ALPH ==> ALPHA
data/infernal-1.1.3/testsuite/bug-i43.cm:7: ALPH ==> ALPHA
data/infernal-1.1.3/testsuite/bug-i43.cm:13392: ALPH ==> ALPHA
data/infernal-1.1.3/testsuite/rnaseP-eubact.c.cm:7: ALPH ==> ALPHA
data/infernal-1.1.3/testsuite/rnaseP-eubact.c.cm:1252: ALPH ==> ALPHA
data/infernal-1.1.3/testsuite/snR75.c.cm:9: ALPH ==> ALPHA
data/infernal-1.1.3/testsuite/snR75.c.cm:402: ALPH ==> ALPHA
data/infernal-1.1.3/testsuite/srp-euk.c.cm:7: ALPH ==> ALPHA
data/infernal-1.1.3/testsuite/srp-euk.c.cm:1175: ALPH ==> ALPHA
data/infernal-1.1.3/testsuite/srp-euk.sto:26: THA ==> THAN, THAT, THE
data/infernal-1.1.3/testsuite/srp-euk.sto:27: THA ==> THAN, THAT, THE
data/infernal-1.1.3/testsuite/srp-euk.sto:44: MOR ==> MORE
data/infernal-1.1.3/testsuite/srp-euk.sto:45: MOR ==> MORE
data/infernal-1.1.3/testsuite/srp-euk.sto:102: THA ==> THAN, THAT, THE
data/infernal-1.1.3/testsuite/srp-euk.sto:103: THA ==> THAN, THAT, THE
data/infernal-1.1.3/testsuite/srp-euk.sto:120: MOR ==> MORE
data/infernal-1.1.3/testsuite/srp-euk.sto:121: MOR ==> MORE
data/infernal-1.1.3/testsuite/srp-euk.sto:178: THA ==> THAN, THAT, THE
data/infernal-1.1.3/testsuite/srp-euk.sto:179: THA ==> THAN, THAT, THE
data/infernal-1.1.3/testsuite/srp-euk.sto:196: MOR ==> MORE
data/infernal-1.1.3/testsuite/srp-euk.sto:197: MOR ==> MORE
data/infernal-1.1.3/testsuite/srp-euk.sto:254: THA ==> THAN, THAT, THE
data/infernal-1.1.3/testsuite/srp-euk.sto:255: THA ==> THAN, THAT, THE
data/infernal-1.1.3/testsuite/srp-euk.sto:272: MOR ==> MORE
data/infernal-1.1.3/testsuite/srp-euk.sto:273: MOR ==> MORE
data/infernal-1.1.3/testsuite/srp-euk.sto:330: THA ==> THAN, THAT, THE
data/infernal-1.1.3/testsuite/srp-euk.sto:331: THA ==> THAN, THAT, THE
data/infernal-1.1.3/testsuite/srp-euk.sto:348: MOR ==> MORE
data/infernal-1.1.3/testsuite/srp-euk.sto:349: MOR ==> MORE
data/infernal-1.1.3/testsuite/srp-euk.sto:406: THA ==> THAN, THAT, THE
data/infernal-1.1.3/testsuite/srp-euk.sto:407: THA ==> THAN, THAT, THE
data/infernal-1.1.3/testsuite/srp-euk.sto:424: MOR ==> MORE
data/infernal-1.1.3/testsuite/srp-euk.sto:425: MOR ==> MORE
data/infernal-1.1.3/testsuite/srp-euk.sto:482: THA ==> THAN, THAT, THE
data/infernal-1.1.3/testsuite/srp-euk.sto:483: THA ==> THAN, THAT, THE
data/infernal-1.1.3/testsuite/srp-euk.sto:500: MOR ==> MORE
data/infernal-1.1.3/testsuite/srp-euk.sto:501: MOR ==> MORE
data/infernal-1.1.3/testsuite/tRNA-Sec.c.cm:8: ALPH ==> ALPHA
data/infernal-1.1.3/testsuite/tRNA-Sec.c.cm:409: ALPH ==> ALPHA
data/infernal-1.1.3/testsuite/tRNA.c.cm:9: ALPH ==> ALPHA
data/infernal-1.1.3/testsuite/tRNA.c.cm:330: ALPH ==> ALPHA
data/infernal-1.1.3/testsuite/tRNA1415G.c.cm:7: ALPH ==> ALPHA
data/infernal-1.1.3/testsuite/tRNA1415G.c.cm:324: ALPH ==> ALPHA
data/infernal-1.1.3/testsuite/bug-i45.cm:8: ALPH ==> ALPHA
data/infernal-1.1.3/testsuite/bug-i45.cm:5997: ALPH ==> ALPHA
data/infernal-1.1.3/testsuite/bug-i49.cm:7: ALPH ==> ALPHA
data/infernal-1.1.3/testsuite/bug-i49.cm:170: ALPH ==> ALPHA
data/infernal-1.1.3/testsuite/dev_testsuite.sqc:38: copyting ==> copying
data/infernal-1.1.3/testsuite/dev_testsuite.sqc:364: seperate ==> separate
data/infernal-1.1.3/testsuite/dev_testsuite.sqc:661: ba ==> by, be
data/infernal-1.1.3/testsuite/dev_testsuite.sqc:662: ba ==> by, be
data/infernal-1.1.3/testsuite/dev_testsuite.sqc:664: ba ==> by, be
data/infernal-1.1.3/testsuite/dev_testsuite.sqc:665: ba ==> by, be
data/infernal-1.1.3/testsuite/parse_test_results.py:37: expectes ==> expects
data/infernal-1.1.3/testsuite/parse_test_results.py:79: expectes ==> expects
data/infernal-1.1.3/tutorial/tRNA5.c.cm:7: ALPH ==> ALPHA
data/infernal-1.1.3/tutorial/tRNA5.c.cm:328: ALPH ==> ALPHA
data/infernal-1.1.3/tutorial/5S_rRNA.c.cm:9: ALPH ==> ALPHA
data/infernal-1.1.3/tutorial/5S_rRNA.c.cm:504: ALPH ==> ALPHA
data/infernal-1.1.3/tutorial/Cobalamin.c.cm:9: ALPH ==> ALPHA
data/infernal-1.1.3/tutorial/Cobalamin.c.cm:795: ALPH ==> ALPHA
data/infernal-1.1.3/tutorial/minifam.cm:7: ALPH ==> ALPHA
data/infernal-1.1.3/tutorial/minifam.cm:328: ALPH ==> ALPHA
data/infernal-1.1.3/tutorial/minifam.cm:572: ALPH ==> ALPHA
data/infernal-1.1.3/tutorial/minifam.cm:1067: ALPH ==> ALPHA
data/infernal-1.1.3/tutorial/minifam.cm:1455: ALPH ==> ALPHA
data/infernal-1.1.3/tutorial/minifam.cm:2241: ALPH ==> ALPHA
data/infernal-1.1.3/tutorial/tRNA5-hand.c.cm:7: ALPH ==> ALPHA
data/infernal-1.1.3/tutorial/tRNA5-hand.c.cm:336: ALPH ==> ALPHA
data/infernal-1.1.3/easel/esl_buffer.c:913: whereever ==> wherever
data/infernal-1.1.3/easel/esl_buffer.tex:366: sharable ==> shareable
data/infernal-1.1.3/easel/esl_cluster.c:127: assigments ==> assignments
data/infernal-1.1.3/easel/esl_distance.c:329: maches ==> matches
data/infernal-1.1.3/easel/esl_dmatrix.c:766: equivalant ==> equivalent
data/infernal-1.1.3/easel/esl_gamma.c:490: subsituting ==> substituting
data/infernal-1.1.3/easel/esl_gamma.c:611: valide ==> valid
data/infernal-1.1.3/easel/esl_getopts.h:38: convertable ==> convertible
data/infernal-1.1.3/easel/esl_getopts.h:39: convertable ==> convertible
data/infernal-1.1.3/easel/esl_gumbel.c:550: curiousity ==> curiosity
data/infernal-1.1.3/easel/esl_hyperexp.c:150: coeffients ==> coefficients
data/infernal-1.1.3/easel/esl_msa.c:434: alloced ==> allocated
data/infernal-1.1.3/easel/esl_msacluster.c:116: nin ==> inn, min, bin, nine
data/infernal-1.1.3/easel/esl_msacluster.c:142: nin ==> inn, min, bin, nine
data/infernal-1.1.3/easel/esl_msacluster.c:143: nin ==> inn, min, bin, nine
data/infernal-1.1.3/easel/esl_msacluster.c:145: nin ==> inn, min, bin, nine
data/infernal-1.1.3/easel/esl_msacluster.c:146: nin ==> inn, min, bin, nine
data/infernal-1.1.3/easel/esl_msacluster.c:158: nin ==> inn, min, bin, nine
data/infernal-1.1.3/easel/esl_msacluster.c:158: nin ==> inn, min, bin, nine
data/infernal-1.1.3/easel/esl_msacluster.c:264: nin ==> inn, min, bin, nine
data/infernal-1.1.3/easel/esl_msacluster.c:267: nin ==> inn, min, bin, nine
data/infernal-1.1.3/easel/esl_msacluster.c:271: nin ==> inn, min, bin, nine
data/infernal-1.1.3/easel/esl_msacluster.c:370: nin ==> inn, min, bin, nine
data/infernal-1.1.3/easel/esl_msacluster.c:384: nin ==> inn, min, bin, nine
data/infernal-1.1.3/easel/esl_msacluster.c:390: nin ==> inn, min, bin, nine
data/infernal-1.1.3/easel/esl_msacluster.c:396: nin ==> inn, min, bin, nine
data/infernal-1.1.3/easel/esl_msafile.c:1250: succes ==> success
data/infernal-1.1.3/easel/esl_msafile_a2m.c:266: wee ==> we
data/infernal-1.1.3/easel/esl_msaweight.c:1577: nD ==> and, 2nd
data/infernal-1.1.3/easel/esl_msaweight.c:1611: nD ==> and, 2nd
data/infernal-1.1.3/easel/esl_neon.c:216: substract ==> subtract
data/infernal-1.1.3/easel/esl_random.c:717: probabilty ==> probability
data/infernal-1.1.3/easel/esl_ratematrix.c:401: subsitution ==> substitution
data/infernal-1.1.3/easel/esl_ratematrix.tex:2: subsitution ==> substitution
data/infernal-1.1.3/easel/esl_recorder.c:97: circularly ==> circular
data/infernal-1.1.3/easel/esl_recorder.h:46: circularly ==> circular
data/infernal-1.1.3/easel/esl_regexp.c:1894: fo ==> of, for
data/infernal-1.1.3/easel/esl_regexp.tex:115: ba ==> by, be
data/infernal-1.1.3/easel/esl_regexp.tex:307: fo ==> of, for
data/infernal-1.1.3/easel/esl_regexp.tex:307: fo ==> of, for
data/infernal-1.1.3/easel/esl_regexp.tex:359: fo ==> of, for
data/infernal-1.1.3/easel/esl_sq.c:963: crossreferences ==> cross-references
data/infernal-1.1.3/easel/esl_sqio.c:389: sequece ==> sequence
data/infernal-1.1.3/easel/esl_sqio.c:1130: sequnces ==> sequences
data/infernal-1.1.3/easel/esl_sqio_ascii.c:3121: foramt ==> format
data/infernal-1.1.3/easel/esl_sqio_ncbi.c:309: makeing ==> making
data/infernal-1.1.3/easel/esl_sqio_ncbi.c:420: enought ==> enough
data/infernal-1.1.3/easel/esl_sqio_ncbi.c:488: structre ==> structure
data/infernal-1.1.3/easel/esl_sqio_ncbi.c:493: upsupported ==> unsupported
data/infernal-1.1.3/easel/esl_sqio_ncbi.c:538: sentinal ==> sentinel
data/infernal-1.1.3/easel/esl_sqio_ncbi.c:1459: sentinal ==> sentinel
data/infernal-1.1.3/easel/esl_sqio_ncbi.c:2261: atleast ==> at least
data/infernal-1.1.3/easel/esl_sqio_ncbi.c:2322: characer ==> character
data/infernal-1.1.3/easel/esl_sqio_ncbi.c:2338: atleast ==> at least
data/infernal-1.1.3/easel/esl_sqio_ncbi.c:2369: atleast ==> at least
data/infernal-1.1.3/easel/esl_sqio_ncbi.c:2404: atleast ==> at least
data/infernal-1.1.3/easel/esl_sqio_ncbi.c:2425: defition ==> definition
data/infernal-1.1.3/easel/esl_ssi.tex:178: heterogenous ==> heterogeneous
data/infernal-1.1.3/easel/esl_stopwatch.c:330: numer ==> number
data/infernal-1.1.3/easel/esl_tree.c:197: alloced ==> allocated
data/infernal-1.1.3/easel/esl_tree.c:476: OTU ==> OUT
data/infernal-1.1.3/easel/esl_tree.c:537: shouldbe ==> should, should be
data/infernal-1.1.3/easel/esl_tree.c:594: shouldbe ==> should, should be
data/infernal-1.1.3/easel/esl_tree.c:595: shouldbe ==> should, should be
data/infernal-1.1.3/easel/esl_tree.c:595: shouldbe ==> should, should be
data/infernal-1.1.3/easel/esl_tree.c:596: shouldbe ==> should, should be
data/infernal-1.1.3/easel/esl_tree.c:596: shouldbe ==> should, should be
data/infernal-1.1.3/easel/esl_tree.c:597: shouldbe ==> should, should be
data/infernal-1.1.3/easel/esl_tree.c:1583: nin ==> inn, min, bin, nine
data/infernal-1.1.3/easel/esl_tree.c:1611: nin ==> inn, min, bin, nine
data/infernal-1.1.3/easel/esl_tree.c:1614: nin ==> inn, min, bin, nine
data/infernal-1.1.3/easel/esl_tree.c:1675: nin ==> inn, min, bin, nine
data/infernal-1.1.3/easel/esl_tree.c:1675: nin ==> inn, min, bin, nine
data/infernal-1.1.3/easel/esl_tree.c:1684: nin ==> inn, min, bin, nine
data/infernal-1.1.3/easel/esl_tree.c:1684: nin ==> inn, min, bin, nine
data/infernal-1.1.3/easel/esl_tree.c:1696: nin ==> inn, min, bin, nine
data/infernal-1.1.3/easel/esl_tree.c:1696: nin ==> inn, min, bin, nine
data/infernal-1.1.3/easel/esl_tree.c:1696: nin ==> inn, min, bin, nine
data/infernal-1.1.3/easel/esl_tree.c:1696: nin ==> inn, min, bin, nine
data/infernal-1.1.3/easel/esl_tree.c:1711: nin ==> inn, min, bin, nine
data/infernal-1.1.3/easel/esl_tree.c:1711: nin ==> inn, min, bin, nine
data/infernal-1.1.3/easel/esl_tree.c:1718: nin ==> inn, min, bin, nine
data/infernal-1.1.3/easel/esl_tree.c:1727: nin ==> inn, min, bin, nine
data/infernal-1.1.3/easel/esl_tree.c:1727: nin ==> inn, min, bin, nine
data/infernal-1.1.3/easel/esl_vmx.h:78: Resturns ==> Returns
data/infernal-1.1.3/easel/esl_vmx.h:95: Resturns ==> Returns
data/infernal-1.1.3/easel/esl_vmx.h:113: Resturns ==> Returns
data/infernal-1.1.3/easel/esl_vmx.h:130: Resturns ==> Returns
data/infernal-1.1.3/easel/esl_vmx.h:148: Resturns ==> Returns
data/infernal-1.1.3/easel/esl_workqueue.c:157: arguement ==> argument
data/infernal-1.1.3/easel/esl_wuss.c:150: Attemting ==> Attempting
data/infernal-1.1.3/easel/esl_wuss.c:279: sigle ==> single, sigil
data/infernal-1.1.3/easel/esl_wuss.c:377: Attemting ==> Attempting
data/infernal-1.1.3/easel/config.guess:362: Ake ==> Ache
data/infernal-1.1.3/easel/config.sub:254: ba ==> by, be
data/infernal-1.1.3/easel/config.sub:851: msdos ==> ms-dos
data/infernal-1.1.3/easel/easel.c:985: This'd ==> This would
data/infernal-1.1.3/easel/easel.c:1439: Dealign ==> Dealing
data/infernal-1.1.3/easel/easel.c:1441: Dealign ==> Dealing
data/infernal-1.1.3/easel/easel.c:1446: dealign ==> dealing
data/infernal-1.1.3/easel/easel.c:1447: dealign ==> dealing
data/infernal-1.1.3/easel/easel.c:1452: dealign ==> dealing
data/infernal-1.1.3/easel/easel.c:1460: dealign ==> dealing
data/infernal-1.1.3/easel/easel.c:1463: dealign ==> dealing
data/infernal-1.1.3/easel/easel.c:1507: convertable ==> convertible
data/infernal-1.1.3/easel/easel.c:1739: nd ==> and, 2nd
data/infernal-1.1.3/easel/easel.c:1745: nd ==> and, 2nd
data/infernal-1.1.3/easel/easel.c:1747: nd ==> and, 2nd
data/infernal-1.1.3/easel/easel.tex:274: implementated ==> implemented
data/infernal-1.1.3/easel/esl_alphabet.c:284: ND ==> AND, 2ND
data/infernal-1.1.3/easel/esl_alphabet.tex:289: ND ==> AND, 2ND
data/infernal-1.1.3/easel/esl_alphabet.tex:413: parameterizes ==> parametrizes
data/infernal-1.1.3/easel/demotic/infernal_tab2gff.pl:136: formt ==> format
data/infernal-1.1.3/easel/demotic/infernal_tab2gff.pl:152: Thouroughly ==> Thoroughly
data/infernal-1.1.3/easel/demotic/infernal_tab2gff.pl:152: embarassing ==> embarrassing
data/infernal-1.1.3/easel/demotic/demotic_fasta.pm:197: carefull ==> careful, carefully
data/infernal-1.1.3/easel/demotic/examples/example.h2.out:1474: te ==> the, be, we
data/infernal-1.1.3/easel/demotic/examples/example.h2.out:1795: te ==> the, be, we
data/infernal-1.1.3/easel/demotic/examples/example.hmm:6: ALPH ==> ALPHA
data/infernal-1.1.3/easel/demotic/examples/example.hmm:409: ALPH ==> ALPHA
data/infernal-1.1.3/easel/demotic/examples/example.hmm2:6: ALPH ==> ALPHA
data/infernal-1.1.3/easel/demotic/examples/example.hmm2:400: ALPH ==> ALPHA
data/infernal-1.1.3/easel/demotic/examples/example.hmmsearch.out:5064: lke ==> like
data/infernal-1.1.3/easel/demotic/examples/example.hmmsearch.out:10090: lke ==> like
data/infernal-1.1.3/easel/demotic/examples/example.hmmsearch.out:10413: lke ==> like
data/infernal-1.1.3/easel/demotic/examples/example.hmmsearch.out:11268: lke ==> like
data/infernal-1.1.3/easel/demotic/examples/example.hmmsearch.out:12579: lke ==> like
data/infernal-1.1.3/easel/demotic/examples/example.hmmsearch.out:12826: lke ==> like
data/infernal-1.1.3/easel/demotic/examples/example.hmmsearch.out:12845: lke ==> like
data/infernal-1.1.3/easel/demotic/examples/example.hmmsearch.out:13016: lke ==> like
data/infernal-1.1.3/easel/demotic/examples/example.hmmsearch.out:13035: lke ==> like
data/infernal-1.1.3/easel/demotic/examples/example.hmmsearch.out:13111: lke ==> like
data/infernal-1.1.3/easel/demotic/examples/example.hmmsearch.out:13187: lke ==> like
data/infernal-1.1.3/easel/demotic/examples/example.hmmsearch.out:13301: lke ==> like
data/infernal-1.1.3/easel/demotic/examples/example.phmmer.out:290: ist ==> is, it, its, it's, sit, list
data/infernal-1.1.3/easel/demotic/examples/example.phmmer.out:340: ist ==> is, it, its, it's, sit, list
data/infernal-1.1.3/easel/demotic/examples/example.phmmer.out:2952: thiE ==> the, this
data/infernal-1.1.3/easel/demotic/examples/example.phmmer.out:3080: thiE ==> the, this
data/infernal-1.1.3/easel/demotic/examples/example.phmmer.out:3170: ede ==> edge
data/infernal-1.1.3/easel/demotic/examples/example.psiblast.out:110: alph ==> alpha
data/infernal-1.1.3/easel/demotic/examples/example.psiblast.out:190: ALS ==> ALSO
data/infernal-1.1.3/easel/demotic/examples/example.psiblast.out:479: ALS ==> ALSO
data/infernal-1.1.3/easel/demotic/examples/example.psiblast.out:901: ALS ==> ALSO
data/infernal-1.1.3/easel/demotic/examples/example.ssearch.out:204: elemen ==> element
data/infernal-1.1.3/easel/demotic/examples/example.ssearch.out:206: elemen ==> element
data/infernal-1.1.3/easel/demotic/examples/example.ssearch.out:210: elemen ==> element
data/infernal-1.1.3/easel/demotic/examples/example.ssearch.out:211: elemen ==> element
data/infernal-1.1.3/easel/demotic/examples/example.ssearch.out:212: elemen ==> element
data/infernal-1.1.3/easel/demotic/examples/example.ssearch.out:213: elemen ==> element
data/infernal-1.1.3/easel/demotic/examples/example.ssearch.out:214: elemen ==> element
data/infernal-1.1.3/easel/demotic/examples/example.ssearch.out:215: elemen ==> element
data/infernal-1.1.3/easel/demotic/examples/example.ssearch.out:216: elemen ==> element
data/infernal-1.1.3/easel/demotic/examples/example.ssearch.out:217: elemen ==> element
data/infernal-1.1.3/easel/demotic/examples/example.ssearch.out:220: elemen ==> element
data/infernal-1.1.3/easel/demotic/examples/example.ssearch.out:236: elemen ==> element
data/infernal-1.1.3/easel/demotic/examples/example.ssearch.out:240: elemen ==> element
data/infernal-1.1.3/easel/demotic/examples/example.ssearch.out:249: elemen ==> element
data/infernal-1.1.3/easel/demotic/examples/example.ssearch.out:253: elemen ==> element
data/infernal-1.1.3/easel/demotic/examples/example.ssearch.out:263: elemen ==> element
data/infernal-1.1.3/easel/demotic/examples/example.ssearch.out:281: elemen ==> element
data/infernal-1.1.3/easel/demotic/examples/example.ssearch.out:302: elemen ==> element
data/infernal-1.1.3/easel/demotic/examples/example.ssearch.out:317: elemen ==> element
data/infernal-1.1.3/easel/demotic/examples/example.ssearch.out:320: elemen ==> element
data/infernal-1.1.3/easel/demotic/examples/example.ssearch.out:329: elemen ==> element
data/infernal-1.1.3/easel/demotic/examples/example.ssearch.out:336: BA ==> BY, BE
data/infernal-1.1.3/easel/demotic/examples/example.ssearch.out:359: BA ==> BY, BE
data/infernal-1.1.3/easel/demotic/examples/example.sto:222: TE ==> THE, BE, WE
data/infernal-1.1.3/easel/demotic/examples/example.sto:252: TE ==> THE, BE, WE
data/infernal-1.1.3/easel/demotic/examples/example.sto:475: VAS ==> WAS
data/infernal-1.1.3/easel/demotic/examples/example.sto:493: ND ==> AND, 2ND
data/infernal-1.1.3/easel/demotic/examples/example.sto:510: EGE ==> EDGE
data/infernal-1.1.3/easel/demotic/examples/example.sto:520: HEL ==> HELP, HELL, HEAL
data/infernal-1.1.3/easel/demotic/examples/example.sto:531: NED ==> NEED
data/infernal-1.1.3/easel/demotic/examples/example.sto:541: GYLPH ==> GLYPH
data/infernal-1.1.3/easel/demotic/examples/example.wu-blastp.out:204: Pich ==> Pitch
data/infernal-1.1.3/easel/demotic/examples/example.wu-blastp.out:443: Pich ==> Pitch
