data/milib-1.12/CHANGELOG:66: differnet ==> different
data/milib-1.12/CHANGELOG:123: Addded ==> Added
data/milib-1.12/CHANGELOG:167: Bitap ==> Bitmap
data/milib-1.12/CHANGELOG:180: inforamtion ==> information
data/milib-1.12/CHANGELOG:215: implemeting ==> implementing
data/milib-1.12/src/main/java/com/milaboratory/core/Range.java:257: ot ==> to, of, or
data/milib-1.12/src/main/java/com/milaboratory/core/alignment/AffineGapAlignmentScoring.java:106: lenth ==> length
data/milib-1.12/src/main/java/com/milaboratory/core/alignment/AlignerCustom.java:30: programing ==> programming
data/milib-1.12/src/main/java/com/milaboratory/core/alignment/CachedIntArray.java:28: sie ==> size, sigh
data/milib-1.12/src/main/java/com/milaboratory/core/alignment/MultiAlignmentHelper.java:325: aCount ==> account
data/milib-1.12/src/main/java/com/milaboratory/core/alignment/MultiAlignmentHelper.java:328: aCount ==> account
data/milib-1.12/src/main/java/com/milaboratory/core/alignment/MultiAlignmentHelper.java:334: aCount ==> account
data/milib-1.12/src/main/java/com/milaboratory/core/alignment/MultiAlignmentHelper.java:345: aCount ==> account
data/milib-1.12/src/main/java/com/milaboratory/core/alignment/MultiAlignmentHelper.java:354: aCount ==> account
data/milib-1.12/src/main/java/com/milaboratory/core/alignment/MultiAlignmentHelper.java:360: aCount ==> account
data/milib-1.12/src/main/java/com/milaboratory/core/alignment/MultiAlignmentHelper.java:391: aCount ==> account
data/milib-1.12/src/main/java/com/milaboratory/core/alignment/MultiAlignmentHelper.java:392: aCount ==> account
data/milib-1.12/src/main/java/com/milaboratory/core/alignment/MultiAlignmentHelper.java:393: aCount ==> account
data/milib-1.12/src/main/java/com/milaboratory/core/alignment/MultiAlignmentHelper.java:394: aCount ==> account
data/milib-1.12/src/main/java/com/milaboratory/core/alignment/MultiAlignmentHelper.java:395: aCount ==> account
data/milib-1.12/src/main/java/com/milaboratory/core/alignment/MultiAlignmentHelper.java:398: aCount ==> account
data/milib-1.12/src/main/java/com/milaboratory/core/alignment/MultiAlignmentHelper.java:401: aCount ==> account
data/milib-1.12/src/main/java/com/milaboratory/core/alignment/MultiAlignmentHelper.java:403: aCount ==> account
data/milib-1.12/src/main/java/com/milaboratory/core/alignment/MultiAlignmentHelper.java:413: aCount ==> account
data/milib-1.12/src/main/java/com/milaboratory/core/alignment/MultiAlignmentHelper.java:417: aCount ==> account
data/milib-1.12/src/main/java/com/milaboratory/core/alignment/MultiAlignmentHelper.java:425: aCount ==> account
data/milib-1.12/src/main/java/com/milaboratory/core/alignment/MultiAlignmentHelper.java:437: aCount ==> account
data/milib-1.12/src/main/java/com/milaboratory/core/alignment/MultiAlignmentHelper.java:454: aCount ==> account
data/milib-1.12/src/main/java/com/milaboratory/core/alignment/MultiAlignmentHelper.java:466: aCount ==> account
data/milib-1.12/src/main/java/com/milaboratory/core/alignment/MultiAlignmentHelper.java:514: aCount ==> account
data/milib-1.12/src/main/java/com/milaboratory/core/alignment/MultiAlignmentHelper.java:515: aCount ==> account
data/milib-1.12/src/main/java/com/milaboratory/core/alignment/MultiAlignmentHelper.java:516: aCount ==> account
data/milib-1.12/src/main/java/com/milaboratory/core/alignment/MultiAlignmentHelper.java:517: aCount ==> account
data/milib-1.12/src/main/java/com/milaboratory/core/alignment/blast/BlastDB.java:88: nin ==> inn, min, bin, nine
data/milib-1.12/src/main/java/com/milaboratory/core/alignment/kaligner1/KAligner.java:69: fo ==> of, for
data/milib-1.12/src/main/java/com/milaboratory/core/alignment/kaligner2/KMappingHit2.java:81: boundaryI ==> boundary
data/milib-1.12/src/main/java/com/milaboratory/core/alignment/kaligner2/KMappingHit2.java:84: boundaryI ==> boundary
