data/mothur-1.44.3/Ubuntu_18_Build.txt:3: dependancies ==> dependencies
data/mothur-1.44.3/TestBatches/align.seqs/batch:3: seaches ==> searches
data/mothur-1.44.3/TestBatches/classify.seqs/batch:5: seaches ==> searches
data/mothur-1.44.3/TestMothur/catch.hpp:4737: Argment ==> Argument
data/mothur-1.44.3/TestMothur/catch.hpp:7437: alpha-numeric ==> alphanumeric
data/mothur-1.44.3/TestMothur/testoptirefmatrix.cpp:46: inbetween ==> between, in between
data/mothur-1.44.3/TestMothur/testoptirefmatrix.cpp:70: inbetween ==> between, in between
data/mothur-1.44.3/TestMothur/testoptirefmatrix.cpp:84: inbetween ==> between, in between
data/mothur-1.44.3/TestMothur/testoptirefmatrix.cpp:99: inbetween ==> between, in between
data/mothur-1.44.3/TestMothur/testcontainers/testsharedrabundfloatvectors.cpp:33: Otu ==> Out
data/mothur-1.44.3/TestMothur/testcontainers/testsharedrabundfloatvectors.cpp:38: Otu ==> Out
data/mothur-1.44.3/TestMothur/testcontainers/testsharedrabundfloatvectors.cpp:51: Otu ==> Out
data/mothur-1.44.3/TestMothur/testcontainers/testsharedrabundvectors.cpp:33: Otu ==> Out
data/mothur-1.44.3/TestMothur/testcontainers/testsharedrabundvectors.cpp:38: Otu ==> Out
data/mothur-1.44.3/TestMothur/testcontainers/testsharedrabundvectors.cpp:51: Otu ==> Out
data/mothur-1.44.3/source/cluster.cpp:139: hte ==> the
data/mothur-1.44.3/source/collectdisplay.h:50: datas ==> data
data/mothur-1.44.3/source/collectorscurvedata.h:41: commpare ==> compare
data/mothur-1.44.3/source/commandfactory.cpp:218: otu ==> out
data/mothur-1.44.3/source/commandfactory.cpp:218: otu ==> out
data/mothur-1.44.3/source/commandfactory.cpp:227: otu ==> out
data/mothur-1.44.3/source/commandfactory.cpp:227: otu ==> out
data/mothur-1.44.3/source/commandfactory.cpp:284: otu ==> out
data/mothur-1.44.3/source/commandfactory.cpp:284: otu ==> out
data/mothur-1.44.3/source/commandfactory.cpp:413: fucntions ==> functions
data/mothur-1.44.3/source/commandfactory.cpp:477: otu ==> out
data/mothur-1.44.3/source/commandfactory.cpp:486: otu ==> out
data/mothur-1.44.3/source/commandfactory.cpp:529: otu ==> out
data/mothur-1.44.3/source/commandfactory.cpp:577: fucntions ==> functions
data/mothur-1.44.3/source/commandfactory.cpp:653: otu ==> out
data/mothur-1.44.3/source/commandfactory.cpp:662: otu ==> out
data/mothur-1.44.3/source/commandfactory.cpp:705: otu ==> out
data/mothur-1.44.3/source/commandfactory.cpp:829: commmands ==> commands
data/mothur-1.44.3/source/commandfactory.cpp:831: commmands ==> commands
data/mothur-1.44.3/source/commandparameter.h:24: atLeast ==> at least
data/mothur-1.44.3/source/commandparameter.h:25: atLeast ==> at least
data/mothur-1.44.3/source/commandparameter.h:26: atLeast ==> at least
data/mothur-1.44.3/source/commandparameter.h:27: atLeast ==> at least
data/mothur-1.44.3/source/commandparameter.h:39: choosen ==> chosen
data/mothur-1.44.3/source/consensus.h:35: occured ==> occurred
data/mothur-1.44.3/source/currentfile.h:206: otu ==> out
data/mothur-1.44.3/source/heatmap.cpp:79: backround ==> background
data/mothur-1.44.3/source/heatmap.cpp:176: backround ==> background
data/mothur-1.44.3/source/heatmap.cpp:183: OTU ==> OUT
data/mothur-1.44.3/source/heatmap.cpp:354: otu ==> out
data/mothur-1.44.3/source/heatmap.cpp:483: backround ==> background
data/mothur-1.44.3/source/heatmap.cpp:490: OTU ==> OUT
data/mothur-1.44.3/source/heatmap.cpp:711: otu ==> out
data/mothur-1.44.3/source/heatmapsim.cpp:49: backround ==> background
data/mothur-1.44.3/source/heatmapsim.cpp:132: backround ==> background
data/mothur-1.44.3/source/linearalgebra.cpp:32: ans ==> and
data/mothur-1.44.3/source/linearalgebra.cpp:36: ans ==> and
data/mothur-1.44.3/source/linearalgebra.cpp:40: ans ==> and
data/mothur-1.44.3/source/linearalgebra.cpp:40: ans ==> and
data/mothur-1.44.3/source/linearalgebra.cpp:74: ser ==> set
data/mothur-1.44.3/source/linearalgebra.cpp:81: ser ==> set
data/mothur-1.44.3/source/linearalgebra.cpp:83: ser ==> set
data/mothur-1.44.3/source/linearalgebra.cpp:85: ser ==> set
data/mothur-1.44.3/source/linearalgebra.cpp:1050: ans ==> and
data/mothur-1.44.3/source/linearalgebra.cpp:1056: ans ==> and
data/mothur-1.44.3/source/linearalgebra.cpp:1058: ans ==> and
data/mothur-1.44.3/source/linearalgebra.cpp:1838: dum ==> dumb
data/mothur-1.44.3/source/linearalgebra.cpp:1839: dum ==> dumb
data/mothur-1.44.3/source/linearalgebra.cpp:1840: dum ==> dumb
data/mothur-1.44.3/source/linearalgebra.cpp:1846: dum ==> dumb
data/mothur-1.44.3/source/linearalgebra.cpp:1848: dum ==> dumb
data/mothur-1.44.3/source/linearalgebra.cpp:1858: dum ==> dumb
data/mothur-1.44.3/source/linearalgebra.cpp:1859: dum ==> dumb
data/mothur-1.44.3/source/linearalgebra.cpp:1948: dum ==> dumb
data/mothur-1.44.3/source/linearalgebra.cpp:1949: dum ==> dumb
data/mothur-1.44.3/source/linearalgebra.cpp:1950: dum ==> dumb
data/mothur-1.44.3/source/linearalgebra.cpp:1956: dum ==> dumb
data/mothur-1.44.3/source/linearalgebra.cpp:1958: dum ==> dumb
data/mothur-1.44.3/source/linearalgebra.cpp:1968: dum ==> dumb
data/mothur-1.44.3/source/linearalgebra.cpp:1969: dum ==> dumb
data/mothur-1.44.3/source/linearalgebra.cpp:2075: OTU ==> OUT
data/mothur-1.44.3/source/linearalgebra.cpp:2078: OTU ==> OUT
data/mothur-1.44.3/source/linearalgebra.cpp:2083: OTU ==> OUT
data/mothur-1.44.3/source/linearalgebra.cpp:2089: OTU ==> OUT
data/mothur-1.44.3/source/mothur.h:13: incudes ==> includes
data/mothur-1.44.3/source/mothur.h:158: OTU ==> OUT
data/mothur-1.44.3/source/mothur.h:158: OTU ==> OUT
data/mothur-1.44.3/source/mothur.h:163: otu ==> out
data/mothur-1.44.3/source/mothur.h:186: otu ==> out
data/mothur-1.44.3/source/mothur.h:186: otu ==> out
data/mothur-1.44.3/source/mothur.h:187: otu ==> out
data/mothur-1.44.3/source/mothur.h:187: otu ==> out
data/mothur-1.44.3/source/mothur.h:189: otu ==> out
data/mothur-1.44.3/source/mothur.h:189: otu ==> out
data/mothur-1.44.3/source/mothur.h:191: otu ==> out
data/mothur-1.44.3/source/mothur.h:194: otu ==> out
data/mothur-1.44.3/source/mothur.h:194: otu ==> out
data/mothur-1.44.3/source/mothur.h:195: otu ==> out
data/mothur-1.44.3/source/mothur.h:195: otu ==> out
data/mothur-1.44.3/source/mothur.h:201: otu ==> out
data/mothur-1.44.3/source/mothur.h:202: otu ==> out
data/mothur-1.44.3/source/mothur.h:203: otu ==> out
data/mothur-1.44.3/source/mothur.h:208: otu ==> out
data/mothur-1.44.3/source/myseqdist.cpp:314: Lauch ==> Launch
data/mothur-1.44.3/source/nast.cpp:335: alignemnt ==> alignment
data/mothur-1.44.3/source/needlemanoverlap.cpp:28: openning ==> opening
data/mothur-1.44.3/source/needlemanoverlap.cpp:31: poiters ==> pointers
data/mothur-1.44.3/source/needlemanoverlap.cpp:36: poiters ==> pointers
data/mothur-1.44.3/source/opticluster.cpp:86: OTU ==> OUT
data/mothur-1.44.3/source/opticluster.cpp:86: OTU ==> OUT
data/mothur-1.44.3/source/opticluster.cpp:86: OTU ==> OUT
data/mothur-1.44.3/source/opticluster.cpp:86: OTU ==> OUT
data/mothur-1.44.3/source/opticluster.cpp:87: OTU ==> OUT
data/mothur-1.44.3/source/opticluster.cpp:132: otu ==> out
data/mothur-1.44.3/source/opticluster.cpp:157: OTU ==> OUT
data/mothur-1.44.3/source/opticluster.cpp:241: otu ==> out
data/mothur-1.44.3/source/opticluster.cpp:244: otu ==> out
data/mothur-1.44.3/source/opticluster.cpp:246: otu ==> out
data/mothur-1.44.3/source/optifitcluster.cpp:88: intial ==> initial
data/mothur-1.44.3/source/optifitcluster.cpp:113: OTU ==> OUT
data/mothur-1.44.3/source/optifitcluster.cpp:113: OTU ==> OUT
data/mothur-1.44.3/source/optifitcluster.cpp:113: OTU ==> OUT
data/mothur-1.44.3/source/optifitcluster.cpp:113: OTU ==> OUT
data/mothur-1.44.3/source/optifitcluster.cpp:114: OTU ==> OUT
data/mothur-1.44.3/source/optifitcluster.cpp:179: otu ==> out
data/mothur-1.44.3/source/optifitcluster.cpp:238: OTU ==> OUT
data/mothur-1.44.3/source/optifitcluster.cpp:391: otu ==> out
data/mothur-1.44.3/source/optifitcluster.cpp:393: otu ==> out
data/mothur-1.44.3/source/optifitcluster.cpp:394: otu ==> out
data/mothur-1.44.3/source/optifitcluster.cpp:426: otu ==> out
data/mothur-1.44.3/source/optifitcluster.cpp:437: OTU ==> OUT
data/mothur-1.44.3/source/optifitcluster.cpp:437: coorespond ==> correspond
data/mothur-1.44.3/source/optifitcluster.cpp:513: otu ==> out
data/mothur-1.44.3/source/rarefact.cpp:104: Lauch ==> Launch
data/mothur-1.44.3/source/rarefact.cpp:242: Lauch ==> Launch
data/mothur-1.44.3/source/sensspeccalc.cpp:52: otu ==> out
data/mothur-1.44.3/source/sensspeccalc.cpp:52: otu ==> out
data/mothur-1.44.3/source/sensspeccalc.cpp:52: otu ==> out
data/mothur-1.44.3/source/sensspeccalc.cpp:55: otu ==> out
data/mothur-1.44.3/source/sensspeccalc.cpp:57: otu ==> out
data/mothur-1.44.3/source/sensspeccalc.cpp:57: otu ==> out
data/mothur-1.44.3/source/seqnoise.cpp:150: accomodate ==> accommodate
data/mothur-1.44.3/source/seqnoise.cpp:170: otu ==> out
data/mothur-1.44.3/source/seqnoise.cpp:174: otu ==> out
data/mothur-1.44.3/source/seqnoise.cpp:175: otu ==> out
data/mothur-1.44.3/source/seqnoise.cpp:176: otu ==> out
data/mothur-1.44.3/source/seqnoise.cpp:228: otu ==> out
data/mothur-1.44.3/source/seqnoise.cpp:233: otu ==> out
data/mothur-1.44.3/source/seqnoise.cpp:234: otu ==> out
data/mothur-1.44.3/source/seqnoise.cpp:235: otu ==> out
data/mothur-1.44.3/source/seqnoise.cpp:531: otu ==> out
data/mothur-1.44.3/source/seqnoise.cpp:534: otu ==> out
data/mothur-1.44.3/source/seqnoise.cpp:534: otu ==> out
data/mothur-1.44.3/source/seqnoise.cpp:535: otu ==> out
data/mothur-1.44.3/source/seqnoise.cpp:535: otu ==> out
data/mothur-1.44.3/source/seqnoise.cpp:536: otu ==> out
data/mothur-1.44.3/source/summary.cpp:354: Lauch ==> Launch
data/mothur-1.44.3/source/summary.cpp:567: Lauch ==> Launch
data/mothur-1.44.3/source/summary.cpp:760: Lauch ==> Launch
data/mothur-1.44.3/source/summary.cpp:955: Lauch ==> Launch
data/mothur-1.44.3/source/utils.cpp:23: OTU ==> OUT
data/mothur-1.44.3/source/utils.cpp:622: excutable ==> executable
data/mothur-1.44.3/source/utils.cpp:630: excutable ==> executable
data/mothur-1.44.3/source/utils.cpp:690: excutable ==> executable
data/mothur-1.44.3/source/utils.cpp:697: excutable ==> executable
data/mothur-1.44.3/source/utils.cpp:2362: otu ==> out
data/mothur-1.44.3/source/utils.cpp:2365: otu ==> out
data/mothur-1.44.3/source/utils.cpp:2369: otu ==> out