data/infernal-1.1.3/easel/demotic/examples/example.wu-blastp.out:1193: LKE ==> LIKE
data/infernal-1.1.3/easel/demotic/examples/example.wu-blastp.out:1406: LKE ==> LIKE
data/infernal-1.1.3/easel/demotic/examples/example.wu-blastp.out:2872: PASE ==> PASS, PACE, PARSE
data/infernal-1.1.3/easel/demotic/examples/example.wu-blastp.out:2900: PASE ==> PASS, PACE, PARSE
data/infernal-1.1.3/easel/demotic/examples/example.wu-blastp.out:3452: TE ==> THE, BE, WE
data/infernal-1.1.3/easel/demotic/examples/example.wu-blastp.out:5773: EDE ==> EDGE
data/infernal-1.1.3/easel/demotic/examples/example.wu-blastp.out:5793: EDE ==> EDGE
data/infernal-1.1.3/easel/demotic/examples/example.wu-blastp.out:6319: EDE ==> EDGE
data/infernal-1.1.3/easel/demotic/examples/example.wu-blastp.out:6359: EDE ==> EDGE
data/infernal-1.1.3/easel/demotic/examples/example.wu-blastp.out:6497: EDE ==> EDGE
data/infernal-1.1.3/easel/demotic/examples/example.wu-blastp.out:6995: EDE ==> EDGE
data/infernal-1.1.3/easel/demotic/examples/example-single.fa:297: TYE ==> TYPE, TIE
data/infernal-1.1.3/easel/demotic/examples/example-single.sto:185: VAID ==> VALID, VOID
data/infernal-1.1.3/easel/demotic/examples/example-single.sto:186: VAID ==> VALID, VOID
data/infernal-1.1.3/easel/demotic/examples/example-single.sto:188: VAID ==> VALID, VOID
data/infernal-1.1.3/easel/demotic/examples/example-single.sto:188: LIK ==> LIKE, LICK, LINK
data/infernal-1.1.3/easel/demotic/examples/example-single.sto:194: VAID ==> VALID, VOID
data/infernal-1.1.3/easel/demotic/examples/example-single.sto:195: VAID ==> VALID, VOID
data/infernal-1.1.3/easel/demotic/examples/example-single.sto:220: MYE ==> MAY, MY
data/infernal-1.1.3/easel/demotic/examples/example-single.sto:222: TYE ==> TYPE, TIE
data/infernal-1.1.3/easel/demotic/examples/example-single.sto:247: THA ==> THAN, THAT, THE
data/infernal-1.1.3/easel/demotic/examples/example-single.sto:262: VIE ==> VIA
data/infernal-1.1.3/easel/demotic/examples/example-single.sto:282: FLIE ==> FILE
data/infernal-1.1.3/easel/demotic/examples/example-single.sto:290: VAID ==> VALID, VOID
data/infernal-1.1.3/easel/demotic/examples/example-single.sto:299: ALS ==> ALSO
data/infernal-1.1.3/easel/demotic/examples/example-single.sto:302: VAID ==> VALID, VOID
data/infernal-1.1.3/easel/demotic/examples/example.fasta.out:204: elemen ==> element
data/infernal-1.1.3/easel/demotic/examples/example.fasta.out:208: elemen ==> element
data/infernal-1.1.3/easel/demotic/examples/example.fasta.out:209: elemen ==> element
data/infernal-1.1.3/easel/demotic/examples/example.fasta.out:211: elemen ==> element
data/infernal-1.1.3/easel/demotic/examples/example.fasta.out:212: elemen ==> element
data/infernal-1.1.3/easel/demotic/examples/example.fasta.out:213: elemen ==> element
data/infernal-1.1.3/easel/demotic/examples/example.fasta.out:214: elemen ==> element
data/infernal-1.1.3/easel/demotic/examples/example.fasta.out:215: elemen ==> element
data/infernal-1.1.3/easel/demotic/examples/example.fasta.out:221: elemen ==> element
data/infernal-1.1.3/easel/demotic/examples/example.fasta.out:228: elemen ==> element
data/infernal-1.1.3/easel/demotic/examples/example.fasta.out:232: elemen ==> element
data/infernal-1.1.3/easel/demotic/examples/example.fasta.out:233: elemen ==> element
data/infernal-1.1.3/easel/demotic/examples/example.fasta.out:237: elemen ==> element
data/infernal-1.1.3/easel/demotic/examples/example.fasta.out:243: elemen ==> element
data/infernal-1.1.3/easel/demotic/examples/example.fasta.out:253: elemen ==> element
data/infernal-1.1.3/easel/demotic/examples/example.fasta.out:266: elemen ==> element
data/infernal-1.1.3/easel/demotic/examples/example.fasta.out:268: elemen ==> element
data/infernal-1.1.3/easel/demotic/examples/example.fasta.out:271: elemen ==> element
data/infernal-1.1.3/easel/demotic/examples/example.fasta.out:275: elemen ==> element
data/infernal-1.1.3/easel/demotic/examples/example.fasta.out:279: elemen ==> element
data/infernal-1.1.3/easel/demotic/examples/example.fasta.out:281: BA ==> BY, BE
data/infernal-1.1.3/easel/demotic/examples/example.fasta.out:301: BA ==> BY, BE
data/infernal-1.1.3/easel/demotic/examples/example.fasta.out:302: BA ==> BY, BE
data/infernal-1.1.3/easel/demotic/examples/example.fasta.out:311: elemen ==> element
data/infernal-1.1.3/easel/demotic/examples/example.fasta.out:330: modul ==> module
data/infernal-1.1.3/easel/demotic/examples/example.fasta.out:341: modul ==> module
data/infernal-1.1.3/easel/demotic/examples/example.fasta.out:372: modul ==> module
data/infernal-1.1.3/easel/devkit/autodoc.md:234: crossreference ==> cross-reference
data/infernal-1.1.3/easel/devkit/autodoc.md:236: crossreference ==> cross-reference
data/infernal-1.1.3/easel/documentation/main.tex:566: foramt ==> format
data/infernal-1.1.3/easel/documentation/codestyle.md:885: throrough ==> thorough
data/infernal-1.1.3/easel/documentation/codestyle.tex:102: eslE ==> else
data/infernal-1.1.3/easel/documentation/codestyle.tex:136: implementating ==> implementing
data/infernal-1.1.3/easel/documentation/codestyle.tex:1646: crossreferences ==> cross-references
data/infernal-1.1.3/easel/documentation/codestyle.tex:1650: interpeted ==> interpreted
data/infernal-1.1.3/easel/documentation/codestyle.tex:1713: Crossreferences ==> Cross-references
data/infernal-1.1.3/easel/documentation/codestyle.tex:1719: crossreferences ==> cross-references
data/infernal-1.1.3/easel/documentation/format_ncbi.tex:6: nin ==> inn, min, bin, nine
data/infernal-1.1.3/easel/documentation/format_ncbi.tex:18: nin ==> inn, min, bin, nine
data/infernal-1.1.3/easel/documentation/format_ncbi.tex:158: nin ==> inn, min, bin, nine
data/infernal-1.1.3/easel/documentation/figures/rnaseP-ecoli.eps:49: nd ==> and, 2nd
data/infernal-1.1.3/easel/documentation/figures/rnaseP-ecoli.eps:225: nd ==> and, 2nd
data/infernal-1.1.3/easel/documentation/figures/rnaseP-ecoli.eps:226: nd ==> and, 2nd
data/infernal-1.1.3/easel/documentation/figures/rnaseP-ecoli.eps:260: nd ==> and, 2nd
data/infernal-1.1.3/easel/documentation/figures/rnaseP-ecoli.eps:261: nd ==> and, 2nd
data/infernal-1.1.3/easel/documentation/figures/rnaseP-ecoli.eps:390: nd ==> and, 2nd
data/infernal-1.1.3/easel/documentation/figures/rnaseP-ecoli.eps:396: nd ==> and, 2nd
data/infernal-1.1.3/easel/documentation/figures/rnaseP-ecoli.eps:397: nd ==> and, 2nd
data/infernal-1.1.3/easel/documentation/figures/rnaseP-ecoli.eps:405: nd ==> and, 2nd
data/infernal-1.1.3/easel/documentation/figures/rnaseP-ecoli.eps:406: nd ==> and, 2nd
data/infernal-1.1.3/easel/documentation/figures/rnaseP-ecoli.eps:407: nd ==> and, 2nd
data/infernal-1.1.3/easel/documentation/figures/rnaseP-ecoli.eps:408: nd ==> and, 2nd
data/infernal-1.1.3/easel/documentation/figures/rnaseP-ecoli.eps:409: nd ==> and, 2nd
data/infernal-1.1.3/easel/documentation/figures/rnaseP-ecoli.eps:410: nd ==> and, 2nd
data/infernal-1.1.3/easel/documentation/figures/rnaseP-ecoli.eps:411: nd ==> and, 2nd
data/infernal-1.1.3/easel/documentation/figures/rnaseP-ecoli.eps:412: nd ==> and, 2nd
data/infernal-1.1.3/easel/documentation/figures/rnaseP-ecoli.eps:413: nd ==> and, 2nd
data/infernal-1.1.3/easel/documentation/figures/rnaseP-ecoli.eps:414: nd ==> and, 2nd
data/infernal-1.1.3/easel/documentation/figures/rnaseP-ecoli.eps:415: nd ==> and, 2nd
data/infernal-1.1.3/easel/documentation/figures/rnaseP-ecoli.eps:416: nd ==> and, 2nd
data/infernal-1.1.3/easel/documentation/figures/rnaseP-ecoli.eps:417: nd ==> and, 2nd
data/infernal-1.1.3/easel/documentation/figures/rnaseP-ecoli.eps:418: nd ==> and, 2nd
data/infernal-1.1.3/easel/documentation/figures/rnaseP-ecoli.eps:419: nd ==> and, 2nd
data/infernal-1.1.3/easel/documentation/figures/rnaseP-ecoli.eps:420: nd ==> and, 2nd
data/infernal-1.1.3/easel/documentation/figures/rnaseP-ecoli.eps:421: nd ==> and, 2nd
data/infernal-1.1.3/easel/documentation/figures/rnaseP-ecoli.eps:424: nd ==> and, 2nd
data/infernal-1.1.3/easel/documentation/figures/rnaseP-ecoli.eps:429: nd ==> and, 2nd
data/infernal-1.1.3/easel/documentation/figures/rnaseP-ecoli.eps:430: nd ==> and, 2nd
data/infernal-1.1.3/easel/documentation/figures/rnaseP-ecoli.eps:431: nd ==> and, 2nd
data/infernal-1.1.3/easel/documentation/figures/rnaseP-ecoli.eps:432: nd ==> and, 2nd
data/infernal-1.1.3/easel/documentation/figures/rnaseP-ecoli.eps:434: nd ==> and, 2nd
data/infernal-1.1.3/easel/documentation/figures/rnaseP-ecoli.eps:435: nd ==> and, 2nd
data/infernal-1.1.3/easel/documentation/figures/rnaseP-ecoli.eps:438: nd ==> and, 2nd
data/infernal-1.1.3/easel/documentation/figures/rnaseP-ecoli.eps:439: nd ==> and, 2nd
data/infernal-1.1.3/easel/documentation/figures/rnaseP-ecoli.eps:440: nd ==> and, 2nd
data/infernal-1.1.3/easel/documentation/figures/rnaseP-ecoli.eps:443: nd ==> and, 2nd
data/infernal-1.1.3/easel/documentation/figures/rnaseP-ecoli.eps:2442: nd ==> and, 2nd
data/infernal-1.1.3/easel/documentation/figures/rnaseP-ecoli.eps:2445: nd ==> and, 2nd
data/infernal-1.1.3/easel/documentation/figures/rnaseP-ecoli.eps:2446: nd ==> and, 2nd
data/infernal-1.1.3/easel/documentation/figures/rnaseP-ecoli.eps:2448: nd ==> and, 2nd
data/infernal-1.1.3/easel/documentation/figures/rnaseP-ecoli.eps:2449: nd ==> and, 2nd
data/infernal-1.1.3/easel/documentation/figures/rnaseP-ecoli.eps:2457: nd ==> and, 2nd
data/infernal-1.1.3/easel/documentation/figures/rnaseP-ecoli.eps:2458: nd ==> and, 2nd
data/infernal-1.1.3/easel/documentation/figures/rnaseP-ecoli.eps:2459: nd ==> and, 2nd
data/infernal-1.1.3/easel/documentation/figures/rnaseP-ecoli.eps:2460: nd ==> and, 2nd
data/infernal-1.1.3/easel/documentation/figures/rnaseP-ecoli.eps:2461: nd ==> and, 2nd
data/infernal-1.1.3/easel/documentation/figures/rnaseP-ecoli.eps:2462: nd ==> and, 2nd
data/infernal-1.1.3/easel/documentation/figures/rnaseP-ecoli.eps:2463: nd ==> and, 2nd
data/infernal-1.1.3/easel/documentation/figures/rnaseP-ecoli.eps:2464: nd ==> and, 2nd
data/infernal-1.1.3/easel/documentation/figures/rnaseP-ecoli.eps:2465: nd ==> and, 2nd
data/infernal-1.1.3/easel/documentation/figures/rnaseP-ecoli.eps:2466: nd ==> and, 2nd
data/infernal-1.1.3/easel/documentation/figures/rnaseP-ecoli.eps:2467: nd ==> and, 2nd
data/infernal-1.1.3/easel/documentation/figures/rnaseP-ecoli.eps:2468: nd ==> and, 2nd
data/infernal-1.1.3/easel/documentation/figures/rnaseP-ecoli.eps:2469: nd ==> and, 2nd
data/infernal-1.1.3/easel/documentation/figures/rnaseP-ecoli.eps:2470: nd ==> and, 2nd
data/infernal-1.1.3/easel/documentation/figures/rnaseP-ecoli.eps:2471: nd ==> and, 2nd
data/infernal-1.1.3/easel/documentation/figures/rnaseP-ecoli.eps:2472: nd ==> and, 2nd
data/infernal-1.1.3/easel/documentation/figures/rnaseP-ecoli.eps:2473: nd ==> and, 2nd
data/infernal-1.1.3/easel/documentation/figures/rnaseP-ecoli.eps:3448: ND ==> AND, 2ND
data/infernal-1.1.3/easel/documentation/figures/rnaseP-ecoli.eps:3453: ND ==> AND, 2ND
data/infernal-1.1.3/easel/documentation/figures/rnaseP-ecoli.eps:3458: ND ==> AND, 2ND
data/infernal-1.1.3/easel/documentation/figures/rnaseP-ecoli.eps:3496: ND ==> AND, 2ND
data/infernal-1.1.3/easel/documentation/figures/rnaseP-ecoli.eps:3541: ND ==> AND, 2ND
data/infernal-1.1.3/easel/documentation/figures/rnaseP-ecoli.eps:3597: ND ==> AND, 2ND
data/infernal-1.1.3/easel/documentation/figures/rnaseP-ecoli.eps:5092: ND ==> AND, 2ND
data/infernal-1.1.3/easel/documentation/figures/rnaseP-ecoli.eps:5097: ND ==> AND, 2ND
data/infernal-1.1.3/easel/documentation/figures/rnaseP-ecoli.eps:5104: ND ==> AND, 2ND
data/infernal-1.1.3/easel/documentation/figures/rnaseP-ecoli.eps:5107: ND ==> AND, 2ND
data/infernal-1.1.3/easel/documentation/figures/rnaseP-ecoli.eps:5273: ND ==> AND, 2ND
data/infernal-1.1.3/easel/documentation/figures/rnaseP-ecoli.eps:5383: ND ==> AND, 2ND
data/infernal-1.1.3/easel/documentation/figures/rnaseP-ecoli.eps:5388: ND ==> AND, 2ND
data/infernal-1.1.3/easel/documentation/figures/rnaseP-ecoli.eps:5392: ND ==> AND, 2ND
data/infernal-1.1.3/easel/documentation/figures/rnaseP-ecoli.eps:5398: ND ==> AND, 2ND
data/infernal-1.1.3/easel/documentation/figures/rnaseP-ecoli.eps:5407: ND ==> AND, 2ND
data/infernal-1.1.3/easel/documentation/figures/rnaseP-ecoli.eps:5413: ND ==> AND, 2ND
data/infernal-1.1.3/easel/documentation/figures/rnaseP-ecoli.eps:5458: ND ==> AND, 2ND
data/infernal-1.1.3/easel/documentation/figures/rnaseP-ecoli.eps:5465: ND ==> AND, 2ND
data/infernal-1.1.3/easel/documentation/figures/rnaseP-ecoli.eps:5504: ND ==> AND, 2ND
data/infernal-1.1.3/easel/documentation/figures/rnaseP-ecoli.eps:5512: ND ==> AND, 2ND
data/infernal-1.1.3/easel/documentation/figures/rnaseP-ecoli.eps:5516: ND ==> AND, 2ND
data/infernal-1.1.3/easel/documentation/figures/rnaseP-ecoli.eps:5526: ND ==> AND, 2ND
data/infernal-1.1.3/easel/documentation/figures/rnaseP-ecoli.eps:5534: ND ==> AND, 2ND
data/infernal-1.1.3/easel/documentation/figures/rnaseP-ecoli.eps:5643: ND ==> AND, 2ND
data/infernal-1.1.3/easel/documentation/figures/rnaseP-ecoli.eps:5647: ND ==> AND, 2ND
data/infernal-1.1.3/easel/documentation/figures/rnaseP-ecoli.eps:5651: ND ==> AND, 2ND
data/infernal-1.1.3/easel/documentation/figures/rnaseP-ecoli.eps:5655: ND ==> AND, 2ND
data/infernal-1.1.3/easel/documentation/figures/rnaseP-ecoli.eps:5657: ND ==> AND, 2ND
data/infernal-1.1.3/easel/documentation/figures/rnaseP-ecoli.eps:5660: ND ==> AND, 2ND
data/infernal-1.1.3/easel/documentation/figures/rnaseP-ecoli.eps:5662: ND ==> AND, 2ND
data/infernal-1.1.3/easel/documentation/figures/rnaseP-ecoli.eps:5668: ND ==> AND, 2ND
data/infernal-1.1.3/easel/documentation/figures/rnaseP-ecoli.eps:5672: ND ==> AND, 2ND
data/infernal-1.1.3/easel/documentation/figures/rnaseP-ecoli.eps:5678: ND ==> AND, 2ND
data/infernal-1.1.3/easel/documentation/figures/rnaseP-ecoli.eps:5686: ND ==> AND, 2ND
data/infernal-1.1.3/easel/documentation/figures/rnaseP-ecoli.eps:5690: ND ==> AND, 2ND
data/infernal-1.1.3/easel/documentation/figures/rnaseP-ecoli.eps:5700: ND ==> AND, 2ND
data/infernal-1.1.3/easel/documentation/figures/rnaseP-ecoli.eps:5708: ND ==> AND, 2ND
data/infernal-1.1.3/easel/documentation/figures/rnaseP-ecoli.eps:5712: ND ==> AND, 2ND
data/infernal-1.1.3/easel/documentation/figures/rnaseP-ecoli.eps:5717: ND ==> AND, 2ND
data/infernal-1.1.3/easel/documentation/figures/rnaseP-ecoli.eps:5725: ND ==> AND, 2ND
data/infernal-1.1.3/easel/documentation/figures/rnaseP-ecoli.eps:5731: ND ==> AND, 2ND
data/infernal-1.1.3/easel/documentation/figures/rnaseP-ecoli.eps:5736: ND ==> AND, 2ND
data/infernal-1.1.3/easel/documentation/figures/rnaseP-ecoli.eps:5739: ND ==> AND, 2ND
data/infernal-1.1.3/easel/documentation/figures/rnaseP-ecoli.eps:5744: ND ==> AND, 2ND
data/infernal-1.1.3/easel/documentation/figures/rnaseP-ecoli.eps:5749: ND ==> AND, 2ND
data/infernal-1.1.3/easel/documentation/figures/rnaseP-ecoli.eps:5753: ND ==> AND, 2ND
data/infernal-1.1.3/easel/documentation/figures/rnaseP-ecoli.eps:5759: ND ==> AND, 2ND
data/infernal-1.1.3/easel/documentation/figures/rnaseP-ecoli.eps:5765: ND ==> AND, 2ND
data/infernal-1.1.3/easel/documentation/figures/rnaseP-ecoli.eps:5772: ND ==> AND, 2ND
data/infernal-1.1.3/easel/documentation/figures/rnaseP-ecoli.eps:5776: ND ==> AND, 2ND
data/infernal-1.1.3/easel/documentation/figures/rnaseP-ecoli.eps:5782: ND ==> AND, 2ND
data/infernal-1.1.3/easel/documentation/figures/rnaseP-ecoli.eps:5790: ND ==> AND, 2ND
data/infernal-1.1.3/easel/documentation/figures/rnaseP-ecoli.eps:5796: ND ==> AND, 2ND
data/infernal-1.1.3/easel/documentation/figures/rnaseP-ecoli.eps:5802: ND ==> AND, 2ND
data/infernal-1.1.3/easel/documentation/figures/rnaseP-ecoli.eps:5809: ND ==> AND, 2ND
data/infernal-1.1.3/easel/documentation/figures/rnaseP-ecoli.eps:5815: ND ==> AND, 2ND
data/infernal-1.1.3/easel/documentation/figures/rnaseP-ecoli.eps:5822: ND ==> AND, 2ND
data/infernal-1.1.3/easel/documentation/figures/rnaseP-ecoli.eps:5826: ND ==> AND, 2ND
data/infernal-1.1.3/easel/documentation/figures/rnaseP-ecoli.eps:5829: ND ==> AND, 2ND
data/infernal-1.1.3/easel/documentation/figures/rnaseP-ecoli.eps:5837: ND ==> AND, 2ND
data/infernal-1.1.3/easel/documentation/figures/rnaseP-ecoli.eps:5843: ND ==> AND, 2ND
data/infernal-1.1.3/easel/documentation/figures/rnaseP-ecoli.eps:5849: ND ==> AND, 2ND
data/infernal-1.1.3/easel/documentation/figures/rnaseP-ecoli.eps:5856: ND ==> AND, 2ND
data/infernal-1.1.3/easel/documentation/figures/rnaseP-ecoli.eps:5862: ND ==> AND, 2ND
data/infernal-1.1.3/easel/documentation/figures/rnaseP-ecoli.eps:5867: ND ==> AND, 2ND
data/infernal-1.1.3/easel/documentation/figures/rnaseP-ecoli.eps:5874: ND ==> AND, 2ND
data/infernal-1.1.3/easel/documentation/figures/rnaseP-ecoli.eps:5878: ND ==> AND, 2ND
data/infernal-1.1.3/easel/documentation/figures/rnaseP-ecoli.eps:5884: ND ==> AND, 2ND
data/infernal-1.1.3/easel/documentation/figures/rnaseP-ecoli.eps:5890: ND ==> AND, 2ND
data/infernal-1.1.3/easel/documentation/figures/rnaseP-ecoli.eps:5896: ND ==> AND, 2ND
data/infernal-1.1.3/easel/documentation/figures/rnaseP-ecoli.eps:5983: ND ==> AND, 2ND
data/infernal-1.1.3/easel/documentation/figures/rnaseP-ecoli.eps:5988: ND ==> AND, 2ND
data/infernal-1.1.3/easel/documentation/figures/rnaseP-ecoli.eps:5990: ND ==> AND, 2ND
data/infernal-1.1.3/easel/documentation/figures/rnaseP-ecoli.eps:5996: ND ==> AND, 2ND
data/infernal-1.1.3/easel/documentation/figures/rnaseP-ecoli.eps:6004: ND ==> AND, 2ND
data/infernal-1.1.3/easel/documentation/figures/rnaseP-ecoli.eps:6010: ND ==> AND, 2ND
