data/jebl2-0.1+git20201011.969bd4b/src/jebl/evolution/align/Align.java:109: matchs ==> matches data/jebl2-0.1+git20201011.969bd4b/src/jebl/evolution/align/Align.java:175: auxillary ==> auxiliary data/jebl2-0.1+git20201011.969bd4b/src/jebl/evolution/align/AlignCommand.java:218: atleast ==> at least data/jebl2-0.1+git20201011.969bd4b/src/jebl/evolution/align/AlignCommand.java:389: mesage ==> message data/jebl2-0.1+git20201011.969bd4b/src/jebl/evolution/alignments/ResampledAlignment.java:21: replacment ==> replacement data/jebl2-0.1+git20201011.969bd4b/src/jebl/evolution/characters/DiscreteCharacter.java:87: characeter ==> character data/jebl2-0.1+git20201011.969bd4b/src/jebl/evolution/coalescent/ConstantPopulation.java:70: unecessary ==> unnecessary data/jebl2-0.1+git20201011.969bd4b/src/jebl/evolution/coalescent/IntervalList.java:13: intevals ==> intervals data/jebl2-0.1+git20201011.969bd4b/src/jebl/evolution/coalescent/Intervals.java:19: intevals ==> intervals data/jebl2-0.1+git20201011.969bd4b/src/jebl/evolution/distances/HKYDistanceMatrix.java:30: wheather ==> weather, whether data/jebl2-0.1+git20201011.969bd4b/src/jebl/evolution/distances/HKYDistanceMatrix.java:70: neccesarily ==> necessarily data/jebl2-0.1+git20201011.969bd4b/src/jebl/evolution/distances/TamuraNeiDistanceMatrix.java:21: respectivly ==> respectively data/jebl2-0.1+git20201011.969bd4b/src/jebl/evolution/distances/TamuraNeiDistanceMatrix.java:26: amout ==> amount data/jebl2-0.1+git20201011.969bd4b/src/jebl/evolution/io/FastaImporter.java:67: constuctor ==> constructor data/jebl2-0.1+git20201011.969bd4b/src/jebl/evolution/io/FastaImporter.java:137: althought ==> although data/jebl2-0.1+git20201011.969bd4b/src/jebl/evolution/io/ImportHelper.java:271: consectutive ==> consecutive data/jebl2-0.1+git20201011.969bd4b/src/jebl/evolution/io/ImportHelper.java:327: explicitely ==> explicitly data/jebl2-0.1+git20201011.969bd4b/src/jebl/evolution/io/NewickImporter.java:29: unqouted ==> unquoted data/jebl2-0.1+git20201011.969bd4b/src/jebl/evolution/io/NewickImporter.java:29: lables ==> labels data/jebl2-0.1+git20201011.969bd4b/src/jebl/evolution/io/NewickImporter.java:213: Emtpy ==> Empty data/jebl2-0.1+git20201011.969bd4b/src/jebl/evolution/io/NexusExporter.java:233: symetric ==> symmetric data/jebl2-0.1+git20201011.969bd4b/src/jebl/evolution/io/NexusExporter.java:384: whet ==> when, what, wet data/jebl2-0.1+git20201011.969bd4b/src/jebl/evolution/io/NexusImporter.java:754: doesnt ==> doesn't, does not data/jebl2-0.1+git20201011.969bd4b/src/jebl/evolution/io/NexusImporter.java:1039: satisfing ==> satisfying data/jebl2-0.1+git20201011.969bd4b/src/jebl/evolution/io/NexusImporter.java:1041: simmilar ==> similar data/jebl2-0.1+git20201011.969bd4b/src/jebl/evolution/io/NexusImporter.java:1325: Emtpy ==> Empty data/jebl2-0.1+git20201011.969bd4b/src/jebl/evolution/io/NexusImporter.java:1441: qouted ==> quoted data/jebl2-0.1+git20201011.969bd4b/src/jebl/evolution/io/PHYLIPExporter.java:17: hopefuly ==> hopefully