data/mothur-1.44.3/source/utils.cpp:2394: otu ==> out
data/mothur-1.44.3/source/utils.cpp:2397: otu ==> out
data/mothur-1.44.3/source/utils.cpp:2401: otu ==> out
data/mothur-1.44.3/source/utils.cpp:2402: otu ==> out
data/mothur-1.44.3/source/utils.cpp:3885: OTU ==> OUT
data/mothur-1.44.3/source/utils.cpp:3912: OTU ==> OUT
data/mothur-1.44.3/source/utils.cpp:4822: peices ==> pieces
data/mothur-1.44.3/source/utils.cpp:4845: peices ==> pieces
data/mothur-1.44.3/source/utils.cpp:5013: Otu ==> Out
data/mothur-1.44.3/source/utils.cpp:5049: wih ==> with
data/mothur-1.44.3/source/utils.cpp:5125: wih ==> with
data/mothur-1.44.3/source/utils.cpp:5201: wih ==> with
data/mothur-1.44.3/source/utils.cpp:5277: wih ==> with
data/mothur-1.44.3/source/utils.cpp:5353: wih ==> with
data/mothur-1.44.3/source/utils.cpp:5429: wih ==> with
data/mothur-1.44.3/source/utils.cpp:5505: wih ==> with
data/mothur-1.44.3/source/utils.cpp:5581: wih ==> with
data/mothur-1.44.3/source/utils.cpp:5670: cant ==> can't
data/mothur-1.44.3/source/utils.cpp:6182: ingnore ==> ignore
data/mothur-1.44.3/source/utils.hpp:89: cant ==> can't
data/mothur-1.44.3/source/utils.hpp:279: positve ==> positive
data/mothur-1.44.3/source/validparameter.cpp:320: shoud ==> should
data/mothur-1.44.3/source/venn.cpp:605: otu ==> out
data/mothur-1.44.3/source/wilcox.cpp:70: ser ==> set
data/mothur-1.44.3/source/wilcox.cpp:77: ser ==> set
data/mothur-1.44.3/source/wilcox.cpp:79: ser ==> set
data/mothur-1.44.3/source/wilcox.cpp:81: ser ==> set
data/mothur-1.44.3/source/calculators/ace.cpp:23: Cace ==> Cache
data/mothur-1.44.3/source/calculators/ace.cpp:38: Cace ==> Cache
data/mothur-1.44.3/source/calculators/ace.cpp:39: Cace ==> Cache
data/mothur-1.44.3/source/calculators/ace.cpp:41: Cace ==> Cache
data/mothur-1.44.3/source/calculators/ace.cpp:47: Cace ==> Cache
data/mothur-1.44.3/source/calculators/ace.cpp:51: Cace ==> Cache
data/mothur-1.44.3/source/calculators/ace.cpp:54: Cace ==> Cache
data/mothur-1.44.3/source/calculators/ace.cpp:59: insted ==> instead
data/mothur-1.44.3/source/calculators/calculator.cpp:100: otu ==> out
data/mothur-1.44.3/source/calculators/calculator.cpp:102: otu ==> out
data/mothur-1.44.3/source/calculators/calculator.cpp:117: otu ==> out
data/mothur-1.44.3/source/calculators/calculator.cpp:119: otu ==> out
data/mothur-1.44.3/source/calculators/calculator.cpp:120: otu ==> out
data/mothur-1.44.3/source/calculators/calculator.cpp:124: otu ==> out
data/mothur-1.44.3/source/calculators/calculator.cpp:132: otu ==> out
data/mothur-1.44.3/source/calculators/calculator.cpp:149: otu ==> out
data/mothur-1.44.3/source/calculators/calculator.cpp:151: otu ==> out
data/mothur-1.44.3/source/calculators/calculator.cpp:166: otu ==> out
data/mothur-1.44.3/source/calculators/calculator.cpp:168: otu ==> out
data/mothur-1.44.3/source/calculators/calculator.cpp:169: otu ==> out
data/mothur-1.44.3/source/calculators/calculator.cpp:173: otu ==> out
data/mothur-1.44.3/source/calculators/calculator.cpp:181: otu ==> out
data/mothur-1.44.3/source/calculators/calculator.cpp:198: otu ==> out
data/mothur-1.44.3/source/calculators/calculator.cpp:200: otu ==> out
data/mothur-1.44.3/source/calculators/calculator.cpp:220: otu ==> out
data/mothur-1.44.3/source/calculators/calculator.cpp:222: otu ==> out
data/mothur-1.44.3/source/calculators/calculator.cpp:223: otu ==> out
data/mothur-1.44.3/source/calculators/calculator.cpp:227: otu ==> out
data/mothur-1.44.3/source/calculators/calculator.cpp:235: otu ==> out
data/mothur-1.44.3/source/calculators/calculator.cpp:252: otu ==> out
data/mothur-1.44.3/source/calculators/calculator.cpp:254: otu ==> out
data/mothur-1.44.3/source/calculators/calculator.cpp:274: otu ==> out
data/mothur-1.44.3/source/calculators/calculator.cpp:276: otu ==> out
data/mothur-1.44.3/source/calculators/calculator.cpp:277: otu ==> out
data/mothur-1.44.3/source/calculators/calculator.cpp:281: otu ==> out
data/mothur-1.44.3/source/calculators/calculator.cpp:289: otu ==> out
data/mothur-1.44.3/source/calculators/calculator.h:58: Positve ==> Positive
data/mothur-1.44.3/source/calculators/calculator.h:91: otu ==> out
data/mothur-1.44.3/source/calculators/calculator.h:91: otu ==> out
data/mothur-1.44.3/source/calculators/calculator.h:99: otu ==> out
data/mothur-1.44.3/source/calculators/calculator.h:100: otu ==> out
data/mothur-1.44.3/source/calculators/calculator.h:102: otu ==> out
data/mothur-1.44.3/source/calculators/calculator.h:103: otu ==> out
data/mothur-1.44.3/source/calculators/canberra.cpp:27: otu ==> out
data/mothur-1.44.3/source/calculators/eachgapdist.cpp:53: otu ==> out
data/mothur-1.44.3/source/calculators/eachgapdist.cpp:55: otu ==> out
data/mothur-1.44.3/source/calculators/eachgapdist.cpp:59: otu ==> out
data/mothur-1.44.3/source/calculators/eachgapdist.cpp:63: otu ==> out
data/mothur-1.44.3/source/calculators/eachgapdist.cpp:64: otu ==> out
data/mothur-1.44.3/source/calculators/eachgapdist.cpp:68: otu ==> out
data/mothur-1.44.3/source/calculators/eachgapdist.cpp:78: otu ==> out
data/mothur-1.44.3/source/calculators/eachgapdist.cpp:80: otu ==> out
data/mothur-1.44.3/source/calculators/eachgapdist.h:25: otu ==> out
data/mothur-1.44.3/source/calculators/eachgapignore.cpp:56: otu ==> out
data/mothur-1.44.3/source/calculators/eachgapignore.cpp:58: otu ==> out
data/mothur-1.44.3/source/calculators/eachgapignore.cpp:62: otu ==> out
data/mothur-1.44.3/source/calculators/eachgapignore.cpp:66: otu ==> out
data/mothur-1.44.3/source/calculators/eachgapignore.cpp:67: otu ==> out
data/mothur-1.44.3/source/calculators/eachgapignore.cpp:71: otu ==> out
data/mothur-1.44.3/source/calculators/eachgapignore.cpp:87: otu ==> out
data/mothur-1.44.3/source/calculators/eachgapignore.cpp:89: otu ==> out
data/mothur-1.44.3/source/calculators/eachgapignore.h:25: otu ==> out
data/mothur-1.44.3/source/calculators/gower.cpp:19: otu ==> out
data/mothur-1.44.3/source/calculators/ignoregaps.cpp:71: otu ==> out
data/mothur-1.44.3/source/calculators/ignoregaps.cpp:73: otu ==> out
data/mothur-1.44.3/source/calculators/ignoregaps.cpp:77: otu ==> out
data/mothur-1.44.3/source/calculators/ignoregaps.cpp:81: otu ==> out
data/mothur-1.44.3/source/calculators/ignoregaps.cpp:82: otu ==> out
data/mothur-1.44.3/source/calculators/ignoregaps.cpp:86: otu ==> out
data/mothur-1.44.3/source/calculators/ignoregaps.cpp:105: otu ==> out
data/mothur-1.44.3/source/calculators/ignoregaps.cpp:107: otu ==> out
data/mothur-1.44.3/source/calculators/ignoregaps.cpp:136: otu ==> out
data/mothur-1.44.3/source/calculators/ignoregaps.cpp:138: otu ==> out
data/mothur-1.44.3/source/calculators/ignoregaps.cpp:153: otu ==> out
data/mothur-1.44.3/source/calculators/ignoregaps.cpp:155: otu ==> out
data/mothur-1.44.3/source/calculators/ignoregaps.cpp:156: otu ==> out
data/mothur-1.44.3/source/calculators/ignoregaps.cpp:160: otu ==> out
data/mothur-1.44.3/source/calculators/ignoregaps.cpp:168: otu ==> out
data/mothur-1.44.3/source/calculators/ignoregaps.cpp:185: otu ==> out
data/mothur-1.44.3/source/calculators/ignoregaps.cpp:187: otu ==> out
data/mothur-1.44.3/source/calculators/ignoregaps.cpp:202: otu ==> out
data/mothur-1.44.3/source/calculators/ignoregaps.cpp:204: otu ==> out
data/mothur-1.44.3/source/calculators/ignoregaps.cpp:205: otu ==> out
data/mothur-1.44.3/source/calculators/ignoregaps.cpp:209: otu ==> out
data/mothur-1.44.3/source/calculators/ignoregaps.cpp:217: otu ==> out
data/mothur-1.44.3/source/calculators/ignoregaps.h:25: otu ==> out
data/mothur-1.44.3/source/calculators/ignoregaps.h:31: otu ==> out
data/mothur-1.44.3/source/calculators/ignoregaps.h:32: otu ==> out
data/mothur-1.44.3/source/calculators/memchi2.cpp:22: otu ==> out
data/mothur-1.44.3/source/calculators/memchord.cpp:20: otu ==> out
data/mothur-1.44.3/source/calculators/mempearson.cpp:21: otu ==> out
data/mothur-1.44.3/source/calculators/onegapdist.cpp:75: otu ==> out
data/mothur-1.44.3/source/calculators/onegapdist.cpp:77: otu ==> out
data/mothur-1.44.3/source/calculators/onegapdist.cpp:81: otu ==> out
data/mothur-1.44.3/source/calculators/onegapdist.cpp:85: otu ==> out
data/mothur-1.44.3/source/calculators/onegapdist.cpp:86: otu ==> out
data/mothur-1.44.3/source/calculators/onegapdist.cpp:90: otu ==> out
data/mothur-1.44.3/source/calculators/onegapdist.cpp:102: otu ==> out
data/mothur-1.44.3/source/calculators/onegapdist.cpp:104: otu ==> out
data/mothur-1.44.3/source/calculators/onegapdist.h:23: otu ==> out
data/mothur-1.44.3/source/calculators/onegapdist.h:25: otu ==> out
data/mothur-1.44.3/source/calculators/onegapignore.cpp:73: otu ==> out
data/mothur-1.44.3/source/calculators/onegapignore.cpp:75: otu ==> out
data/mothur-1.44.3/source/calculators/onegapignore.cpp:79: otu ==> out
data/mothur-1.44.3/source/calculators/onegapignore.cpp:83: otu ==> out
data/mothur-1.44.3/source/calculators/onegapignore.cpp:84: otu ==> out
data/mothur-1.44.3/source/calculators/onegapignore.cpp:88: otu ==> out
data/mothur-1.44.3/source/calculators/onegapignore.cpp:106: otu ==> out
data/mothur-1.44.3/source/calculators/onegapignore.cpp:108: otu ==> out
data/mothur-1.44.3/source/calculators/onegapignore.h:23: otu ==> out
data/mothur-1.44.3/source/calculators/onegapignore.h:25: otu ==> out
data/mothur-1.44.3/source/calculators/parsimony.cpp:84: theres ==> there's
data/mothur-1.44.3/source/calculators/parsimony.cpp:119: Lauch ==> Launch
data/mothur-1.44.3/source/calculators/parsimony.h:104: theres ==> there's
data/mothur-1.44.3/source/calculators/sharedbraycurtis.cpp:21: OTU ==> OUT
data/mothur-1.44.3/source/calculators/sharedchao1.cpp:23: coeffient ==> coefficient
data/mothur-1.44.3/source/calculators/sharedchao1.cpp:24: coeffient ==> coefficient
data/mothur-1.44.3/source/calculators/sharedchao1.cpp:27: coeffient ==> coefficient
data/mothur-1.44.3/source/calculators/sharedchao1.cpp:27: coeffient ==> coefficient
data/mothur-1.44.3/source/calculators/sharedchao1.cpp:137: coeffients ==> coefficients
data/mothur-1.44.3/source/calculators/structchi2.cpp:24: otu ==> out
data/mothur-1.44.3/source/calculators/unweighted.cpp:243: Lauch ==> Launch
data/mothur-1.44.3/source/calculators/unweighted.cpp:403: Lauch ==> Launch
data/mothur-1.44.3/source/calculators/uvest.cpp:24: OTU ==> OUT
data/mothur-1.44.3/source/calculators/weighted.cpp:369: Lauch ==> Launch