data/infernal-1.1.3/easel/documentation/figures/rnaseP-ecoli.eps:6016: ND ==> AND, 2ND
data/infernal-1.1.3/easel/documentation/figures/rnaseP-ecoli.eps:6022: ND ==> AND, 2ND
data/infernal-1.1.3/easel/documentation/figures/rnaseP-ecoli.eps:6027: ND ==> AND, 2ND
data/infernal-1.1.3/easel/documentation/figures/rnaseP-ecoli.eps:6031: ND ==> AND, 2ND
data/infernal-1.1.3/easel/documentation/figures/rnaseP-ecoli.eps:6037: ND ==> AND, 2ND
data/infernal-1.1.3/easel/documentation/figures/rnaseP-ecoli.eps:6043: ND ==> AND, 2ND
data/infernal-1.1.3/easel/documentation/figures/rnaseP-ecoli.eps:6050: ND ==> AND, 2ND
data/infernal-1.1.3/easel/documentation/figures/rnaseP-ecoli.eps:6054: ND ==> AND, 2ND
data/infernal-1.1.3/easel/documentation/figures/rnaseP-ecoli.eps:6175: tE ==> the, be, we
data/infernal-1.1.3/easel/documentation/figures/rnaseP-ecoli.eps:6192: Fo ==> Of, for
data/infernal-1.1.3/easel/documentation/figures/rnaseP-ecoli.eps:6195: teH ==> the
data/infernal-1.1.3/easel/documentation/figures/rnaseP-ecoli.eps:6233: nin ==> inn, min, bin, nine
data/infernal-1.1.3/easel/documentation/figures/rnaseP-ecoli.eps:6248: Nd ==> And, 2nd
data/infernal-1.1.3/easel/documentation/figures/rnaseP-ecoli.eps:6272: FO ==> OF, FOR
data/infernal-1.1.3/easel/documentation/figures/rnaseP-ecoli.eps:6302: ba ==> by, be
data/infernal-1.1.3/easel/documentation/figures/rnaseP-ecoli.eps:6355: DuM ==> dumb
data/infernal-1.1.3/easel/documentation/figures/rnaseP-ecoli.eps:6365: fO ==> of, for
data/infernal-1.1.3/easel/documentation/figures/rnaseP-ecoli.eps:6384: HsI ==> his
data/infernal-1.1.3/easel/documentation/figures/rnaseP-ecoli.eps:6391: Nd ==> And, 2nd
data/infernal-1.1.3/easel/documentation/figures/rnaseP-ecoli.eps:6479: te ==> the, be, we
data/infernal-1.1.3/easel/documentation/figures/rnaseP-ecoli.eps:6479: ojE ==> one
data/infernal-1.1.3/easel/documentation/figures/rnaseP-ecoli.eps:6514: ue ==> use, due
data/infernal-1.1.3/easel/documentation/figures/rnaseP-ecoli.eps:6517: ue ==> use, due
data/infernal-1.1.3/easel/documentation/figures/rnaseP-ecoli.eps:6531: tE ==> the, be, we
data/infernal-1.1.3/easel/documentation/figures/rnaseP-ecoli.eps:6535: Ot ==> To, of, or
data/infernal-1.1.3/easel/documentation/figures/rnaseP-ecoli.eps:6543: Nd ==> And, 2nd
data/infernal-1.1.3/easel/documentation/figures/rnaseP-ecoli.eps:6555: ot ==> to, of, or
data/infernal-1.1.3/easel/documentation/figures/rnaseP-ecoli.eps:6605: Nd ==> And, 2nd
data/infernal-1.1.3/easel/documentation/figures/rnaseP-ecoli.eps:6628: bA ==> by, be
data/infernal-1.1.3/easel/documentation/figures/rnaseP-ecoli.eps:6642: coO ==> coup
data/infernal-1.1.3/easel/documentation/figures/rnaseP-ecoli.eps:6672: fo ==> of, for
data/infernal-1.1.3/easel/documentation/figures/rnaseP-ecoli.eps:6720: ois ==> is
data/infernal-1.1.3/easel/documentation/figures/rnaseP-ecoli.eps:6728: te ==> the, be, we
data/infernal-1.1.3/easel/documentation/figures/rnaseP-ecoli.eps:6742: ND ==> AND, 2ND
data/infernal-1.1.3/easel/documentation/figures/rnaseP-ecoli.eps:6770: OND ==> ONE
data/infernal-1.1.3/easel/documentation/figures/rnaseP-ecoli.eps:6806: uE ==> use, due
data/infernal-1.1.3/easel/documentation/figures/rnaseP-ecoli.eps:6830: TE ==> THE, BE, WE
data/infernal-1.1.3/easel/documentation/figures/rnaseP-ecoli.eps:6834: nIn ==> inn, min, bin, nine
data/infernal-1.1.3/easel/documentation/figures/rnaseP-ecoli.eps:6866: fO ==> of, for
data/infernal-1.1.3/easel/documentation/figures/rnaseP-ecoli.eps:6872: nd ==> and, 2nd
data/infernal-1.1.3/easel/documentation/figures/rnaseP-ecoli.eps:6883: FO ==> OF, FOR
data/infernal-1.1.3/easel/documentation/figures/rnaseP-ecoli.eps:6890: te ==> the, be, we
data/infernal-1.1.3/easel/documentation/figures/rnaseP-ecoli.eps:6920: UE ==> USE, DUE
data/infernal-1.1.3/easel/documentation/figures/rnaseP-ecoli.eps:6931: Nd ==> And, 2nd
data/infernal-1.1.3/easel/documentation/figures/rnaseP-ecoli.eps:7027: sEh ==> she
data/infernal-1.1.3/easel/documentation/figures/rnaseP-ecoli.eps:7066: nd ==> and, 2nd
data/infernal-1.1.3/easel/documentation/figures/rnaseP-ecoli.eps:7086: bA ==> by, be
data/infernal-1.1.3/easel/documentation/figures/rnaseP-ecoli.eps:7108: FO ==> OF, FOR
data/infernal-1.1.3/easel/documentation/figures/rnaseP-ecoli.eps:7108: UE ==> USE, DUE
data/infernal-1.1.3/easel/documentation/figures/rnaseP-ecoli.eps:7202: liK ==> like, lick, link
data/infernal-1.1.3/easel/documentation/figures/rnaseP-ecoli.eps:7248: OlY ==> only
data/infernal-1.1.3/easel/documentation/figures/rnaseP-ecoli.eps:7296: fO ==> of, for
data/infernal-1.1.3/easel/documentation/figures/rnaseP-ecoli.eps:7329: oIS ==> is
data/infernal-1.1.3/easel/documentation/figures/rnaseP-ecoli.eps:7344: Fo ==> Of, for
data/infernal-1.1.3/easel/documentation/figures/rnaseP-ecoli.eps:7356: FO ==> OF, FOR
data/infernal-1.1.3/easel/documentation/figures/rnaseP-ecoli.eps:7362: eGe ==> edge
data/infernal-1.1.3/easel/documentation/figures/rnaseP-ecoli.eps:7368: ND ==> AND, 2ND
data/infernal-1.1.3/easel/documentation/figures/rnaseP-ecoli.eps:7376: oT ==> to, of, or
data/infernal-1.1.3/easel/documentation/figures/rnaseP-ecoli.eps:7405: YUO ==> YOU
data/infernal-1.1.3/easel/documentation/figures/rnaseP-ecoli.eps:7412: OnY ==> only
data/infernal-1.1.3/easel/documentation/figures/rnaseP-ecoli.eps:7424: fro ==> for, from
data/infernal-1.1.3/easel/documentation/figures/rnaseP-ecoli.eps:7427: Te ==> The, be, we
data/infernal-1.1.3/easel/documentation/figures/rnaseP-ecoli.eps:7451: te ==> the, be, we
data/infernal-1.1.3/easel/documentation/figures/rnaseP-ecoli.eps:7451: WaN ==> want
data/infernal-1.1.3/easel/documentation/figures/rnaseP-ecoli.eps:7574: UE ==> USE, DUE
data/infernal-1.1.3/easel/documentation/figures/rnaseP-ecoli.eps:7604: OT ==> TO, OF, OR
data/infernal-1.1.3/easel/documentation/figures/rnaseP-ecoli.eps:7636: gIR ==> git
data/infernal-1.1.3/easel/documentation/figures/rnaseP-ecoli.eps:7643: OT ==> TO, OF, OR
data/infernal-1.1.3/easel/documentation/figures/rnaseP-ecoli.eps:7686: fO ==> of, for
data/infernal-1.1.3/easel/documentation/figures/rnaseP-ecoli.eps:7688: thme ==> them
data/infernal-1.1.3/easel/documentation/figures/rnaseP-ecoli.eps:7692: Ue ==> Use, due
data/infernal-1.1.3/easel/documentation/figures/rnaseP-ecoli.eps:7714: oNl ==> only
data/infernal-1.1.3/easel/documentation/figures/rnaseP-ecoli.eps:7721: uE ==> use, due
data/infernal-1.1.3/easel/documentation/figures/rnaseP-ecoli.eps:7770: nd ==> and, 2nd
data/infernal-1.1.3/easel/documentation/figures/rnaseP-ecoli.eps:7828: FO ==> OF, FOR
data/infernal-1.1.3/easel/documentation/figures/rnaseP-ecoli.eps:7897: OnY ==> only
data/infernal-1.1.3/easel/documentation/figures/rnaseP-ecoli.eps:7902: Te ==> The, be, we
data/infernal-1.1.3/easel/documentation/figures/rnaseP-ecoli.eps:7924: UE ==> USE, DUE
data/infernal-1.1.3/easel/documentation/figures/rnaseP-ecoli.eps:7933: Ot ==> To, of, or
data/infernal-1.1.3/easel/documentation/figures/rnaseP-ecoli.eps:7970: Ue ==> Use, due
data/infernal-1.1.3/easel/documentation/figures/rnaseP-ecoli.eps:7986: Fo ==> Of, for
data/infernal-1.1.3/easel/documentation/figures/rnaseP-ecoli.eps:8009: te ==> the, be, we
data/infernal-1.1.3/easel/documentation/figures/rnaseP-ecoli.eps:8044: bA ==> by, be
data/infernal-1.1.3/easel/documentation/figures/rnaseP-ecoli.eps:8091: kNO ==> know
data/infernal-1.1.3/easel/documentation/figures/rnaseP-ecoli.eps:8099: bA ==> by, be
data/infernal-1.1.3/easel/documentation/figures/rnaseP-ecoli.eps:8136: FoT ==> for, fit, dot, rot, cot, got, tot, fog
data/infernal-1.1.3/easel/documentation/figures/rnaseP-ecoli.eps:8138: TE ==> THE, BE, WE
data/infernal-1.1.3/easel/documentation/figures/rnaseP-ecoli.eps:8175: Tha ==> Than, that, the
data/infernal-1.1.3/easel/documentation/figures/rnaseP-ecoli.eps:8193: ba ==> by, be
data/infernal-1.1.3/easel/documentation/figures/rnaseP-ecoli.eps:8204: FO ==> OF, FOR
data/infernal-1.1.3/easel/documentation/figures/rnaseP-ecoli.eps:8249: tE ==> the, be, we
data/infernal-1.1.3/easel/documentation/figures/rnaseP-ecoli.eps:8275: Ot ==> To, of, or
data/infernal-1.1.3/easel/documentation/figures/rnaseP-ecoli.eps:8277: nd ==> and, 2nd
data/infernal-1.1.3/easel/documentation/figures/rnaseP-ecoli.eps:8317: Ba ==> By, be
data/infernal-1.1.3/easel/documentation/figures/rnaseP-ecoli.eps:8324: Ba ==> By, be
data/infernal-1.1.3/easel/documentation/figures/rnaseP-ecoli.eps:8368: uE ==> use, due
data/infernal-1.1.3/easel/documentation/figures/rnaseP-ecoli.eps:8405: TE ==> THE, BE, WE
data/infernal-1.1.3/easel/documentation/figures/rnaseP-ecoli.eps:8423: ot ==> to, of, or
data/infernal-1.1.3/easel/documentation/figures/rnaseP-ecoli.eps:8428: TRE ==> TREE
data/infernal-1.1.3/easel/documentation/figures/rnaseP-ecoli.eps:8461: ue ==> use, due
data/infernal-1.1.3/easel/documentation/figures/rnaseP-ecoli.eps:8478: kET ==> kept
data/infernal-1.1.3/easel/documentation/figures/rnaseP-ecoli.eps:8500: fo ==> of, for
data/infernal-1.1.3/easel/documentation/figures/rnaseP-ecoli.eps:8523: Te ==> The, be, we
data/infernal-1.1.3/easel/documentation/figures/rnaseP-ecoli.eps:8535: BA ==> BY, BE
data/infernal-1.1.3/easel/documentation/figures/rnaseP-ecoli.eps:8568: fo ==> of, for
data/infernal-1.1.3/easel/documentation/figures/rnaseP-ecoli.eps:8630: OT ==> TO, OF, OR
data/infernal-1.1.3/easel/documentation/figures/rnaseP-ecoli.eps:8749: bA ==> by, be
data/infernal-1.1.3/easel/documentation/figures/rnaseP-ecoli.eps:8783: oT ==> to, of, or
data/infernal-1.1.3/easel/documentation/figures/rnaseP-ecoli.eps:8858: AKS ==> ASK
data/infernal-1.1.3/easel/documentation/figures/rnaseP-ecoli.eps:8887: FEEK ==> FEEL
data/infernal-1.1.3/easel/documentation/figures/rnaseP-ecoli.eps:8892: Ue ==> Use, due
data/infernal-1.1.3/easel/documentation/figures/rnaseP-ecoli.eps:8927: ba ==> by, be
data/infernal-1.1.3/easel/documentation/figures/rnaseP-ecoli.eps:8928: Nd ==> And, 2nd
data/infernal-1.1.3/easel/documentation/figures/rnaseP-ecoli.eps:9018: bA ==> by, be
data/infernal-1.1.3/easel/documentation/figures/rnaseP-ecoli.eps:9026: tE ==> the, be, we
data/infernal-1.1.3/easel/documentation/figures/rnaseP-ecoli.eps:9079: uE ==> use, due
data/infernal-1.1.3/easel/documentation/figures/rnaseP-ecoli.eps:9104: uE ==> use, due
data/infernal-1.1.3/easel/documentation/figures/rnaseP-ecoli.eps:9115: tE ==> the, be, we
data/infernal-1.1.3/easel/documentation/figures/rnaseP-ecoli.eps:9154: ViE ==> via
data/infernal-1.1.3/easel/documentation/figures/rnaseP-ecoli.eps:9177: tE ==> the, be, we
data/infernal-1.1.3/easel/documentation/figures/rnaseP-ecoli.eps:9181: Ba ==> By, be
data/infernal-1.1.3/easel/documentation/figures/rnaseP-ecoli.eps:9249: fO ==> of, for
data/infernal-1.1.3/easel/documentation/figures/rnaseP-ecoli.eps:9275: fo ==> of, for
data/infernal-1.1.3/easel/documentation/figures/rnaseP-ecoli.eps:9283: grop ==> group, drop
data/infernal-1.1.3/easel/documentation/figures/rnaseP-ecoli.eps:9346: Hda ==> Had
data/infernal-1.1.3/easel/documentation/figures/rnaseP-ecoli.eps:9370: Fro ==> For, from
data/infernal-1.1.3/easel/documentation/figures/rnaseP-ecoli.eps:9395: bA ==> by, be
data/infernal-1.1.3/easel/documentation/figures/rnaseP-ecoli.eps:9476: Ths ==> The, this
data/infernal-1.1.3/easel/documentation/figures/rnaseP-ecoli.eps:9526: WIT ==> WITH
data/infernal-1.1.3/easel/documentation/figures/rnaseP-ecoli.eps:9566: oT ==> to, of, or
data/infernal-1.1.3/easel/documentation/figures/rnaseP-ecoli.eps:9572: coO ==> coup
data/infernal-1.1.3/easel/documentation/figures/rnaseP-ecoli.eps:9579: BA ==> BY, BE
data/infernal-1.1.3/easel/documentation/figures/rnaseP-ecoli.eps:9653: BA ==> BY, BE
data/infernal-1.1.3/easel/documentation/figures/rnaseP-ecoli.eps:9667: nd ==> and, 2nd
data/infernal-1.1.3/easel/documentation/figures/rnaseP-ecoli.eps:9688: Nin ==> Inn, min, bin, nine
data/infernal-1.1.3/easel/documentation/figures/rnaseP-ecoli.eps:9761: Noo ==> No
data/infernal-1.1.3/easel/documentation/figures/rnaseP-ecoli.eps:9793: TE ==> THE, BE, WE
data/infernal-1.1.3/easel/documentation/figures/rnaseP-ecoli.eps:9891: oT ==> to, of, or
data/infernal-1.1.3/easel/documentation/figures/rnaseP-ecoli.eps:9914: fO ==> of, for
data/infernal-1.1.3/easel/documentation/figures/rnaseP-ecoli.eps:9921: oT ==> to, of, or
data/infernal-1.1.3/easel/documentation/figures/rnaseP-ecoli.eps:9923: Fo ==> Of, for
data/infernal-1.1.3/easel/documentation/figures/rnaseP-ecoli.eps:9926: FO ==> OF, FOR
data/infernal-1.1.3/easel/documentation/figures/rnaseP-ecoli.eps:9970: Ba ==> By, be
data/infernal-1.1.3/easel/documentation/figures/rnaseP-ecoli.eps:9979: YAu ==> you, yaw
data/infernal-1.1.3/easel/documentation/figures/rnaseP-ecoli.eps:10040: SisE ==> size, sisal
data/infernal-1.1.3/easel/documentation/figures/rnaseP-ecoli.eps:10070: fWe ==> few
data/infernal-1.1.3/easel/documentation/figures/rnaseP-ecoli.eps:10090: TYE ==> TYPE, TIE
data/infernal-1.1.3/easel/documentation/figures/rnaseP-ecoli.eps:10093: WqS ==> was
data/infernal-1.1.3/easel/documentation/figures/rnaseP-ecoli.eps:10113: BA ==> BY, BE
data/infernal-1.1.3/easel/documentation/figures/rnaseP-ecoli.eps:10128: mOr ==> more
data/infernal-1.1.3/easel/documentation/figures/rnaseP-ecoli.eps:10203: OT ==> TO, OF, OR
data/infernal-1.1.3/easel/documentation/figures/rnaseP-ecoli.eps:10206: alO ==> also
data/infernal-1.1.3/easel/documentation/figures/rnaseP-ecoli.eps:10215: TE ==> THE, BE, WE
data/infernal-1.1.3/easel/documentation/figures/rnaseP-ecoli.eps:10232: saV ==> save
data/infernal-1.1.3/easel/documentation/figures/rnaseP-ecoli.eps:10238: THA ==> THAN, THAT, THE
data/infernal-1.1.3/easel/documentation/figures/rnaseP-ecoli.eps:10265: uE ==> use, due
data/infernal-1.1.3/easel/documentation/figures/rnaseP-ecoli.eps:10275: TE ==> THE, BE, WE
data/infernal-1.1.3/easel/documentation/figures/rnaseP-ecoli.eps:10341: ist ==> is, it, its, it's, sit, list
data/infernal-1.1.3/easel/documentation/figures/rnaseP-ecoli.eps:10372: ND ==> AND, 2ND
data/infernal-1.1.3/easel/documentation/figures/rnaseP-ecoli.eps:10397: Te ==> The, be, we
data/infernal-1.1.3/easel/documentation/figures/rnaseP-ecoli.eps:10502: hArT ==> heart, harm
data/infernal-1.1.3/easel/documentation/figures/rnaseP-ecoli.eps:10506: oT ==> to, of, or
data/infernal-1.1.3/easel/documentation/figures/rnaseP-ecoli.eps:10512: Ue ==> Use, due
data/infernal-1.1.3/easel/documentation/figures/rnaseP-ecoli.eps:10522: oJe ==> one
data/infernal-1.1.3/easel/documentation/figures/rnaseP-ecoli.eps:10552: TE ==> THE, BE, WE
data/infernal-1.1.3/easel/documentation/figures/rnaseP-ecoli.eps:10554: ot ==> to, of, or
data/infernal-1.1.3/easel/documentation/figures/rnaseP-ecoli.eps:10667: oT ==> to, of, or
data/infernal-1.1.3/easel/documentation/figures/rnaseP-ecoli.eps:10709: Ons ==> Owns
data/infernal-1.1.3/easel/documentation/figures/rnaseP-ecoli.eps:10722: Yuo ==> You
data/infernal-1.1.3/easel/documentation/figures/rnaseP-ecoli.eps:10739: ba ==> by, be
data/infernal-1.1.3/easel/documentation/figures/rnaseP-ecoli.eps:10761: tEH ==> the
data/infernal-1.1.3/easel/documentation/figures/rnaseP-ecoli.eps:10805: ThW ==> the, thaw
data/infernal-1.1.3/easel/documentation/figures/rnaseP-ecoli.eps:10838: gaUs ==> gauss, gauze
data/infernal-1.1.3/easel/documentation/figures/rnaseP-ecoli.eps:10882: IsT ==> is, it, its, it's, sit, list
data/infernal-1.1.3/easel/documentation/figures/rnaseP-ecoli.eps:10890: Nd ==> And, 2nd
data/infernal-1.1.3/easel/documentation/figures/rnaseP-ecoli.eps:10906: bA ==> by, be
data/infernal-1.1.3/easel/documentation/figures/rnaseP-ecoli.eps:10915: bA ==> by, be
data/infernal-1.1.3/easel/documentation/figures/rnaseP-ecoli.eps:10931: ND ==> AND, 2ND
data/infernal-1.1.3/easel/documentation/figures/rnaseP-ecoli.eps:10942: OT ==> TO, OF, OR
data/infernal-1.1.3/easel/documentation/figures/rnaseP-ecoli.eps:10942: eDN ==> end
data/infernal-1.1.3/easel/documentation/figures/rnaseP-ecoli.eps:10990: ot ==> to, of, or
data/infernal-1.1.3/easel/documentation/figures/rnaseP-ecoli.eps:11087: uE ==> use, due
data/infernal-1.1.3/easel/documentation/figures/rnaseP-ecoli.eps:11100: EDe ==> edge
data/infernal-1.1.3/easel/documentation/figures/rnaseP-ecoli.eps:11125: BUId ==> build
data/infernal-1.1.3/easel/documentation/figures/rnaseP-ecoli.eps:11150: fO ==> of, for
data/infernal-1.1.3/easel/documentation/figures/rnaseP-ecoli.eps:11150: THI ==> THE, THIS
data/infernal-1.1.3/easel/documentation/figures/rnaseP-ecoli.eps:11158: hgE ==> he
data/infernal-1.1.3/easel/documentation/figures/rnaseP-ecoli.eps:11159: FO ==> OF, FOR
data/infernal-1.1.3/easel/documentation/figures/rnaseP-ecoli.eps:11264: BA ==> BY, BE
data/infernal-1.1.3/easel/documentation/figures/rnaseP-ecoli.eps:11279: ND ==> AND, 2ND
data/infernal-1.1.3/easel/documentation/figures/rnaseP-ecoli.eps:11310: TE ==> THE, BE, WE
data/infernal-1.1.3/easel/documentation/figures/rnaseP-ecoli.eps:11319: FO ==> OF, FOR
data/infernal-1.1.3/easel/documentation/figures/rnaseP-ecoli.eps:11387: TE ==> THE, BE, WE
data/infernal-1.1.3/easel/documentation/figures/rnaseP-ecoli.eps:11390: GrWo ==> grow
data/infernal-1.1.3/easel/documentation/figures/rnaseP-ecoli.eps:11458: Ue ==> Use, due
data/infernal-1.1.3/easel/documentation/figures/rnaseP-ecoli.eps:11519: ba ==> by, be
data/infernal-1.1.3/easel/documentation/figures/rnaseP-ecoli.eps:11615: Iif ==> If
data/infernal-1.1.3/easel/documentation/figures/rnaseP-ecoli.eps:11626: uE ==> use, due
data/infernal-1.1.3/easel/documentation/figures/rnaseP-ecoli.eps:11700: ded ==> dead
