data/libbpp-seq-2.4.1/COPYING.txt:343: therefor ==> therefore
data/libbpp-seq-2.4.1/ChangeLog:204: unknow ==> unknown
data/libbpp-seq-2.4.1/ChangeLog:216: independant ==> independent
data/libbpp-seq-2.4.1/ChangeLog:227: contructors ==> constructors
data/libbpp-seq-2.4.1/ChangeLog:297: contructor ==> constructor
data/libbpp-seq-2.4.1/ChangeLog:377: unknow ==> unknown
data/libbpp-seq-2.4.1/ChangeLog:382: inheritence ==> inheritance
data/libbpp-seq-2.4.1/ChangeLog:408: alogrithm ==> algorithm
data/libbpp-seq-2.4.1/Doxyfile:1078: therefor ==> therefore
data/libbpp-seq-2.4.1/src/Bpp/Seq/CodonSiteTools.cpp:102: ot ==> to, of, or
data/libbpp-seq-2.4.1/src/Bpp/Seq/CodonSiteTools.h:110: stricly ==> strictly
data/libbpp-seq-2.4.1/src/Bpp/Seq/CodonSiteTools.h:144: occuring ==> occurring
data/libbpp-seq-2.4.1/src/Bpp/Seq/CodonSiteTools.h:164: occuring ==> occurring
data/libbpp-seq-2.4.1/src/Bpp/Seq/CodonSiteTools.h:251: concensus ==> consensus
data/libbpp-seq-2.4.1/src/Bpp/Seq/CodonSiteTools.h:251: alignement ==> alignment
data/libbpp-seq-2.4.1/src/Bpp/Seq/CoreSite.h:122: assocated ==> associated
data/libbpp-seq-2.4.1/src/Bpp/Seq/Sequence.h:62: objets ==> objects
data/libbpp-seq-2.4.1/src/Bpp/Seq/Sequence.h:90: internaly ==> internally
data/libbpp-seq-2.4.1/src/Bpp/Seq/Sequence.h:163: objets ==> objects
data/libbpp-seq-2.4.1/src/Bpp/Seq/SequencePositionIterators.cpp:106: ans ==> and
data/libbpp-seq-2.4.1/src/Bpp/Seq/SequencePositionIterators.cpp:108: ans ==> and
data/libbpp-seq-2.4.1/src/Bpp/Seq/SequenceTools.cpp:185: symetric ==> symmetric
data/libbpp-seq-2.4.1/src/Bpp/Seq/SequenceTools.cpp:228: symetric ==> symmetric
data/libbpp-seq-2.4.1/src/Bpp/Seq/SequenceTools.cpp:236: treate ==> treat
data/libbpp-seq-2.4.1/src/Bpp/Seq/SequenceTools.h:241: methode ==> method
data/libbpp-seq-2.4.1/src/Bpp/Seq/SequenceTools.h:242: separatly ==> separately
data/libbpp-seq-2.4.1/src/Bpp/Seq/SequenceTools.h:449: occurence ==> occurrence
data/libbpp-seq-2.4.1/src/Bpp/Seq/SequenceWithAnnotation.h:80: complient ==> compliant
data/libbpp-seq-2.4.1/src/Bpp/Seq/SequenceWithAnnotation.h:88: succesful ==> successful
data/libbpp-seq-2.4.1/src/Bpp/Seq/SequenceWithAnnotation.h:111: objets ==> objects
data/libbpp-seq-2.4.1/src/Bpp/Seq/SequenceWithAnnotation.h:312: internaly ==> internally
data/libbpp-seq-2.4.1/src/Bpp/Seq/SequenceWithQuality.h:208: usefull ==> useful
data/libbpp-seq-2.4.1/src/Bpp/Seq/SequenceWithQuality.h:231: alowed ==> allowed
data/libbpp-seq-2.4.1/src/Bpp/Seq/SequenceWithQuality.h:252: alowed ==> allowed
data/libbpp-seq-2.4.1/src/Bpp/Seq/SequenceWithQuality.h:276: alowed ==> allowed
data/libbpp-seq-2.4.1/src/Bpp/Seq/SequenceWithQuality.h:303: alowed ==> allowed
data/libbpp-seq-2.4.1/src/Bpp/Seq/SequenceWithQuality.h:330: alowed ==> allowed
data/libbpp-seq-2.4.1/src/Bpp/Seq/SequenceWithQuality.h:358: alowed ==> allowed
data/libbpp-seq-2.4.1/src/Bpp/Seq/SequenceWithQuality.h:381: alowed ==> allowed