data/milib-1.12/src/main/java/com/milaboratory/core/alignment/kaligner2/KMappingHit2.java:84: boundaryI ==> boundary
data/milib-1.12/src/main/java/com/milaboratory/core/alignment/kaligner2/KMappingHit2.java:85: boundaryI ==> boundary
data/milib-1.12/src/main/java/com/milaboratory/core/alignment/kaligner2/KMappingHit2.java:86: boundaryI ==> boundary
data/milib-1.12/src/main/java/com/milaboratory/core/io/util/FileIndexBuilder.java:156: destryed ==> destroyed
data/milib-1.12/src/main/java/com/milaboratory/core/merger/MismatchOnlyPairedReadMerger.java:100: fo ==> of, for
data/milib-1.12/src/main/java/com/milaboratory/core/merger/MismatchOnlyPairedReadMerger.java:100: Bitap ==> Bitmap
data/milib-1.12/src/main/java/com/milaboratory/core/merger/MismatchOnlyPairedReadMerger.java:136: bitap ==> bitmap
data/milib-1.12/src/main/java/com/milaboratory/core/motif/BitapPattern.java:21: bitap ==> bitmap
data/milib-1.12/src/main/java/com/milaboratory/core/motif/BitapPattern.java:29: bitap ==> bitmap
data/milib-1.12/src/main/java/com/milaboratory/core/mutations/IO.java:23: ser ==> set
data/milib-1.12/src/main/java/com/milaboratory/core/mutations/Mutations.java:776: occurance ==> occurrence
data/milib-1.12/src/main/java/com/milaboratory/core/sequence/Alphabet.java:223: represenatation ==> representation
data/milib-1.12/src/main/java/com/milaboratory/core/tree/NeighborhoodIterator.java:80: Setts ==> Sets
data/milib-1.12/src/main/java/com/milaboratory/util/AtomicEnumHistogram.java:29: hist ==> heist, his
data/milib-1.12/src/main/java/com/milaboratory/util/AtomicEnumHistogram.java:33: hist ==> heist, his
data/milib-1.12/src/main/java/com/milaboratory/util/AtomicEnumHistogram.java:38: hist ==> heist, his
data/milib-1.12/src/main/java/com/milaboratory/util/AtomicEnumHistogram.java:38: hist ==> heist, his
data/milib-1.12/src/main/java/com/milaboratory/util/AtomicEnumHistogram.java:40: hist ==> heist, his
data/milib-1.12/src/main/java/com/milaboratory/util/AtomicEnumHistogram.java:53: hist ==> heist, his
data/milib-1.12/src/main/java/com/milaboratory/util/AtomicEnumHistogram.java:55: hist ==> heist, his
data/milib-1.12/src/main/java/com/milaboratory/util/AtomicEnumHistogram.java:78: hist ==> heist, his
data/milib-1.12/src/main/java/com/milaboratory/util/AtomicEnumHistogram.java:80: hist ==> heist, his
data/milib-1.12/src/main/java/com/milaboratory/util/AtomicEnumHistogram.java:82: hist ==> heist, his
data/milib-1.12/src/main/java/com/milaboratory/util/AtomicEnumHistogram.java:82: hist ==> heist, his
data/milib-1.12/src/main/java/com/milaboratory/util/AtomicHistogram.java:32: hist ==> heist, his
data/milib-1.12/src/main/java/com/milaboratory/util/AtomicHistogram.java:36: hist ==> heist, his
data/milib-1.12/src/main/java/com/milaboratory/util/AtomicHistogram.java:59: hist ==> heist, his
data/milib-1.12/src/main/java/com/milaboratory/util/AtomicHistogram.java:67: hist ==> heist, his
data/milib-1.12/src/main/java/com/milaboratory/util/AtomicHistogram.java:69: hist ==> heist, his
data/milib-1.12/src/main/java/com/milaboratory/util/AtomicHistogram.java:75: hist ==> heist, his
data/milib-1.12/src/main/java/com/milaboratory/util/AtomicHistogram.java:76: hist ==> heist, his
data/milib-1.12/src/main/java/com/milaboratory/util/AtomicHistogram.java:83: hist ==> heist, his
data/milib-1.12/src/main/java/com/milaboratory/util/AtomicHistogram.java:84: hist ==> heist, his
data/milib-1.12/src/main/java/com/milaboratory/util/AtomicHistogram.java:85: hist ==> heist, his
data/milib-1.12/src/main/java/com/milaboratory/util/AtomicHistogram.java:127: hist ==> heist, his
data/milib-1.12/src/main/java/com/milaboratory/util/AtomicHistogram.java:130: hist ==> heist, his
data/milib-1.12/src/main/java/com/milaboratory/util/AtomicHistogram.java:133: hist ==> heist, his