data/infernal-1.1.3/easel/documentation/figures/rnaseP-ecoli.eps:11752: oT ==> to, of, or
data/infernal-1.1.3/easel/documentation/figures/rnaseP-ecoli.eps:11880: ba ==> by, be
data/infernal-1.1.3/easel/documentation/figures/rnaseP-ecoli.eps:11911: BA ==> BY, BE
data/infernal-1.1.3/easel/documentation/figures/rnaseP-ecoli.eps:11974: BA ==> BY, BE
data/infernal-1.1.3/easel/documentation/figures/rnaseP-ecoli.eps:11979: oT ==> to, of, or
data/infernal-1.1.3/easel/documentation/figures/rnaseP-ecoli.eps:11987: sER ==> set
data/infernal-1.1.3/easel/documentation/figures/rnaseP-ecoli.eps:12027: FO ==> OF, FOR
data/infernal-1.1.3/easel/documentation/figures/rnaseP-ecoli.eps:12029: nD ==> and, 2nd
data/infernal-1.1.3/easel/documentation/figures/rnaseP-ecoli.eps:12037: ue ==> use, due
data/infernal-1.1.3/easel/documentation/figures/rnaseP-ecoli.eps:12057: Nd ==> And, 2nd
data/infernal-1.1.3/easel/documentation/figures/rnaseP-ecoli.eps:12061: Nd ==> And, 2nd
data/infernal-1.1.3/easel/documentation/figures/rnaseP-ecoli.eps:12066: fRO ==> for, from
data/infernal-1.1.3/easel/documentation/figures/rnaseP-ecoli.eps:12068: mAco ==> macro
data/infernal-1.1.3/easel/documentation/figures/rnaseP-ecoli.eps:12095: jUS ==> just
data/infernal-1.1.3/easel/documentation/figures/rnaseP-ecoli.eps:12227: Fo ==> Of, for
data/infernal-1.1.3/easel/documentation/figures/rnaseP-ecoli.eps:12247: ba ==> by, be
data/infernal-1.1.3/easel/documentation/figures/rnaseP-ecoli.eps:12247: Ba ==> By, be
data/infernal-1.1.3/easel/documentation/figures/rnaseP-ecoli.eps:12254: nD ==> and, 2nd
data/infernal-1.1.3/easel/documentation/figures/rnaseP-ecoli.eps:12265: te ==> the, be, we
data/infernal-1.1.3/easel/documentation/figures/rnaseP-ecoli.eps:12275: tE ==> the, be, we
data/infernal-1.1.3/easel/documentation/figures/rnaseP-ecoli.eps:12298: TE ==> THE, BE, WE
data/infernal-1.1.3/easel/documentation/figures/rnaseP-ecoli.eps:12298: ba ==> by, be
data/infernal-1.1.3/easel/documentation/figures/rnaseP-ecoli.eps:12327: Ue ==> Use, due
data/infernal-1.1.3/easel/documentation/figures/rnaseP-ecoli.eps:12344: ONl ==> only
data/infernal-1.1.3/easel/documentation/figures/rnaseP-ecoli.eps:12351: ot ==> to, of, or
data/infernal-1.1.3/easel/documentation/figures/rnaseP-ecoli.eps:12399: nD ==> and, 2nd
data/infernal-1.1.3/easel/documentation/figures/rnaseP-ecoli.eps:12475: nD ==> and, 2nd
data/infernal-1.1.3/easel/documentation/figures/rnaseP-ecoli.eps:12477: Ded ==> Dead
data/infernal-1.1.3/easel/documentation/figures/rnaseP-ecoli.eps:12522: FO ==> OF, FOR
data/infernal-1.1.3/easel/documentation/figures/rnaseP-ecoli.eps:12535: Fo ==> Of, for
data/infernal-1.1.3/easel/documentation/figures/rnaseP-ecoli.eps:12567: ba ==> by, be
data/infernal-1.1.3/easel/documentation/figures/rnaseP-ecoli.eps:12608: BA ==> BY, BE
data/infernal-1.1.3/easel/documentation/figures/rnaseP-ecoli.eps:12636: Fo ==> Of, for
data/infernal-1.1.3/easel/documentation/figures/rnaseP-ecoli.eps:12678: BA ==> BY, BE
data/infernal-1.1.3/easel/documentation/figures/rnaseP-ecoli.eps:12687: Te ==> The, be, we
data/infernal-1.1.3/easel/documentation/figures/rnaseP-ecoli.eps:12707: Nd ==> And, 2nd
data/infernal-1.1.3/easel/documentation/figures/rnaseP-ecoli.eps:12740: Te ==> The, be, we
data/infernal-1.1.3/easel/documentation/figures/rnaseP-ecoli.eps:12764: nd ==> and, 2nd
data/infernal-1.1.3/easel/documentation/figures/rnaseP-ecoli.eps:12777: ba ==> by, be
data/infernal-1.1.3/easel/documentation/figures/rnaseP-ecoli.eps:12839: uE ==> use, due
data/infernal-1.1.3/easel/documentation/figures/rnaseP-ecoli.eps:12885: Nd ==> And, 2nd
data/infernal-1.1.3/easel/documentation/figures/rnaseP-ecoli.eps:12897: FO ==> OF, FOR
data/infernal-1.1.3/easel/documentation/figures/rnaseP-ecoli.eps:12913: BA ==> BY, BE
data/infernal-1.1.3/easel/documentation/figures/rnaseP-ecoli.eps:12920: OT ==> TO, OF, OR
data/infernal-1.1.3/easel/documentation/figures/rnaseP-ecoli.eps:12920: Ba ==> By, be
data/infernal-1.1.3/easel/documentation/figures/rna_elements.eps:49: nd ==> and, 2nd
data/infernal-1.1.3/easel/documentation/figures/rna_elements.eps:225: nd ==> and, 2nd
data/infernal-1.1.3/easel/documentation/figures/rna_elements.eps:226: nd ==> and, 2nd
data/infernal-1.1.3/easel/documentation/figures/rna_elements.eps:260: nd ==> and, 2nd
data/infernal-1.1.3/easel/documentation/figures/rna_elements.eps:261: nd ==> and, 2nd
data/infernal-1.1.3/easel/documentation/figures/rna_elements.eps:390: nd ==> and, 2nd
data/infernal-1.1.3/easel/documentation/figures/rna_elements.eps:396: nd ==> and, 2nd
data/infernal-1.1.3/easel/documentation/figures/rna_elements.eps:397: nd ==> and, 2nd
data/infernal-1.1.3/easel/documentation/figures/rna_elements.eps:405: nd ==> and, 2nd
data/infernal-1.1.3/easel/documentation/figures/rna_elements.eps:406: nd ==> and, 2nd
data/infernal-1.1.3/easel/documentation/figures/rna_elements.eps:407: nd ==> and, 2nd
data/infernal-1.1.3/easel/documentation/figures/rna_elements.eps:408: nd ==> and, 2nd
data/infernal-1.1.3/easel/documentation/figures/rna_elements.eps:409: nd ==> and, 2nd
data/infernal-1.1.3/easel/documentation/figures/rna_elements.eps:410: nd ==> and, 2nd
data/infernal-1.1.3/easel/documentation/figures/rna_elements.eps:411: nd ==> and, 2nd
data/infernal-1.1.3/easel/documentation/figures/rna_elements.eps:412: nd ==> and, 2nd
data/infernal-1.1.3/easel/documentation/figures/rna_elements.eps:413: nd ==> and, 2nd
data/infernal-1.1.3/easel/documentation/figures/rna_elements.eps:414: nd ==> and, 2nd
data/infernal-1.1.3/easel/documentation/figures/rna_elements.eps:415: nd ==> and, 2nd
data/infernal-1.1.3/easel/documentation/figures/rna_elements.eps:416: nd ==> and, 2nd
data/infernal-1.1.3/easel/documentation/figures/rna_elements.eps:417: nd ==> and, 2nd
data/infernal-1.1.3/easel/documentation/figures/rna_elements.eps:418: nd ==> and, 2nd
data/infernal-1.1.3/easel/documentation/figures/rna_elements.eps:419: nd ==> and, 2nd
data/infernal-1.1.3/easel/documentation/figures/rna_elements.eps:420: nd ==> and, 2nd
data/infernal-1.1.3/easel/documentation/figures/rna_elements.eps:421: nd ==> and, 2nd
data/infernal-1.1.3/easel/documentation/figures/rna_elements.eps:424: nd ==> and, 2nd
data/infernal-1.1.3/easel/documentation/figures/rna_elements.eps:429: nd ==> and, 2nd
data/infernal-1.1.3/easel/documentation/figures/rna_elements.eps:430: nd ==> and, 2nd
data/infernal-1.1.3/easel/documentation/figures/rna_elements.eps:431: nd ==> and, 2nd
data/infernal-1.1.3/easel/documentation/figures/rna_elements.eps:432: nd ==> and, 2nd
data/infernal-1.1.3/easel/documentation/figures/rna_elements.eps:434: nd ==> and, 2nd
data/infernal-1.1.3/easel/documentation/figures/rna_elements.eps:435: nd ==> and, 2nd
data/infernal-1.1.3/easel/documentation/figures/rna_elements.eps:438: nd ==> and, 2nd
data/infernal-1.1.3/easel/documentation/figures/rna_elements.eps:439: nd ==> and, 2nd
data/infernal-1.1.3/easel/documentation/figures/rna_elements.eps:440: nd ==> and, 2nd
data/infernal-1.1.3/easel/documentation/figures/rna_elements.eps:443: nd ==> and, 2nd
data/infernal-1.1.3/easel/documentation/figures/rna_elements.eps:2442: nd ==> and, 2nd
data/infernal-1.1.3/easel/documentation/figures/rna_elements.eps:2445: nd ==> and, 2nd
data/infernal-1.1.3/easel/documentation/figures/rna_elements.eps:2446: nd ==> and, 2nd
data/infernal-1.1.3/easel/documentation/figures/rna_elements.eps:2448: nd ==> and, 2nd
data/infernal-1.1.3/easel/documentation/figures/rna_elements.eps:2449: nd ==> and, 2nd
data/infernal-1.1.3/easel/documentation/figures/rna_elements.eps:2457: nd ==> and, 2nd
data/infernal-1.1.3/easel/documentation/figures/rna_elements.eps:2458: nd ==> and, 2nd
data/infernal-1.1.3/easel/documentation/figures/rna_elements.eps:2459: nd ==> and, 2nd
data/infernal-1.1.3/easel/documentation/figures/rna_elements.eps:2460: nd ==> and, 2nd
data/infernal-1.1.3/easel/documentation/figures/rna_elements.eps:2461: nd ==> and, 2nd
data/infernal-1.1.3/easel/documentation/figures/rna_elements.eps:2462: nd ==> and, 2nd
data/infernal-1.1.3/easel/documentation/figures/rna_elements.eps:2463: nd ==> and, 2nd
data/infernal-1.1.3/easel/documentation/figures/rna_elements.eps:2464: nd ==> and, 2nd
data/infernal-1.1.3/easel/documentation/figures/rna_elements.eps:2465: nd ==> and, 2nd
data/infernal-1.1.3/easel/documentation/figures/rna_elements.eps:2466: nd ==> and, 2nd
data/infernal-1.1.3/easel/documentation/figures/rna_elements.eps:2467: nd ==> and, 2nd
data/infernal-1.1.3/easel/documentation/figures/rna_elements.eps:2468: nd ==> and, 2nd
data/infernal-1.1.3/easel/documentation/figures/rna_elements.eps:2469: nd ==> and, 2nd
data/infernal-1.1.3/easel/documentation/figures/rna_elements.eps:2470: nd ==> and, 2nd
data/infernal-1.1.3/easel/documentation/figures/rna_elements.eps:2471: nd ==> and, 2nd
data/infernal-1.1.3/easel/documentation/figures/rna_elements.eps:2472: nd ==> and, 2nd
data/infernal-1.1.3/easel/documentation/figures/rna_elements.eps:2473: nd ==> and, 2nd
data/infernal-1.1.3/easel/documentation/figures/rna_elements.eps:3983: ND ==> AND, 2ND
data/infernal-1.1.3/easel/documentation/figures/rna_elements.eps:3989: ND ==> AND, 2ND
data/infernal-1.1.3/easel/documentation/figures/rna_elements.eps:3991: ND ==> AND, 2ND
data/infernal-1.1.3/easel/documentation/figures/rna_elements.eps:3993: ND ==> AND, 2ND
data/infernal-1.1.3/easel/documentation/figures/rna_elements.eps:4003: ND ==> AND, 2ND
data/infernal-1.1.3/easel/documentation/figures/rna_elements.eps:4009: ND ==> AND, 2ND
data/infernal-1.1.3/easel/documentation/figures/rna_elements.eps:4015: ND ==> AND, 2ND
data/infernal-1.1.3/easel/documentation/figures/rna_elements.eps:4022: ND ==> AND, 2ND
data/infernal-1.1.3/easel/documentation/figures/rna_elements.eps:4028: ND ==> AND, 2ND
data/infernal-1.1.3/easel/documentation/figures/rna_elements.eps:4036: ND ==> AND, 2ND
data/infernal-1.1.3/easel/documentation/figures/rna_elements.eps:4041: ND ==> AND, 2ND
data/infernal-1.1.3/easel/documentation/figures/rna_elements.eps:4044: ND ==> AND, 2ND
data/infernal-1.1.3/easel/documentation/figures/rna_elements.eps:4046: ND ==> AND, 2ND
data/infernal-1.1.3/easel/documentation/figures/rna_elements.eps:4053: ND ==> AND, 2ND
data/infernal-1.1.3/easel/documentation/figures/rna_elements.eps:4058: ND ==> AND, 2ND
data/infernal-1.1.3/easel/documentation/figures/rna_elements.eps:4064: ND ==> AND, 2ND
data/infernal-1.1.3/easel/documentation/figures/rna_elements.eps:4071: ND ==> AND, 2ND
data/infernal-1.1.3/easel/documentation/figures/rna_elements.eps:4075: ND ==> AND, 2ND
data/infernal-1.1.3/easel/documentation/figures/rna_elements.eps:4084: ND ==> AND, 2ND
data/infernal-1.1.3/easel/documentation/figures/rna_elements.eps:4089: ND ==> AND, 2ND
data/infernal-1.1.3/easel/documentation/figures/rna_elements.eps:4094: ND ==> AND, 2ND
data/infernal-1.1.3/easel/documentation/figures/rna_elements.eps:4326: bA ==> by, be
data/infernal-1.1.3/easel/documentation/figures/rna_elements.eps:4360: OT ==> TO, OF, OR
data/infernal-1.1.3/easel/documentation/figures/rna_elements.eps:4407: BA ==> BY, BE
data/infernal-1.1.3/easel/documentation/figures/rna_elements.eps:4428: ue ==> use, due
data/infernal-1.1.3/easel/documentation/figures/rna_elements.eps:4441: DAa ==> data
data/infernal-1.1.3/easel/documentation/figures/rna_elements.eps:4466: OT ==> TO, OF, OR
data/infernal-1.1.3/easel/documentation/figures/rna_elements.eps:4553: ue ==> use, due
data/infernal-1.1.3/easel/documentation/figures/rna_elements.eps:4594: nD ==> and, 2nd
data/infernal-1.1.3/easel/documentation/figures/rna_elements.eps:4602: Ba ==> By, be
data/infernal-1.1.3/easel/documentation/figures/rna_elements.eps:4630: ND ==> AND, 2ND
data/infernal-1.1.3/easel/documentation/figures/rna_elements.eps:4635: ba ==> by, be
data/infernal-1.1.3/easel/documentation/figures/rna_elements.eps:4644: aske ==> ask
data/infernal-1.1.3/easel/documentation/figures/rna_elements.eps:4655: Fo ==> Of, for
data/infernal-1.1.3/easel/documentation/figures/rna_elements.eps:4665: fO ==> of, for
data/infernal-1.1.3/easel/documentation/figures/rna_elements.eps:4680: Ue ==> Use, due
data/infernal-1.1.3/easel/documentation/figures/rna_elements.eps:4700: UE ==> USE, DUE
data/infernal-1.1.3/easel/documentation/figures/rna_elements.eps:4743: OT ==> TO, OF, OR
data/infernal-1.1.3/easel/documentation/figures/rna_elements.eps:4747: bA ==> by, be
data/infernal-1.1.3/easel/documentation/figures/rna_elements.eps:4803: bA ==> by, be
data/infernal-1.1.3/easel/documentation/figures/rna_elements.eps:4818: tE ==> the, be, we
data/infernal-1.1.3/easel/documentation/figures/rna_elements.eps:4819: Ba ==> By, be
data/infernal-1.1.3/easel/documentation/figures/rna_elements.eps:4846: Ue ==> Use, due
data/infernal-1.1.3/easel/documentation/figures/rna_elements.eps:4873: Fo ==> Of, for
data/infernal-1.1.3/easel/documentation/figures/rna_elements.eps:4902: nd ==> and, 2nd
data/infernal-1.1.3/easel/documentation/figures/rna_elements.eps:4910: ND ==> AND, 2ND
data/infernal-1.1.3/easel/documentation/figures/rna_elements.eps:5003: TE ==> THE, BE, WE
data/infernal-1.1.3/easel/documentation/figures/rna_elements.eps:5015: Te ==> The, be, we
data/infernal-1.1.3/easel/documentation/figures/rna_elements.eps:5023: fAVE ==> save
data/infernal-1.1.3/easel/documentation/figures/rna_elements.eps:5037: gir ==> git
data/infernal-1.1.3/easel/documentation/figures/rna_elements.eps:5052: Nd ==> And, 2nd
data/infernal-1.1.3/easel/documentation/figures/rna_elements.eps:5058: fO ==> of, for
data/infernal-1.1.3/easel/documentation/figures/rna_elements.eps:5073: seH ==> she
data/infernal-1.1.3/easel/documentation/figures/rna_elements.eps:5078: bVe ==> be
data/infernal-1.1.3/easel/documentation/figures/rna_elements.eps:5096: TE ==> THE, BE, WE
data/infernal-1.1.3/easel/documentation/figures/rna_elements.eps:5116: uE ==> use, due
data/infernal-1.1.3/easel/documentation/figures/rna_elements.eps:5128: ba ==> by, be
data/infernal-1.1.3/easel/documentation/figures/rna_elements.eps:5166: Nd ==> And, 2nd
data/infernal-1.1.3/easel/documentation/figures/rna_elements.eps:5213: Teh ==> The
data/infernal-1.1.3/easel/documentation/figures/rna_elements.eps:5239: Nd ==> And, 2nd
data/infernal-1.1.3/easel/documentation/figures/rna_elements.eps:5245: fO ==> of, for
data/infernal-1.1.3/easel/documentation/figures/rna_elements.eps:5256: URE ==> SURE, IRE, ARE, UREA, RUE
data/infernal-1.1.3/easel/documentation/figures/rna_elements.eps:5279: Nd ==> And, 2nd
data/infernal-1.1.3/easel/documentation/figures/rna_elements.eps:5311: AKS ==> ASK
data/infernal-1.1.3/easel/documentation/figures/rna_elements.eps:5331: TE ==> THE, BE, WE
data/infernal-1.1.3/easel/documentation/figures/rna_elements.eps:5390: OT ==> TO, OF, OR
data/infernal-1.1.3/easel/documentation/figures/rna_elements.eps:5391: NiN ==> inn, min, bin, nine
data/infernal-1.1.3/easel/documentation/figures/rna_elements.eps:5392: uE ==> use, due
data/infernal-1.1.3/easel/documentation/figures/rna_elements.eps:5395: nd ==> and, 2nd
data/infernal-1.1.3/easel/documentation/figures/rna_elements.eps:5422: ba ==> by, be
data/infernal-1.1.3/easel/documentation/figures/rna_elements.eps:5469: SAV ==> SAVE
data/infernal-1.1.3/easel/documentation/figures/rna_elements.eps:5474: Te ==> The, be, we
data/infernal-1.1.3/easel/documentation/figures/rna_elements.eps:5484: Fof ==> For
data/infernal-1.1.3/easel/documentation/figures/rna_elements.eps:5499: 3sT ==> 3rd
data/infernal-1.1.3/easel/documentation/figures/rna_elements.eps:5583: Hda ==> Had
data/infernal-1.1.3/easel/documentation/figures/rna_elements.eps:5599: FO ==> OF, FOR
data/infernal-1.1.3/easel/documentation/figures/rna_elements.eps:5610: fo ==> of, for
data/infernal-1.1.3/easel/documentation/figures/rna_elements.eps:5676: KNo ==> know
data/infernal-1.1.3/easel/documentation/figures/rna_elements.eps:5690: ba ==> by, be
data/infernal-1.1.3/easel/documentation/figures/rna_elements.eps:5694: fO ==> of, for
data/infernal-1.1.3/easel/documentation/figures/rna_elements.eps:5712: ND ==> AND, 2ND
data/infernal-1.1.3/easel/documentation/figures/rna_elements.eps:5726: OnS ==> owns
data/infernal-1.1.3/easel/documentation/figures/rna_elements.eps:5730: keT ==> kept
data/infernal-1.1.3/easel/documentation/figures/rna_elements.eps:5787: Te ==> The, be, we
data/infernal-1.1.3/easel/documentation/figures/rna_elements.eps:5847: Nd ==> And, 2nd
data/infernal-1.1.3/easel/documentation/figures/rna_elements.eps:5882: ANE ==> AND
data/infernal-1.1.3/easel/documentation/figures/rna_elements.eps:5946: Nd ==> And, 2nd
data/infernal-1.1.3/easel/documentation/figures/rna_elements.eps:5958: tE ==> the, be, we
data/infernal-1.1.3/easel/documentation/figures/rna_elements.eps:5971: ot ==> to, of, or
data/infernal-1.1.3/easel/documentation/figures/rna_elements.eps:6001: OLL ==> ALL, OLE, OLD, OLLY, OIL
data/infernal-1.1.3/easel/documentation/figures/rna_elements.eps:6100: uE ==> use, due
data/infernal-1.1.3/easel/documentation/figures/rna_elements.eps:6132: FO ==> OF, FOR
data/infernal-1.1.3/easel/documentation/figures/rna_elements.eps:6198: ALS ==> ALSO
data/infernal-1.1.3/easel/documentation/figures/rna_elements.eps:6237: BA ==> BY, BE
data/infernal-1.1.3/easel/documentation/figures/rna_elements.eps:6263: EdE ==> edge
data/infernal-1.1.3/easel/documentation/figures/rna_elements.eps:6263: uE ==> use, due
data/infernal-1.1.3/easel/documentation/figures/rna_elements.eps:6318: gIr ==> git