data/libbpp-seq-2.4.1/src/Bpp/Seq/SequenceWithQuality.h:407: alowed ==> allowed
data/libbpp-seq-2.4.1/src/Bpp/Seq/SequenceWithQuality.h:434: alowed ==> allowed
data/libbpp-seq-2.4.1/src/Bpp/Seq/StringSequenceTools.cpp:335: Unknow ==> Unknown
data/libbpp-seq-2.4.1/src/Bpp/Seq/StringSequenceTools.h:78: begining ==> beginning
data/libbpp-seq-2.4.1/src/Bpp/Seq/StringSequenceTools.h:108: occurence ==> occurrence
data/libbpp-seq-2.4.1/src/Bpp/Seq/StringSequenceTools.h:117: occurence ==> occurrence
data/libbpp-seq-2.4.1/src/Bpp/Seq/SymbolList.h:103: internaly ==> internally
data/libbpp-seq-2.4.1/src/Bpp/Seq/SymbolList.h:111: internaly ==> internally
data/libbpp-seq-2.4.1/src/Bpp/Seq/SymbolList.h:142: postion ==> position
data/libbpp-seq-2.4.1/src/Bpp/Seq/SymbolList.h:188: postion ==> position
data/libbpp-seq-2.4.1/src/Bpp/Seq/SymbolList.h:213: modifiy ==> modify
data/libbpp-seq-2.4.1/src/Bpp/Seq/SymbolListTools.h:96: optionaly ==> optionally
data/libbpp-seq-2.4.1/src/Bpp/Seq/SymbolListTools.h:110: optionaly ==> optionally
data/libbpp-seq-2.4.1/src/Bpp/Seq/Alphabet/AbstractAlphabet.h:61: uppon ==> upon
data/libbpp-seq-2.4.1/src/Bpp/Seq/Alphabet/AbstractAlphabet.h:107: alph ==> alpha
data/libbpp-seq-2.4.1/src/Bpp/Seq/Alphabet/AbstractAlphabet.h:107: alph ==> alpha
data/libbpp-seq-2.4.1/src/Bpp/Seq/Alphabet/AbstractAlphabet.h:107: alph ==> alpha
data/libbpp-seq-2.4.1/src/Bpp/Seq/Alphabet/AbstractAlphabet.h:107: alph ==> alpha
data/libbpp-seq-2.4.1/src/Bpp/Seq/Alphabet/AbstractAlphabet.h:107: alph ==> alpha
data/libbpp-seq-2.4.1/src/Bpp/Seq/Alphabet/AbstractAlphabet.h:109: alph ==> alpha
data/libbpp-seq-2.4.1/src/Bpp/Seq/Alphabet/AbstractAlphabet.h:110: alph ==> alpha
data/libbpp-seq-2.4.1/src/Bpp/Seq/Alphabet/AbstractAlphabet.h:113: alph ==> alpha
data/libbpp-seq-2.4.1/src/Bpp/Seq/Alphabet/AbstractAlphabet.h:118: alph ==> alpha
data/libbpp-seq-2.4.1/src/Bpp/Seq/Alphabet/AbstractAlphabet.h:119: alph ==> alpha
data/libbpp-seq-2.4.1/src/Bpp/Seq/Alphabet/AbstractAlphabet.h:121: alph ==> alpha
data/libbpp-seq-2.4.1/src/Bpp/Seq/Alphabet/AbstractAlphabet.h:122: alph ==> alpha
data/libbpp-seq-2.4.1/src/Bpp/Seq/Alphabet/AbstractAlphabet.h:123: alph ==> alpha
data/libbpp-seq-2.4.1/src/Bpp/Seq/Alphabet/AbstractAlphabet.h:124: alph ==> alpha
data/libbpp-seq-2.4.1/src/Bpp/Seq/Alphabet/AbstractAlphabet.h:171: corect ==> correct
data/libbpp-seq-2.4.1/src/Bpp/Seq/Alphabet/AbstractAlphabet.h:182: corect ==> correct
data/libbpp-seq-2.4.1/src/Bpp/Seq/Alphabet/AbstractAlphabet.h:193: corect ==> correct
data/libbpp-seq-2.4.1/src/Bpp/Seq/Alphabet/AbstractAlphabet.h:206: corect ==> correct
data/libbpp-seq-2.4.1/src/Bpp/Seq/Alphabet/Alphabet.h:290: funcion ==> function
data/libbpp-seq-2.4.1/src/Bpp/Seq/Alphabet/Alphabet.h:449: tring ==> trying, string, ring
data/libbpp-seq-2.4.1/src/Bpp/Seq/Alphabet/AlphabetTools.h:139: instanciation ==> instantiation
data/libbpp-seq-2.4.1/src/Bpp/Seq/Alphabet/AlphabetTools.h:145: instanciation ==> instantiation