data/mothur-1.44.3/source/chimera/bellerophon.cpp:192: perference ==> preference
data/mothur-1.44.3/source/chimera/bellerophon.cpp:368: eachother ==> each other
data/mothur-1.44.3/source/chimera/bellerophon.h:20: seqeunce ==> sequence
data/mothur-1.44.3/source/chimera/ccode.cpp:225: querys ==> queries
data/mothur-1.44.3/source/chimera/ccode.cpp:230: querys ==> queries
data/mothur-1.44.3/source/chimera/ccode.cpp:361: slected ==> selected
data/mothur-1.44.3/source/chimera/ccode.cpp:471: initailize ==> initialize
data/mothur-1.44.3/source/chimera/ccode.cpp:506: adaquate ==> adequate
data/mothur-1.44.3/source/chimera/ccode.cpp:614: hte ==> the
data/mothur-1.44.3/source/chimera/ccode.cpp:618: querys ==> queries
data/mothur-1.44.3/source/chimera/ccode.h:66: eachother ==> each other
data/mothur-1.44.3/source/chimera/chimeracheckrdp.cpp:96: acurate ==> accurate
data/mothur-1.44.3/source/chimera/chimeracheckrdp.cpp:113: thats ==> that's
data/mothur-1.44.3/source/chimera/chimeracheckrdp.cpp:157: eachother ==> each other
data/mothur-1.44.3/source/chimera/chimeraslayer.cpp:384: tyes ==> types, ties
data/mothur-1.44.3/source/chimera/chimeraslayer.cpp:448: peice ==> piece
data/mothur-1.44.3/source/chimera/chimeraslayer.cpp:453: tyes ==> types, ties
data/mothur-1.44.3/source/chimera/chimeraslayer.cpp:616: similiar ==> similar
data/mothur-1.44.3/source/chimera/chimeraslayer.cpp:829: havent ==> haven't
data/mothur-1.44.3/source/chimera/chimeraslayer.cpp:836: havent ==> haven't
data/mothur-1.44.3/source/chimera/chimeraslayer.cpp:849: havent ==> haven't
data/mothur-1.44.3/source/chimera/chimeraslayer.cpp:860: havent ==> haven't
data/mothur-1.44.3/source/chimera/chimeraslayer.cpp:918: havent ==> haven't
data/mothur-1.44.3/source/chimera/chimeraslayer.cpp:925: havent ==> haven't
data/mothur-1.44.3/source/chimera/chimeraslayer.cpp:938: havent ==> haven't
data/mothur-1.44.3/source/chimera/chimeraslayer.cpp:949: havent ==> haven't
data/mothur-1.44.3/source/chimera/decalc.cpp:25: whereever ==> wherever
data/mothur-1.44.3/source/chimera/decalc.cpp:54: whereever ==> wherever
data/mothur-1.44.3/source/chimera/decalc.cpp:579: havent ==> haven't
data/mothur-1.44.3/source/chimera/decalc.cpp:587: havent ==> haven't
data/mothur-1.44.3/source/chimera/decalc.cpp:621: eachother ==> each other
data/mothur-1.44.3/source/chimera/decalc.cpp:656: eachother ==> each other
data/mothur-1.44.3/source/chimera/myPerseus.cpp:868: indexS ==> indexes, indices
data/mothur-1.44.3/source/chimera/myPerseus.cpp:875: indexS ==> indexes, indices
data/mothur-1.44.3/source/chimera/myPerseus.cpp:882: indexS ==> indexes, indices
data/mothur-1.44.3/source/chimera/myPerseus.cpp:886: indexS ==> indexes, indices
data/mothur-1.44.3/source/chimera/myPerseus.cpp:889: indexS ==> indexes, indices
data/mothur-1.44.3/source/chimera/myPerseus.cpp:893: indexS ==> indexes, indices
data/mothur-1.44.3/source/chimera/myPerseus.cpp:899: indexS ==> indexes, indices
data/mothur-1.44.3/source/chimera/myPerseus.cpp:910: indexS ==> indexes, indices
data/mothur-1.44.3/source/chimera/slayer.cpp:63: orignal ==> original
data/mothur-1.44.3/source/chimera/slayer.cpp:210: alot ==> a lot, allot
data/mothur-1.44.3/source/classifier/bayesian.cpp:85: initialze ==> initialize
data/mothur-1.44.3/source/classifier/bayesian.cpp:194: hte ==> the
data/mothur-1.44.3/source/classifier/bayesian.cpp:409: initialze ==> initialize
data/mothur-1.44.3/source/classifier/classify.cpp:98: FileTest ==> file test
data/mothur-1.44.3/source/classifier/classify.cpp:99: FileTest ==> file test
data/mothur-1.44.3/source/classifier/opticlassifier.cpp:113: initailize ==> initialize
data/mothur-1.44.3/source/classifier/opticlassifier.cpp:480: initialze ==> initialize
data/mothur-1.44.3/source/classifier/phylosummary.cpp:27: FileTest ==> file test
data/mothur-1.44.3/source/classifier/phylosummary.cpp:29: FileTest ==> file test
data/mothur-1.44.3/source/classifier/phylosummary.cpp:32: FileTest ==> file test
data/mothur-1.44.3/source/classifier/phylosummary.cpp:82: FileTest ==> file test
data/mothur-1.44.3/source/classifier/phylosummary.cpp:84: FileTest ==> file test
data/mothur-1.44.3/source/classifier/phylosummary.cpp:87: FileTest ==> file test
data/mothur-1.44.3/source/classifier/phylosummary.cpp:144: heirarchy ==> hierarchy
data/mothur-1.44.3/source/classifier/phylosummary.cpp:147: heirarchy ==> hierarchy
data/mothur-1.44.3/source/classifier/phylosummary.cpp:148: heirarchy ==> hierarchy
data/mothur-1.44.3/source/classifier/phylosummary.cpp:149: heirarchy ==> hierarchy
data/mothur-1.44.3/source/classifier/phylosummary.cpp:150: heirarchy ==> hierarchy
data/mothur-1.44.3/source/classifier/phylosummary.cpp:150: heirarchy ==> hierarchy
data/mothur-1.44.3/source/classifier/phylosummary.cpp:150: heirarchy ==> hierarchy
data/mothur-1.44.3/source/classifier/phylosummary.cpp:151: heirarchy ==> hierarchy
data/mothur-1.44.3/source/classifier/phylosummary.h:22: childs ==> children, child's
data/mothur-1.44.3/source/classifier/phylotree.cpp:124: heirarchy ==> hierarchy
data/mothur-1.44.3/source/classifier/phylotree.cpp:127: heirarchy ==> hierarchy
data/mothur-1.44.3/source/classifier/phylotree.cpp:128: heirarchy ==> hierarchy
data/mothur-1.44.3/source/classifier/phylotree.cpp:131: heirarchy ==> hierarchy
data/mothur-1.44.3/source/classifier/phylotree.cpp:132: heirarchy ==> hierarchy
data/mothur-1.44.3/source/classifier/phylotree.cpp:135: heirarchy ==> hierarchy
data/mothur-1.44.3/source/classifier/phylotree.cpp:136: heirarchy ==> hierarchy
data/mothur-1.44.3/source/classifier/phylotree.cpp:136: heirarchy ==> hierarchy
data/mothur-1.44.3/source/classifier/phylotree.cpp:136: heirarchy ==> hierarchy
data/mothur-1.44.3/source/classifier/phylotree.cpp:137: heirarchy ==> hierarchy
data/mothur-1.44.3/source/classifier/phylotree.h:22: childs ==> children, child's
data/mothur-1.44.3/source/clearcut/clearcut.cpp:269: horizonal ==> horizontal
data/mothur-1.44.3/source/clearcut/clearcut.cpp:349: tranformed ==> transformed
data/mothur-1.44.3/source/clearcut/clearcut.cpp:1279: horizonal ==> horizontal
data/mothur-1.44.3/source/clearcut/clearcut.cpp:1282: horizonal ==> horizontal
data/mothur-1.44.3/source/clearcut/cmdargs.cpp:520: tre ==> tree
data/mothur-1.44.3/source/clearcut/cmdargs.cpp:523: tre ==> tree
data/mothur-1.44.3/source/clearcut/distclearcut.cpp:371: arbitary ==> arbitrary
data/mothur-1.44.3/source/clearcut/fasta.cpp:281: explictly ==> explicitly
data/mothur-1.44.3/source/clearcut/fasta.cpp:329: explicity ==> explicitly
data/mothur-1.44.3/source/clearcut/fasta.cpp:374: intitial ==> initial
data/mothur-1.44.3/source/clearcut/fasta.cpp:722: unqiue ==> unique
data/mothur-1.44.3/source/clearcut/getopt_long.cpp:3: extention ==> extension
data/mothur-1.44.3/source/clearcut/getopt_long.cpp:137: extention ==> extension
data/mothur-1.44.3/source/clearcut/getopt_long.cpp:172: extention ==> extension
data/mothur-1.44.3/source/clearcut/getopt_long.cpp:181: extention ==> extension
data/mothur-1.44.3/source/clearcut/getopt_long.h:3: extention ==> extension
data/mothur-1.44.3/source/commands/aligncommand.cpp:358: incase ==> in case
data/mothur-1.44.3/source/commands/aligncommand.cpp:374: hte ==> the
data/mothur-1.44.3/source/commands/binsequencecommand.cpp:50: OTU ==> OUT
data/mothur-1.44.3/source/commands/binsequencecommand.h:12: OTU ==> OUT
data/mothur-1.44.3/source/commands/biominfocommand.cpp:19: otu ==> out
data/mothur-1.44.3/source/commands/biominfocommand.cpp:53: otu ==> out
data/mothur-1.44.3/source/commands/biominfocommand.cpp:53: otu ==> out
data/mothur-1.44.3/source/commands/biominfocommand.cpp:56: OTU ==> OUT
data/mothur-1.44.3/source/commands/biominfocommand.cpp:57: otu ==> out
data/mothur-1.44.3/source/commands/biominfocommand.cpp:75: interger ==> integer
data/mothur-1.44.3/source/commands/biominfocommand.cpp:75: interger ==> integer
data/mothur-1.44.3/source/commands/biominfocommand.cpp:142: otu ==> out
data/mothur-1.44.3/source/commands/biominfocommand.cpp:144: otu ==> out
data/mothur-1.44.3/source/commands/biominfocommand.cpp:144: otu ==> out
data/mothur-1.44.3/source/commands/biominfocommand.cpp:144: otu ==> out
data/mothur-1.44.3/source/commands/biominfocommand.cpp:428: otu ==> out
data/mothur-1.44.3/source/commands/biominfocommand.cpp:430: OTU ==> OUT
data/mothur-1.44.3/source/commands/biominfocommand.cpp:435: otu ==> out
data/mothur-1.44.3/source/commands/biominfocommand.cpp:486: OTU ==> OUT
data/mothur-1.44.3/source/commands/biominfocommand.cpp:511: OTU ==> OUT
data/mothur-1.44.3/source/commands/biominfocommand.cpp:514: otu ==> out
data/mothur-1.44.3/source/commands/biominfocommand.cpp:520: initialze ==> initialize
data/mothur-1.44.3/source/commands/biominfocommand.cpp:545: otu ==> out
data/mothur-1.44.3/source/commands/biominfocommand.cpp:545: otu ==> out
data/mothur-1.44.3/source/commands/biominfocommand.cpp:570: otu ==> out
data/mothur-1.44.3/source/commands/biominfocommand.cpp:612: OTU ==> OUT
data/mothur-1.44.3/source/commands/biominfocommand.cpp:680: OTU ==> OUT
data/mothur-1.44.3/source/commands/biominfocommand.cpp:680: OTU ==> OUT
data/mothur-1.44.3/source/commands/biominfocommand.cpp:726: OTU ==> OUT
data/mothur-1.44.3/source/commands/biominfocommand.cpp:837: OTU ==> OUT
data/mothur-1.44.3/source/commands/biominfocommand.cpp:850: otu ==> out
data/mothur-1.44.3/source/commands/biominfocommand.cpp:850: otu ==> out
data/mothur-1.44.3/source/commands/biominfocommand.cpp:875: otu ==> out
data/mothur-1.44.3/source/commands/biominfocommand.cpp:944: OTU ==> OUT
data/mothur-1.44.3/source/commands/biominfocommand.cpp:944: OTU ==> OUT
data/mothur-1.44.3/source/commands/biominfocommand.cpp:946: otu ==> out
data/mothur-1.44.3/source/commands/biominfocommand.cpp:947: OTU ==> OUT
data/mothur-1.44.3/source/commands/biominfocommand.cpp:953: OTU ==> OUT
data/mothur-1.44.3/source/commands/biominfocommand.cpp:1072: thats ==> that's
data/mothur-1.44.3/source/commands/biominfocommand.cpp:1200: OTU ==> OUT
data/mothur-1.44.3/source/commands/chimeraccodecommand.cpp:220: incase ==> in case
data/mothur-1.44.3/source/commands/chimeracheckcommand.cpp:185: incase ==> in case
data/mothur-1.44.3/source/commands/chimeraperseuscommand.cpp:59: seqeunce ==> sequence