data/infernal-1.1.3/easel/documentation/figures/rna_elements.eps:6346: Te ==> The, be, we
data/infernal-1.1.3/easel/documentation/figures/rna_elements.eps:6349: NIN ==> INN, MIN, BIN, NINE
data/infernal-1.1.3/easel/documentation/figures/rna_elements.eps:6385: ba ==> by, be
data/infernal-1.1.3/easel/documentation/figures/rna_elements.eps:6503: uE ==> use, due
data/infernal-1.1.3/easel/documentation/figures/rna_elements.eps:6509: UE ==> USE, DUE
data/infernal-1.1.3/easel/documentation/figures/rna_elements.eps:6541: tE ==> the, be, we
data/infernal-1.1.3/easel/documentation/figures/rnaseP-bsu-alignment.eps:49: nd ==> and, 2nd
data/infernal-1.1.3/easel/documentation/figures/rnaseP-bsu-alignment.eps:225: nd ==> and, 2nd
data/infernal-1.1.3/easel/documentation/figures/rnaseP-bsu-alignment.eps:226: nd ==> and, 2nd
data/infernal-1.1.3/easel/documentation/figures/rnaseP-bsu-alignment.eps:260: nd ==> and, 2nd
data/infernal-1.1.3/easel/documentation/figures/rnaseP-bsu-alignment.eps:261: nd ==> and, 2nd
data/infernal-1.1.3/easel/documentation/figures/rnaseP-bsu-alignment.eps:390: nd ==> and, 2nd
data/infernal-1.1.3/easel/documentation/figures/rnaseP-bsu-alignment.eps:396: nd ==> and, 2nd
data/infernal-1.1.3/easel/documentation/figures/rnaseP-bsu-alignment.eps:397: nd ==> and, 2nd
data/infernal-1.1.3/easel/documentation/figures/rnaseP-bsu-alignment.eps:405: nd ==> and, 2nd
data/infernal-1.1.3/easel/documentation/figures/rnaseP-bsu-alignment.eps:406: nd ==> and, 2nd
data/infernal-1.1.3/easel/documentation/figures/rnaseP-bsu-alignment.eps:407: nd ==> and, 2nd
data/infernal-1.1.3/easel/documentation/figures/rnaseP-bsu-alignment.eps:408: nd ==> and, 2nd
data/infernal-1.1.3/easel/documentation/figures/rnaseP-bsu-alignment.eps:409: nd ==> and, 2nd
data/infernal-1.1.3/easel/documentation/figures/rnaseP-bsu-alignment.eps:410: nd ==> and, 2nd
data/infernal-1.1.3/easel/documentation/figures/rnaseP-bsu-alignment.eps:411: nd ==> and, 2nd
data/infernal-1.1.3/easel/documentation/figures/rnaseP-bsu-alignment.eps:412: nd ==> and, 2nd
data/infernal-1.1.3/easel/documentation/figures/rnaseP-bsu-alignment.eps:413: nd ==> and, 2nd
data/infernal-1.1.3/easel/documentation/figures/rnaseP-bsu-alignment.eps:414: nd ==> and, 2nd
data/infernal-1.1.3/easel/documentation/figures/rnaseP-bsu-alignment.eps:415: nd ==> and, 2nd
data/infernal-1.1.3/easel/documentation/figures/rnaseP-bsu-alignment.eps:416: nd ==> and, 2nd
data/infernal-1.1.3/easel/documentation/figures/rnaseP-bsu-alignment.eps:417: nd ==> and, 2nd
data/infernal-1.1.3/easel/documentation/figures/rnaseP-bsu-alignment.eps:418: nd ==> and, 2nd
data/infernal-1.1.3/easel/documentation/figures/rnaseP-bsu-alignment.eps:419: nd ==> and, 2nd
data/infernal-1.1.3/easel/documentation/figures/rnaseP-bsu-alignment.eps:420: nd ==> and, 2nd
data/infernal-1.1.3/easel/documentation/figures/rnaseP-bsu-alignment.eps:421: nd ==> and, 2nd
data/infernal-1.1.3/easel/documentation/figures/rnaseP-bsu-alignment.eps:424: nd ==> and, 2nd
data/infernal-1.1.3/easel/documentation/figures/rnaseP-bsu-alignment.eps:429: nd ==> and, 2nd
data/infernal-1.1.3/easel/documentation/figures/rnaseP-bsu-alignment.eps:430: nd ==> and, 2nd
data/infernal-1.1.3/easel/documentation/figures/rnaseP-bsu-alignment.eps:431: nd ==> and, 2nd
data/infernal-1.1.3/easel/documentation/figures/rnaseP-bsu-alignment.eps:432: nd ==> and, 2nd
data/infernal-1.1.3/easel/documentation/figures/rnaseP-bsu-alignment.eps:434: nd ==> and, 2nd
data/infernal-1.1.3/easel/documentation/figures/rnaseP-bsu-alignment.eps:435: nd ==> and, 2nd
data/infernal-1.1.3/easel/documentation/figures/rnaseP-bsu-alignment.eps:438: nd ==> and, 2nd
data/infernal-1.1.3/easel/documentation/figures/rnaseP-bsu-alignment.eps:439: nd ==> and, 2nd
data/infernal-1.1.3/easel/documentation/figures/rnaseP-bsu-alignment.eps:440: nd ==> and, 2nd
data/infernal-1.1.3/easel/documentation/figures/rnaseP-bsu-alignment.eps:443: nd ==> and, 2nd
data/infernal-1.1.3/easel/documentation/figures/rnaseP-bsu-alignment.eps:2442: nd ==> and, 2nd
data/infernal-1.1.3/easel/documentation/figures/rnaseP-bsu-alignment.eps:2445: nd ==> and, 2nd
data/infernal-1.1.3/easel/documentation/figures/rnaseP-bsu-alignment.eps:2446: nd ==> and, 2nd
data/infernal-1.1.3/easel/documentation/figures/rnaseP-bsu-alignment.eps:2448: nd ==> and, 2nd
data/infernal-1.1.3/easel/documentation/figures/rnaseP-bsu-alignment.eps:2449: nd ==> and, 2nd
data/infernal-1.1.3/easel/documentation/figures/rnaseP-bsu-alignment.eps:2457: nd ==> and, 2nd
data/infernal-1.1.3/easel/documentation/figures/rnaseP-bsu-alignment.eps:2458: nd ==> and, 2nd
data/infernal-1.1.3/easel/documentation/figures/rnaseP-bsu-alignment.eps:2459: nd ==> and, 2nd
data/infernal-1.1.3/easel/documentation/figures/rnaseP-bsu-alignment.eps:2460: nd ==> and, 2nd
data/infernal-1.1.3/easel/documentation/figures/rnaseP-bsu-alignment.eps:2461: nd ==> and, 2nd
data/infernal-1.1.3/easel/documentation/figures/rnaseP-bsu-alignment.eps:2462: nd ==> and, 2nd
data/infernal-1.1.3/easel/documentation/figures/rnaseP-bsu-alignment.eps:2463: nd ==> and, 2nd
data/infernal-1.1.3/easel/documentation/figures/rnaseP-bsu-alignment.eps:2464: nd ==> and, 2nd
data/infernal-1.1.3/easel/documentation/figures/rnaseP-bsu-alignment.eps:2465: nd ==> and, 2nd
data/infernal-1.1.3/easel/documentation/figures/rnaseP-bsu-alignment.eps:2466: nd ==> and, 2nd
data/infernal-1.1.3/easel/documentation/figures/rnaseP-bsu-alignment.eps:2467: nd ==> and, 2nd
data/infernal-1.1.3/easel/documentation/figures/rnaseP-bsu-alignment.eps:2468: nd ==> and, 2nd
data/infernal-1.1.3/easel/documentation/figures/rnaseP-bsu-alignment.eps:2469: nd ==> and, 2nd
data/infernal-1.1.3/easel/documentation/figures/rnaseP-bsu-alignment.eps:2470: nd ==> and, 2nd
data/infernal-1.1.3/easel/documentation/figures/rnaseP-bsu-alignment.eps:2471: nd ==> and, 2nd
data/infernal-1.1.3/easel/documentation/figures/rnaseP-bsu-alignment.eps:2472: nd ==> and, 2nd
data/infernal-1.1.3/easel/documentation/figures/rnaseP-bsu-alignment.eps:2473: nd ==> and, 2nd
data/infernal-1.1.3/easel/documentation/figures/rnaseP-bsu-alignment.eps:3383: ND ==> AND, 2ND
data/infernal-1.1.3/easel/documentation/figures/rnaseP-bsu-alignment.eps:3388: ND ==> AND, 2ND
data/infernal-1.1.3/easel/documentation/figures/rnaseP-bsu-alignment.eps:3390: ND ==> AND, 2ND
data/infernal-1.1.3/easel/documentation/figures/rnaseP-bsu-alignment.eps:3394: ND ==> AND, 2ND
data/infernal-1.1.3/easel/documentation/figures/rnaseP-bsu-alignment.eps:3402: ND ==> AND, 2ND
data/infernal-1.1.3/easel/documentation/figures/rnaseP-bsu-alignment.eps:3412: ND ==> AND, 2ND
data/infernal-1.1.3/easel/documentation/figures/rnaseP-bsu-alignment.eps:3417: ND ==> AND, 2ND
data/infernal-1.1.3/easel/documentation/figures/rnaseP-bsu-alignment.eps:3421: ND ==> AND, 2ND
data/infernal-1.1.3/easel/documentation/figures/rnaseP-bsu-alignment.eps:3427: ND ==> AND, 2ND
data/infernal-1.1.3/easel/documentation/figures/rnaseP-bsu-alignment.eps:3433: ND ==> AND, 2ND
data/infernal-1.1.3/easel/documentation/figures/rnaseP-bsu-alignment.eps:3441: ND ==> AND, 2ND
data/infernal-1.1.3/easel/documentation/figures/rnaseP-bsu-alignment.eps:3447: ND ==> AND, 2ND
data/infernal-1.1.3/easel/documentation/figures/rnaseP-bsu-alignment.eps:3453: ND ==> AND, 2ND
data/infernal-1.1.3/easel/documentation/figures/rnaseP-bsu-alignment.eps:3459: ND ==> AND, 2ND
data/infernal-1.1.3/easel/documentation/figures/rnaseP-bsu-alignment.eps:3463: ND ==> AND, 2ND
data/infernal-1.1.3/easel/documentation/figures/rnaseP-bsu-alignment.eps:3466: ND ==> AND, 2ND
data/infernal-1.1.3/easel/documentation/figures/rnaseP-bsu-alignment.eps:3472: ND ==> AND, 2ND
data/infernal-1.1.3/easel/documentation/figures/rnaseP-bsu-alignment.eps:3478: ND ==> AND, 2ND
data/infernal-1.1.3/easel/documentation/figures/rnaseP-bsu-alignment.eps:3485: ND ==> AND, 2ND
data/infernal-1.1.3/easel/documentation/figures/rnaseP-bsu-alignment.eps:3491: ND ==> AND, 2ND
data/infernal-1.1.3/easel/documentation/figures/rnaseP-bsu-alignment.eps:3549: ND ==> AND, 2ND
data/infernal-1.1.3/easel/documentation/figures/rnaseP-bsu-alignment.eps:3554: ND ==> AND, 2ND
data/infernal-1.1.3/easel/documentation/figures/rnaseP-bsu-alignment.eps:3556: ND ==> AND, 2ND
data/infernal-1.1.3/easel/documentation/figures/rnaseP-bsu-alignment.eps:3564: ND ==> AND, 2ND
data/infernal-1.1.3/easel/documentation/figures/rnaseP-bsu-alignment.eps:3572: ND ==> AND, 2ND
data/infernal-1.1.3/easel/documentation/figures/rnaseP-bsu-alignment.eps:3578: ND ==> AND, 2ND
data/infernal-1.1.3/easel/documentation/figures/rnaseP-bsu-alignment.eps:3584: ND ==> AND, 2ND
data/infernal-1.1.3/easel/documentation/figures/rnaseP-bsu-alignment.eps:3589: ND ==> AND, 2ND
data/infernal-1.1.3/easel/documentation/figures/rnaseP-bsu-alignment.eps:3593: ND ==> AND, 2ND
data/infernal-1.1.3/easel/documentation/figures/rnaseP-bsu-alignment.eps:3600: ND ==> AND, 2ND
data/infernal-1.1.3/easel/documentation/figures/rnaseP-bsu-alignment.eps:3604: ND ==> AND, 2ND
data/infernal-1.1.3/easel/documentation/figures/rnaseP-bsu-alignment.eps:3610: ND ==> AND, 2ND
data/infernal-1.1.3/easel/documentation/figures/rnaseP-bsu-alignment.eps:3662: ND ==> AND, 2ND
data/infernal-1.1.3/easel/documentation/figures/rnaseP-bsu-alignment.eps:3667: ND ==> AND, 2ND
data/infernal-1.1.3/easel/documentation/figures/rnaseP-bsu-alignment.eps:3671: ND ==> AND, 2ND
data/infernal-1.1.3/easel/documentation/figures/rnaseP-bsu-alignment.eps:3724: ND ==> AND, 2ND
data/infernal-1.1.3/easel/documentation/figures/rnaseP-bsu-alignment.eps:3727: ND ==> AND, 2ND
data/infernal-1.1.3/easel/documentation/figures/rnaseP-bsu-alignment.eps:3757: ND ==> AND, 2ND
data/infernal-1.1.3/easel/documentation/figures/rnaseP-bsu-alignment.eps:5403: ND ==> AND, 2ND
data/infernal-1.1.3/easel/documentation/figures/rnaseP-bsu-alignment.eps:5410: ND ==> AND, 2ND
data/infernal-1.1.3/easel/documentation/figures/rnaseP-bsu-alignment.eps:5413: ND ==> AND, 2ND
data/infernal-1.1.3/easel/documentation/figures/rnaseP-bsu-alignment.eps:5467: ND ==> AND, 2ND
data/infernal-1.1.3/easel/documentation/figures/rnaseP-bsu-alignment.eps:5472: ND ==> AND, 2ND
data/infernal-1.1.3/easel/documentation/figures/rnaseP-bsu-alignment.eps:5476: ND ==> AND, 2ND
data/infernal-1.1.3/easel/documentation/figures/rnaseP-bsu-alignment.eps:5482: ND ==> AND, 2ND
data/infernal-1.1.3/easel/documentation/figures/rnaseP-bsu-alignment.eps:5491: ND ==> AND, 2ND
data/infernal-1.1.3/easel/documentation/figures/rnaseP-bsu-alignment.eps:5497: ND ==> AND, 2ND
data/infernal-1.1.3/easel/documentation/figures/rnaseP-bsu-alignment.eps:5540: ND ==> AND, 2ND
data/infernal-1.1.3/easel/documentation/figures/rnaseP-bsu-alignment.eps:5546: ND ==> AND, 2ND
data/infernal-1.1.3/easel/documentation/figures/rnaseP-bsu-alignment.eps:5551: ND ==> AND, 2ND
data/infernal-1.1.3/easel/documentation/figures/rnaseP-bsu-alignment.eps:5558: ND ==> AND, 2ND
data/infernal-1.1.3/easel/documentation/figures/rnaseP-bsu-alignment.eps:5562: ND ==> AND, 2ND
data/infernal-1.1.3/easel/documentation/figures/rnaseP-bsu-alignment.eps:5572: ND ==> AND, 2ND
data/infernal-1.1.3/easel/documentation/figures/rnaseP-bsu-alignment.eps:5580: ND ==> AND, 2ND
data/infernal-1.1.3/easel/documentation/figures/rnaseP-bsu-alignment.eps:5686: ND ==> AND, 2ND
data/infernal-1.1.3/easel/documentation/figures/rnaseP-bsu-alignment.eps:5690: ND ==> AND, 2ND
data/infernal-1.1.3/easel/documentation/figures/rnaseP-bsu-alignment.eps:5693: ND ==> AND, 2ND
data/infernal-1.1.3/easel/documentation/figures/rnaseP-bsu-alignment.eps:5697: ND ==> AND, 2ND
data/infernal-1.1.3/easel/documentation/figures/rnaseP-bsu-alignment.eps:5702: ND ==> AND, 2ND
data/infernal-1.1.3/easel/documentation/figures/rnaseP-bsu-alignment.eps:5706: ND ==> AND, 2ND
data/infernal-1.1.3/easel/documentation/figures/rnaseP-bsu-alignment.eps:5711: ND ==> AND, 2ND
data/infernal-1.1.3/easel/documentation/figures/rnaseP-bsu-alignment.eps:5714: ND ==> AND, 2ND
data/infernal-1.1.3/easel/documentation/figures/rnaseP-bsu-alignment.eps:5717: ND ==> AND, 2ND
data/infernal-1.1.3/easel/documentation/figures/rnaseP-bsu-alignment.eps:5720: ND ==> AND, 2ND
data/infernal-1.1.3/easel/documentation/figures/rnaseP-bsu-alignment.eps:5725: ND ==> AND, 2ND
data/infernal-1.1.3/easel/documentation/figures/rnaseP-bsu-alignment.eps:5729: ND ==> AND, 2ND
data/infernal-1.1.3/easel/documentation/figures/rnaseP-bsu-alignment.eps:5774: ND ==> AND, 2ND
data/infernal-1.1.3/easel/documentation/figures/rnaseP-bsu-alignment.eps:5777: ND ==> AND, 2ND
data/infernal-1.1.3/easel/documentation/figures/rnaseP-bsu-alignment.eps:5781: ND ==> AND, 2ND
data/infernal-1.1.3/easel/documentation/figures/rnaseP-bsu-alignment.eps:5785: ND ==> AND, 2ND
data/infernal-1.1.3/easel/documentation/figures/rnaseP-bsu-alignment.eps:5792: ND ==> AND, 2ND
data/infernal-1.1.3/easel/documentation/figures/rnaseP-bsu-alignment.eps:5980: fO ==> of, for
data/infernal-1.1.3/easel/documentation/figures/rnaseP-bsu-alignment.eps:6015: BA ==> BY, BE
data/infernal-1.1.3/easel/documentation/figures/rnaseP-bsu-alignment.eps:6060: UE ==> USE, DUE
data/infernal-1.1.3/easel/documentation/figures/rnaseP-bsu-alignment.eps:6095: bA ==> by, be
data/infernal-1.1.3/easel/documentation/figures/rnaseP-bsu-alignment.eps:6101: nd ==> and, 2nd
data/infernal-1.1.3/easel/documentation/figures/rnaseP-bsu-alignment.eps:6151: fO ==> of, for
data/infernal-1.1.3/easel/documentation/figures/rnaseP-bsu-alignment.eps:6201: oTU ==> out
data/infernal-1.1.3/easel/documentation/figures/rnaseP-bsu-alignment.eps:6235: oT ==> to, of, or
data/infernal-1.1.3/easel/documentation/figures/rnaseP-bsu-alignment.eps:6241: ND ==> AND, 2ND
data/infernal-1.1.3/easel/documentation/figures/rnaseP-bsu-alignment.eps:6260: 2sT ==> 2nd
data/infernal-1.1.3/easel/documentation/figures/rnaseP-bsu-alignment.eps:6272: SXl ==> xsl
data/infernal-1.1.3/easel/documentation/figures/rnaseP-bsu-alignment.eps:6295: adN ==> and
data/infernal-1.1.3/easel/documentation/figures/rnaseP-bsu-alignment.eps:6333: hTe ==> the
data/infernal-1.1.3/easel/documentation/figures/rnaseP-bsu-alignment.eps:6351: Fo ==> Of, for
data/infernal-1.1.3/easel/documentation/figures/rnaseP-bsu-alignment.eps:6353: acn ==> can, acne
data/infernal-1.1.3/easel/documentation/figures/rnaseP-bsu-alignment.eps:6356: TE ==> THE, BE, WE
data/infernal-1.1.3/easel/documentation/figures/rnaseP-bsu-alignment.eps:6420: OnY ==> only
data/infernal-1.1.3/easel/documentation/figures/rnaseP-bsu-alignment.eps:6483: fO ==> of, for
data/infernal-1.1.3/easel/documentation/figures/rnaseP-bsu-alignment.eps:6496: Ba ==> By, be
data/infernal-1.1.3/easel/documentation/figures/rnaseP-bsu-alignment.eps:6588: hEL ==> help, hell, heal
data/infernal-1.1.3/easel/documentation/figures/rnaseP-bsu-alignment.eps:6646: bre ==> be, brie
data/infernal-1.1.3/easel/documentation/figures/rnaseP-bsu-alignment.eps:6649: otho ==> otoh
data/infernal-1.1.3/easel/documentation/figures/rnaseP-bsu-alignment.eps:6658: ot ==> to, of, or
data/infernal-1.1.3/easel/documentation/figures/rnaseP-bsu-alignment.eps:6659: jUS ==> just
data/infernal-1.1.3/easel/documentation/figures/rnaseP-bsu-alignment.eps:6704: nd ==> and, 2nd
data/infernal-1.1.3/easel/documentation/figures/rnaseP-bsu-alignment.eps:6704: BA ==> BY, BE
data/infernal-1.1.3/easel/documentation/figures/rnaseP-bsu-alignment.eps:6733: Te ==> The, be, we
data/infernal-1.1.3/easel/documentation/figures/rnaseP-bsu-alignment.eps:6769: giR ==> git
data/infernal-1.1.3/easel/documentation/figures/rnaseP-bsu-alignment.eps:6773: GIR ==> GIT
data/infernal-1.1.3/easel/documentation/figures/rnaseP-bsu-alignment.eps:6787: ue ==> use, due
data/infernal-1.1.3/easel/documentation/figures/rnaseP-bsu-alignment.eps:6801: ACI ==> ACPI
data/infernal-1.1.3/easel/documentation/figures/rnaseP-bsu-alignment.eps:6803: ue ==> use, due
data/infernal-1.1.3/easel/documentation/figures/rnaseP-bsu-alignment.eps:6831: UE ==> USE, DUE
data/infernal-1.1.3/easel/documentation/figures/rnaseP-bsu-alignment.eps:6835: bA ==> by, be
data/infernal-1.1.3/easel/documentation/figures/rnaseP-bsu-alignment.eps:6854: nD ==> and, 2nd
data/infernal-1.1.3/easel/documentation/figures/rnaseP-bsu-alignment.eps:6874: teH ==> the
data/infernal-1.1.3/easel/documentation/figures/rnaseP-bsu-alignment.eps:6913: Te ==> The, be, we
data/infernal-1.1.3/easel/documentation/figures/rnaseP-bsu-alignment.eps:6970: fo ==> of, for
data/infernal-1.1.3/easel/documentation/figures/rnaseP-bsu-alignment.eps:7062: nD ==> and, 2nd
data/infernal-1.1.3/easel/documentation/figures/rnaseP-bsu-alignment.eps:7072: ND ==> AND, 2ND
data/infernal-1.1.3/easel/documentation/figures/rnaseP-bsu-alignment.eps:7096: AnE ==> and
data/infernal-1.1.3/easel/documentation/figures/rnaseP-bsu-alignment.eps:7147: OT ==> TO, OF, OR
data/infernal-1.1.3/easel/documentation/figures/rnaseP-bsu-alignment.eps:7153: nd ==> and, 2nd
data/infernal-1.1.3/easel/documentation/figures/rnaseP-bsu-alignment.eps:7153: TYE ==> TYPE, TIE
data/infernal-1.1.3/easel/documentation/figures/rnaseP-bsu-alignment.eps:7214: UE ==> USE, DUE
data/infernal-1.1.3/easel/documentation/figures/rnaseP-bsu-alignment.eps:7259: ba ==> by, be
data/infernal-1.1.3/easel/documentation/figures/rnaseP-bsu-alignment.eps:7281: iHS ==> his
data/infernal-1.1.3/easel/documentation/figures/rnaseP-bsu-alignment.eps:7320: Ot ==> To, of, or
data/infernal-1.1.3/easel/documentation/figures/rnaseP-bsu-alignment.eps:7345: Ue ==> Use, due
data/infernal-1.1.3/easel/documentation/figures/rnaseP-bsu-alignment.eps:7378: Ue ==> Use, due