data/libbpp-seq-2.4.1/src/Bpp/Seq/Alphabet/AlphabetTools.h:151: instanciation ==> instantiation
data/libbpp-seq-2.4.1/src/Bpp/Seq/Alphabet/AlphabetTools.h:157: instanciation ==> instantiation
data/libbpp-seq-2.4.1/src/Bpp/Seq/Alphabet/AlphabetTools.h:163: instanciation ==> instantiation
data/libbpp-seq-2.4.1/src/Bpp/Seq/Alphabet/AlphabetTools.h:169: instanciation ==> instantiation
data/libbpp-seq-2.4.1/src/Bpp/Seq/Alphabet/AlphabetTools.h:175: instanciation ==> instantiation
data/libbpp-seq-2.4.1/src/Bpp/Seq/Alphabet/AlphabetTools.h:181: instanciation ==> instantiation
data/libbpp-seq-2.4.1/src/Bpp/Seq/Alphabet/AlphabetTools.h:187: instanciation ==> instantiation
data/libbpp-seq-2.4.1/src/Bpp/Seq/Alphabet/CodonAlphabet.h:410: postion ==> position
data/libbpp-seq-2.4.1/src/Bpp/Seq/Alphabet/NucleicAlphabet.h:147: valide ==> valid
data/libbpp-seq-2.4.1/src/Bpp/Seq/Alphabet/NucleicAlphabet.h:174: valide ==> valid
data/libbpp-seq-2.4.1/src/Bpp/Seq/Alphabet/NucleicAlphabet.h:198: valide ==> valid
data/libbpp-seq-2.4.1/src/Bpp/Seq/Alphabet/ProteicAlphabet.cpp:74: SER ==> SET
data/libbpp-seq-2.4.1/src/Bpp/Seq/Alphabet/WordAlphabet.h:138: postion ==> position
data/libbpp-seq-2.4.1/src/Bpp/Seq/Alphabet/WordAlphabet.h:456: postion ==> position
data/libbpp-seq-2.4.1/src/Bpp/Seq/AlphabetIndex/UserAlphabetIndex1.h:62: alph ==> alpha
data/libbpp-seq-2.4.1/src/Bpp/Seq/AlphabetIndex/UserAlphabetIndex1.h:63: alph ==> alpha
data/libbpp-seq-2.4.1/src/Bpp/Seq/App/SequenceApplicationTools.h:229: fallow ==> follow
data/libbpp-seq-2.4.1/src/Bpp/Seq/Container/AlignedSequenceContainer.h:131: alligned ==> aligned
data/libbpp-seq-2.4.1/src/Bpp/Seq/Container/CompressedVectorSiteContainer.h:69: pratical ==> practical
data/libbpp-seq-2.4.1/src/Bpp/Seq/Container/CompressedVectorSiteContainer.h:162: Theses ==> These, thesis
data/libbpp-seq-2.4.1/src/Bpp/Seq/Container/MapSequenceContainer.cpp:429: teh ==> the
data/libbpp-seq-2.4.1/src/Bpp/Seq/Container/OrderedSequenceContainer.h:156: modifiy ==> modify
data/libbpp-seq-2.4.1/src/Bpp/Seq/Container/SequenceContainer.h:69: throught ==> thought, through, throughout
data/libbpp-seq-2.4.1/src/Bpp/Seq/Container/SequenceContainer.h:237: objet ==> object
data/libbpp-seq-2.4.1/src/Bpp/Seq/Container/SequenceContainer.h:247: modifiy ==> modify
data/libbpp-seq-2.4.1/src/Bpp/Seq/Container/SequenceContainerTools.h:130: wich ==> which
data/libbpp-seq-2.4.1/src/Bpp/Seq/Container/SequenceContainerTools.h:147: wich ==> which
data/libbpp-seq-2.4.1/src/Bpp/Seq/Container/SequenceContainerTools.h:164: wich ==> which
data/libbpp-seq-2.4.1/src/Bpp/Seq/Container/SiteContainer.h:77: objet ==> object
data/libbpp-seq-2.4.1/src/Bpp/Seq/Container/SiteContainerTools.h:86: caracters ==> characters
data/libbpp-seq-2.4.1/src/Bpp/Seq/Container/SiteContainerTools.h:178: wich ==> which
data/libbpp-seq-2.4.1/src/Bpp/Seq/Container/SiteContainerTools.h:198: wich ==> which