data/mothur-1.44.3/source/commands/chimeraperseuscommand.cpp:739: Lauch ==> Launch
data/mothur-1.44.3/source/commands/chimerapintailcommand.cpp:144: FileTest ==> file test
data/mothur-1.44.3/source/commands/chimerapintailcommand.cpp:145: FileTest ==> file test
data/mothur-1.44.3/source/commands/chimerapintailcommand.cpp:146: FileTest ==> file test
data/mothur-1.44.3/source/commands/chimerapintailcommand.cpp:149: FileTest ==> file test
data/mothur-1.44.3/source/commands/chimerapintailcommand.cpp:252: incase ==> in case
data/mothur-1.44.3/source/commands/chimerapintailcommand.cpp:302: FileTest ==> file test
data/mothur-1.44.3/source/commands/chimerapintailcommand.cpp:303: FileTest ==> file test
data/mothur-1.44.3/source/commands/chimerapintailcommand.cpp:304: FileTest ==> file test
data/mothur-1.44.3/source/commands/chimerapintailcommand.cpp:307: FileTest ==> file test
data/mothur-1.44.3/source/commands/chimeraslayercommand.cpp:75: seqeunce ==> sequence
data/mothur-1.44.3/source/commands/chimeraslayercommand.cpp:807: incase ==> in case
data/mothur-1.44.3/source/commands/chimerauchimecommand.cpp:82: mininum ==> minimum
data/mothur-1.44.3/source/commands/chimerauchimecommand.cpp:91: sensivity ==> sensitivity, sensitively
data/mothur-1.44.3/source/commands/chimerauchimecommand.cpp:1308: Lauch ==> Launch
data/mothur-1.44.3/source/commands/chimeravsearchcommand.cpp:70: mininum ==> minimum
data/mothur-1.44.3/source/commands/chimeravsearchcommand.cpp:93: tThe ==> the
data/mothur-1.44.3/source/commands/chimeravsearchcommand.cpp:316: cant ==> can't
data/mothur-1.44.3/source/commands/chimeravsearchcommand.cpp:663: cant ==> can't
data/mothur-1.44.3/source/commands/chimeravsearchcommand.cpp:1151: Lauch ==> Launch
data/mothur-1.44.3/source/commands/chopseqscommand.cpp:64: ambigous ==> ambiguous
data/mothur-1.44.3/source/commands/chopseqscommand.cpp:577: Lauch ==> Launch
data/mothur-1.44.3/source/commands/classifyotucommand.cpp:28: otu ==> out
data/mothur-1.44.3/source/commands/classifyotucommand.cpp:55: otu ==> out
data/mothur-1.44.3/source/commands/classifyotucommand.cpp:59: otu ==> out
data/mothur-1.44.3/source/commands/classifyotucommand.cpp:59: otu ==> out
data/mothur-1.44.3/source/commands/classifyotucommand.cpp:60: otu ==> out
data/mothur-1.44.3/source/commands/classifyotucommand.cpp:62: otu ==> out
data/mothur-1.44.3/source/commands/classifyotucommand.cpp:70: otu ==> out
data/mothur-1.44.3/source/commands/classifyotucommand.cpp:72: concensus ==> consensus
data/mothur-1.44.3/source/commands/classifyotucommand.cpp:73: otu ==> out
data/mothur-1.44.3/source/commands/classifyotucommand.cpp:73: otu ==> out
data/mothur-1.44.3/source/commands/classifyotucommand.cpp:74: otu ==> out
data/mothur-1.44.3/source/commands/classifyotucommand.cpp:168: otu ==> out
data/mothur-1.44.3/source/commands/classifyotucommand.cpp:170: otu ==> out
data/mothur-1.44.3/source/commands/classifyotucommand.cpp:170: otu ==> out
data/mothur-1.44.3/source/commands/classifyotucommand.cpp:170: otu ==> out
data/mothur-1.44.3/source/commands/classifyotucommand.cpp:442: OTU ==> OUT
data/mothur-1.44.3/source/commands/classifyotucommand.cpp:459: OTU ==> OUT
data/mothur-1.44.3/source/commands/classifyotucommand.cpp:498: otu ==> out
data/mothur-1.44.3/source/commands/classifyotucommand.cpp:574: otu ==> out
data/mothur-1.44.3/source/commands/classifyotucommand.h:26: otu ==> out
data/mothur-1.44.3/source/commands/classifyotucommand.h:31: otu ==> out
data/mothur-1.44.3/source/commands/classifyotucommand.h:32: concensus ==> consensus
data/mothur-1.44.3/source/commands/classifyotucommand.h:32: OTU ==> OUT
data/mothur-1.44.3/source/commands/classifyseqscommand.cpp:602: Lauch ==> Launch
data/mothur-1.44.3/source/commands/classifysvmsharedcommand.cpp:363: OTU ==> OUT
data/mothur-1.44.3/source/commands/classifysvmsharedcommand.cpp:488: OTU ==> OUT
data/mothur-1.44.3/source/commands/classifytreecommand.cpp:47: concensus ==> consensus
data/mothur-1.44.3/source/commands/classifytreecommand.cpp:50: concensus ==> consensus
data/mothur-1.44.3/source/commands/classifytreecommand.cpp:54: tre ==> tree
data/mothur-1.44.3/source/commands/classifytreecommand.cpp:69: tre ==> tree
data/mothur-1.44.3/source/commands/classifytreecommand.cpp:187: concensus ==> consensus
data/mothur-1.44.3/source/commands/classifytreecommand.cpp:203: concensus ==> consensus
data/mothur-1.44.3/source/commands/classifytreecommand.cpp:215: concensus ==> consensus
data/mothur-1.44.3/source/commands/classifytreecommand.cpp:217: concensus ==> consensus
data/mothur-1.44.3/source/commands/classifytreecommand.cpp:255: classifed ==> classified
data/mothur-1.44.3/source/commands/clearcutcommand.cpp:102: tre ==> tree
data/mothur-1.44.3/source/commands/clustercommand.cpp:87: OTU ==> OUT
data/mothur-1.44.3/source/commands/clustercommand.cpp:87: otu ==> out
data/mothur-1.44.3/source/commands/clustercommand.cpp:259: legnth ==> length
data/mothur-1.44.3/source/commands/clustercommand.cpp:401: Opps ==> Oops
data/mothur-1.44.3/source/commands/clusterdoturcommand.cpp:119: legnth ==> length
data/mothur-1.44.3/source/commands/clusterfitcommand.cpp:82: precent ==> percent, prescient
data/mothur-1.44.3/source/commands/clusterfitcommand.cpp:96: OTU ==> OUT
data/mothur-1.44.3/source/commands/clusterfitcommand.cpp:96: OTU ==> OUT
data/mothur-1.44.3/source/commands/clusterfitcommand.cpp:96: OTU ==> OUT
data/mothur-1.44.3/source/commands/clusterfragmentscommand.cpp:278: didnt ==> didn't
data/mothur-1.44.3/source/commands/clustersplitcommand.cpp:104: OTU ==> OUT
data/mothur-1.44.3/source/commands/clustersplitcommand.cpp:104: otu ==> out
data/mothur-1.44.3/source/commands/clustersplitcommand.cpp:150: OTU ==> OUT
data/mothur-1.44.3/source/commands/clustersplitcommand.cpp:153: tThe ==> the
data/mothur-1.44.3/source/commands/clustersplitcommand.cpp:291: legnth ==> length
data/mothur-1.44.3/source/commands/clustersplitcommand.cpp:568: incase ==> in case
data/mothur-1.44.3/source/commands/clustersplitcommand.cpp:1215: Opps ==> Oops
data/mothur-1.44.3/source/commands/clustersplitcommand.cpp:1493: Lauch ==> Launch
data/mothur-1.44.3/source/commands/consensusseqscommand.cpp:48: otu ==> out
data/mothur-1.44.3/source/commands/consensusseqscommand.cpp:300: OTU ==> OUT
data/mothur-1.44.3/source/commands/consensusseqscommand.cpp:581: incase ==> in case
data/mothur-1.44.3/source/commands/consensusseqscommand.h:30: OTU ==> OUT
data/mothur-1.44.3/source/commands/cooccurrencecommand.cpp:215: inital ==> initial
data/mothur-1.44.3/source/commands/cooccurrencecommand.cpp:217: inital ==> initial
data/mothur-1.44.3/source/commands/cooccurrencecommand.cpp:370: begining ==> beginning
data/mothur-1.44.3/source/commands/corraxescommand.cpp:230: OTU ==> OUT
data/mothur-1.44.3/source/commands/corraxescommand.cpp:275: otu ==> out
data/mothur-1.44.3/source/commands/corraxescommand.cpp:281: otu ==> out
data/mothur-1.44.3/source/commands/corraxescommand.cpp:409: otu ==> out
data/mothur-1.44.3/source/commands/corraxescommand.cpp:415: otu ==> out
data/mothur-1.44.3/source/commands/corraxescommand.cpp:470: otu ==> out
data/mothur-1.44.3/source/commands/corraxescommand.cpp:565: otu ==> out
data/mothur-1.44.3/source/commands/corraxescommand.cpp:571: otu ==> out
data/mothur-1.44.3/source/commands/corraxescommand.cpp:607: otu ==> out
data/mothur-1.44.3/source/commands/corraxescommand.cpp:675: wih ==> with
data/mothur-1.44.3/source/commands/createdatabasecommand.cpp:51: otu ==> out
data/mothur-1.44.3/source/commands/createdatabasecommand.cpp:177: Otu ==> Out
data/mothur-1.44.3/source/commands/createdatabasecommand.cpp:178: Otu ==> Out
data/mothur-1.44.3/source/commands/createdatabasecommand.cpp:235: OTU ==> OUT
data/mothur-1.44.3/source/commands/createdatabasecommand.cpp:235: OTU ==> OUT
data/mothur-1.44.3/source/commands/createdatabasecommand.cpp:314: OTU ==> OUT
data/mothur-1.44.3/source/commands/createdatabasecommand.cpp:319: OTU ==> OUT
data/mothur-1.44.3/source/commands/createdatabasecommand.cpp:319: OTU ==> OUT
data/mothur-1.44.3/source/commands/createdatabasecommand.cpp:333: OTU ==> OUT
data/mothur-1.44.3/source/commands/createdatabasecommand.cpp:337: OTU ==> OUT
data/mothur-1.44.3/source/commands/createdatabasecommand.cpp:337: OTU ==> OUT
data/mothur-1.44.3/source/commands/createdatabasecommand.cpp:500: otu ==> out
data/mothur-1.44.3/source/commands/createdatabasecommand.cpp:503: otu ==> out
data/mothur-1.44.3/source/commands/createdatabasecommand.cpp:508: otu ==> out
data/mothur-1.44.3/source/commands/createdatabasecommand.cpp:539: OTU ==> OUT
data/mothur-1.44.3/source/commands/createdatabasecommand.cpp:550: OTU ==> OUT
data/mothur-1.44.3/source/commands/createdatabasecommand.cpp:579: wih ==> with
data/mothur-1.44.3/source/commands/createdatabasecommand.cpp:651: wih ==> with
data/mothur-1.44.3/source/commands/createdatabasecommand.cpp:719: wih ==> with
data/mothur-1.44.3/source/commands/createdatabasecommand.h:29: OTU ==> OUT
data/mothur-1.44.3/source/commands/degapseqscommand.cpp:242: Lauch ==> Launch
data/mothur-1.44.3/source/commands/deuniquetreecommand.cpp:55: tre ==> tree
data/mothur-1.44.3/source/commands/distancecommand.cpp:296: didnt ==> didn't
data/mothur-1.44.3/source/commands/distancecommand.cpp:638: Lauch ==> Launch
data/mothur-1.44.3/source/commands/distsharedcommand.cpp:503: Lauch ==> Launch
data/mothur-1.44.3/source/commands/distsharedcommand.h:62: similiarity ==> similarity
data/mothur-1.44.3/source/commands/diversityestimatorcommand.cpp:119: tRun ==> turn
data/mothur-1.44.3/source/commands/diversityestimatorcommand.cpp:704: untill ==> until
data/mothur-1.44.3/source/commands/filterseqscommand.cpp:374: Lauch ==> Launch
data/mothur-1.44.3/source/commands/filterseqscommand.cpp:548: Lauch ==> Launch
data/mothur-1.44.3/source/commands/filtersharedcommand.cpp:54: OTU ==> OUT
data/mothur-1.44.3/source/commands/filtersharedcommand.cpp:54: OTU ==> OUT
data/mothur-1.44.3/source/commands/filtersharedcommand.cpp:55: OTU ==> OUT
data/mothur-1.44.3/source/commands/filtersharedcommand.cpp:55: OTU ==> OUT
data/mothur-1.44.3/source/commands/filtersharedcommand.cpp:57: OTU ==> OUT
data/mothur-1.44.3/source/commands/filtersharedcommand.cpp:57: OTU ==> OUT
data/mothur-1.44.3/source/commands/filtersharedcommand.cpp:57: OTU ==> OUT