data/infernal-1.1.3/easel/documentation/figures/rnaseP-bsu-alignment.eps:7406: FO ==> OF, FOR
data/infernal-1.1.3/easel/documentation/figures/rnaseP-bsu-alignment.eps:7412: TBe ==> the
data/infernal-1.1.3/easel/documentation/figures/rnaseP-bsu-alignment.eps:7430: UE ==> USE, DUE
data/infernal-1.1.3/easel/documentation/figures/rnaseP-bsu-alignment.eps:7492: nd ==> and, 2nd
data/infernal-1.1.3/easel/documentation/figures/rnaseP-bsu-alignment.eps:7536: FO ==> OF, FOR
data/infernal-1.1.3/easel/documentation/figures/rnaseP-bsu-alignment.eps:7568: UE ==> USE, DUE
data/infernal-1.1.3/easel/documentation/figures/rnaseP-bsu-alignment.eps:7600: Fo ==> Of, for
data/infernal-1.1.3/easel/documentation/figures/rnaseP-bsu-alignment.eps:7623: Te ==> The, be, we
data/infernal-1.1.3/easel/documentation/figures/rnaseP-bsu-alignment.eps:7647: Ba ==> By, be
data/infernal-1.1.3/easel/documentation/figures/rnaseP-bsu-alignment.eps:7802: tHs ==> the, this
data/infernal-1.1.3/easel/documentation/figures/rnaseP-bsu-alignment.eps:7807: adn ==> and
data/infernal-1.1.3/easel/documentation/figures/rnaseP-bsu-alignment.eps:7879: Tha ==> Than, that, the
data/infernal-1.1.3/easel/documentation/figures/rnaseP-bsu-alignment.eps:7897: ba ==> by, be
data/infernal-1.1.3/easel/documentation/figures/rnaseP-bsu-alignment.eps:7908: FO ==> OF, FOR
data/infernal-1.1.3/easel/documentation/figures/rnaseP-bsu-alignment.eps:7947: Fo ==> Of, for
data/infernal-1.1.3/easel/documentation/figures/rnaseP-bsu-alignment.eps:7949: fOF ==> for
data/infernal-1.1.3/easel/documentation/figures/rnaseP-bsu-alignment.eps:7953: tE ==> the, be, we
data/infernal-1.1.3/easel/documentation/figures/rnaseP-bsu-alignment.eps:7962: 1nd ==> 1st
data/infernal-1.1.3/easel/documentation/figures/rnaseP-bsu-alignment.eps:7971: TRE ==> TREE
data/infernal-1.1.3/easel/documentation/figures/rnaseP-bsu-alignment.eps:7987: fO ==> of, for
data/infernal-1.1.3/easel/documentation/figures/rnaseP-bsu-alignment.eps:8007: Fo ==> Of, for
data/infernal-1.1.3/easel/documentation/figures/rnaseP-bsu-alignment.eps:8011: Fo ==> Of, for
data/infernal-1.1.3/easel/documentation/figures/rnaseP-bsu-alignment.eps:8028: Ba ==> By, be
data/infernal-1.1.3/easel/documentation/figures/rnaseP-bsu-alignment.eps:8072: uE ==> use, due
data/infernal-1.1.3/easel/documentation/figures/rnaseP-bsu-alignment.eps:8109: TE ==> THE, BE, WE
data/infernal-1.1.3/easel/documentation/figures/rnaseP-bsu-alignment.eps:8121: Ot ==> To, of, or
data/infernal-1.1.3/easel/documentation/figures/rnaseP-bsu-alignment.eps:8135: oLL ==> all, ole, old, olly, oil
data/infernal-1.1.3/easel/documentation/figures/rnaseP-bsu-alignment.eps:8145: ONL ==> ONLY
data/infernal-1.1.3/easel/documentation/figures/rnaseP-bsu-alignment.eps:8151: TEh ==> the
data/infernal-1.1.3/easel/documentation/figures/rnaseP-bsu-alignment.eps:8175: Ot ==> To, of, or
data/infernal-1.1.3/easel/documentation/figures/rnaseP-bsu-alignment.eps:8226: FO ==> OF, FOR
data/infernal-1.1.3/easel/documentation/figures/rnaseP-bsu-alignment.eps:8238: ThS ==> the, this
data/infernal-1.1.3/easel/documentation/figures/rnaseP-bsu-alignment.eps:8270: TrE ==> tree
data/infernal-1.1.3/easel/documentation/figures/rnaseP-bsu-alignment.eps:8292: BA ==> BY, BE
data/infernal-1.1.3/easel/documentation/figures/rnaseP-bsu-alignment.eps:8317: te ==> the, be, we
data/infernal-1.1.3/easel/documentation/figures/rnaseP-bsu-alignment.eps:8335: te ==> the, be, we
data/infernal-1.1.3/easel/documentation/figures/rnaseP-bsu-alignment.eps:8344: nD ==> and, 2nd
data/infernal-1.1.3/easel/documentation/figures/rnaseP-bsu-alignment.eps:8358: uE ==> use, due
data/infernal-1.1.3/easel/documentation/figures/rnaseP-bsu-alignment.eps:8360: Te ==> The, be, we
data/infernal-1.1.3/easel/documentation/figures/rnaseP-bsu-alignment.eps:8361: UE ==> USE, DUE
data/infernal-1.1.3/easel/documentation/figures/rnaseP-bsu-alignment.eps:8367: aCN ==> can, acne
data/infernal-1.1.3/easel/documentation/figures/rnaseP-bsu-alignment.eps:8376: nD ==> and, 2nd
data/infernal-1.1.3/easel/documentation/figures/rnaseP-bsu-alignment.eps:8386: Fo ==> Of, for
data/infernal-1.1.3/easel/documentation/figures/rnaseP-bsu-alignment.eps:8394: loD ==> load
data/infernal-1.1.3/easel/documentation/figures/rnaseP-bsu-alignment.eps:8405: ot ==> to, of, or
data/infernal-1.1.3/easel/documentation/figures/rnaseP-bsu-alignment.eps:8426: fO ==> of, for
data/infernal-1.1.3/easel/documentation/figures/rnaseP-bsu-alignment.eps:8494: UE ==> USE, DUE
data/infernal-1.1.3/easel/documentation/figures/rnaseP-bsu-alignment.eps:8516: egE ==> edge
data/infernal-1.1.3/easel/documentation/figures/rnaseP-bsu-alignment.eps:8530: UE ==> USE, DUE
data/infernal-1.1.3/easel/documentation/figures/rnaseP-bsu-alignment.eps:8560: YSE ==> YES, USE, NYSE
data/infernal-1.1.3/easel/documentation/figures/rnaseP-bsu-alignment.eps:8592: Nd ==> And, 2nd
data/infernal-1.1.3/easel/documentation/figures/rnaseP-bsu-alignment.eps:8599: oT ==> to, of, or
data/infernal-1.1.3/easel/documentation/figures/rnaseP-bsu-alignment.eps:8613: OT ==> TO, OF, OR
data/infernal-1.1.3/easel/documentation/figures/rnaseP-bsu-alignment.eps:8678: Nd ==> And, 2nd
data/infernal-1.1.3/easel/documentation/figures/rnaseP-bsu-alignment.eps:8730: hEl ==> help, hell, heal
data/infernal-1.1.3/easel/documentation/figures/rnaseP-bsu-alignment.eps:8799: bA ==> by, be
data/infernal-1.1.3/easel/documentation/figures/rnaseP-bsu-alignment.eps:8808: seH ==> she
data/infernal-1.1.3/easel/documentation/figures/rnaseP-bsu-alignment.eps:8816: Ot ==> To, of, or
data/infernal-1.1.3/easel/documentation/figures/rnaseP-bsu-alignment.eps:8830: ue ==> use, due
data/infernal-1.1.3/easel/documentation/figures/rnaseP-bsu-alignment.eps:8900: nD ==> and, 2nd
data/infernal-1.1.3/easel/documentation/figures/rnaseP-bsu-alignment.eps:8925: haA ==> has
data/infernal-1.1.3/easel/documentation/figures/rnaseP-bsu-alignment.eps:8961: bA ==> by, be
data/infernal-1.1.3/easel/documentation/figures/rnaseP-bsu-alignment.eps:8962: Ot ==> To, of, or
data/infernal-1.1.3/easel/documentation/figures/rnaseP-bsu-alignment.eps:8965: ba ==> by, be
data/infernal-1.1.3/easel/documentation/figures/rnaseP-bsu-alignment.eps:8968: Ba ==> By, be
data/infernal-1.1.3/easel/documentation/figures/rnaseP-bsu-alignment.eps:9039: nD ==> and, 2nd
data/infernal-1.1.3/easel/documentation/figures/rnaseP-bsu-alignment.eps:9062: fro ==> for, from
data/infernal-1.1.3/easel/documentation/figures/rnaseP-bsu-alignment.eps:9072: uE ==> use, due
data/infernal-1.1.3/easel/documentation/figures/rnaseP-bsu-alignment.eps:9090: DaA ==> data
data/infernal-1.1.3/easel/documentation/figures/rnaseP-bsu-alignment.eps:9098: tHi ==> the, this
data/infernal-1.1.3/easel/documentation/figures/rnaseP-bsu-alignment.eps:9125: fo ==> of, for
data/infernal-1.1.3/easel/documentation/figures/rnaseP-bsu-alignment.eps:9155: ONY ==> ONLY
data/infernal-1.1.3/easel/documentation/figures/rnaseP-bsu-alignment.eps:9169: Te ==> The, be, we
data/infernal-1.1.3/easel/documentation/figures/rnaseP-bsu-alignment.eps:9174: te ==> the, be, we
data/infernal-1.1.3/easel/documentation/figures/rnaseP-bsu-alignment.eps:9189: FO ==> OF, FOR
data/infernal-1.1.3/easel/documentation/figures/rnaseP-bsu-alignment.eps:9206: Te ==> The, be, we
data/infernal-1.1.3/easel/documentation/figures/rnaseP-bsu-alignment.eps:9253: ba ==> by, be
data/infernal-1.1.3/easel/documentation/figures/rnaseP-bsu-alignment.eps:9312: FO ==> OF, FOR
data/infernal-1.1.3/easel/documentation/figures/rnaseP-bsu-alignment.eps:9320: nD ==> and, 2nd
data/infernal-1.1.3/easel/documentation/figures/rnaseP-bsu-alignment.eps:9332: te ==> the, be, we
data/infernal-1.1.3/easel/documentation/figures/rnaseP-bsu-alignment.eps:9375: aFe ==> safe
data/infernal-1.1.3/easel/documentation/figures/rnaseP-bsu-alignment.eps:9394: Ue ==> Use, due
data/infernal-1.1.3/easel/documentation/figures/rnaseP-bsu-alignment.eps:9504: tE ==> the, be, we
data/infernal-1.1.3/easel/documentation/figures/rnaseP-bsu-alignment.eps:9556: Fo ==> Of, for
data/infernal-1.1.3/easel/documentation/figures/rnaseP-bsu-alignment.eps:9561: FO ==> OF, FOR
data/infernal-1.1.3/easel/documentation/figures/rnaseP-bsu-alignment.eps:9565: Te ==> The, be, we
data/infernal-1.1.3/easel/documentation/figures/rnaseP-bsu-alignment.eps:9573: UE ==> USE, DUE
data/infernal-1.1.3/easel/documentation/figures/rnaseP-bsu-alignment.eps:9593: TE ==> THE, BE, WE
data/infernal-1.1.3/easel/documentation/figures/rnaseP-bsu-alignment.eps:9600: Ot ==> To, of, or
data/infernal-1.1.3/easel/documentation/figures/rnaseP-bsu-alignment.eps:9626: te ==> the, be, we
data/infernal-1.1.3/easel/documentation/figures/rnaseP-bsu-alignment.eps:9646: Nd ==> And, 2nd
data/infernal-1.1.3/easel/documentation/figures/rnaseP-bsu-alignment.eps:9675: OT ==> TO, OF, OR
data/infernal-1.1.3/easel/documentation/figures/rnaseP-bsu-alignment.eps:9705: Fo ==> Of, for
data/infernal-1.1.3/easel/documentation/figures/rnaseP-bsu-alignment.eps:9734: Te ==> The, be, we
data/infernal-1.1.3/easel/documentation/figures/rnaseP-bsu-alignment.eps:9746: TeH ==> the
data/infernal-1.1.3/easel/documentation/figures/rnaseP-bsu-alignment.eps:9780: OT ==> TO, OF, OR
data/infernal-1.1.3/easel/documentation/figures/rnaseP-bsu-alignment.eps:9793: ot ==> to, of, or
data/infernal-1.1.3/easel/documentation/figures/rnaseP-bsu-alignment.eps:9798: anS ==> and
data/infernal-1.1.3/easel/documentation/figures/rnaseP-bsu-alignment.eps:9849: SUh ==> such
data/infernal-1.1.3/easel/documentation/figures/rnaseP-bsu-alignment.eps:9870: Fo ==> Of, for
data/infernal-1.1.3/easel/documentation/figures/rnaseP-bsu-alignment.eps:9879: YhE ==> the
data/infernal-1.1.3/easel/documentation/figures/rnaseP-bsu-alignment.eps:9880: Onl ==> Only
data/infernal-1.1.3/easel/documentation/figures/rnaseP-bsu-alignment.eps:9881: te ==> the, be, we
data/infernal-1.1.3/easel/documentation/figures/rnaseP-bsu-alignment.eps:9886: Tht ==> The, that
data/infernal-1.1.3/easel/documentation/figures/rnaseP-bsu-alignment.eps:9944: OT ==> TO, OF, OR
data/infernal-1.1.3/easel/documentation/figures/rnaseP-bsu-alignment.eps:9950: lod ==> load
data/infernal-1.1.3/easel/documentation/figures/rnaseP-bsu-alignment.eps:9954: THiRS ==> third, thirst
data/infernal-1.1.3/easel/documentation/figures/rnaseP-bsu-alignment.eps:9975: fo ==> of, for
data/infernal-1.1.3/easel/documentation/figures/rnaseP-bsu-alignment.eps:10002: fO ==> of, for
data/infernal-1.1.3/easel/documentation/figures/rnaseP-bsu-alignment.eps:10012: nD ==> and, 2nd
data/infernal-1.1.3/easel/documentation/figures/rnaseP-bsu-alignment.eps:10015: Nd ==> And, 2nd
data/infernal-1.1.3/easel/documentation/figures/rnaseP-bsu-alignment.eps:10021: OLL ==> ALL, OLE, OLD, OLLY, OIL
data/infernal-1.1.3/easel/documentation/figures/rnaseP-bsu-alignment.eps:10065: nD ==> and, 2nd
data/infernal-1.1.3/easel/documentation/figures/rnaseP-bsu-alignment.eps:10080: tYe ==> type, tie
data/infernal-1.1.3/easel/documentation/figures/rnaseP-bsu-alignment.eps:10083: neD ==> need
data/infernal-1.1.3/easel/documentation/figures/rnaseP-bsu-alignment.eps:10085: Fo ==> Of, for
data/infernal-1.1.3/easel/documentation/figures/rnaseP-bsu-alignment.eps:10092: nD ==> and, 2nd
data/infernal-1.1.3/easel/documentation/figures/rnaseP-bsu-alignment.eps:10177: FO ==> OF, FOR
data/infernal-1.1.3/easel/documentation/figures/rnaseP-bsu-alignment.eps:10214: elES ==> else
data/infernal-1.1.3/easel/documentation/figures/rnaseP-bsu-alignment.eps:10244: ND ==> AND, 2ND
data/infernal-1.1.3/easel/documentation/figures/rnaseP-bsu-alignment.eps:10275: Ba ==> By, be
data/infernal-1.1.3/easel/documentation/figures/rnaseP-bsu-alignment.eps:10286: DAa ==> data
data/infernal-1.1.3/easel/documentation/figures/rnaseP-bsu-alignment.eps:10319: HVe ==> have
data/infernal-1.1.3/easel/documentation/figures/rnaseP-bsu-alignment.eps:10416: Nd ==> And, 2nd
data/infernal-1.1.3/easel/documentation/figures/rnaseP-bsu-alignment.eps:10417: Te ==> The, be, we
data/infernal-1.1.3/easel/documentation/figures/rnaseP-bsu-alignment.eps:10438: fof ==> for
data/infernal-1.1.3/easel/documentation/figures/rnaseP-bsu-alignment.eps:10443: Ba ==> By, be
data/infernal-1.1.3/easel/documentation/figures/rnaseP-bsu-alignment.eps:10452: nd ==> and, 2nd
data/infernal-1.1.3/easel/documentation/figures/rnaseP-bsu-alignment.eps:10456: fO ==> of, for
data/infernal-1.1.3/easel/documentation/figures/rnaseP-bsu-alignment.eps:10468: Wqs ==> Was
data/infernal-1.1.3/easel/documentation/figures/rnaseP-bsu-alignment.eps:10480: FoT ==> for, fit, dot, rot, cot, got, tot, fog
data/infernal-1.1.3/easel/documentation/figures/rnaseP-bsu-alignment.eps:10502: TYE ==> TYPE, TIE
data/infernal-1.1.3/easel/documentation/figures/rnaseP-bsu-alignment.eps:10518: bA ==> by, be
data/infernal-1.1.3/easel/documentation/figures/rnaseP-bsu-alignment.eps:10568: oND ==> one
data/infernal-1.1.3/easel/documentation/figures/rnaseP-bsu-alignment.eps:10615: fo ==> of, for
data/infernal-1.1.3/easel/documentation/figures/rnaseP-bsu-alignment.eps:10640: aLs ==> also
data/infernal-1.1.3/easel/documentation/figures/rnaseP-bsu-alignment.eps:10706: oT ==> to, of, or
data/infernal-1.1.3/easel/documentation/figures/rnaseP-bsu-alignment.eps:10714: nd ==> and, 2nd
data/infernal-1.1.3/easel/documentation/figures/rnaseP-bsu-alignment.eps:10723: Afe ==> Safe
data/infernal-1.1.3/easel/documentation/figures/rnaseP-bsu-alignment.eps:10728: oT ==> to, of, or
data/infernal-1.1.3/easel/documentation/figures/rnaseP-bsu-alignment.eps:10739: FO ==> OF, FOR
data/infernal-1.1.3/easel/documentation/figures/rnaseP-bsu-alignment.eps:10754: OFO ==> OF
data/infernal-1.1.3/easel/documentation/figures/rnaseP-bsu-alignment.eps:10778: BA ==> BY, BE
data/infernal-1.1.3/easel/documentation/figures/rnaseP-bsu-alignment.eps:10828: nd ==> and, 2nd
data/infernal-1.1.3/easel/documentation/figures/rnaseP-bsu-alignment.eps:10870: ue ==> use, due
data/infernal-1.1.3/easel/documentation/figures/rnaseP-bsu-alignment.eps:10895: olY ==> only
data/infernal-1.1.3/easel/documentation/figures/rnaseP-bsu-alignment.eps:10920: BA ==> BY, BE
data/infernal-1.1.3/easel/documentation/figures/rnaseP-bsu-alignment.eps:10923: FO ==> OF, FOR
data/infernal-1.1.3/easel/documentation/figures/rnaseP-bsu-alignment.eps:10946: hSI ==> his
data/infernal-1.1.3/easel/documentation/figures/rnaseP-bsu-alignment.eps:11000: bA ==> by, be
data/infernal-1.1.3/easel/documentation/figures/rnaseP-bsu-alignment.eps:11064: 2ST ==> 2ND
data/infernal-1.1.3/easel/documentation/figures/rnaseP-bsu-alignment.eps:11083: jus ==> just
data/infernal-1.1.3/easel/documentation/figures/rnaseP-bsu-alignment.eps:11084: BA ==> BY, BE
data/infernal-1.1.3/easel/documentation/figures/rnaseP-bsu-alignment.eps:11130: eDE ==> edge
data/infernal-1.1.3/easel/documentation/figures/rnaseP-bsu-alignment.eps:11156: Whn ==> When
data/infernal-1.1.3/easel/documentation/figures/rnaseP-bsu-alignment.eps:11208: TE ==> THE, BE, WE
data/infernal-1.1.3/easel/documentation/figures/rnaseP-bsu-alignment.eps:11226: fO ==> of, for
data/infernal-1.1.3/easel/documentation/figures/rnaseP-bsu-alignment.eps:11261: FO ==> OF, FOR
data/infernal-1.1.3/easel/documentation/figures/rnaseP-bsu-alignment.eps:11274: TE ==> THE, BE, WE
data/infernal-1.1.3/easel/documentation/figures/rnaseP-bsu-alignment.eps:11291: MYU ==> MY
data/infernal-1.1.3/easel/documentation/figures/rnaseP-bsu-alignment.eps:11309: OT ==> TO, OF, OR
data/infernal-1.1.3/easel/documentation/figures/rnaseP-bsu-alignment.eps:11338: FO ==> OF, FOR
data/infernal-1.1.3/easel/documentation/figures/rnaseP-bsu-alignment.eps:11339: ba ==> by, be
data/infernal-1.1.3/easel/documentation/figures/rnaseP-bsu-alignment.eps:11342: Fo ==> Of, for
data/infernal-1.1.3/easel/documentation/figures/rnaseP-bsu-alignment.eps:11343: foT ==> for, fit, dot, rot, cot, got, tot, fog
data/infernal-1.1.3/easel/documentation/figures/rnaseP-bsu-alignment.eps:11385: oT ==> to, of, or
data/infernal-1.1.3/easel/documentation/figures/rnaseP-bsu-alignment.eps:11391: uE ==> use, due
data/infernal-1.1.3/easel/documentation/figures/rnaseP-bsu-alignment.eps:11396: nD ==> and, 2nd
data/infernal-1.1.3/easel/formats/uniprot:41: Wan ==> Want
data/infernal-1.1.3/easel/formats/uniprot:92: Wan ==> Want
data/infernal-1.1.3/easel/formats/wag.dat:25: Ser ==> Set
data/infernal-1.1.3/easel/miniapps/esl-alimanip.c:1040: occurence ==> occurrence
data/infernal-1.1.3/easel/miniapps/esl-alimanip.c:1282: nd ==> and, 2nd
data/infernal-1.1.3/easel/miniapps/esl-alimanip.c:1291: nd ==> and, 2nd
data/infernal-1.1.3/easel/miniapps/esl-alimanip.c:1293: nd ==> and, 2nd
data/infernal-1.1.3/easel/miniapps/esl-alimanip.c:1294: nd ==> and, 2nd
data/infernal-1.1.3/easel/miniapps/esl-alimanip.c:1295: nd ==> and, 2nd
data/infernal-1.1.3/easel/miniapps/esl-alimanip.c:1297: nd ==> and, 2nd
data/infernal-1.1.3/easel/miniapps/esl-alimanip.c:1298: nd ==> and, 2nd
data/infernal-1.1.3/easel/miniapps/esl-alimanip.c:1965: indes ==> index
data/infernal-1.1.3/easel/miniapps/esl-alimanip.c:2023: indes ==> index
data/infernal-1.1.3/easel/miniapps/esl-alimanip.c:2195: largets ==> largest, targets
data/infernal-1.1.3/easel/miniapps/esl-alimanip.c:2298: Largets ==> Largest, targets
data/infernal-1.1.3/easel/miniapps/esl-alimask.c:172: seperated ==> separated
data/infernal-1.1.3/easel/miniapps/esl-alimerge.c:46: Ouput ==> Output
data/infernal-1.1.3/easel/miniapps/esl-alimerge.c:400: orignal ==> original