data/jebl2-0.1+git20201011.969bd4b/src/jebl/evolution/parsimony/FitchParsimony.java:182: reasy ==> ready, easy data/jebl2-0.1+git20201011.969bd4b/src/jebl/evolution/sequences/AminoAcids.java:45: Ser ==> Set data/jebl2-0.1+git20201011.969bd4b/src/jebl/evolution/sequences/AminoAcids.java:126: Ser ==> Set data/jebl2-0.1+git20201011.969bd4b/src/jebl/evolution/sequences/Nucleotides.java:160: betwen ==> between data/jebl2-0.1+git20201011.969bd4b/src/jebl/evolution/sequences/Nucleotides.java:162: cannonical ==> canonical data/jebl2-0.1+git20201011.969bd4b/src/jebl/evolution/sequences/Nucleotides.java:163: ambigous ==> ambiguous data/jebl2-0.1+git20201011.969bd4b/src/jebl/evolution/sequences/Nucleotides.java:172: betwen ==> between data/jebl2-0.1+git20201011.969bd4b/src/jebl/evolution/sequences/Nucleotides.java:174: cannonical ==> canonical data/jebl2-0.1+git20201011.969bd4b/src/jebl/evolution/sequences/Nucleotides.java:175: ambigous ==> ambiguous data/jebl2-0.1+git20201011.969bd4b/src/jebl/evolution/sequences/Nucleotides.java:184: betwen ==> between data/jebl2-0.1+git20201011.969bd4b/src/jebl/evolution/sequences/Nucleotides.java:186: cannonical ==> canonical data/jebl2-0.1+git20201011.969bd4b/src/jebl/evolution/sequences/Nucleotides.java:187: ambigous ==> ambiguous data/jebl2-0.1+git20201011.969bd4b/src/jebl/evolution/sequences/Nucleotides.java:195: betwen ==> between data/jebl2-0.1+git20201011.969bd4b/src/jebl/evolution/sequences/Nucleotides.java:197: cannonical ==> canonical data/jebl2-0.1+git20201011.969bd4b/src/jebl/evolution/sequences/Nucleotides.java:198: ambigous ==> ambiguous data/jebl2-0.1+git20201011.969bd4b/src/jebl/evolution/sequences/Sequence.java:151: occurances ==> occurrences data/jebl2-0.1+git20201011.969bd4b/src/jebl/evolution/sequences/Sequence.java:154: occurances ==> occurrences data/jebl2-0.1+git20201011.969bd4b/src/jebl/evolution/sequences/State.java:100: ambigous ==> ambiguous data/jebl2-0.1+git20201011.969bd4b/src/jebl/evolution/sequences/Utils.java:401: implicitely ==> implicitly data/jebl2-0.1+git20201011.969bd4b/src/jebl/evolution/substmodel/AbstractRateMatrix.java:242: acheive ==> achieve data/jebl2-0.1+git20201011.969bd4b/src/jebl/evolution/trees/ClusteringTreeBuilder.java:98: completly ==> completely data/jebl2-0.1+git20201011.969bd4b/src/jebl/evolution/trees/CompactRootedTree.java:19: Maximun ==> Maximum data/jebl2-0.1+git20201011.969bd4b/src/jebl/evolution/trees/CompactRootedTree.java:40: decendents ==> descendents, descendants data/jebl2-0.1+git20201011.969bd4b/src/jebl/evolution/trees/CompactRootedTree.java:41: reffered ==> referred data/jebl2-0.1+git20201011.969bd4b/src/jebl/evolution/trees/CompactRootedTree.java:52: Decendents ==> Descendents, descendants data/jebl2-0.1+git20201011.969bd4b/src/jebl/evolution/trees/CompactRootedTree.java:58: Decendents ==> Descendents, descendants data/jebl2-0.1+git20201011.969bd4b/src/jebl/evolution/trees/CompactRootedTree.java:78: insted ==> instead data/jebl2-0.1+git20201011.969bd4b/src/jebl/evolution/trees/CompactRootedTree.java:102: attributs ==> attributes