data/libbpp-seq-2.4.1/src/Bpp/Seq/Container/SiteContainerTools.h:292: alignement ==> alignment
data/libbpp-seq-2.4.1/src/Bpp/Seq/Container/SiteContainerTools.h:309: alignement ==> alignment
data/libbpp-seq-2.4.1/src/Bpp/Seq/Container/SiteContainerTools.h:313: postion ==> position
data/libbpp-seq-2.4.1/src/Bpp/Seq/Container/SiteContainerTools.h:317: alignement ==> alignment
data/libbpp-seq-2.4.1/src/Bpp/Seq/Container/SiteContainerTools.h:450: exhisting ==> existing
data/libbpp-seq-2.4.1/src/Bpp/Seq/Container/SiteContainerTools.h:455: contianer ==> container
data/libbpp-seq-2.4.1/src/Bpp/Seq/Container/VectorSequenceContainer.h:78: uppon ==> upon
data/libbpp-seq-2.4.1/src/Bpp/Seq/Container/VectorSequenceContainer.h:96: contructors ==> constructors
data/libbpp-seq-2.4.1/src/Bpp/Seq/Container/VectorSiteContainer.h:153: Theses ==> These, thesis
data/libbpp-seq-2.4.1/src/Bpp/Seq/GeneticCode/GeneticCode.h:232: begining ==> beginning
data/libbpp-seq-2.4.1/src/Bpp/Seq/Io/BppOAlignmentReaderFormat.h:80: occured ==> occurred
data/libbpp-seq-2.4.1/src/Bpp/Seq/Io/BppOAlignmentWriterFormat.h:82: occured ==> occurred
data/libbpp-seq-2.4.1/src/Bpp/Seq/Io/BppOAlphabetIndex1Format.h:55: instanciation ==> instantiation
data/libbpp-seq-2.4.1/src/Bpp/Seq/Io/BppOAlphabetIndex1Format.h:71: instanciated ==> instantiated
data/libbpp-seq-2.4.1/src/Bpp/Seq/Io/BppOAlphabetIndex1Format.h:105: occured ==> occurred
data/libbpp-seq-2.4.1/src/Bpp/Seq/Io/BppOAlphabetIndex2Format.h:55: instanciation ==> instantiation
data/libbpp-seq-2.4.1/src/Bpp/Seq/Io/BppOAlphabetIndex2Format.h:71: instanciated ==> instantiated
data/libbpp-seq-2.4.1/src/Bpp/Seq/Io/BppOAlphabetIndex2Format.h:105: occured ==> occurred
data/libbpp-seq-2.4.1/src/Bpp/Seq/Io/BppOSequenceReaderFormat.h:81: occured ==> occurred
data/libbpp-seq-2.4.1/src/Bpp/Seq/Io/BppOSequenceStreamReaderFormat.h:79: occured ==> occurred
data/libbpp-seq-2.4.1/src/Bpp/Seq/Io/BppOSequenceWriterFormat.h:80: occured ==> occurred
data/libbpp-seq-2.4.1/src/Bpp/Seq/Io/Clustal.cpp:80: intput ==> input
data/libbpp-seq-2.4.1/src/Bpp/Seq/Io/Clustal.cpp:101: intput ==> input
data/libbpp-seq-2.4.1/src/Bpp/Seq/Io/Fasta.cpp:71: begining ==> beginning
data/libbpp-seq-2.4.1/src/Bpp/Seq/Io/IoSequence.h:55: ouput ==> output
data/libbpp-seq-2.4.1/src/Bpp/Seq/Io/Mase.cpp:143: empy ==> empty
data/libbpp-seq-2.4.1/src/Bpp/Seq/Io/Mase.h:232: preceeded ==> preceded, proceeded
data/libbpp-seq-2.4.1/src/Bpp/Seq/Io/Mase.h:232: preceeded ==> preceded, proceeded
data/libbpp-seq-2.4.1/src/Bpp/Seq/Io/MaseTools.h:56: particularily ==> particularly
data/libbpp-seq-2.4.1/src/Bpp/Seq/Io/NexusTools.h:72: commans ==> commands
data/libbpp-seq-2.4.1/src/Bpp/Seq/Io/PhredPhd.h:107: stram ==> steam, stream, tram
data/libbpp-seq-2.4.1/src/Bpp/Seq/Io/Phylip.h:133: firt ==> first, flirt
data/libbpp-seq-2.4.1/test/test_alphabets.cpp:52: instanciate ==> instantiate
data/libbpp-seq-2.4.1/debian/copyright:376: therefor ==> therefore