data/infernal-1.1.3/easel/miniapps/esl-alimerge.c:848: aligments ==> alignments
data/infernal-1.1.3/easel/miniapps/esl-alimerge.c:896: dealign ==> dealing
data/infernal-1.1.3/easel/miniapps/esl-alimerge.c:907: dealign ==> dealing
data/infernal-1.1.3/easel/miniapps/esl-alimerge.c:943: dealign ==> dealing
data/infernal-1.1.3/easel/miniapps/esl-alimerge.c:953: dealign ==> dealing
data/infernal-1.1.3/easel/miniapps/esl-alimerge.c:989: dealign ==> dealing
data/infernal-1.1.3/easel/miniapps/esl-alimerge.c:999: dealign ==> dealing
data/infernal-1.1.3/easel/miniapps/esl-alimerge.c:1033: dealign ==> dealing
data/infernal-1.1.3/easel/miniapps/esl-alimerge.c:1043: dealign ==> dealing
data/infernal-1.1.3/easel/miniapps/esl-alimerge.c:1074: dealign ==> dealing
data/infernal-1.1.3/easel/miniapps/esl-alimerge.c:1079: dealign ==> dealing
data/infernal-1.1.3/easel/miniapps/esl-alimerge.man.in:44: accomodated ==> accommodated
data/infernal-1.1.3/easel/miniapps/esl-construct.c:83: outputing ==> outputting
data/infernal-1.1.3/easel/miniapps/esl-construct.itest.pl:108: stucture ==> structure
data/infernal-1.1.3/easel/miniapps/esl-construct.itest.pl:113: stucture ==> structure
data/infernal-1.1.3/easel/miniapps/esl-construct.itest.pl:114: stucture ==> structure
data/infernal-1.1.3/easel/miniapps/esl-construct.itest.pl:119: stucture ==> structure
data/infernal-1.1.3/easel/miniapps/esl-construct.itest.pl:124: stucture ==> structure
data/infernal-1.1.3/easel/miniapps/esl-construct.itest.pl:125: stucture ==> structure
data/infernal-1.1.3/easel/miniapps/esl-construct.itest.pl:130: stucture ==> structure
data/infernal-1.1.3/easel/miniapps/esl-construct.itest.pl:135: stucture ==> structure
data/infernal-1.1.3/easel/miniapps/esl-construct.itest.pl:140: stucture ==> structure
data/infernal-1.1.3/easel/miniapps/esl-construct.itest.pl:145: stucture ==> structure
data/infernal-1.1.3/easel/miniapps/esl-construct.itest.pl:146: stucture ==> structure
data/infernal-1.1.3/easel/miniapps/esl-construct.itest.pl:151: stucture ==> structure
data/infernal-1.1.3/easel/miniapps/esl-construct.itest.pl:152: stucture ==> structure
data/infernal-1.1.3/easel/miniapps/esl-ssdraw.c:554: occuring ==> occurring
data/infernal-1.1.3/easel/miniapps/esl-ssdraw.c:3290: eigth ==> eighth, eight
data/infernal-1.1.3/easel/miniapps/esl-ssdraw.c:4077: defintion ==> definition
data/infernal-1.1.3/easel/miniapps/esl-ssdraw.c:6512: analagous ==> analogous
data/infernal-1.1.3/easel/miniapps/esl-ssdraw.c:6622: occured ==> occurred
data/infernal-1.1.3/easel/miniapps/esl-ssdraw.man.in:55: probabilites ==> probabilities
data/infernal-1.1.3/easel/miniapps/esl-ssdraw.man.in:309: specfies ==> specifies
data/infernal-1.1.3/easel/testsuite/parse_test_results.py:37: expectes ==> expects
data/infernal-1.1.3/easel/testsuite/parse_test_results.py:79: expectes ==> expects
data/infernal-1.1.3/hmmer/config.guess:362: Ake ==> Ache
data/infernal-1.1.3/hmmer/config.sub:254: ba ==> by, be
data/infernal-1.1.3/hmmer/config.sub:851: msdos ==> ms-dos
data/infernal-1.1.3/hmmer/documentation/man/jackhmmer.man.in:495: subsitution ==> substitution
data/infernal-1.1.3/hmmer/documentation/man/alimask.man.in:222: subsitution ==> substitution
data/infernal-1.1.3/hmmer/documentation/man/hmmbuild.man.in:180: subsitution ==> substitution
data/infernal-1.1.3/hmmer/documentation/userguide/formats.tex:221: ALPH ==> ALPHA
data/infernal-1.1.3/hmmer/documentation/userguide/formats.tex:820: sequnces ==> sequences
data/infernal-1.1.3/hmmer/documentation/userguide/formats.tex:858: seach ==> search
data/infernal-1.1.3/hmmer/documentation/userguide/formats.tex:860: acheived ==> achieved
data/infernal-1.1.3/hmmer/documentation/userguide/introduction.tex:80: subsitution ==> substitution
data/infernal-1.1.3/hmmer/documentation/userguide/tufte-common.def:309: Heros ==> Heroes
data/infernal-1.1.3/hmmer/documentation/userguide/tufte-common.def:839: trailling ==> trailing
data/infernal-1.1.3/hmmer/documentation/userguide/tufte-common.def:1233: overriden ==> overridden
data/infernal-1.1.3/hmmer/documentation/userguide/tutorial.tex:401: accidentially ==> accidentally
data/infernal-1.1.3/hmmer/documentation/userguide/tutorial.tex:614: inferrable ==> inferable
data/infernal-1.1.3/hmmer/documentation/userguide/tutorial.tex:1179: accomodate ==> accommodate
data/infernal-1.1.3/hmmer/documentation/userguide/tutorial.tex:1206: accomodate ==> accommodate
data/infernal-1.1.3/hmmer/documentation/userguide/inclusions/hmmbuild-globins.out2:4: ALPH ==> ALPHA
data/infernal-1.1.3/hmmer/libdivsufsort/README:74: sais ==> says
data/infernal-1.1.3/hmmer/libdivsufsort/README:74: sais ==> says
data/infernal-1.1.3/hmmer/libdivsufsort/README:88: sais ==> says
data/infernal-1.1.3/hmmer/libdivsufsort/README:102: sais ==> says
data/infernal-1.1.3/hmmer/libdivsufsort/README:119: sais ==> says
data/infernal-1.1.3/hmmer/libdivsufsort/README:134: sais ==> says
data/infernal-1.1.3/hmmer/profmark/create-profmark.c:359: nin ==> inn, min, bin, nine
data/infernal-1.1.3/hmmer/profmark/create-profmark.c:371: nin ==> inn, min, bin, nine
data/infernal-1.1.3/hmmer/profmark/create-profmark.c:372: nin ==> inn, min, bin, nine
data/infernal-1.1.3/hmmer/profmark/create-profmark.c:373: nin ==> inn, min, bin, nine
data/infernal-1.1.3/hmmer/profmark/create-profmark.c:382: nin ==> inn, min, bin, nine
data/infernal-1.1.3/hmmer/profmark/create-profmark.c:395: nin ==> inn, min, bin, nine
data/infernal-1.1.3/hmmer/profmark/create-profmark.c:395: nin ==> inn, min, bin, nine
data/infernal-1.1.3/hmmer/profmark/create-profmark.c:397: nin ==> inn, min, bin, nine
data/infernal-1.1.3/hmmer/profmark/create-profmark.c:400: nin ==> inn, min, bin, nine
data/infernal-1.1.3/hmmer/profmark/create-profmark.c:413: nin ==> inn, min, bin, nine
data/infernal-1.1.3/hmmer/profmark/create-profmark.c:423: nin ==> inn, min, bin, nine
data/infernal-1.1.3/hmmer/profmark/create-profmark.c:423: nin ==> inn, min, bin, nine
data/infernal-1.1.3/hmmer/src/generic_msv.c:40: lod ==> load
data/infernal-1.1.3/hmmer/src/generic_null2.c:341: lod ==> load
data/infernal-1.1.3/hmmer/src/generic_viterbi.c:51: lod ==> load
data/infernal-1.1.3/hmmer/src/generic_viterbi.c:52: lod ==> load
data/infernal-1.1.3/hmmer/src/generic_viterbi.c:59: lod ==> load
data/infernal-1.1.3/hmmer/src/h2_io.c:73: ALPH ==> ALPHA
data/infernal-1.1.3/hmmer/src/h2_io.c:74: ALPH ==> ALPHA
data/infernal-1.1.3/hmmer/src/h2_io.c:75: ALPH ==> ALPHA
data/infernal-1.1.3/hmmer/src/hmmbuild.c:149: alignemnt ==> alignment
data/infernal-1.1.3/hmmer/src/hmmc2.c:329: writen ==> written
data/infernal-1.1.3/hmmer/src/hmmc2.c:414: writen ==> written
data/infernal-1.1.3/hmmer/src/hmmd_search_status.c:44: requried ==> required
data/infernal-1.1.3/hmmer/src/hmmdmstr.c:149: writen ==> written
data/infernal-1.1.3/hmmer/src/hmmdmstr.c:153: writen ==> written
data/infernal-1.1.3/hmmer/src/hmmdmstr.c:885: writen ==> written
data/infernal-1.1.3/hmmer/src/hmmdmstr.c:893: writen ==> written
data/infernal-1.1.3/hmmer/src/hmmdmstr.c:901: writen ==> written
data/infernal-1.1.3/hmmer/src/hmmdmstr.c:996: parms ==> params, prams
data/infernal-1.1.3/hmmer/src/hmmdmstr.c:1028: parms ==> params, prams
data/infernal-1.1.3/hmmer/src/hmmdmstr.c:1029: parms ==> params, prams
data/infernal-1.1.3/hmmer/src/hmmdmstr.c:1049: parms ==> params, prams
data/infernal-1.1.3/hmmer/src/hmmdmstr.c:1077: parms ==> params, prams
data/infernal-1.1.3/hmmer/src/hmmdmstr.c:1216: occured ==> occurred
data/infernal-1.1.3/hmmer/src/hmmdmstr.c:1227: parms ==> params, prams
data/infernal-1.1.3/hmmer/src/hmmdmstr.c:1340: parms ==> params, prams
data/infernal-1.1.3/hmmer/src/hmmdmstr.c:1441: incase ==> in case
data/infernal-1.1.3/hmmer/src/hmmdmstr.c:1502: writen ==> written
data/infernal-1.1.3/hmmer/src/hmmdmstr.c:1542: writen ==> written
data/infernal-1.1.3/hmmer/src/hmmdmstr.c:1551: writen ==> written
data/infernal-1.1.3/hmmer/src/hmmdmstr.c:1723: writen ==> written
data/infernal-1.1.3/hmmer/src/hmmdmstr.c:1873: incase ==> in case
data/infernal-1.1.3/hmmer/src/hmmdmstr_shard.c:169: writen ==> written
data/infernal-1.1.3/hmmer/src/hmmdmstr_shard.c:173: writen ==> written
data/infernal-1.1.3/hmmer/src/hmmdmstr_shard.c:924: writen ==> written
data/infernal-1.1.3/hmmer/src/hmmdmstr_shard.c:932: writen ==> written
data/infernal-1.1.3/hmmer/src/hmmdmstr_shard.c:940: writen ==> written
data/infernal-1.1.3/hmmer/src/hmmdmstr_shard.c:1035: parms ==> params, prams
data/infernal-1.1.3/hmmer/src/hmmdmstr_shard.c:1067: parms ==> params, prams
data/infernal-1.1.3/hmmer/src/hmmdmstr_shard.c:1068: parms ==> params, prams
data/infernal-1.1.3/hmmer/src/hmmdmstr_shard.c:1088: parms ==> params, prams
data/infernal-1.1.3/hmmer/src/hmmdmstr_shard.c:1116: parms ==> params, prams
data/infernal-1.1.3/hmmer/src/hmmdmstr_shard.c:1255: occured ==> occurred
data/infernal-1.1.3/hmmer/src/hmmdmstr_shard.c:1266: parms ==> params, prams
data/infernal-1.1.3/hmmer/src/hmmdmstr_shard.c:1379: parms ==> params, prams
data/infernal-1.1.3/hmmer/src/hmmdmstr_shard.c:1480: incase ==> in case
data/infernal-1.1.3/hmmer/src/hmmdmstr_shard.c:1542: writen ==> written
data/infernal-1.1.3/hmmer/src/hmmdmstr_shard.c:1582: writen ==> written
data/infernal-1.1.3/hmmer/src/hmmdmstr_shard.c:1591: writen ==> written
data/infernal-1.1.3/hmmer/src/hmmdmstr_shard.c:1765: writen ==> written
data/infernal-1.1.3/hmmer/src/hmmdmstr_shard.c:1933: incase ==> in case
data/infernal-1.1.3/hmmer/src/hmmdutils.c:1: deamon ==> daemon
data/infernal-1.1.3/hmmer/src/hmmdutils.c:1: searchs ==> searches
data/infernal-1.1.3/hmmer/src/hmmdutils.c:113: writen ==> written
data/infernal-1.1.3/hmmer/src/hmmdwrkr.c:453: writen ==> written
data/infernal-1.1.3/hmmer/src/hmmdwrkr.c:536: writen ==> written
data/infernal-1.1.3/hmmer/src/hmmdwrkr.c:832: writen ==> written
data/infernal-1.1.3/hmmer/src/hmmdwrkr.c:835: writen ==> written
data/infernal-1.1.3/hmmer/src/hmmdwrkr_shard.c:480: writen ==> written
data/infernal-1.1.3/hmmer/src/hmmdwrkr_shard.c:565: writen ==> written
data/infernal-1.1.3/hmmer/src/hmmdwrkr_shard.c:868: writen ==> written
data/infernal-1.1.3/hmmer/src/hmmdwrkr_shard.c:871: writen ==> written
data/infernal-1.1.3/hmmer/src/hmmer.h:913: alph ==> alpha
data/infernal-1.1.3/hmmer/src/hmmerfm-exactmatch.c:94: alph ==> alpha
data/infernal-1.1.3/hmmer/src/hmmerfm-exactmatch.c:98: alph ==> alpha
data/infernal-1.1.3/hmmer/src/hmmerfm-exactmatch.c:99: alph ==> alpha
data/infernal-1.1.3/hmmer/src/hmmerfm-exactmatch.c:123: alph ==> alpha
data/infernal-1.1.3/hmmer/src/hmmlogo.c:162: defaul ==> default
data/infernal-1.1.3/hmmer/src/hmmpgmd.h:101: writen ==> written
data/infernal-1.1.3/hmmer/src/hmmpgmd_client_example.pl:178: sturcture ==> structure
data/infernal-1.1.3/hmmer/src/hmmpgmd_client_example.pl:190: entirity ==> entirety
data/infernal-1.1.3/hmmer/src/hmmpgmd_client_example.pl:235: sturcture ==> structure
data/infernal-1.1.3/hmmer/src/hmmpgmd_client_example.pl:237: entirity ==> entirety
data/infernal-1.1.3/hmmer/src/hmmpgmd_client_example.pl:245: Ths ==> The, this
data/infernal-1.1.3/hmmer/src/hmmpgmd_client_example.pl:361: aready ==> already
data/infernal-1.1.3/hmmer/src/hmmpgmd_client_example.pl:391: struc ==> struct
data/infernal-1.1.3/hmmer/src/hmmpgmd_client_example.pl:532: Missmatch ==> Mismatch
data/infernal-1.1.3/hmmer/src/hmmpgmd_client_example.pl:532: recieved ==> received
data/infernal-1.1.3/hmmer/src/hmmpgmd_client_example.pl:561: uninitalized ==> uninitialized
data/infernal-1.1.3/hmmer/src/itest_brute.c:107: lod ==> load
data/infernal-1.1.3/hmmer/src/itest_brute.c:108: lod ==> load
data/infernal-1.1.3/hmmer/src/itest_brute.c:109: lod ==> load
data/infernal-1.1.3/hmmer/src/itest_brute.c:110: lod ==> load
data/infernal-1.1.3/hmmer/src/itest_brute.c:224: ECT ==> ETC
data/infernal-1.1.3/hmmer/src/itest_brute.c:555: lod ==> load
data/infernal-1.1.3/hmmer/src/logsum.c:397: implemementation ==> implementation
data/infernal-1.1.3/hmmer/src/makehmmerdb.c:15: adjascent ==> adjacent
data/infernal-1.1.3/hmmer/src/makehmmerdb.c:434: alph ==> alpha
data/infernal-1.1.3/hmmer/src/makehmmerdb.c:496: alph ==> alpha
data/infernal-1.1.3/hmmer/src/makehmmerdb.c:602: seqeunce ==> sequence
data/infernal-1.1.3/hmmer/src/makehmmerdb.c:665: alph ==> alpha
data/infernal-1.1.3/hmmer/src/modelconfig.c:39: lod ==> load
data/infernal-1.1.3/hmmer/src/modelconfig.c:903: MkE ==> make
data/infernal-1.1.3/hmmer/src/modelconfig.c:905: MkE ==> make
data/infernal-1.1.3/hmmer/src/modelconfig.c:914: MkE ==> make
data/infernal-1.1.3/hmmer/src/modelstats.c:168: tre ==> tree
data/infernal-1.1.3/hmmer/src/modelstats.c:181: tre ==> tree
data/infernal-1.1.3/hmmer/src/modelstats.c:186: tre ==> tree
data/infernal-1.1.3/hmmer/src/modelstats.c:188: tre ==> tree
data/infernal-1.1.3/hmmer/src/modelstats.c:191: tre ==> tree
data/infernal-1.1.3/hmmer/src/nhmmer.c:361: threshhold ==> threshold
data/infernal-1.1.3/hmmer/src/nhmmscan.c:32: overriden ==> overridden
data/infernal-1.1.3/hmmer/src/p7_alidisplay.c:457: requried ==> required
data/infernal-1.1.3/hmmer/src/p7_alidisplay.c:1197: betweeen ==> between
data/infernal-1.1.3/hmmer/src/p7_alidisplay.c:1281: ECT ==> ETC
data/infernal-1.1.3/hmmer/src/p7_alidisplay.c:1379: nD ==> and, 2nd
data/infernal-1.1.3/hmmer/src/p7_alidisplay.c:1396: nD ==> and, 2nd
data/infernal-1.1.3/hmmer/src/p7_alidisplay.c:1413: nD ==> and, 2nd
data/infernal-1.1.3/hmmer/src/p7_alidisplay.c:1428: nD ==> and, 2nd
data/infernal-1.1.3/hmmer/src/p7_alidisplay.c:1461: nD ==> and, 2nd
data/infernal-1.1.3/hmmer/src/p7_alidisplay.c:1767: nD ==> and, 2nd
data/infernal-1.1.3/hmmer/src/p7_alidisplay.c:1784: nD ==> and, 2nd
data/infernal-1.1.3/hmmer/src/p7_alidisplay.c:1801: nD ==> and, 2nd
data/infernal-1.1.3/hmmer/src/p7_alidisplay.c:1816: nD ==> and, 2nd
data/infernal-1.1.3/hmmer/src/p7_alidisplay.c:1849: nD ==> and, 2nd
data/infernal-1.1.3/hmmer/src/p7_bg.c:345: lod ==> load
data/infernal-1.1.3/hmmer/src/p7_bg.c:413: accordint ==> according
data/infernal-1.1.3/hmmer/src/p7_domain.c:106: requried ==> required
data/infernal-1.1.3/hmmer/src/p7_domain.c:114: strucuture ==> structure
data/infernal-1.1.3/hmmer/src/p7_domain.c:390: prevous ==> previous
data/infernal-1.1.3/hmmer/src/p7_gmxchk.h:52: specificially ==> specifically
data/infernal-1.1.3/hmmer/src/p7_hit.c:145: requried ==> required
data/infernal-1.1.3/hmmer/src/p7_hmmd_search_stats.c:39: requried ==> required
data/infernal-1.1.3/hmmer/src/p7_hmmfile.c:584: ALPH ==> ALPHA
data/infernal-1.1.3/hmmer/src/p7_hmmfile.c:719: inlcuding ==> including
data/infernal-1.1.3/hmmer/src/p7_hmmfile.c:728: ALPH ==> ALPHA
data/infernal-1.1.3/hmmer/src/p7_hmmfile.c:819: ALPH ==> ALPHA
data/infernal-1.1.3/hmmer/src/p7_hmmfile.c:1190: tha ==> than, that, the
data/infernal-1.1.3/hmmer/src/p7_hmmfile.c:1228: tha ==> than, that, the
data/infernal-1.1.3/hmmer/src/p7_hmmfile.c:1366: ALPH ==> ALPHA
data/infernal-1.1.3/hmmer/src/p7_hmmfile.c:1367: ALPH ==> ALPHA
data/infernal-1.1.3/hmmer/src/p7_hmmfile.c:1614: ALPH ==> ALPHA
data/infernal-1.1.3/hmmer/src/p7_hmmfile.c:1820: ALPH ==> ALPHA
data/infernal-1.1.3/hmmer/src/p7_hmmfile.c:1821: ALPH ==> ALPHA
data/infernal-1.1.3/hmmer/src/p7_hmmfile.c:1904: ALPH ==> ALPHA
data/infernal-1.1.3/hmmer/src/p7_hmmfile.c:1990: ALPH ==> ALPHA
data/infernal-1.1.3/hmmer/src/p7_hmmfile.c:2157: currnet ==> current
data/infernal-1.1.3/hmmer/src/p7_hmmfile.c:2157: strng ==> string
data/infernal-1.1.3/hmmer/src/p7_null3.c:246: lod ==> load
data/infernal-1.1.3/hmmer/src/p7_profile.c:38: unintialized ==> uninitialized
data/infernal-1.1.3/hmmer/src/p7_trace.c:858: lod ==> load
data/infernal-1.1.3/hmmer/src/p7_trace.c:864: lod ==> load
data/infernal-1.1.3/hmmer/src/p7_trace.c:867: lod ==> load
data/infernal-1.1.3/hmmer/src/p7_trace.c:875: lod ==> load
data/infernal-1.1.3/hmmer/src/p7_trace.c:1100: expectd ==> expected
data/infernal-1.1.3/hmmer/src/tracealign.c:398: positon ==> position, positron
data/infernal-1.1.3/hmmer/src/emit.c:413: lod ==> load
data/infernal-1.1.3/hmmer/src/fm_alphabet.c:17: cannonical ==> canonical
data/infernal-1.1.3/hmmer/src/fm_alphabet.c:24: alph ==> alpha
data/infernal-1.1.3/hmmer/src/fm_alphabet.c:50: alph ==> alpha
data/infernal-1.1.3/hmmer/src/fm_alphabet.c:60: alph ==> alpha
data/infernal-1.1.3/hmmer/src/fm_alphabet.c:69: alph ==> alpha
data/infernal-1.1.3/hmmer/src/fm_alphabet.c:87: alph ==> alpha
data/infernal-1.1.3/hmmer/src/fm_alphabet.c:94: alph ==> alpha
data/infernal-1.1.3/hmmer/src/fm_alphabet.c:94: alph ==> alpha
data/infernal-1.1.3/hmmer/src/fm_alphabet.c:97: alph ==> alpha
data/infernal-1.1.3/hmmer/src/fm_alphabet.c:122: alph ==> alpha
data/infernal-1.1.3/hmmer/src/fm_alphabet.c:122: alph ==> alpha
data/infernal-1.1.3/hmmer/src/fm_ssv.c:262: alph ==> alpha
data/infernal-1.1.3/hmmer/src/fm_ssv.c:474: alph ==> alpha
data/infernal-1.1.3/hmmer/src/generic_fwdback.c:32: lod ==> load
data/infernal-1.1.3/hmmer/src/generic_fwdback.c:33: lod ==> load
data/infernal-1.1.3/hmmer/src/generic_fwdback.c:43: lod ==> load
data/infernal-1.1.3/hmmer/src/generic_fwdback.c:151: lod ==> load
data/infernal-1.1.3/hmmer/src/generic_fwdback.c:152: lod ==> load
data/infernal-1.1.3/hmmer/src/generic_fwdback.c:159: lod ==> load
data/infernal-1.1.3/hmmer/src/generic_fwdback.c:275: lod ==> load
data/infernal-1.1.3/hmmer/src/generic_fwdback.c:276: lod ==> load
data/infernal-1.1.3/hmmer/src/generic_fwdback.c:283: lod ==> load
data/infernal-1.1.3/hmmer/src/generic_fwdback.c:284: lod ==> load