data/mothur-1.44.3/source/commands/filtersharedcommand.cpp:58: OTU ==> OUT
data/mothur-1.44.3/source/commands/filtersharedcommand.cpp:58: OTU ==> OUT
data/mothur-1.44.3/source/commands/filtersharedcommand.cpp:59: OTU ==> OUT
data/mothur-1.44.3/source/commands/filtersharedcommand.cpp:59: precent ==> percent, prescient
data/mothur-1.44.3/source/commands/filtersharedcommand.cpp:59: OTU ==> OUT
data/mothur-1.44.3/source/commands/filtersharedcommand.cpp:60: OTU ==> OUT
data/mothur-1.44.3/source/commands/filtersharedcommand.cpp:60: OTU ==> OUT
data/mothur-1.44.3/source/commands/filtersharedcommand.cpp:62: OTU ==> OUT
data/mothur-1.44.3/source/commands/filtersharedcommand.cpp:283: OTU ==> OUT
data/mothur-1.44.3/source/commands/filtersharedcommand.cpp:352: OTU ==> OUT
data/mothur-1.44.3/source/commands/filtersharedcommand.cpp:361: OTU ==> OUT
data/mothur-1.44.3/source/commands/filtersharedcommand.cpp:370: OTU ==> OUT
data/mothur-1.44.3/source/commands/getcoremicrobiomecommand.cpp:49: OTU ==> OUT
data/mothur-1.44.3/source/commands/getcoremicrobiomecommand.cpp:50: OTU ==> OUT
data/mothur-1.44.3/source/commands/getcoremicrobiomecommand.cpp:51: OTU ==> OUT
data/mothur-1.44.3/source/commands/getcoremicrobiomecommand.cpp:51: interger ==> integer
data/mothur-1.44.3/source/commands/getcoremicrobiomecommand.cpp:264: otu ==> out
data/mothur-1.44.3/source/commands/getcoremicrobiomecommand.h:27: commmand ==> command
data/mothur-1.44.3/source/commands/getgroupscommand.cpp:64: specfic ==> specific
data/mothur-1.44.3/source/commands/getlineagecommand.cpp:66: cofidence ==> confidence
data/mothur-1.44.3/source/commands/getlistcountcommand.cpp:15: otu ==> out
data/mothur-1.44.3/source/commands/getlistcountcommand.cpp:17: otu ==> out
data/mothur-1.44.3/source/commands/getlistcountcommand.cpp:25: otu ==> out
data/mothur-1.44.3/source/commands/getlistcountcommand.cpp:42: otu ==> out
data/mothur-1.44.3/source/commands/getlistcountcommand.cpp:43: otu ==> out
data/mothur-1.44.3/source/commands/getlistcountcommand.cpp:43: otu ==> out
data/mothur-1.44.3/source/commands/getlistcountcommand.cpp:43: otu ==> out
data/mothur-1.44.3/source/commands/getlistcountcommand.cpp:44: otu ==> out
data/mothur-1.44.3/source/commands/getlistcountcommand.cpp:48: otu ==> out
data/mothur-1.44.3/source/commands/getlistcountcommand.cpp:62: otu ==> out
data/mothur-1.44.3/source/commands/getlistcountcommand.cpp:62: otu ==> out
data/mothur-1.44.3/source/commands/getlistcountcommand.cpp:100: otu ==> out
data/mothur-1.44.3/source/commands/getlistcountcommand.cpp:101: otu ==> out
data/mothur-1.44.3/source/commands/getlistcountcommand.cpp:101: otu ==> out
data/mothur-1.44.3/source/commands/getlistcountcommand.cpp:101: otu ==> out
data/mothur-1.44.3/source/commands/getlistcountcommand.cpp:101: otu ==> out
data/mothur-1.44.3/source/commands/getlistcountcommand.cpp:160: otu ==> out
data/mothur-1.44.3/source/commands/getlistcountcommand.cpp:163: otu ==> out
data/mothur-1.44.3/source/commands/getlistcountcommand.cpp:174: otu ==> out
data/mothur-1.44.3/source/commands/getlistcountcommand.h:28: OTU ==> OUT
data/mothur-1.44.3/source/commands/getlistcountcommand.h:28: OTU ==> OUT
data/mothur-1.44.3/source/commands/getmetacommunitycommand.cpp:610: OTU ==> OUT
data/mothur-1.44.3/source/commands/getmetacommunitycommand.cpp:821: similiarity ==> similarity
data/mothur-1.44.3/source/commands/getmimarkspackagecommand.cpp:16: dependancies ==> dependencies
data/mothur-1.44.3/source/commands/getmimarkspackagecommand.cpp:195: respectivly ==> respectively
data/mothur-1.44.3/source/commands/getmimarkspackagecommand.cpp:257: respectivly ==> respectively
data/mothur-1.44.3/source/commands/getmimarkspackagecommand.cpp:261: respectivly ==> respectively
data/mothur-1.44.3/source/commands/getmimarkspackagecommand.cpp:272: respectivly ==> respectively
data/mothur-1.44.3/source/commands/getmimarkspackagecommand.cpp:283: respectivly ==> respectively
data/mothur-1.44.3/source/commands/getmimarkspackagecommand.cpp:290: respectivly ==> respectively
data/mothur-1.44.3/source/commands/getmimarkspackagecommand.cpp:294: respectivly ==> respectively
data/mothur-1.44.3/source/commands/getmimarkspackagecommand.cpp:301: respectivly ==> respectively
data/mothur-1.44.3/source/commands/getmimarkspackagecommand.cpp:305: respectivly ==> respectively
data/mothur-1.44.3/source/commands/getmimarkspackagecommand.cpp:316: respectivly ==> respectively
data/mothur-1.44.3/source/commands/getmimarkspackagecommand.cpp:323: respectivly ==> respectively
data/mothur-1.44.3/source/commands/getmimarkspackagecommand.cpp:327: respectivly ==> respectively
data/mothur-1.44.3/source/commands/getoturepcommand.cpp:77: OTU ==> OUT
data/mothur-1.44.3/source/commands/getoturepcommand.cpp:79: OTU ==> OUT
data/mothur-1.44.3/source/commands/getoturepcommand.cpp:79: OTU ==> OUT
data/mothur-1.44.3/source/commands/getoturepcommand.cpp:86: OTU ==> OUT
data/mothur-1.44.3/source/commands/getoturepcommand.cpp:86: seqeunce ==> sequence
data/mothur-1.44.3/source/commands/getoturepcommand.cpp:91: OTU ==> OUT
data/mothur-1.44.3/source/commands/getoturepcommand.cpp:92: OTU ==> OUT
data/mothur-1.44.3/source/commands/getoturepcommand.cpp:566: OTU ==> OUT
data/mothur-1.44.3/source/commands/getoturepcommand.cpp:570: OTU ==> OUT
data/mothur-1.44.3/source/commands/getoturepcommand.cpp:581: otu ==> out
data/mothur-1.44.3/source/commands/getoturepcommand.cpp:611: Positve ==> Positive
data/mothur-1.44.3/source/commands/getoturepcommand.cpp:620: otu ==> out
data/mothur-1.44.3/source/commands/getoturepcommand.cpp:734: otu ==> out
data/mothur-1.44.3/source/commands/getoturepcommand.cpp:766: otu ==> out
data/mothur-1.44.3/source/commands/getoturepcommand.cpp:768: otu ==> out
data/mothur-1.44.3/source/commands/getoturepcommand.cpp:779: otu ==> out
data/mothur-1.44.3/source/commands/getoturepcommand.cpp:952: otu ==> out
data/mothur-1.44.3/source/commands/getoturepcommand.cpp:1022: otu ==> out
data/mothur-1.44.3/source/commands/getoturepcommand.h:12: OTU ==> OUT
data/mothur-1.44.3/source/commands/getoturepcommand.h:55: OTU ==> OUT
data/mothur-1.44.3/source/commands/getotuscommand.cpp:47: otu ==> out
data/mothur-1.44.3/source/commands/getotuscommand.cpp:47: otu ==> out
data/mothur-1.44.3/source/commands/getotuscommand.cpp:49: otu ==> out
data/mothur-1.44.3/source/commands/getotuscommand.cpp:50: otu ==> out
data/mothur-1.44.3/source/commands/getotuscommand.cpp:53: commmand ==> command
data/mothur-1.44.3/source/commands/getotuscommand.cpp:221: otu ==> out
data/mothur-1.44.3/source/commands/getotuscommand.cpp:224: otu ==> out
data/mothur-1.44.3/source/commands/getotuscommand.cpp:227: Otu ==> Out
data/mothur-1.44.3/source/commands/getotuscommand.cpp:227: otu ==> out
data/mothur-1.44.3/source/commands/getotuscommand.cpp:229: otu ==> out
data/mothur-1.44.3/source/commands/getotuscommand.cpp:233: otu ==> out
data/mothur-1.44.3/source/commands/getotuscommand.cpp:297: otu ==> out
data/mothur-1.44.3/source/commands/getotuscommand.cpp:335: otu ==> out
data/mothur-1.44.3/source/commands/getotuscommand.cpp:336: otu ==> out
data/mothur-1.44.3/source/commands/getotuscommand.cpp:339: otu ==> out
data/mothur-1.44.3/source/commands/getotuscommand.cpp:343: otu ==> out
data/mothur-1.44.3/source/commands/getotuscommand.cpp:379: otu ==> out
data/mothur-1.44.3/source/commands/getotuscommand.cpp:482: wih ==> with
data/mothur-1.44.3/source/commands/getotuscommand.cpp:552: wih ==> with
data/mothur-1.44.3/source/commands/getotuscommand.h:32: otu ==> out
data/mothur-1.44.3/source/commands/getotuscommand.h:32: otu ==> out
data/mothur-1.44.3/source/commands/getrelabundcommand.cpp:204: otu ==> out
data/mothur-1.44.3/source/commands/getrelabundcommand.cpp:210: otu ==> out
data/mothur-1.44.3/source/commands/getrelabundcommand.h:29: OTU ==> OUT
data/mothur-1.44.3/source/commands/getsharedotucommand.cpp:355: hte ==> the
data/mothur-1.44.3/source/commands/getsharedotucommand.cpp:361: hte ==> the
data/mothur-1.44.3/source/commands/heatmapcommand.h:34: OTU ==> OUT
data/mothur-1.44.3/source/commands/heatmapsimcommand.cpp:69: bewteen ==> between
data/mothur-1.44.3/source/commands/helpcommand.cpp:179: tYes ==> types, ties
data/mothur-1.44.3/source/commands/helpcommand.cpp:182: tYes ==> types, ties
data/mothur-1.44.3/source/commands/helpcommand.cpp:188: tYes ==> types, ties
data/mothur-1.44.3/source/commands/helpcommand.cpp:202: tThe ==> the
data/mothur-1.44.3/source/commands/helpcommand.cpp:208: tThe ==> the
data/mothur-1.44.3/source/commands/helpcommand.cpp:218: tThe ==> the
data/mothur-1.44.3/source/commands/helpcommand.cpp:218: tThe ==> the
data/mothur-1.44.3/source/commands/helpcommand.cpp:220: OTU ==> OUT
data/mothur-1.44.3/source/commands/helpcommand.cpp:305: otu ==> out
data/mothur-1.44.3/source/commands/helpcommand.cpp:314: otu ==> out
data/mothur-1.44.3/source/commands/helpcommand.cpp:357: otu ==> out
data/mothur-1.44.3/source/commands/indicatorcommand.cpp:49: tre ==> tree
data/mothur-1.44.3/source/commands/indicatorcommand.cpp:51: OTU ==> OUT
data/mothur-1.44.3/source/commands/indicatorcommand.cpp:58: tre ==> tree
data/mothur-1.44.3/source/commands/indicatorcommand.cpp:72: tre ==> tree
data/mothur-1.44.3/source/commands/indicatorcommand.cpp:241: ouptut ==> output
data/mothur-1.44.3/source/commands/indicatorcommand.cpp:299: otu ==> out
data/mothur-1.44.3/source/commands/indicatorcommand.cpp:317: didnt ==> didn't
data/mothur-1.44.3/source/commands/indicatorcommand.cpp:382: otu ==> out
data/mothur-1.44.3/source/commands/indicatorcommand.cpp:396: didnt ==> didn't
data/mothur-1.44.3/source/commands/indicatorcommand.cpp:440: otu ==> out
data/mothur-1.44.3/source/commands/indicatorcommand.cpp:577: OTU ==> OUT
data/mothur-1.44.3/source/commands/indicatorcommand.cpp:606: otu ==> out
data/mothur-1.44.3/source/commands/indicatorcommand.cpp:607: otu ==> out
data/mothur-1.44.3/source/commands/indicatorcommand.cpp:608: otu ==> out
data/mothur-1.44.3/source/commands/indicatorcommand.cpp:944: Lauch ==> Launch
data/mothur-1.44.3/source/commands/indicatorcommand.cpp:1031: Lauch ==> Launch
data/mothur-1.44.3/source/commands/indicatorcommand.h:56: OTU ==> OUT
data/mothur-1.44.3/source/commands/lefsecommand.cpp:327: otu ==> out
data/mothur-1.44.3/source/commands/lefsecommand.cpp:342: nNumber ==> number