data/milib-1.12/src/main/java/com/milaboratory/util/AtomicHistogram.java:133: hist ==> heist, his
data/milib-1.12/src/main/java/com/milaboratory/util/BitArray.java:80: ba ==> by, be
data/milib-1.12/src/main/java/com/milaboratory/util/BitArray.java:81: ba ==> by, be
data/milib-1.12/src/main/java/com/milaboratory/util/BitArray.java:84: ba ==> by, be
data/milib-1.12/src/main/java/com/milaboratory/util/HashFunctions.java:207: endianess ==> endianness
data/milib-1.12/src/main/java/com/milaboratory/util/HashFunctions.java:260: endianess ==> endianness
data/milib-1.12/src/main/java/com/milaboratory/util/HashFunctions.java:297: endianess ==> endianness
data/milib-1.12/src/main/java/com/milaboratory/util/LightFileDescriptor.java:94: cant ==> can't
data/milib-1.12/src/main/java/com/milaboratory/util/Randomizer.java:86: fo ==> of, for
data/milib-1.12/src/main/java/com/milaboratory/util/Randomizer.java:88: fo ==> of, for
data/milib-1.12/src/main/java/com/milaboratory/util/Randomizer.java:90: fo ==> of, for
data/milib-1.12/src/main/java/com/milaboratory/util/Sorter.java:214: fo ==> of, for
data/milib-1.12/src/main/java/com/milaboratory/util/Sorter.java:216: fo ==> of, for
data/milib-1.12/src/main/java/com/milaboratory/util/Sorter.java:217: fo ==> of, for
data/milib-1.12/src/test/java/com/milaboratory/core/alignment/AlignmentHelperTest.java:26: alignemnt ==> alignment
data/milib-1.12/src/test/java/com/milaboratory/core/alignment/AlignmentHelperTest.java:27: alignemnt ==> alignment
data/milib-1.12/src/test/java/com/milaboratory/core/alignment/blast/BlastAlignerTest.java:29: ba ==> by, be
data/milib-1.12/src/test/java/com/milaboratory/core/alignment/blast/BlastAlignerTest.java:33: ba ==> by, be
data/milib-1.12/src/test/java/com/milaboratory/core/alignment/blast/BlastAlignerTest.java:34: ba ==> by, be
data/milib-1.12/src/test/java/com/milaboratory/core/alignment/blast/BlastAlignerTest.java:38: ba ==> by, be
data/milib-1.12/src/test/java/com/milaboratory/core/alignment/blast/BlastAlignerTest.java:67: trys ==> tries
data/milib-1.12/src/test/java/com/milaboratory/core/alignment/blast/BlastAlignerTest.java:74: ba ==> by, be
data/milib-1.12/src/test/java/com/milaboratory/core/alignment/blast/BlastAlignerTest.java:75: ba ==> by, be
data/milib-1.12/src/test/java/com/milaboratory/core/alignment/blast/BlastAlignerTest.java:80: ba ==> by, be
data/milib-1.12/src/test/java/com/milaboratory/core/alignment/blast/BlastAlignerTest.java:88: trys ==> tries
data/milib-1.12/src/test/java/com/milaboratory/core/alignment/blast/BlastAlignerTest.java:99: ba ==> by, be
data/milib-1.12/src/test/java/com/milaboratory/core/alignment/kaligner2/KAligner2Test.java:437: paramsS ==> params
data/milib-1.12/src/test/java/com/milaboratory/core/alignment/kaligner2/KAligner2Test.java:451: paramsS ==> params
data/milib-1.12/src/test/java/com/milaboratory/core/mutations/MutationsUtilTest.java:355: tihs ==> this
data/milib-1.12/src/test/java/com/milaboratory/core/mutations/MutationsUtilTest.java:356: tihs ==> this
data/milib-1.12/src/test/java/com/milaboratory/core/mutations/MutationsUtilTest.java:357: tihs ==> this
data/milib-1.12/src/test/java/com/milaboratory/util/AtomicEnumHistogramTest.java:27: hist ==> heist, his
data/milib-1.12/src/test/java/com/milaboratory/util/AtomicEnumHistogramTest.java:28: hist ==> heist, his
data/milib-1.12/src/test/java/com/milaboratory/util/AtomicEnumHistogramTest.java:29: hist ==> heist, his
data/milib-1.12/src/test/java/com/milaboratory/util/AtomicEnumHistogramTest.java:30: hist ==> heist, his
data/milib-1.12/src/test/java/com/milaboratory/util/AtomicEnumHistogramTest.java:31: hist ==> heist, his
data/milib-1.12/src/test/java/com/milaboratory/util/AtomicEnumHistogramTest.java:33: hist ==> heist, his