data/infernal-1.1.3/hmmer/src/generic_fwdback.c:599: lod ==> load
data/infernal-1.1.3/hmmer/src/generic_fwdback_chk.c:119: lod ==> load
data/infernal-1.1.3/hmmer/src/generic_fwdback_chk.c:123: lod ==> load
data/infernal-1.1.3/hmmer/src/p7_tophits.c:942: crossreferences ==> cross-references
data/infernal-1.1.3/hmmer/src/p7_tophits.c:1211: nd ==> and, 2nd
data/infernal-1.1.3/hmmer/src/p7_tophits.c:1292: nd ==> and, 2nd
data/infernal-1.1.3/hmmer/src/p7_tophits.c:1297: nd ==> and, 2nd
data/infernal-1.1.3/hmmer/src/p7_tophits.c:1301: nd ==> and, 2nd
data/infernal-1.1.3/hmmer/src/p7_tophits.c:1325: nd ==> and, 2nd
data/infernal-1.1.3/hmmer/src/p7_tophits.c:1371: nd ==> and, 2nd
data/infernal-1.1.3/hmmer/src/p7_tophits.c:1377: nd ==> and, 2nd
data/infernal-1.1.3/hmmer/src/p7_tophits.c:1380: nd ==> and, 2nd
data/infernal-1.1.3/hmmer/src/p7_tophits.c:1663: nd ==> and, 2nd
data/infernal-1.1.3/hmmer/src/p7_tophits.c:1680: nd ==> and, 2nd
data/infernal-1.1.3/hmmer/src/p7_tophits.c:1684: nd ==> and, 2nd
data/infernal-1.1.3/hmmer/src/p7_tophits.c:1706: nd ==> and, 2nd
data/infernal-1.1.3/hmmer/src/p7_tophits.c:1747: formated ==> formatted
data/infernal-1.1.3/hmmer/src/impl_sse/p7_oprofile.c:397: mutiple ==> multiple
data/infernal-1.1.3/hmmer/src/impl_sse/p7_oprofile.c:908: superceded ==> superseded
data/infernal-1.1.3/hmmer/src/impl_sse/ssvfilter.c:227: BA ==> BY, BE
data/infernal-1.1.3/hmmer/src/impl_sse/ssvfilter.c:227: BA ==> BY, BE
data/infernal-1.1.3/hmmer/src/impl_sse/ssvfilter.c:227: BA ==> BY, BE
data/infernal-1.1.3/hmmer/src/impl_sse/ssvfilter.c:227: BA ==> BY, BE
data/infernal-1.1.3/hmmer/src/impl_sse/ssvfilter.c:227: BA ==> BY, BE
data/infernal-1.1.3/hmmer/src/impl_sse/ssvfilter.c:227: BA ==> BY, BE
data/infernal-1.1.3/hmmer/src/impl_sse/ssvfilter.c:227: BA ==> BY, BE
data/infernal-1.1.3/hmmer/src/impl_sse/ssvfilter.c:228: BA ==> BY, BE
data/infernal-1.1.3/hmmer/src/impl_sse/ssvfilter.c:228: BA ==> BY, BE
data/infernal-1.1.3/hmmer/src/impl_sse/ssvfilter.c:228: BA ==> BY, BE
data/infernal-1.1.3/hmmer/src/impl_sse/ssvfilter.c:228: BA ==> BY, BE
data/infernal-1.1.3/hmmer/src/impl_sse/ssvfilter.c:228: BA ==> BY, BE
data/infernal-1.1.3/hmmer/src/impl_sse/ssvfilter.c:228: BA ==> BY, BE
data/infernal-1.1.3/hmmer/src/impl_sse/ssvfilter.c:228: BA ==> BY, BE
data/infernal-1.1.3/hmmer/src/impl_sse/ssvfilter.c:229: BA ==> BY, BE
data/infernal-1.1.3/hmmer/src/impl_sse/ssvfilter.c:229: BA ==> BY, BE
data/infernal-1.1.3/hmmer/src/impl_sse/ssvfilter.c:229: BA ==> BY, BE
data/infernal-1.1.3/hmmer/src/impl_sse/ssvfilter.c:229: BA ==> BY, BE
data/infernal-1.1.3/hmmer/src/impl_sse/ssvfilter.c:229: BA ==> BY, BE
data/infernal-1.1.3/hmmer/src/impl_sse/ssvfilter.c:229: BA ==> BY, BE
data/infernal-1.1.3/hmmer/src/impl_sse/ssvfilter.c:229: BA ==> BY, BE
data/infernal-1.1.3/hmmer/src/impl_sse/ssvfilter.c:230: BA ==> BY, BE
data/infernal-1.1.3/hmmer/src/impl_sse/ssvfilter.c:230: BA ==> BY, BE
data/infernal-1.1.3/hmmer/src/impl_sse/ssvfilter.c:230: BA ==> BY, BE
data/infernal-1.1.3/hmmer/src/impl_sse/ssvfilter.c:230: BA ==> BY, BE
data/infernal-1.1.3/hmmer/src/impl_sse/ssvfilter.c:230: BA ==> BY, BE
data/infernal-1.1.3/hmmer/src/impl_sse/ssvfilter.c:230: BA ==> BY, BE
data/infernal-1.1.3/hmmer/src/impl_sse/ssvfilter.c:231: BA ==> BY, BE
data/infernal-1.1.3/hmmer/src/impl_sse/ssvfilter.c:231: BA ==> BY, BE
data/infernal-1.1.3/hmmer/src/impl_sse/ssvfilter.c:231: BA ==> BY, BE
data/infernal-1.1.3/hmmer/src/impl_sse/ssvfilter.c:231: BA ==> BY, BE
data/infernal-1.1.3/hmmer/src/impl_sse/ssvfilter.c:231: BA ==> BY, BE
data/infernal-1.1.3/hmmer/src/impl_sse/ssvfilter.c:231: BA ==> BY, BE
data/infernal-1.1.3/hmmer/src/impl_sse/ssvfilter.c:231: BA ==> BY, BE
data/infernal-1.1.3/hmmer/src/impl_sse/ssvfilter.c:232: BA ==> BY, BE
data/infernal-1.1.3/hmmer/src/impl_sse/ssvfilter.c:232: BA ==> BY, BE
data/infernal-1.1.3/hmmer/src/impl_sse/ssvfilter.c:232: BA ==> BY, BE
data/infernal-1.1.3/hmmer/src/impl_sse/ssvfilter.c:232: BA ==> BY, BE
data/infernal-1.1.3/hmmer/src/impl_sse/ssvfilter.c:232: BA ==> BY, BE
data/infernal-1.1.3/hmmer/src/impl_sse/ssvfilter.c:232: BA ==> BY, BE
data/infernal-1.1.3/hmmer/src/impl_sse/ssvfilter.c:232: BA ==> BY, BE
data/infernal-1.1.3/hmmer/src/impl_sse/ssvfilter.c:233: BA ==> BY, BE
data/infernal-1.1.3/hmmer/src/impl_sse/ssvfilter.c:233: BA ==> BY, BE
data/infernal-1.1.3/hmmer/src/impl_sse/ssvfilter.c:233: BA ==> BY, BE
data/infernal-1.1.3/hmmer/src/impl_sse/ssvfilter.c:233: BA ==> BY, BE
data/infernal-1.1.3/hmmer/src/impl_sse/ssvfilter.c:233: BA ==> BY, BE
data/infernal-1.1.3/hmmer/src/impl_sse/ssvfilter.c:233: BA ==> BY, BE
data/infernal-1.1.3/hmmer/src/impl_sse/ssvfilter.c:233: BA ==> BY, BE
data/infernal-1.1.3/hmmer/src/impl_sse/ssvfilter.c:234: BA ==> BY, BE
data/infernal-1.1.3/hmmer/src/impl_sse/ssvfilter.c:234: BA ==> BY, BE
data/infernal-1.1.3/hmmer/src/impl_sse/ssvfilter.c:234: BA ==> BY, BE
data/infernal-1.1.3/hmmer/src/impl_sse/ssvfilter.c:234: BA ==> BY, BE
data/infernal-1.1.3/hmmer/src/impl_sse/ssvfilter.c:234: BA ==> BY, BE
data/infernal-1.1.3/hmmer/src/impl_sse/ssvfilter.c:234: BA ==> BY, BE
data/infernal-1.1.3/hmmer/src/impl_sse/ssvfilter.c:254: BA ==> BY, BE
data/infernal-1.1.3/hmmer/src/impl_sse/ssvfilter.c:254: BA ==> BY, BE
data/infernal-1.1.3/hmmer/src/impl_sse/ssvfilter.c:254: BA ==> BY, BE
data/infernal-1.1.3/hmmer/src/impl_sse/ssvfilter.c:254: BA ==> BY, BE
data/infernal-1.1.3/hmmer/src/impl_sse/ssvfilter.c:254: BA ==> BY, BE
data/infernal-1.1.3/hmmer/src/impl_sse/ssvfilter.c:254: BA ==> BY, BE
data/infernal-1.1.3/hmmer/src/impl_sse/ssvfilter.c:254: BA ==> BY, BE
data/infernal-1.1.3/hmmer/src/impl_sse/ssvfilter.c:255: BA ==> BY, BE
data/infernal-1.1.3/hmmer/src/impl_sse/ssvfilter.c:255: BA ==> BY, BE
data/infernal-1.1.3/hmmer/src/impl_sse/ssvfilter.c:255: BA ==> BY, BE
data/infernal-1.1.3/hmmer/src/impl_sse/ssvfilter.c:255: BA ==> BY, BE
data/infernal-1.1.3/hmmer/src/impl_sse/ssvfilter.c:255: BA ==> BY, BE
data/infernal-1.1.3/hmmer/src/impl_sse/ssvfilter.c:255: BA ==> BY, BE
data/infernal-1.1.3/hmmer/src/impl_sse/ssvfilter.c:256: BA ==> BY, BE
data/infernal-1.1.3/hmmer/src/impl_sse/ssvfilter.c:256: BA ==> BY, BE
data/infernal-1.1.3/hmmer/src/impl_sse/ssvfilter.c:256: BA ==> BY, BE
data/infernal-1.1.3/hmmer/src/impl_sse/ssvfilter.c:256: BA ==> BY, BE
data/infernal-1.1.3/hmmer/src/impl_sse/ssvfilter.c:256: BA ==> BY, BE
data/infernal-1.1.3/hmmer/src/impl_sse/ssvfilter.c:256: BA ==> BY, BE
data/infernal-1.1.3/hmmer/src/impl_sse/ssvfilter.c:256: BA ==> BY, BE
data/infernal-1.1.3/hmmer/src/impl_sse/ssvfilter.c:257: BA ==> BY, BE
data/infernal-1.1.3/hmmer/src/impl_sse/ssvfilter.c:257: BA ==> BY, BE
data/infernal-1.1.3/hmmer/src/impl_sse/ssvfilter.c:257: BA ==> BY, BE
data/infernal-1.1.3/hmmer/src/impl_sse/ssvfilter.c:257: BA ==> BY, BE
data/infernal-1.1.3/hmmer/src/impl_sse/ssvfilter.c:257: BA ==> BY, BE
data/infernal-1.1.3/hmmer/src/impl_sse/ssvfilter.c:257: BA ==> BY, BE
data/infernal-1.1.3/hmmer/src/impl_sse/ssvfilter.c:257: BA ==> BY, BE
data/infernal-1.1.3/hmmer/src/impl_sse/ssvfilter.c:258: BA ==> BY, BE
data/infernal-1.1.3/hmmer/src/impl_sse/ssvfilter.c:258: BA ==> BY, BE
data/infernal-1.1.3/hmmer/src/impl_sse/ssvfilter.c:258: BA ==> BY, BE
data/infernal-1.1.3/hmmer/src/impl_sse/ssvfilter.c:258: BA ==> BY, BE
data/infernal-1.1.3/hmmer/src/impl_sse/ssvfilter.c:258: BA ==> BY, BE
data/infernal-1.1.3/hmmer/src/impl_sse/ssvfilter.c:258: BA ==> BY, BE
data/infernal-1.1.3/hmmer/src/impl_sse/ssvfilter.c:258: BA ==> BY, BE
data/infernal-1.1.3/hmmer/src/impl_sse/ssvfilter.c:259: BA ==> BY, BE
data/infernal-1.1.3/hmmer/src/impl_sse/ssvfilter.c:259: BA ==> BY, BE
data/infernal-1.1.3/hmmer/src/impl_sse/ssvfilter.c:259: BA ==> BY, BE
data/infernal-1.1.3/hmmer/src/impl_sse/ssvfilter.c:259: BA ==> BY, BE
data/infernal-1.1.3/hmmer/src/impl_sse/ssvfilter.c:259: BA ==> BY, BE
data/infernal-1.1.3/hmmer/src/impl_sse/ssvfilter.c:259: BA ==> BY, BE
data/infernal-1.1.3/hmmer/src/impl_sse/ssvfilter.c:260: BA ==> BY, BE
data/infernal-1.1.3/hmmer/src/impl_sse/ssvfilter.c:260: BA ==> BY, BE
data/infernal-1.1.3/hmmer/src/impl_sse/ssvfilter.c:260: BA ==> BY, BE
data/infernal-1.1.3/hmmer/src/impl_sse/ssvfilter.c:260: BA ==> BY, BE
data/infernal-1.1.3/hmmer/src/impl_sse/ssvfilter.c:260: BA ==> BY, BE
data/infernal-1.1.3/hmmer/src/impl_sse/ssvfilter.c:260: BA ==> BY, BE
data/infernal-1.1.3/hmmer/src/impl_sse/ssvfilter.c:260: BA ==> BY, BE
data/infernal-1.1.3/hmmer/src/impl_sse/ssvfilter.c:261: BA ==> BY, BE
data/infernal-1.1.3/hmmer/src/impl_sse/ssvfilter.c:261: BA ==> BY, BE
data/infernal-1.1.3/hmmer/src/impl_sse/ssvfilter.c:261: BA ==> BY, BE
data/infernal-1.1.3/hmmer/src/impl_sse/ssvfilter.c:261: BA ==> BY, BE
data/infernal-1.1.3/hmmer/src/impl_sse/ssvfilter.c:261: BA ==> BY, BE
data/infernal-1.1.3/hmmer/src/impl_sse/ssvfilter.c:261: BA ==> BY, BE
data/infernal-1.1.3/hmmer/src/impl_sse/ssvfilter.c:261: BA ==> BY, BE
data/infernal-1.1.3/hmmer/src/impl_sse/vitfilter.c:242: superceded ==> superseded
data/infernal-1.1.3/hmmer/src/impl_sse/impl_sse.h:140: structre ==> structure
data/infernal-1.1.3/hmmer/src/impl_vmx/impl_vmx.h:134: structre ==> structure
data/infernal-1.1.3/hmmer/src/impl_vmx/p7_oprofile.c:375: mutiple ==> multiple
data/infernal-1.1.3/hmmer/src/impl_vmx/p7_oprofile.c:829: superceded ==> superseded
data/infernal-1.1.3/hmmer/src/impl_vmx/vitfilter.c:241: superceded ==> superseded
data/infernal-1.1.3/hmmer/testsuite/3box.hmm:5: ALPH ==> ALPHA
data/infernal-1.1.3/hmmer/testsuite/Caudal_act.hmm:6: ALPH ==> ALPHA
data/infernal-1.1.3/hmmer/testsuite/Caudal_act.sto:5: ND ==> AND, 2ND
data/infernal-1.1.3/hmmer/testsuite/Caudal_act.sto:20: Suh ==> Such
data/infernal-1.1.3/hmmer/testsuite/LuxC.hmm:6: ALPH ==> ALPHA
data/infernal-1.1.3/hmmer/testsuite/M1.hmm:4: ALPH ==> ALPHA
data/infernal-1.1.3/hmmer/testsuite/PSE.hmm:5: ALPH ==> ALPHA
data/infernal-1.1.3/hmmer/testsuite/Patched.hmm:6: ALPH ==> ALPHA
data/infernal-1.1.3/hmmer/testsuite/Patched.sto:54: VEW ==> VIEW
data/infernal-1.1.3/hmmer/testsuite/RRM_1.hmm:6: ALPH ==> ALPHA
data/infernal-1.1.3/hmmer/testsuite/RRM_1.sto:297: ANE ==> AND
data/infernal-1.1.3/hmmer/testsuite/SMC_N.hmm:6: ALPH ==> ALPHA
data/infernal-1.1.3/hmmer/testsuite/SMC_N.sto:204: ede ==> edge
data/infernal-1.1.3/hmmer/testsuite/SMC_N.sto:207: tht ==> the, that
data/infernal-1.1.3/hmmer/testsuite/XYPPX.hmm:6: ALPH ==> ALPHA
data/infernal-1.1.3/hmmer/testsuite/ecori.hmm:5: ALPH ==> ALPHA
data/infernal-1.1.3/hmmer/testsuite/i15-hmmconvert.pl:45: ALPH ==> ALPHA
data/infernal-1.1.3/hmmer/testsuite/i15-hmmconvert.pl:90: ALPH ==> ALPHA
data/infernal-1.1.3/hmmer/testsuite/i19-hmmpgmd-ga.pl:220: ALPH ==> ALPHA
data/infernal-1.1.3/hmmer/testsuite/i19-hmmpgmd-ga.pl:512: ALPH ==> ALPHA
data/infernal-1.1.3/hmmer/testsuite/i19-hmmpgmd-ga.pl:1212: ALPH ==> ALPHA
data/infernal-1.1.3/hmmer/testsuite/i20-fmindex-core.pl:20: sting ==> string
data/infernal-1.1.3/hmmer/testsuite/i22-hmmpgmd-shard-ga.pl:202: ALPH ==> ALPHA
data/infernal-1.1.3/hmmer/testsuite/i22-hmmpgmd-shard-ga.pl:494: ALPH ==> ALPHA
data/infernal-1.1.3/hmmer/testsuite/i22-hmmpgmd-shard-ga.pl:1194: ALPH ==> ALPHA
data/infernal-1.1.3/hmmer/testsuite/minifam:188: ND ==> AND, 2ND
data/infernal-1.1.3/hmmer/testsuite/minifam:203: Suh ==> Such
data/infernal-1.1.3/hmmer/testsuite/parse_test_results.py:37: expectes ==> expects
data/infernal-1.1.3/hmmer/testsuite/parse_test_results.py:79: expectes ==> expects
data/infernal-1.1.3/hmmer/testsuite/20aa.hmm:4: ALPH ==> ALPHA
data/infernal-1.1.3/hmmer/testsuite/2OG-FeII_Oxy_3-nt.hmm:5: ALPH ==> ALPHA
data/infernal-1.1.3/hmmer/testsuite/2OG-FeII_Oxy_3.hmm:6: ALPH ==> ALPHA
data/infernal-1.1.3/hmmer/tutorial/7LESS_DROME:40: Wan ==> Want
data/infernal-1.1.3/hmmer/tutorial/MADE1.hmm:7: ALPH ==> ALPHA
data/infernal-1.1.3/hmmer/tutorial/MADE1.sto:20: Tiggers ==> Triggers
data/infernal-1.1.3/hmmer/tutorial/Pkinase.hmm:6: ALPH ==> ALPHA
data/infernal-1.1.3/hmmer/tutorial/Pkinase.sto:308: ADN ==> AND
data/infernal-1.1.3/hmmer/tutorial/fn3.hmm:6: ALPH ==> ALPHA
data/infernal-1.1.3/hmmer/tutorial/fn3.sto:192: SSEE ==> SEE
data/infernal-1.1.3/hmmer/tutorial/fn3.sto:226: SAV ==> SAVE
data/infernal-1.1.3/hmmer/tutorial/fn3.sto:278: SAV ==> SAVE
data/infernal-1.1.3/hmmer/tutorial/globins4.hmm:4: ALPH ==> ALPHA
data/infernal-1.1.3/debian/bin/cmalign:8: proccessor ==> processor
data/infernal-1.1.3/debian/patches/spelling.patch:13: inconsisent ==> inconsistent
data/infernal-1.1.3/debian/patches/spelling.patch:26: paramater ==> parameter
data/infernal-1.1.3/debian/patches/spelling.patch:48: seciton ==> section
data/infernal-1.1.3/debian/patches/spelling.patch:74: satisifies ==> satisfies
data/infernal-1.1.3/debian/patches/spelling.patch:87: Seperate ==> Separate
data/infernal-1.1.3/.pc/spelling.patch/src/cm_modelmaker.c:65: occurence ==> occurrence
data/infernal-1.1.3/.pc/spelling.patch/src/cm_modelmaker.c:70: occurence ==> occurrence
data/infernal-1.1.3/.pc/spelling.patch/src/cm_modelmaker.c:1364: inconsisent ==> inconsistent
data/infernal-1.1.3/.pc/spelling.patch/src/cm_modelmaker.c:1623: nd ==> and, 2nd
data/infernal-1.1.3/.pc/spelling.patch/src/cm_modelmaker.c:1663: nd ==> and, 2nd
data/infernal-1.1.3/.pc/spelling.patch/src/cm_modelmaker.c:1663: nd ==> and, 2nd
data/infernal-1.1.3/.pc/spelling.patch/src/cm_modelmaker.c:1663: nd ==> and, 2nd
data/infernal-1.1.3/.pc/spelling.patch/src/cm_modelmaker.c:1665: nd ==> and, 2nd
data/infernal-1.1.3/.pc/spelling.patch/src/cm_modelmaker.c:1667: nd ==> and, 2nd
data/infernal-1.1.3/.pc/spelling.patch/src/cm_modelmaker.c:1667: nd ==> and, 2nd
data/infernal-1.1.3/.pc/spelling.patch/src/cm_modelmaker.c:1668: nd ==> and, 2nd
data/infernal-1.1.3/.pc/spelling.patch/src/cm_modelmaker.c:1668: nd ==> and, 2nd
data/infernal-1.1.3/.pc/spelling.patch/src/cm_modelmaker.c:1672: nd ==> and, 2nd
data/infernal-1.1.3/.pc/spelling.patch/src/cm_modelmaker.c:1672: nd ==> and, 2nd
data/infernal-1.1.3/.pc/spelling.patch/src/cm_modelmaker.c:1676: nd ==> and, 2nd
data/infernal-1.1.3/.pc/spelling.patch/src/cm_modelmaker.c:1676: nd ==> and, 2nd
data/infernal-1.1.3/.pc/spelling.patch/src/cm_modelmaker.c:1680: nd ==> and, 2nd
data/infernal-1.1.3/.pc/spelling.patch/src/cm_modelmaker.c:1680: nd ==> and, 2nd
data/infernal-1.1.3/.pc/spelling.patch/documentation/manpages/cmalign.man:232: probabilites ==> probabilities
data/infernal-1.1.3/.pc/spelling.patch/documentation/manpages/cmalign.man:312: paramater ==> parameter
data/infernal-1.1.3/.pc/spelling.patch/documentation/manpages/cmalign.man:503: Propogate ==> Propagate
data/infernal-1.1.3/.pc/spelling.patch/documentation/manpages/cmcalibrate.man:54: seciton ==> section
data/infernal-1.1.3/.pc/spelling.patch/documentation/manpages/cmscan.man:348: heursitics ==> heuristics
data/infernal-1.1.3/.pc/spelling.patch/documentation/manpages/cmscan.man:749: satisifies ==> satisfies
data/infernal-1.1.3/.pc/spelling.patch/documentation/manpages/cmstat.man:118: Seperate ==> Separate
data/infernal-1.1.3/.pc/reproducible_build.patch/hmmer/src/p7_tophits.c:942: crossreferences ==> cross-references
data/infernal-1.1.3/.pc/reproducible_build.patch/hmmer/src/p7_tophits.c:1211: nd ==> and, 2nd
data/infernal-1.1.3/.pc/reproducible_build.patch/hmmer/src/p7_tophits.c:1292: nd ==> and, 2nd
data/infernal-1.1.3/.pc/reproducible_build.patch/hmmer/src/p7_tophits.c:1297: nd ==> and, 2nd
data/infernal-1.1.3/.pc/reproducible_build.patch/hmmer/src/p7_tophits.c:1301: nd ==> and, 2nd
data/infernal-1.1.3/.pc/reproducible_build.patch/hmmer/src/p7_tophits.c:1325: nd ==> and, 2nd
data/infernal-1.1.3/.pc/reproducible_build.patch/hmmer/src/p7_tophits.c:1371: nd ==> and, 2nd
data/infernal-1.1.3/.pc/reproducible_build.patch/hmmer/src/p7_tophits.c:1377: nd ==> and, 2nd
data/infernal-1.1.3/.pc/reproducible_build.patch/hmmer/src/p7_tophits.c:1380: nd ==> and, 2nd
data/infernal-1.1.3/.pc/reproducible_build.patch/hmmer/src/p7_tophits.c:1663: nd ==> and, 2nd
data/infernal-1.1.3/.pc/reproducible_build.patch/hmmer/src/p7_tophits.c:1680: nd ==> and, 2nd
data/infernal-1.1.3/.pc/reproducible_build.patch/hmmer/src/p7_tophits.c:1684: nd ==> and, 2nd
data/infernal-1.1.3/.pc/reproducible_build.patch/hmmer/src/p7_tophits.c:1706: nd ==> and, 2nd
data/infernal-1.1.3/.pc/reproducible_build.patch/hmmer/src/p7_tophits.c:1747: formated ==> formatted
data/infernal-1.1.3/.pc/reproducible_build.patch/src/cm_tophits.c:238: irregardless ==> regardless
data/infernal-1.1.3/.pc/reproducible_build.patch/src/cm_tophits.c:269: irregardless ==> regardless
data/infernal-1.1.3/.pc/reproducible_build.patch/src/cm_tophits.c:302: irregardless ==> regardless
data/infernal-1.1.3/.pc/reproducible_build.patch/src/cm_tophits.c:1721: colum ==> column
data/infernal-1.1.3/.pc/reproducible_build.patch/src/cm_tophits.c:2886: nd ==> and, 2nd
data/infernal-1.1.3/.pc/reproducible_build.patch/src/cm_tophits.c:2887: nd ==> and, 2nd
data/infernal-1.1.3/.pc/reproducible_build.patch/src/cm_tophits.c:2887: nd ==> and, 2nd
data/infernal-1.1.3/.pc/reproducible_build.patch/src/cm_tophits.c:2887: nd ==> and, 2nd
data/infernal-1.1.3/.pc/reproducible_build.patch/src/cm_tophits.c:2887: nd ==> and, 2nd
data/infernal-1.1.3/.pc/reproducible_build.patch/src/cm_tophits.c:2888: nd ==> and, 2nd
data/infernal-1.1.3/.pc/reproducible_build.patch/src/cm_tophits.c:2888: nd ==> and, 2nd
data/infernal-1.1.3/.pc/reproducible_build.patch/src/cm_tophits.c:2888: nd ==> and, 2nd
data/infernal-1.1.3/.pc/reproducible_build.patch/src/cm_tophits.c:2888: nd ==> and, 2nd