data/maffilter-1.3.1+dfsg/CMakeLists.txt:117: fonction ==> function
data/maffilter-1.3.1+dfsg/MafFilter/MafFilter.cpp:1154: Unvalid ==> Invalid
data/maffilter-1.3.1+dfsg/doc/maffilter.texi:60: Miscelaneous ==> Miscellaneous
data/maffilter-1.3.1+dfsg/doc/maffilter.texi:127: Miscelaneous ==> Miscellaneous
data/maffilter-1.3.1+dfsg/doc/maffilter.texi:200: outputing ==> outputting
data/maffilter-1.3.1+dfsg/doc/maffilter.texi:220: refering ==> referring
data/maffilter-1.3.1+dfsg/doc/maffilter.texi:220: writting ==> writing
data/maffilter-1.3.1+dfsg/doc/maffilter.texi:232: optionN ==> option
data/maffilter-1.3.1+dfsg/doc/maffilter.texi:334: Miscelaneous ==> Miscellaneous
data/maffilter-1.3.1+dfsg/doc/maffilter.texi:731: Minumum ==> Minimum
data/maffilter-1.3.1+dfsg/doc/maffilter.texi:758: Minumum ==> Minimum
data/maffilter-1.3.1+dfsg/doc/maffilter.texi:908: follwing ==> following
data/maffilter-1.3.1+dfsg/doc/maffilter.texi:979: containes ==> contains
data/maffilter-1.3.1+dfsg/doc/maffilter.texi:1081: compresion ==> compression
data/maffilter-1.3.1+dfsg/doc/maffilter.texi:1503: frequences ==> frequencies
data/maffilter-1.3.1+dfsg/doc/maffilter.texi:1719: explicitely ==> explicitly
data/maffilter-1.3.1+dfsg/doc/maffilter.texi:1795: charcater ==> character
data/maffilter-1.3.1+dfsg/doc/maffilter.texi:1841: explicitely ==> explicitly
data/maffilter-1.3.1+dfsg/doc/maffilter.texi:1881: aritmetic ==> arithmetic
data/maffilter-1.3.1+dfsg/doc/maffilter.texi:2007: lenght ==> length
data/maffilter-1.3.1+dfsg/doc/maffilter.texi:2023: Miscelaneous ==> Miscellaneous
data/maffilter-1.3.1+dfsg/doc/maffilter.texi:2077: formated ==> formatted
data/maffilter-1.3.1+dfsg/doc/maffilter.texi:2200: informations ==> information
data/maffilter-1.3.1+dfsg/doc/maffilter.texi:2247: contianing ==> containing
data/maffilter-1.3.1+dfsg/doc/maffilter.texi:2248: againt ==> against
data/maffilter-1.3.1+dfsg/doc/maffilter.texi:2295: contianing ==> containing
data/maffilter-1.3.1+dfsg/doc/maffilter.texi:2296: againt ==> against
data/maffilter-1.3.1+dfsg/doc/maffilter.texi:2299: ommitted ==> omitted
data/maffilter-1.3.1+dfsg/doc/maffilter.texi:2337: coodinates ==> coordinates
data/maffilter-1.3.1+dfsg/doc/maffilter.texi:2427: Miscelaneous ==> Miscellaneous
data/maffilter-1.3.1+dfsg/doc/maffilter.texi:2428: Miscelaneous ==> Miscellaneous
data/maffilter-1.3.1+dfsg/doc/maffilter.texi:2438: Miscelaneous ==> Miscellaneous
data/maffilter-1.3.1+dfsg/doc/maffilter.texi:2438: Miscelaneous ==> Miscellaneous
data/maffilter-1.3.1+dfsg/doc/maffilter.texi:2442: convertion ==> conversion
data/maffilter-1.3.1+dfsg/doc/maffilter.texi:2492: Miscelaneous ==> Miscellaneous
data/maffilter-1.3.1+dfsg/docs/index.md:1: inferrence ==> inference