data/mothur-1.44.3/source/commands/lefsecommand.cpp:460: neccessarily ==> necessarily
data/mothur-1.44.3/source/commands/lefsecommand.cpp:506: comparision ==> comparison
data/mothur-1.44.3/source/commands/lefsecommand.cpp:864: otu ==> out
data/mothur-1.44.3/source/commands/lefsecommand.cpp:895: otu ==> out
data/mothur-1.44.3/source/commands/lefsecommand.cpp:939: otu ==> out
data/mothur-1.44.3/source/commands/lefsecommand.cpp:948: OTU ==> OUT
data/mothur-1.44.3/source/commands/lefsecommand.cpp:976: OTU ==> OUT
data/mothur-1.44.3/source/commands/lefsecommand.cpp:1016: otu ==> out
data/mothur-1.44.3/source/commands/libshuffcommand.cpp:186: editted ==> edited
data/mothur-1.44.3/source/commands/libshuffcommand.cpp:252: neccessary ==> necessary
data/mothur-1.44.3/source/commands/libshuffcommand.cpp:316: neccessary ==> necessary
data/mothur-1.44.3/source/commands/libshuffcommand.cpp:410: neccessary ==> necessary
data/mothur-1.44.3/source/commands/libshuffcommand.h:31: Larget ==> Larger, largest, target
data/mothur-1.44.3/source/commands/listotuscommand.cpp:43: otu ==> out
data/mothur-1.44.3/source/commands/listotuscommand.cpp:43: otu ==> out
data/mothur-1.44.3/source/commands/listotuscommand.cpp:43: otu ==> out
data/mothur-1.44.3/source/commands/listotuscommand.cpp:47: commmand ==> command
data/mothur-1.44.3/source/commands/listotuscommand.h:28: commmand ==> command
data/mothur-1.44.3/source/commands/listotuscommand.h:33: otu ==> out
data/mothur-1.44.3/source/commands/listotuscommand.h:33: otu ==> out
data/mothur-1.44.3/source/commands/listotuscommand.h:33: otu ==> out
data/mothur-1.44.3/source/commands/listseqscommand.cpp:214: Otu ==> Out
data/mothur-1.44.3/source/commands/makebiomcommand.cpp:21: OTU ==> OUT
data/mothur-1.44.3/source/commands/makebiomcommand.cpp:65: OTU ==> OUT
data/mothur-1.44.3/source/commands/makebiomcommand.cpp:134: otu ==> out
data/mothur-1.44.3/source/commands/makebiomcommand.cpp:136: OTU ==> OUT
data/mothur-1.44.3/source/commands/makebiomcommand.cpp:137: OTU ==> OUT
data/mothur-1.44.3/source/commands/makebiomcommand.cpp:349: OTU ==> OUT
data/mothur-1.44.3/source/commands/makebiomcommand.cpp:490: OTU ==> OUT
data/mothur-1.44.3/source/commands/makebiomcommand.cpp:644: Otu ==> Out
data/mothur-1.44.3/source/commands/makebiomcommand.cpp:645: Otu ==> Out
data/mothur-1.44.3/source/commands/makebiomcommand.cpp:682: overwritting ==> overwriting
data/mothur-1.44.3/source/commands/makebiomcommand.cpp:767: Otu ==> Out
data/mothur-1.44.3/source/commands/makebiomcommand.cpp:768: Otu ==> Out
data/mothur-1.44.3/source/commands/makebiomcommand.cpp:793: overwritting ==> overwriting
data/mothur-1.44.3/source/commands/makebiomcommand.cpp:849: otu ==> out
data/mothur-1.44.3/source/commands/makebiomcommand.cpp:850: OTU ==> OUT
data/mothur-1.44.3/source/commands/makebiomcommand.cpp:855: otu ==> out
data/mothur-1.44.3/source/commands/makebiomcommand.cpp:878: otu ==> out
data/mothur-1.44.3/source/commands/makebiomcommand.cpp:890: otu ==> out
data/mothur-1.44.3/source/commands/makebiomcommand.cpp:894: OTU ==> OUT
data/mothur-1.44.3/source/commands/makebiomcommand.cpp:896: OTU ==> OUT
data/mothur-1.44.3/source/commands/makebiomcommand.cpp:922: otu ==> out
data/mothur-1.44.3/source/commands/makebiomcommand.cpp:923: otu ==> out
data/mothur-1.44.3/source/commands/makebiomcommand.cpp:928: OTU ==> OUT
data/mothur-1.44.3/source/commands/makebiomcommand.cpp:928: OTU ==> OUT
data/mothur-1.44.3/source/commands/makebiomcommand.cpp:928: OTU ==> OUT
data/mothur-1.44.3/source/commands/makebiomcommand.cpp:960: otu ==> out
data/mothur-1.44.3/source/commands/makebiomcommand.cpp:971: otu ==> out
data/mothur-1.44.3/source/commands/makebiomcommand.cpp:972: otu ==> out
data/mothur-1.44.3/source/commands/makebiomcommand.cpp:975: otu ==> out
data/mothur-1.44.3/source/commands/makebiomcommand.cpp:1006: otu ==> out
data/mothur-1.44.3/source/commands/makebiomcommand.cpp:1007: OTU ==> OUT
data/mothur-1.44.3/source/commands/makebiomcommand.cpp:1012: otu ==> out
data/mothur-1.44.3/source/commands/makebiomcommand.cpp:1036: otu ==> out
data/mothur-1.44.3/source/commands/makebiomcommand.cpp:1048: otu ==> out
data/mothur-1.44.3/source/commands/makebiomcommand.cpp:1052: OTU ==> OUT
data/mothur-1.44.3/source/commands/makebiomcommand.cpp:1054: OTU ==> OUT
data/mothur-1.44.3/source/commands/makebiomcommand.cpp:1081: otu ==> out
data/mothur-1.44.3/source/commands/makebiomcommand.cpp:1082: otu ==> out
data/mothur-1.44.3/source/commands/makebiomcommand.cpp:1087: OTU ==> OUT
data/mothur-1.44.3/source/commands/makebiomcommand.cpp:1115: otu ==> out
data/mothur-1.44.3/source/commands/makebiomcommand.cpp:1131: otu ==> out
data/mothur-1.44.3/source/commands/makebiomcommand.cpp:1132: otu ==> out
data/mothur-1.44.3/source/commands/makebiomcommand.cpp:1135: otu ==> out
data/mothur-1.44.3/source/commands/makebiomcommand.cpp:1138: otu ==> out
data/mothur-1.44.3/source/commands/makecontigscommand.cpp:365: independantly ==> independently
data/mothur-1.44.3/source/commands/makecontigscommand.cpp:1353: cant ==> can't
data/mothur-1.44.3/source/commands/makecontigscommand.cpp:1764: neccessary ==> necessary
data/mothur-1.44.3/source/commands/makecontigscommand.cpp:1971: Lauch ==> Launch
data/mothur-1.44.3/source/commands/makecontigscommand.cpp:2175: Lauch ==> Launch
data/mothur-1.44.3/source/commands/makecontigscommand.cpp:2372: seach ==> search
data/mothur-1.44.3/source/commands/makecontigscommand.cpp:2666: independantly ==> independently
data/mothur-1.44.3/source/commands/makecontigscommand.h:51: commmand ==> command
data/mothur-1.44.3/source/commands/makecontigscommand.h:86: hte ==> the
data/mothur-1.44.3/source/commands/makefilecommand.cpp:137: togther ==> together
data/mothur-1.44.3/source/commands/makelefsecommand.cpp:49: otu ==> out
data/mothur-1.44.3/source/commands/makelefsecommand.cpp:223: otu ==> out
data/mothur-1.44.3/source/commands/makelefsecommand.cpp:251: otu ==> out
data/mothur-1.44.3/source/commands/makelefsecommand.cpp:280: wih ==> with
data/mothur-1.44.3/source/commands/makelefsecommand.cpp:356: otu ==> out
data/mothur-1.44.3/source/commands/makelefsecommand.cpp:363: otu ==> out
data/mothur-1.44.3/source/commands/makelefsecommand.cpp:403: wih ==> with
data/mothur-1.44.3/source/commands/makelookupcommand.cpp:277: guassian ==> gaussian
data/mothur-1.44.3/source/commands/makesharedcommand.cpp:269: OTU ==> OUT
data/mothur-1.44.3/source/commands/makesharedcommand.cpp:358: OTU ==> OUT
data/mothur-1.44.3/source/commands/makesharedcommand.cpp:361: otu ==> out
data/mothur-1.44.3/source/commands/makesharedcommand.cpp:393: otu ==> out
data/mothur-1.44.3/source/commands/makesharedcommand.cpp:416: OTU ==> OUT
data/mothur-1.44.3/source/commands/makesharedcommand.cpp:497: OTU ==> OUT
data/mothur-1.44.3/source/commands/makesharedcommand.cpp:564: OTU ==> OUT
data/mothur-1.44.3/source/commands/makesharedcommand.cpp:564: OTU ==> OUT
data/mothur-1.44.3/source/commands/makesharedcommand.cpp:606: OTU ==> OUT
data/mothur-1.44.3/source/commands/makesharedcommand.cpp:720: OTU ==> OUT
data/mothur-1.44.3/source/commands/makesharedcommand.cpp:720: OTU ==> OUT
data/mothur-1.44.3/source/commands/makesharedcommand.cpp:722: otu ==> out
data/mothur-1.44.3/source/commands/makesharedcommand.cpp:723: OTU ==> OUT
data/mothur-1.44.3/source/commands/makesharedcommand.cpp:729: OTU ==> OUT
data/mothur-1.44.3/source/commands/makesharedcommand.cpp:862: OTU ==> OUT
data/mothur-1.44.3/source/commands/makesharedcommand.h:18: otu ==> out
data/mothur-1.44.3/source/commands/makesharedcommand.h:22: otu ==> out
data/mothur-1.44.3/source/commands/makesharedcommand.h:23: otu ==> out
data/mothur-1.44.3/source/commands/makesharedcommand.h:31: OTU ==> OUT
data/mothur-1.44.3/source/commands/mantelcommand.cpp:43: edn ==> end
data/mothur-1.44.3/source/commands/mergegroupscommand.cpp:270: OTU ==> OUT
data/mothur-1.44.3/source/commands/mergeotuscommand.cpp:314: OTU ==> OUT
data/mothur-1.44.3/source/commands/mergeotuscommand.cpp:324: otu ==> out
data/mothur-1.44.3/source/commands/mergeotuscommand.cpp:329: otu ==> out
data/mothur-1.44.3/source/commands/mergeotuscommand.cpp:331: otu ==> out
data/mothur-1.44.3/source/commands/mergeotuscommand.cpp:432: OTU ==> OUT
data/mothur-1.44.3/source/commands/mergeotuscommand.cpp:440: otu ==> out
data/mothur-1.44.3/source/commands/mergeotuscommand.cpp:446: otu ==> out
data/mothur-1.44.3/source/commands/mergeotuscommand.cpp:449: otu ==> out
data/mothur-1.44.3/source/commands/mergeotuscommand.cpp:457: otu ==> out
data/mothur-1.44.3/source/commands/mergeotuscommand.cpp:559: OTU ==> OUT
data/mothur-1.44.3/source/commands/mergeotuscommand.cpp:569: otu ==> out
data/mothur-1.44.3/source/commands/mergeotuscommand.cpp:574: otu ==> out
data/mothur-1.44.3/source/commands/mergeotuscommand.cpp:576: otu ==> out
data/mothur-1.44.3/source/commands/mergesfffilecommand.cpp:306: seqeunce ==> sequence
data/mothur-1.44.3/source/commands/metastatscommand.cpp:13: atLeast ==> at least
data/mothur-1.44.3/source/commands/metastatscommand.cpp:13: atLeast ==> at least
data/mothur-1.44.3/source/commands/metastatscommand.cpp:376: Lauch ==> Launch
data/mothur-1.44.3/source/commands/metastatscommand.cpp:497: Lauch ==> Launch
data/mothur-1.44.3/source/commands/mgclustercommand.cpp:66: OTU ==> OUT
data/mothur-1.44.3/source/commands/mgclustercommand.cpp:66: otu ==> out
data/mothur-1.44.3/source/commands/mimarksattributescommand.cpp:403: ba ==> by, be
data/mothur-1.44.3/source/commands/newcommandtemplate.cpp:19: dependancies ==> dependencies
data/mothur-1.44.3/source/commands/newcommandtemplate.cpp:23: dependancies ==> dependencies
data/mothur-1.44.3/source/commands/newcommandtemplate.cpp:108: paramters ==> parameters
data/mothur-1.44.3/source/commands/newcommandtemplate.cpp:189: Mutliple ==> Multiple
data/mothur-1.44.3/source/commands/newcommandtemplate.cpp:229: ot ==> to, of, or
data/mothur-1.44.3/source/commands/newcommandtemplate.h:39: commmand ==> command
data/mothur-1.44.3/source/commands/nmdscommand.cpp:229: nNumber ==> number
data/mothur-1.44.3/source/commands/otuassociationcommand.cpp:45: otu ==> out
data/mothur-1.44.3/source/commands/otuassociationcommand.cpp:46: te ==> the, be, we