data/milib-1.12/src/test/java/com/milaboratory/util/AtomicEnumHistogramTest.java:34: hist ==> heist, his
data/milib-1.12/src/test/java/com/milaboratory/util/AtomicEnumHistogramTest.java:36: hist ==> heist, his
data/milib-1.12/src/test/java/com/milaboratory/util/AtomicHistogramTest.java:32: hist ==> heist, his
data/milib-1.12/src/test/java/com/milaboratory/util/AtomicHistogramTest.java:34: hist ==> heist, his
data/milib-1.12/src/test/java/com/milaboratory/util/AtomicHistogramTest.java:35: hist ==> heist, his
data/milib-1.12/src/test/java/com/milaboratory/util/AtomicHistogramTest.java:36: hist ==> heist, his
data/milib-1.12/src/test/java/com/milaboratory/util/AtomicHistogramTest.java:37: hist ==> heist, his
data/milib-1.12/src/test/java/com/milaboratory/util/AtomicHistogramTest.java:38: hist ==> heist, his
data/milib-1.12/src/test/java/com/milaboratory/util/AtomicHistogramTest.java:39: hist ==> heist, his
data/milib-1.12/src/test/java/com/milaboratory/util/AtomicHistogramTest.java:40: hist ==> heist, his
data/milib-1.12/src/test/java/com/milaboratory/util/AtomicHistogramTest.java:42: hist ==> heist, his
data/milib-1.12/src/test/java/com/milaboratory/util/AtomicHistogramTest.java:43: hist ==> heist, his
data/milib-1.12/src/test/java/com/milaboratory/util/AtomicHistogramTest.java:44: hist ==> heist, his
data/milib-1.12/src/test/java/com/milaboratory/util/AtomicHistogramTest.java:49: hist ==> heist, his
data/milib-1.12/src/test/java/com/milaboratory/util/AtomicHistogramTest.java:51: hist ==> heist, his
data/milib-1.12/src/test/java/com/milaboratory/util/AtomicHistogramTest.java:52: hist ==> heist, his
data/milib-1.12/src/test/java/com/milaboratory/util/AtomicHistogramTest.java:53: hist ==> heist, his
data/milib-1.12/src/test/java/com/milaboratory/util/AtomicHistogramTest.java:54: hist ==> heist, his
data/milib-1.12/src/test/java/com/milaboratory/util/AtomicHistogramTest.java:56: hist ==> heist, his
data/milib-1.12/src/test/java/com/milaboratory/util/AtomicHistogramTest.java:57: hist ==> heist, his
data/milib-1.12/src/test/java/com/milaboratory/util/AtomicHistogramTest.java:58: hist ==> heist, his
data/milib-1.12/src/test/java/com/milaboratory/util/Bit2ArrayTest.java:40: ba ==> by, be
data/milib-1.12/src/test/java/com/milaboratory/util/Bit2ArrayTest.java:43: ba ==> by, be
data/milib-1.12/src/test/java/com/milaboratory/util/Bit2ArrayTest.java:45: ba ==> by, be
data/milib-1.12/src/test/java/com/milaboratory/util/Bit2ArrayTest.java:45: ba ==> by, be
data/milib-1.12/src/test/java/com/milaboratory/util/Bit2ArrayTest.java:45: ba ==> by, be
data/milib-1.12/src/test/java/com/milaboratory/util/Bit2ArrayTest.java:48: ba ==> by, be
data/milib-1.12/src/test/java/com/milaboratory/util/Bit2ArrayTest.java:58: ba ==> by, be
data/milib-1.12/src/test/java/com/milaboratory/util/Bit2ArrayTest.java:60: ba ==> by, be
data/milib-1.12/src/test/java/com/milaboratory/util/Bit2ArrayTest.java:63: ba ==> by, be
data/milib-1.12/src/test/java/com/milaboratory/util/Bit2ArrayTest.java:65: ba ==> by, be
data/milib-1.12/src/test/java/com/milaboratory/util/Bit2ArrayTest.java:65: ba ==> by, be
data/milib-1.12/src/test/java/com/milaboratory/util/Bit2ArrayTest.java:65: ba ==> by, be
data/milib-1.12/src/test/java/com/milaboratory/util/Bit2ArrayTest.java:68: ba ==> by, be
data/milib-1.12/src/test/java/com/milaboratory/util/Bit2ArrayTest.java:78: ba ==> by, be
data/milib-1.12/src/test/java/com/milaboratory/util/Bit2ArrayTest.java:81: ba ==> by, be
data/milib-1.12/src/test/java/com/milaboratory/util/Bit2ArrayTest.java:86: ba ==> by, be
data/milib-1.12/src/test/java/com/milaboratory/util/Bit2ArrayTest.java:89: ba ==> by, be
data/milib-1.12/src/test/java/com/milaboratory/util/Bit2ArrayTest.java:92: ba ==> by, be
data/milib-1.12/src/test/resources/sequences/sample_r1.fastq:4: BA ==> BY, BE