data/maffilter-1.3.1+dfsg/docs/index.md:39: developped ==> developed
data/maffilter-1.3.1+dfsg/docs/index.md:42: Ponting ==> Pointing
data/maffilter-1.3.1+dfsg/docs/index.md:46: developped ==> developed
data/maffilter-1.3.1+dfsg/docs/index.md:49: BA ==> BY, BE
data/maffilter-1.3.1+dfsg/docs/maffilter.html:84: Minumum ==> Minimum
data/maffilter-1.3.1+dfsg/docs/maffilter.html:85: Minumum ==> Minimum
data/maffilter-1.3.1+dfsg/docs/maffilter.html:134: Miscelaneous ==> Miscellaneous
data/maffilter-1.3.1+dfsg/docs/maffilter.html:134: Miscelaneous ==> Miscellaneous
data/maffilter-1.3.1+dfsg/docs/maffilter.html:186: Miscelaneous ==> Miscellaneous
data/maffilter-1.3.1+dfsg/docs/maffilter.html:186: Miscelaneous ==> Miscellaneous
data/maffilter-1.3.1+dfsg/docs/maffilter.html:308: Miscelaneous ==> Miscellaneous
data/maffilter-1.3.1+dfsg/docs/maffilter.html:387: outputing ==> outputting
data/maffilter-1.3.1+dfsg/docs/maffilter.html:405: refering ==> referring
data/maffilter-1.3.1+dfsg/docs/maffilter.html:405: writting ==> writing
data/maffilter-1.3.1+dfsg/docs/maffilter.html:421: optionN ==> option
data/maffilter-1.3.1+dfsg/docs/maffilter.html:537: Miscelaneous ==> Miscellaneous
data/maffilter-1.3.1+dfsg/docs/maffilter.html:537: Miscelaneous ==> Miscellaneous
data/maffilter-1.3.1+dfsg/docs/maffilter.html:1039: Minumum ==> Minimum
data/maffilter-1.3.1+dfsg/docs/maffilter.html:1073: Minumum ==> Minimum
data/maffilter-1.3.1+dfsg/docs/maffilter.html:1259: follwing ==> following
data/maffilter-1.3.1+dfsg/docs/maffilter.html:1343: containes ==> contains
data/maffilter-1.3.1+dfsg/docs/maffilter.html:1466: compresion ==> compression
data/maffilter-1.3.1+dfsg/docs/maffilter.html:2001: frequences ==> frequencies
data/maffilter-1.3.1+dfsg/docs/maffilter.html:2269: explicitely ==> explicitly
data/maffilter-1.3.1+dfsg/docs/maffilter.html:2367: charcater ==> character
data/maffilter-1.3.1+dfsg/docs/maffilter.html:2425: explicitely ==> explicitly
data/maffilter-1.3.1+dfsg/docs/maffilter.html:2476: aritmetic ==> arithmetic
data/maffilter-1.3.1+dfsg/docs/maffilter.html:2640: lenght ==> length
data/maffilter-1.3.1+dfsg/docs/maffilter.html:2658: Miscelaneous ==> Miscellaneous
data/maffilter-1.3.1+dfsg/docs/maffilter.html:2658: Miscelaneous ==> Miscellaneous
data/maffilter-1.3.1+dfsg/docs/maffilter.html:2739: formated ==> formatted
data/maffilter-1.3.1+dfsg/docs/maffilter.html:2892: informations ==> information
data/maffilter-1.3.1+dfsg/docs/maffilter.html:2951: contianing ==> containing
data/maffilter-1.3.1+dfsg/docs/maffilter.html:2952: againt ==> against
data/maffilter-1.3.1+dfsg/docs/maffilter.html:3011: contianing ==> containing
data/maffilter-1.3.1+dfsg/docs/maffilter.html:3012: againt ==> against