data/mothur-1.44.3/source/commands/otuassociationcommand.cpp:46: bewteen ==> between
data/mothur-1.44.3/source/commands/otuassociationcommand.cpp:47: otu ==> out
data/mothur-1.44.3/source/commands/otuassociationcommand.cpp:50: otu ==> out
data/mothur-1.44.3/source/commands/otuassociationcommand.cpp:52: otu ==> out
data/mothur-1.44.3/source/commands/otuassociationcommand.cpp:52: otu ==> out
data/mothur-1.44.3/source/commands/otuassociationcommand.cpp:53: otu ==> out
data/mothur-1.44.3/source/commands/otuassociationcommand.cpp:54: otu ==> out
data/mothur-1.44.3/source/commands/otuassociationcommand.cpp:54: otu ==> out
data/mothur-1.44.3/source/commands/otuassociationcommand.cpp:68: otu ==> out
data/mothur-1.44.3/source/commands/otuassociationcommand.h:24: otu ==> out
data/mothur-1.44.3/source/commands/otuassociationcommand.h:29: Otu ==> Out
data/mothur-1.44.3/source/commands/otuhierarchycommand.cpp:41: otu ==> out
data/mothur-1.44.3/source/commands/otuhierarchycommand.cpp:42: otu ==> out
data/mothur-1.44.3/source/commands/otuhierarchycommand.cpp:43: OTU ==> OUT
data/mothur-1.44.3/source/commands/otuhierarchycommand.cpp:44: otu ==> out
data/mothur-1.44.3/source/commands/otuhierarchycommand.cpp:45: otu ==> out
data/mothur-1.44.3/source/commands/otuhierarchycommand.cpp:46: otu ==> out
data/mothur-1.44.3/source/commands/otuhierarchycommand.cpp:47: otu ==> out
data/mothur-1.44.3/source/commands/otuhierarchycommand.cpp:47: otu ==> out
data/mothur-1.44.3/source/commands/otuhierarchycommand.cpp:61: otu ==> out
data/mothur-1.44.3/source/commands/otuhierarchycommand.cpp:99: otu ==> out
data/mothur-1.44.3/source/commands/otuhierarchycommand.cpp:146: otu ==> out
data/mothur-1.44.3/source/commands/otuhierarchycommand.cpp:166: otu ==> out
data/mothur-1.44.3/source/commands/otuhierarchycommand.cpp:166: otu ==> out
data/mothur-1.44.3/source/commands/otuhierarchycommand.cpp:251: wih ==> with
data/mothur-1.44.3/source/commands/otuhierarchycommand.h:24: otu ==> out
data/mothur-1.44.3/source/commands/otuhierarchycommand.h:29: Otu ==> Out
data/mothur-1.44.3/source/commands/pairwiseseqscommand.cpp:252: didnt ==> didn't
data/mothur-1.44.3/source/commands/pairwiseseqscommand.cpp:707: Lauch ==> Launch
data/mothur-1.44.3/source/commands/pcacommand.cpp:169: wih ==> with
data/mothur-1.44.3/source/commands/pcrseqscommand.cpp:184: didnt ==> didn't
data/mothur-1.44.3/source/commands/pcrseqscommand.cpp:754: Lauch ==> Launch
data/mothur-1.44.3/source/commands/phylodiversitycommand.cpp:56: preform ==> perform
data/mothur-1.44.3/source/commands/phylodiversitycommand.cpp:278: incase ==> in case
data/mothur-1.44.3/source/commands/phylodiversitycommand.cpp:630: Lauch ==> Launch
data/mothur-1.44.3/source/commands/phylodiversitycommand.h:29: Lond ==> Long
data/mothur-1.44.3/source/commands/phylotypecommand.cpp:232: compatable ==> compatible
data/mothur-1.44.3/source/commands/preclustercommand.cpp:418: eachother ==> each other
data/mothur-1.44.3/source/commands/preclustercommand.cpp:465: eachother ==> each other
data/mothur-1.44.3/source/commands/preclustercommand.cpp:1289: Lauch ==> Launch
data/mothur-1.44.3/source/commands/primerdesigncommand.cpp:57: otu ==> out
data/mothur-1.44.3/source/commands/primerdesigncommand.cpp:64: desing ==> design
data/mothur-1.44.3/source/commands/primerdesigncommand.cpp:78: otu ==> out
data/mothur-1.44.3/source/commands/primerdesigncommand.cpp:154: OTU ==> OUT
data/mothur-1.44.3/source/commands/primerdesigncommand.cpp:190: OTU ==> OUT
data/mothur-1.44.3/source/commands/primerdesigncommand.cpp:217: otu ==> out
data/mothur-1.44.3/source/commands/primerdesigncommand.cpp:622: Lauch ==> Launch
data/mothur-1.44.3/source/commands/primerdesigncommand.cpp:660: otu ==> out
data/mothur-1.44.3/source/commands/primerdesigncommand.cpp:681: otu ==> out
data/mothur-1.44.3/source/commands/primerdesigncommand.cpp:830: Lauch ==> Launch
data/mothur-1.44.3/source/commands/primerdesigncommand.cpp:1010: wih ==> with
data/mothur-1.44.3/source/commands/removegroupscommand.cpp:65: specfic ==> specific
data/mothur-1.44.3/source/commands/removelineagecommand.cpp:68: cofidence ==> confidence
data/mothur-1.44.3/source/commands/removeotuscommand.cpp:47: otu ==> out
data/mothur-1.44.3/source/commands/removeotuscommand.cpp:47: otu ==> out
data/mothur-1.44.3/source/commands/removeotuscommand.cpp:49: otu ==> out
data/mothur-1.44.3/source/commands/removeotuscommand.cpp:50: otu ==> out
data/mothur-1.44.3/source/commands/removeotuscommand.cpp:53: commmand ==> command
data/mothur-1.44.3/source/commands/removeotuscommand.cpp:222: otu ==> out
data/mothur-1.44.3/source/commands/removeotuscommand.cpp:225: otu ==> out
data/mothur-1.44.3/source/commands/removeotuscommand.cpp:228: otu ==> out
data/mothur-1.44.3/source/commands/removeotuscommand.cpp:230: otu ==> out
data/mothur-1.44.3/source/commands/removeotuscommand.cpp:232: otu ==> out
data/mothur-1.44.3/source/commands/removeotuscommand.cpp:294: otu ==> out
data/mothur-1.44.3/source/commands/removeotuscommand.cpp:331: otu ==> out
data/mothur-1.44.3/source/commands/removeotuscommand.cpp:332: otu ==> out
data/mothur-1.44.3/source/commands/removeotuscommand.cpp:335: otu ==> out
data/mothur-1.44.3/source/commands/removeotuscommand.cpp:338: otu ==> out
data/mothur-1.44.3/source/commands/removeotuscommand.cpp:374: otu ==> out
data/mothur-1.44.3/source/commands/removeotuscommand.cpp:475: wih ==> with
data/mothur-1.44.3/source/commands/removeotuscommand.cpp:545: wih ==> with
data/mothur-1.44.3/source/commands/removeotuscommand.h:32: otu ==> out
data/mothur-1.44.3/source/commands/removeotuscommand.h:32: otu ==> out
data/mothur-1.44.3/source/commands/removerarecommand.cpp:19: atleast ==> at least
data/mothur-1.44.3/source/commands/removerarecommand.cpp:20: atleast ==> at least
data/mothur-1.44.3/source/commands/removerarecommand.cpp:21: atleast ==> at least
data/mothur-1.44.3/source/commands/removerarecommand.cpp:22: atleast ==> at least
data/mothur-1.44.3/source/commands/removerarecommand.cpp:60: OTU ==> OUT
data/mothur-1.44.3/source/commands/removerarecommand.cpp:61: OTU ==> OUT
data/mothur-1.44.3/source/commands/removerarecommand.cpp:62: otu ==> out
data/mothur-1.44.3/source/commands/removerarecommand.cpp:594: otu ==> out
data/mothur-1.44.3/source/commands/removerarecommand.cpp:617: otu ==> out
data/mothur-1.44.3/source/commands/renameseqscommand.cpp:635: Opps ==> Oops
data/mothur-1.44.3/source/commands/screenseqscommand.cpp:120: tThe ==> the
data/mothur-1.44.3/source/commands/screenseqscommand.cpp:123: tRun ==> turn
data/mothur-1.44.3/source/commands/screenseqscommand.cpp:1070: Lauch ==> Launch
data/mothur-1.44.3/source/commands/sffmultiplecommand.cpp:260: excutable ==> executable
data/mothur-1.44.3/source/commands/sffmultiplecommand.cpp:430: fo ==> of, for
data/mothur-1.44.3/source/commands/sffmultiplecommand.cpp:454: fo ==> of, for
data/mothur-1.44.3/source/commands/sffmultiplecommand.cpp:714: Lauch ==> Launch
data/mothur-1.44.3/source/commands/shhhercommand.cpp:404: otu ==> out
data/mothur-1.44.3/source/commands/shhhercommand.cpp:405: otu ==> out
data/mothur-1.44.3/source/commands/shhhercommand.cpp:406: OTU ==> OUT
data/mothur-1.44.3/source/commands/shhhercommand.cpp:877: otu ==> out
data/mothur-1.44.3/source/commands/shhhercommand.cpp:878: otu ==> out
data/mothur-1.44.3/source/commands/shhhercommand.cpp:879: OTU ==> OUT
data/mothur-1.44.3/source/commands/shhhercommand.cpp:889: OTU ==> OUT
data/mothur-1.44.3/source/commands/shhhercommand.cpp:903: OTU ==> OUT
data/mothur-1.44.3/source/commands/shhhercommand.cpp:955: otu ==> out
data/mothur-1.44.3/source/commands/shhhercommand.cpp:1547: otu ==> out
data/mothur-1.44.3/source/commands/sortseqscommand.cpp:335: cant ==> can't
data/mothur-1.44.3/source/commands/sortseqscommand.cpp:514: cant ==> can't
data/mothur-1.44.3/source/commands/sortseqscommand.cpp:699: cant ==> can't
data/mothur-1.44.3/source/commands/sortseqscommand.cpp:783: cant ==> can't
data/mothur-1.44.3/source/commands/sortseqscommand.cpp:863: cant ==> can't
data/mothur-1.44.3/source/commands/sparcccommand.cpp:215: OTU ==> OUT
data/mothur-1.44.3/source/commands/sparcccommand.cpp:370: Lauch ==> Launch
data/mothur-1.44.3/source/commands/sparcccommand.h:28: commmand ==> command
data/mothur-1.44.3/source/commands/splitgroupscommand.cpp:473: Lauch ==> Launch
data/mothur-1.44.3/source/commands/splitgroupscommand.cpp:680: Lauch ==> Launch
data/mothur-1.44.3/source/commands/sracommand.cpp:155: Mutliple ==> Multiple
data/mothur-1.44.3/source/commands/subsamplecommand.cpp:384: ouptut ==> output
data/mothur-1.44.3/source/commands/subsamplecommand.cpp:804: otu ==> out
data/mothur-1.44.3/source/commands/subsamplecommand.cpp:807: otu ==> out
data/mothur-1.44.3/source/commands/subsamplecommand.cpp:810: otu ==> out
data/mothur-1.44.3/source/commands/subsamplecommand.cpp:812: otu ==> out
data/mothur-1.44.3/source/commands/subsamplecommand.cpp:814: otu ==> out
data/mothur-1.44.3/source/commands/subsamplecommand.cpp:957: hte ==> the
data/mothur-1.44.3/source/commands/subsamplecommand.cpp:1142: otu ==> out
data/mothur-1.44.3/source/commands/subsamplecommand.cpp:1145: otu ==> out
data/mothur-1.44.3/source/commands/subsamplecommand.cpp:1148: otu ==> out
data/mothur-1.44.3/source/commands/subsamplecommand.cpp:1150: otu ==> out
data/mothur-1.44.3/source/commands/subsamplecommand.cpp:1152: otu ==> out
data/mothur-1.44.3/source/commands/summarycommand.h:31: OTU ==> OUT
data/mothur-1.44.3/source/commands/summaryqualcommand.cpp:304: Lauch ==> Launch
data/mothur-1.44.3/source/commands/summarysharedcommand.cpp:532: mutiple ==> multiple
data/mothur-1.44.3/source/commands/summarysharedcommand.cpp:629: Lauch ==> Launch
data/mothur-1.44.3/source/commands/summarysharedcommand.h:74: OTU ==> OUT
data/mothur-1.44.3/source/commands/summarytaxcommand.cpp:51: concensus ==> consensus
data/mothur-1.44.3/source/commands/treesharedcommand.cpp:55: tre ==> tree
data/mothur-1.44.3/source/commands/treesharedcommand.cpp:68: tre ==> tree
data/mothur-1.44.3/source/commands/treesharedcommand.cpp:85: tre ==> tree
data/mothur-1.44.3/source/commands/treesharedcommand.cpp:673: Lauch ==> Launch
data/mothur-1.44.3/source/commands/treesharedcommand.h:67: similiarity ==> similarity
data/mothur-1.44.3/source/commands/trimflowscommand.cpp:738: Lauch ==> Launch