data/jebl2-0.1+git20201011.969bd4b/src/jebl/evolution/trees/CompactRootedTree.java:162: decendents ==> descendents, descendants data/jebl2-0.1+git20201011.969bd4b/src/jebl/evolution/trees/CompactRootedTree.java:224: decendents ==> descendents, descendants data/jebl2-0.1+git20201011.969bd4b/src/jebl/evolution/trees/CompactRootedTree.java:231: decendents ==> descendents, descendants data/jebl2-0.1+git20201011.969bd4b/src/jebl/evolution/trees/CompactRootedTree.java:270: decendents ==> descendents, descendants data/jebl2-0.1+git20201011.969bd4b/src/jebl/evolution/trees/ConsensusTreeBuilder.java:22: specifing ==> specifying data/jebl2-0.1+git20201011.969bd4b/src/jebl/evolution/trees/ConsensusTreeBuilder.java:58: consistancy ==> consistency data/jebl2-0.1+git20201011.969bd4b/src/jebl/evolution/trees/MRCACConsensusTreeBuilder.java:56: decendentants ==> descendants data/jebl2-0.1+git20201011.969bd4b/src/jebl/evolution/trees/MostProbableTopology.java:325: frequencey ==> frequency data/jebl2-0.1+git20201011.969bd4b/src/jebl/evolution/trees/MutableRootedTree.java:156: recursivly ==> recursively data/jebl2-0.1+git20201011.969bd4b/src/jebl/evolution/trees/MutableRootedTree.java:157: recursivly ==> recursively data/jebl2-0.1+git20201011.969bd4b/src/jebl/evolution/trees/MutableRootedTree.java:157: ommiting ==> omitting data/jebl2-0.1+git20201011.969bd4b/src/jebl/evolution/trees/MutableRootedTree.java:258: stucture ==> structure data/jebl2-0.1+git20201011.969bd4b/src/jebl/evolution/trees/MutableRootedTree.java:390: refered ==> referred data/jebl2-0.1+git20201011.969bd4b/src/jebl/evolution/trees/MutableRootedTree.java:398: refered ==> referred data/jebl2-0.1+git20201011.969bd4b/src/jebl/evolution/trees/RootedFromUnrooted.java:46: recursivly ==> recursively data/jebl2-0.1+git20201011.969bd4b/src/jebl/evolution/trees/RootedFromUnrooted.java:218: syntetic ==> synthetic data/jebl2-0.1+git20201011.969bd4b/src/jebl/evolution/trees/RootedFromUnrooted.java:235: syntetic ==> synthetic data/jebl2-0.1+git20201011.969bd4b/src/jebl/evolution/trees/RootedSubtree.java:99: stucture ==> structure data/jebl2-0.1+git20201011.969bd4b/src/jebl/evolution/trees/RootedSubtree.java:234: refered ==> referred data/jebl2-0.1+git20201011.969bd4b/src/jebl/evolution/trees/RootedSubtree.java:242: refered ==> referred data/jebl2-0.1+git20201011.969bd4b/src/jebl/evolution/trees/SimpleRootedTree.java:155: stucture ==> structure data/jebl2-0.1+git20201011.969bd4b/src/jebl/evolution/trees/SimpleRootedTree.java:374: refered ==> referred data/jebl2-0.1+git20201011.969bd4b/src/jebl/evolution/trees/SimpleRootedTree.java:383: refered ==> referred data/jebl2-0.1+git20201011.969bd4b/src/jebl/evolution/trees/SimpleTree.java:52: stucture ==> structure data/jebl2-0.1+git20201011.969bd4b/src/jebl/evolution/trees/SimpleTree.java:187: refered ==> referred data/jebl2-0.1+git20201011.969bd4b/src/jebl/evolution/trees/SimpleTree.java:195: refered ==> referred data/jebl2-0.1+git20201011.969bd4b/src/jebl/evolution/trees/SplitUtils.java:77: alway ==> always