data/maffilter-1.3.1+dfsg/docs/maffilter.html:3016: ommitted ==> omitted
data/maffilter-1.3.1+dfsg/docs/maffilter.html:3064: coodinates ==> coordinates
data/maffilter-1.3.1+dfsg/docs/maffilter.html:3178: Miscelaneous ==> Miscellaneous
data/maffilter-1.3.1+dfsg/docs/maffilter.html:3184: Miscelaneous ==> Miscellaneous
data/maffilter-1.3.1+dfsg/docs/maffilter.html:3199: Miscelaneous ==> Miscellaneous
data/maffilter-1.3.1+dfsg/docs/maffilter.html:3199: Miscelaneous ==> Miscellaneous
data/maffilter-1.3.1+dfsg/docs/maffilter.html:3199: Miscelaneous ==> Miscellaneous
data/maffilter-1.3.1+dfsg/docs/maffilter.html:3199: Miscelaneous ==> Miscellaneous
data/maffilter-1.3.1+dfsg/docs/maffilter.html:3205: convertion ==> conversion
data/maffilter-1.3.1+dfsg/docs/maffilter.html:3266: Miscelaneous ==> Miscellaneous
data/maffilter-1.3.1+dfsg/docs/maffilter.html:3266: Miscelaneous ==> Miscellaneous
data/maffilter-1.3.1+dfsg/docs/Manual/AlnFilter2.html:63: follwing ==> following
data/maffilter-1.3.1+dfsg/docs/Manual/Description.html:89: outputing ==> outputting
data/maffilter-1.3.1+dfsg/docs/Manual/Description.html:107: refering ==> referring
data/maffilter-1.3.1+dfsg/docs/Manual/Description.html:107: writting ==> writing
data/maffilter-1.3.1+dfsg/docs/Manual/DistanceBasedPhylogeny.html:89: aritmetic ==> arithmetic
data/maffilter-1.3.1+dfsg/docs/Manual/DistanceEstimation.html:114: charcater ==> character
data/maffilter-1.3.1+dfsg/docs/Manual/DistanceEstimation.html:172: explicitely ==> explicitly
data/maffilter-1.3.1+dfsg/docs/Manual/EntropyFilter.html:64: containes ==> contains
data/maffilter-1.3.1+dfsg/docs/Manual/Exporting.html:57: Miscelaneous ==> Miscellaneous
data/maffilter-1.3.1+dfsg/docs/Manual/Exporting.html:57: Miscelaneous ==> Miscellaneous
data/maffilter-1.3.1+dfsg/docs/Manual/Exporting.html:57: Miscelaneous ==> Miscellaneous
data/maffilter-1.3.1+dfsg/docs/Manual/LiftOver.html:18: Miscelaneous ==> Miscellaneous
data/maffilter-1.3.1+dfsg/docs/Manual/LiftOver.html:18: Miscelaneous ==> Miscellaneous
data/maffilter-1.3.1+dfsg/docs/Manual/LiftOver.html:18: Miscelaneous ==> Miscellaneous
data/maffilter-1.3.1+dfsg/docs/Manual/LiftOver.html:20: Miscelaneous ==> Miscellaneous
data/maffilter-1.3.1+dfsg/docs/Manual/LiftOver.html:20: Miscelaneous ==> Miscellaneous
data/maffilter-1.3.1+dfsg/docs/Manual/LiftOver.html:20: Miscelaneous ==> Miscellaneous
data/maffilter-1.3.1+dfsg/docs/Manual/LiftOver.html:57: Miscelaneous ==> Miscellaneous
data/maffilter-1.3.1+dfsg/docs/Manual/LiftOver.html:57: Miscelaneous ==> Miscellaneous
data/maffilter-1.3.1+dfsg/docs/Manual/LiftOver.html:57: Miscelaneous ==> Miscellaneous
data/maffilter-1.3.1+dfsg/docs/Manual/LiftOver.html:57: Miscelaneous ==> Miscellaneous
data/maffilter-1.3.1+dfsg/docs/Manual/LiftOver.html:57: Miscelaneous ==> Miscellaneous
data/maffilter-1.3.1+dfsg/docs/Manual/LiftOver.html:57: Miscelaneous ==> Miscellaneous
data/maffilter-1.3.1+dfsg/docs/Manual/LiftOver.html:63: convertion ==> conversion
data/maffilter-1.3.1+dfsg/docs/Manual/MaskFilter.html:109: compresion ==> compression
data/maffilter-1.3.1+dfsg/docs/Manual/MinBlockLength.html:60: Minumum ==> Minimum
data/maffilter-1.3.1+dfsg/docs/Manual/MinBlockSize.html:60: Minumum ==> Minimum
data/maffilter-1.3.1+dfsg/docs/Manual/Miscelaneous.html:8: Miscelaneous ==> Miscellaneous
data/maffilter-1.3.1+dfsg/docs/Manual/Miscelaneous.html:10: Miscelaneous ==> Miscellaneous
data/maffilter-1.3.1+dfsg/docs/Manual/Miscelaneous.html:11: Miscelaneous ==> Miscellaneous
data/maffilter-1.3.1+dfsg/docs/Manual/Miscelaneous.html:54: Miscelaneous ==> Miscellaneous
data/maffilter-1.3.1+dfsg/docs/Manual/Miscelaneous.html:60: Miscelaneous ==> Miscellaneous
data/maffilter-1.3.1+dfsg/docs/Manual/ModelFit.html:147: explicitely ==> explicitly
data/maffilter-1.3.1+dfsg/docs/Manual/MsmcOutput.html:100: contianing ==> containing
data/maffilter-1.3.1+dfsg/docs/Manual/MsmcOutput.html:101: againt ==> against
data/maffilter-1.3.1+dfsg/docs/Manual/OutputAlignments.html:63: formated ==> formatted
data/maffilter-1.3.1+dfsg/docs/Manual/OutputCoordinates.html:94: coodinates ==> coordinates
data/maffilter-1.3.1+dfsg/docs/Manual/OutputDistanceMatrices.html:19: Miscelaneous ==> Miscellaneous
data/maffilter-1.3.1+dfsg/docs/Manual/OutputDistanceMatrices.html:19: Miscelaneous ==> Miscellaneous
data/maffilter-1.3.1+dfsg/docs/Manual/OutputDistanceMatrices.html:19: Miscelaneous ==> Miscellaneous
data/maffilter-1.3.1+dfsg/docs/Manual/PlinkOutput.html:106: contianing ==> containing
data/maffilter-1.3.1+dfsg/docs/Manual/PlinkOutput.html:107: againt ==> against
data/maffilter-1.3.1+dfsg/docs/Manual/PlinkOutput.html:111: ommitted ==> omitted
data/maffilter-1.3.1+dfsg/docs/Manual/Run.html:64: optionN ==> option
data/maffilter-1.3.1+dfsg/docs/Manual/SiteFrequencySpectrum.html:115: frequences ==> frequencies
data/maffilter-1.3.1+dfsg/docs/Manual/SystemCall.html:18: Miscelaneous ==> Miscellaneous
data/maffilter-1.3.1+dfsg/docs/Manual/SystemCall.html:18: Miscelaneous ==> Miscellaneous
data/maffilter-1.3.1+dfsg/docs/Manual/SystemCall.html:18: Miscelaneous ==> Miscellaneous
data/maffilter-1.3.1+dfsg/docs/Manual/SystemCall.html:56: Miscelaneous ==> Miscellaneous
data/maffilter-1.3.1+dfsg/docs/Manual/SystemCall.html:56: Miscelaneous ==> Miscellaneous
data/maffilter-1.3.1+dfsg/docs/Manual/SystemCall.html:56: Miscelaneous ==> Miscellaneous
data/maffilter-1.3.1+dfsg/docs/Manual/TreeFilter.html:89: lenght ==> length