data/jebl2-0.1+git20201011.969bd4b/src/jebl/evolution/trees/Tree.java:36: refered ==> referred data/jebl2-0.1+git20201011.969bd4b/src/jebl/evolution/trees/Tree.java:42: refered ==> referred data/jebl2-0.1+git20201011.969bd4b/src/jebl/evolution/trees/TreeBiPartitionInfo.java:100: dout ==> doubt data/jebl2-0.1+git20201011.969bd4b/src/jebl/evolution/trees/TreeBiPartitionInfo.java:129: dout ==> doubt data/jebl2-0.1+git20201011.969bd4b/src/jebl/evolution/trees/TreeBiPartitionInfo.java:132: dout ==> doubt data/jebl2-0.1+git20201011.969bd4b/src/jebl/evolution/trees/TreeBiPartitionInfo.java:136: dout ==> doubt data/jebl2-0.1+git20201011.969bd4b/src/jebl/evolution/trees/TreeBuilderFactory.java:7: develope ==> develop data/jebl2-0.1+git20201011.969bd4b/src/jebl/evolution/trees/TreeBuilderFactory.java:40: Wheather ==> Weather, whether data/jebl2-0.1+git20201011.969bd4b/src/jebl/evolution/trees/Utils.java:106: whet ==> when, what, wet data/jebl2-0.1+git20201011.969bd4b/src/jebl/evolution/trees/Utils.java:303: childern ==> children data/jebl2-0.1+git20201011.969bd4b/src/jebl/math/MersenneTwisterFast.java:88: inforce ==> enforce data/jebl2-0.1+git20201011.969bd4b/src/jebl/math/MersenneTwisterFast.java:91: curernt ==> current data/jebl2-0.1+git20201011.969bd4b/src/jebl/math/MersenneTwisterFast.java:123: Initalize ==> Initialize data/jebl2-0.1+git20201011.969bd4b/src/jebl/math/MultivariateMinimum.java:151: succesful ==> successful data/jebl2-0.1+git20201011.969bd4b/src/jebl/math/OrderEnumerator.java:33: differnet ==> different data/jebl2-0.1+git20201011.969bd4b/src/jebl/math/OrderEnumerator.java:352: untill ==> until data/jebl2-0.1+git20201011.969bd4b/src/jebl/math/OrthogonalHints.java:16: alow ==> allow data/jebl2-0.1+git20201011.969bd4b/src/jebl/math/OrthogonalHints.java:59: upto ==> up to data/jebl2-0.1+git20201011.969bd4b/src/jebl/math/UnivariateMinimum.java:43: neccessary ==> necessary data/jebl2-0.1+git20201011.969bd4b/src/jebl/util/CompositeProgressListener.java:19: explicitely ==> explicitly data/jebl2-0.1+git20201011.969bd4b/src/jebl/util/CompositeProgressListener.java:169: concatentate ==> concatenate data/jebl2-0.1+git20201011.969bd4b/src/jebl/util/CompositeProgressListener.java:181: ot ==> to, of, or data/jebl2-0.1+git20201011.969bd4b/src/jebl/util/Utils.java:295: formating ==> formatting data/jebl2-0.1+git20201011.969bd4b/src/jebl/util/Utils.java:311: formating ==> formatting data/jebl2-0.1+git20201011.969bd4b/src/jebl/util/Utils.java:327: formating ==> formatting data/jebl2-0.1+git20201011.969bd4b/src/jebl/util/Utils.java:336: formating ==> formatting data/jebl2-0.1+git20201011.969bd4b/src/jebl/util/Utils.java:354: formating ==> formatting data/jebl2-0.1+git20201011.969bd4b/src/jebl/util/Utils.java:363: formating ==> formatting data/jebl2-0.1+git20201011.969bd4b/src/jebl/util/Utils.java:372: formating ==> formatting data/jebl2-0.1+git20201011.969bd4b/src/jebl/util/Utils.java:390: formating ==> formatting data/jebl2-0.1+git20201011.969bd4b/src/jebl/util/Utils.java:403: formating ==> formatting