data/maffilter-1.3.1+dfsg/docs/Manual/VcfOutput.html:99: informations ==> information
data/maffilter-1.3.1+dfsg/docs/Manual/index.html:85: Minumum ==> Minimum
data/maffilter-1.3.1+dfsg/docs/Manual/index.html:86: Minumum ==> Minimum
data/maffilter-1.3.1+dfsg/docs/Manual/index.html:135: Miscelaneous ==> Miscellaneous
data/maffilter-1.3.1+dfsg/docs/Manual/index.html:135: Miscelaneous ==> Miscellaneous
data/maffilter-1.3.1+dfsg/docs/Manual/index.html:135: Miscelaneous ==> Miscellaneous
data/maffilter-1.3.1+dfsg/examples/UCSC46ways/MafFilterDistance_anaysis.R:6: hist ==> heist, his
data/maffilter-1.3.1+dfsg/examples/Umaydis/MafFilterNonCoding_analysis.R:2: Analize ==> Analyze
data/maffilter-1.3.1+dfsg/examples/Umaydis/MafFilterNonCoding_analysis.R:5: hist ==> heist, his
data/maffilter-1.3.1+dfsg/examples/Umaydis/MafFilterNonCoding_analysis.R:13: hist ==> heist, his
data/maffilter-1.3.1+dfsg/examples/Umaydis/MafFilterNonCoding_analysis.R:29: hist ==> heist, his
data/maffilter-1.3.1+dfsg/examples/Umaydis/MafFilterNonCoding_analysis.R:55: hist ==> heist, his
data/maffilter-1.3.1+dfsg/examples/Umaydis/MafFilterNonCoding_analysis.R:60: hist ==> heist, his
data/maffilter-1.3.1+dfsg/examples/Umaydis/MafFilterNonCoding_analysis.R:81: lengh ==> length
data/maffilter-1.3.1+dfsg/examples/Umaydis/MafFilterNonCoding_analysis.R:96: hist ==> heist, his
data/maffilter-1.3.1+dfsg/examples/Umaydis/MafFilterNonCoding_analysis.R:114: hist ==> heist, his
data/maffilter-1.3.1+dfsg/examples/Umaydis/MafFilterNonCoding_analysis.R:144: hist ==> heist, his
data/maffilter-1.3.1+dfsg/examples/Umaydis/Umaydis.gff3:217: formate ==> format
data/maffilter-1.3.1+dfsg/examples/Umaydis/Umaydis.gff3:218: formate ==> format
data/maffilter-1.3.1+dfsg/examples/Umaydis/Umaydis.gff3:219: formate ==> format
data/maffilter-1.3.1+dfsg/examples/Umaydis/Umaydis.gff3:1185: ser ==> set
data/maffilter-1.3.1+dfsg/examples/Umaydis/Umaydis.gff3:1186: ser ==> set
data/maffilter-1.3.1+dfsg/examples/Umaydis/Umaydis.gff3:2626: ser ==> set
data/maffilter-1.3.1+dfsg/examples/Umaydis/Umaydis.gff3:2627: ser ==> set
data/maffilter-1.3.1+dfsg/examples/Umaydis/Umaydis.gff3:4220: ser ==> set
data/maffilter-1.3.1+dfsg/examples/Umaydis/Umaydis.gff3:4221: ser ==> set
data/maffilter-1.3.1+dfsg/examples/Umaydis/Umaydis.gff3:4224: ser ==> set
data/maffilter-1.3.1+dfsg/examples/Umaydis/Umaydis.gff3:4225: ser ==> set
data/maffilter-1.3.1+dfsg/examples/Umaydis/Umaydis.gff3:5427: formate ==> format
data/maffilter-1.3.1+dfsg/examples/Umaydis/Umaydis.gff3:5428: formate ==> format
data/maffilter-1.3.1+dfsg/examples/Umaydis/Umaydis.gff3:5429: formate ==> format
data/maffilter-1.3.1+dfsg/examples/Umaydis/Umaydis.gff3:5728: ser ==> set
data/maffilter-1.3.1+dfsg/examples/Umaydis/Umaydis.gff3:5729: ser ==> set
data/maffilter-1.3.1+dfsg/examples/Umaydis/Umaydis.gff3:6385: ser ==> set
data/maffilter-1.3.1+dfsg/examples/Umaydis/Umaydis.gff3:6386: ser ==> set
data/maffilter-1.3.1+dfsg/examples/Umaydis/Umaydis.gff3:6448: ser ==> set
data/maffilter-1.3.1+dfsg/examples/Umaydis/Umaydis.gff3:6449: ser ==> set
data/maffilter-1.3.1+dfsg/examples/Umaydis/Umaydis.gff3:8292: ser ==> set
data/maffilter-1.3.1+dfsg/examples/Umaydis/Umaydis.gff3:8293: ser ==> set
data/maffilter-1.3.1+dfsg/examples/Umaydis/Umaydis.gff3:8294: ser ==> set
data/maffilter-1.3.1+dfsg/examples/Umaydis/Umaydis.gff3:10245: ser ==> set
data/maffilter-1.3.1+dfsg/examples/Umaydis/Umaydis.gff3:10246: ser ==> set
data/maffilter-1.3.1+dfsg/examples/Umaydis/Umaydis.gff3:10247: ser ==> set
data/maffilter-1.3.1+dfsg/examples/Umaydis/Umaydis.gff3:10248: ser ==> set
data/maffilter-1.3.1+dfsg/examples/Umaydis/Umaydis.gff3:12303: ser ==> set
data/maffilter-1.3.1+dfsg/examples/Umaydis/Umaydis.gff3:12304: ser ==> set
data/maffilter-1.3.1+dfsg/examples/Umaydis/Umaydis.gff3:12305: ser ==> set
data/maffilter-1.3.1+dfsg/examples/Umaydis/Umaydis.gff3:12306: ser ==> set
data/maffilter-1.3.1+dfsg/examples/Umaydis/Umaydis.gff3:12744: ser ==> set
data/maffilter-1.3.1+dfsg/examples/Umaydis/Umaydis.gff3:12745: ser ==> set
data/maffilter-1.3.1+dfsg/examples/Umaydis/Umaydis.gff3:13058: ser ==> set
data/maffilter-1.3.1+dfsg/examples/Umaydis/Umaydis.gff3:13059: ser ==> set
data/maffilter-1.3.1+dfsg/examples/Umaydis/Umaydis.gff3:13111: ser ==> set
data/maffilter-1.3.1+dfsg/examples/Umaydis/Umaydis.gff3:13112: ser ==> set
data/maffilter-1.3.1+dfsg/examples/Umaydis/Umaydis.gff3:13211: ser ==> set
data/maffilter-1.3.1+dfsg/examples/Umaydis/Umaydis.gff3:13212: ser ==> set
data/maffilter-1.3.1+dfsg/examples/Umaydis/Umaydis.gff3:13360: ser ==> set
data/maffilter-1.3.1+dfsg/examples/Umaydis/Umaydis.gff3:13361: ser ==> set
data/maffilter-1.3.1+dfsg/examples/Umaydis/Umaydis.gff3:13964: ser ==> set
data/maffilter-1.3.1+dfsg/examples/Umaydis/Umaydis.gff3:13965: ser ==> set
data/maffilter-1.3.1+dfsg/examples/Umaydis/Umaydis.gff3:15126: ser ==> set
data/maffilter-1.3.1+dfsg/examples/Umaydis/Umaydis.gff3:15127: ser ==> set
data/maffilter-1.3.1+dfsg/examples/Umaydis/Umaydis.gff3:15633: ser ==> set
data/maffilter-1.3.1+dfsg/examples/Umaydis/Umaydis.gff3:15634: ser ==> set
data/maffilter-1.3.1+dfsg/examples/Umaydis/Umaydis.gff3:15635: ser ==> set
data/maffilter-1.3.1+dfsg/examples/Umaydis/Umaydis.gff3:16478: FO ==> OF, FOR
data/maffilter-1.3.1+dfsg/examples/Umaydis/Umaydis.gff3:16479: FO ==> OF, FOR
data/maffilter-1.3.1+dfsg/examples/Umaydis/Umaydis.gff3:16480: FO ==> OF, FOR
data/maffilter-1.3.1+dfsg/examples/Umaydis/Umaydis.gff3:16481: FO ==> OF, FOR