data/mothur-1.44.3/source/commands/trimseqscommand.cpp:267: quiting ==> quitting
data/mothur-1.44.3/source/commands/trimseqscommand.cpp:880: Lauch ==> Launch
data/mothur-1.44.3/source/commands/trimseqscommand.cpp:1113: seach ==> search
data/mothur-1.44.3/source/commands/unifracunweightedcommand.cpp:62: comparision ==> comparison
data/mothur-1.44.3/source/commands/unifracunweightedcommand.cpp:87: tre ==> tree
data/mothur-1.44.3/source/commands/unifracunweightedcommand.cpp:510: tre ==> tree
data/mothur-1.44.3/source/commands/unifracweightedcommand.cpp:62: comparision ==> comparison
data/mothur-1.44.3/source/commands/unifracweightedcommand.cpp:87: tre ==> tree
data/mothur-1.44.3/source/commands/unifracweightedcommand.cpp:446: tre ==> tree
data/mothur-1.44.3/source/commands/unifracweightedcommand.cpp:689: Lauch ==> Launch
data/mothur-1.44.3/source/commands/venncommand.cpp:264: wih ==> with
data/mothur-1.44.3/source/commands/venncommand.cpp:517: recusively ==> recursively, reclusively
data/mothur-1.44.3/source/communitytype/communitytype.cpp:14: calcualtions ==> calculations
data/mothur-1.44.3/source/communitytype/communitytype.cpp:433: calcualte ==> calculate
data/mothur-1.44.3/source/communitytype/communitytype.cpp:466: calcualte ==> calculate
data/mothur-1.44.3/source/communitytype/communitytype.cpp:536: OTU ==> OUT
data/mothur-1.44.3/source/communitytype/communitytype.cpp:662: dont' ==> don't
data/mothur-1.44.3/source/communitytype/communitytype.cpp:690: OTU ==> OUT
data/mothur-1.44.3/source/communitytype/pam.cpp:39: intial ==> initial
data/mothur-1.44.3/source/communitytype/pam.cpp:277: OTU ==> OUT
data/mothur-1.44.3/source/datastructures/alignmentcell.cpp:8: calcualte ==> calculate
data/mothur-1.44.3/source/datastructures/alignmentcell.hpp:12: calcualte ==> calculate
data/mothur-1.44.3/source/datastructures/blastalign.cpp:40: desctructor ==> destructor
data/mothur-1.44.3/source/datastructures/blastalign.cpp:146: ot ==> to, of, or
data/mothur-1.44.3/source/datastructures/blastdb.cpp:123: nin ==> inn, min, bin, nine
data/mothur-1.44.3/source/datastructures/blastdb.cpp:149: anyother ==> any other
data/mothur-1.44.3/source/datastructures/blastdb.cpp:213: anyother ==> any other
data/mothur-1.44.3/source/datastructures/counttable.cpp:47: accidently ==> accidentally
data/mothur-1.44.3/source/datastructures/counttable.cpp:982: indicies ==> indices
data/mothur-1.44.3/source/datastructures/counttable.cpp:992: indicies ==> indices
data/mothur-1.44.3/source/datastructures/counttable.cpp:1289: Otu ==> Out
data/mothur-1.44.3/source/datastructures/counttable.cpp:1294: otu ==> out
data/mothur-1.44.3/source/datastructures/counttable.cpp:1331: accidently ==> accidentally
data/mothur-1.44.3/source/datastructures/counttable.cpp:1379: accidently ==> accidentally
data/mothur-1.44.3/source/datastructures/counttable.cpp:1408: accidently ==> accidentally
data/mothur-1.44.3/source/datastructures/counttable.cpp:1605: accidently ==> accidentally
data/mothur-1.44.3/source/datastructures/counttable.cpp:1633: accidently ==> accidentally
data/mothur-1.44.3/source/datastructures/counttable.cpp:1707: accidently ==> accidentally
data/mothur-1.44.3/source/datastructures/counttable.cpp:1723: seqeunce ==> sequence
data/mothur-1.44.3/source/datastructures/counttable.cpp:1797: accidently ==> accidentally
data/mothur-1.44.3/source/datastructures/counttable.cpp:1813: seqeunce ==> sequence
data/mothur-1.44.3/source/datastructures/counttable.cpp:2039: accidently ==> accidentally
data/mothur-1.44.3/source/datastructures/counttable.cpp:2049: accidently ==> accidentally
data/mothur-1.44.3/source/datastructures/counttable.h:127: seqeunce ==> sequence
data/mothur-1.44.3/source/datastructures/datavector.hpp:8: OTU ==> OUT
data/mothur-1.44.3/source/datastructures/fastamap.cpp:150: datas ==> data
data/mothur-1.44.3/source/datastructures/filefile.hpp:35: vaild ==> valid
data/mothur-1.44.3/source/datastructures/flowdata.cpp:132: adn ==> and
data/mothur-1.44.3/source/datastructures/flowdata.cpp:149: inbetween ==> between, in between
data/mothur-1.44.3/source/datastructures/fullmatrix.h:40: eachother ==> each other
data/mothur-1.44.3/source/datastructures/groupmap.cpp:458: accidently ==> accidentally
data/mothur-1.44.3/source/datastructures/kmer.cpp:18: everytime ==> every time
data/mothur-1.44.3/source/datastructures/listvector.cpp:51: Otu ==> Out
data/mothur-1.44.3/source/datastructures/listvector.cpp:55: Otu ==> Out
data/mothur-1.44.3/source/datastructures/listvector.cpp:120: Otu ==> Out
data/mothur-1.44.3/source/datastructures/listvector.cpp:271: Otu ==> Out
data/mothur-1.44.3/source/datastructures/listvector.cpp:340: arbitary ==> arbitrary
data/mothur-1.44.3/source/datastructures/listvector.cpp:367: otu ==> out
data/mothur-1.44.3/source/datastructures/listvector.cpp:464: otu ==> out
data/mothur-1.44.3/source/datastructures/listvector.cpp:505: sav ==> save
data/mothur-1.44.3/source/datastructures/listvector.cpp:509: sav ==> save
data/mothur-1.44.3/source/datastructures/listvector.cpp:509: sav ==> save
data/mothur-1.44.3/source/datastructures/listvector.cpp:511: sav ==> save
data/mothur-1.44.3/source/datastructures/listvector.cpp:512: sav ==> save
data/mothur-1.44.3/source/datastructures/listvector.cpp:514: sav ==> save
data/mothur-1.44.3/source/datastructures/listvector.hpp:7: OTU ==> OUT
data/mothur-1.44.3/source/datastructures/listvector.hpp:9: OTU ==> OUT
data/mothur-1.44.3/source/datastructures/listvector.hpp:53: OTU ==> OUT
data/mothur-1.44.3/source/datastructures/optidb.cpp:60: otu ==> out
data/mothur-1.44.3/source/datastructures/optidb.cpp:256: occurances ==> occurrences
data/mothur-1.44.3/source/datastructures/optidb.hpp:32: ect ==> etc
data/mothur-1.44.3/source/datastructures/optirefmatrix.cpp:26: minumum ==> minimum
data/mothur-1.44.3/source/datastructures/optirefmatrix.cpp:52: betweend ==> between
data/mothur-1.44.3/source/datastructures/optirefmatrix.cpp:56: betweend ==> between
data/mothur-1.44.3/source/datastructures/optirefmatrix.cpp:256: OTU ==> OUT
data/mothur-1.44.3/source/datastructures/optirefmatrix.cpp:479: initilize ==> initialize
data/mothur-1.44.3/source/datastructures/optirefmatrix.hpp:16: OTU ==> OUT
data/mothur-1.44.3/source/datastructures/optirefmatrix.hpp:58: seqeunce ==> sequence
data/mothur-1.44.3/source/datastructures/optirefmatrix.hpp:58: chosing ==> choosing
data/mothur-1.44.3/source/datastructures/ordervector.hpp:8: OTU ==> OUT
data/mothur-1.44.3/source/datastructures/ordervector.hpp:10: OTU ==> OUT
data/mothur-1.44.3/source/datastructures/ordervector.hpp:11: OTU ==> OUT
data/mothur-1.44.3/source/datastructures/ordervector.hpp:12: OTU ==> OUT
data/mothur-1.44.3/source/datastructures/rabundfloatvector.cpp:309: sav ==> save
data/mothur-1.44.3/source/datastructures/rabundfloatvector.cpp:313: sav ==> save
data/mothur-1.44.3/source/datastructures/rabundfloatvector.cpp:313: sav ==> save
data/mothur-1.44.3/source/datastructures/rabundfloatvector.cpp:315: sav ==> save
data/mothur-1.44.3/source/datastructures/rabundfloatvector.cpp:316: sav ==> save
data/mothur-1.44.3/source/datastructures/rabundfloatvector.cpp:317: sav ==> save
data/mothur-1.44.3/source/datastructures/rabundfloatvector.hpp:15: OTU ==> OUT
data/mothur-1.44.3/source/datastructures/rabundfloatvector.hpp:17: OTU ==> OUT
data/mothur-1.44.3/source/datastructures/rabundfloatvector.hpp:18: OTU ==> OUT
data/mothur-1.44.3/source/datastructures/rabundvector.cpp:329: sav ==> save
data/mothur-1.44.3/source/datastructures/rabundvector.cpp:333: sav ==> save
data/mothur-1.44.3/source/datastructures/rabundvector.cpp:333: sav ==> save
data/mothur-1.44.3/source/datastructures/rabundvector.cpp:335: sav ==> save
data/mothur-1.44.3/source/datastructures/rabundvector.cpp:336: sav ==> save
data/mothur-1.44.3/source/datastructures/rabundvector.cpp:337: sav ==> save
data/mothur-1.44.3/source/datastructures/rabundvector.hpp:7: OTU ==> OUT
data/mothur-1.44.3/source/datastructures/rabundvector.hpp:9: OTU ==> OUT
data/mothur-1.44.3/source/datastructures/rabundvector.hpp:10: OTU ==> OUT
data/mothur-1.44.3/source/datastructures/sabundvector.cpp:22: sav ==> save
data/mothur-1.44.3/source/datastructures/sabundvector.cpp:22: sav ==> save
data/mothur-1.44.3/source/datastructures/sabundvector.cpp:24: sav ==> save
data/mothur-1.44.3/source/datastructures/sabundvector.hpp:11: OTU ==> OUT
data/mothur-1.44.3/source/datastructures/sharedclrvectors.cpp:58: Otu ==> Out
data/mothur-1.44.3/source/datastructures/sharedclrvectors.cpp:188: Otu ==> Out
data/mothur-1.44.3/source/datastructures/sharedclrvectors.hpp:32: Otu ==> Out
data/mothur-1.44.3/source/datastructures/sharedclrvectors.hpp:56: otu ==> out
data/mothur-1.44.3/source/datastructures/sharedlistvector.cpp:84: Otu ==> Out
data/mothur-1.44.3/source/datastructures/sharedlistvector.cpp:188: Otu ==> Out
data/mothur-1.44.3/source/datastructures/sharedlistvector.cpp:288: sav ==> save
data/mothur-1.44.3/source/datastructures/sharedlistvector.cpp:292: sav ==> save
data/mothur-1.44.3/source/datastructures/sharedlistvector.cpp:292: sav ==> save
data/mothur-1.44.3/source/datastructures/sharedlistvector.cpp:294: sav ==> save
data/mothur-1.44.3/source/datastructures/sharedlistvector.cpp:295: sav ==> save
data/mothur-1.44.3/source/datastructures/sharedlistvector.cpp:297: sav ==> save
data/mothur-1.44.3/source/datastructures/sharedlistvector.h:20: OTU ==> OUT
data/mothur-1.44.3/source/datastructures/sharedlistvector.h:23: OTU ==> OUT
data/mothur-1.44.3/source/datastructures/sharedlistvector.h:24: OTU ==> OUT
data/mothur-1.44.3/source/datastructures/sharedlistvector.h:60: OTU ==> OUT
data/mothur-1.44.3/source/datastructures/sharedordervector.cpp:86: otu ==> out
data/mothur-1.44.3/source/datastructures/sharedordervector.cpp:87: otu ==> out
data/mothur-1.44.3/source/datastructures/sharedordervector.h:12: OTU ==> OUT
data/mothur-1.44.3/source/datastructures/sharedordervector.h:13: similiar ==> similar
data/mothur-1.44.3/source/datastructures/sharedordervector.h:14: OTU ==> OUT
data/mothur-1.44.3/source/datastructures/sharedordervector.h:15: OTU ==> OUT
data/mothur-1.44.3/source/datastructures/sharedordervector.h:66: sepecific ==> specific
data/mothur-1.44.3/source/datastructures/sharedordervector.h:79: OTU ==> OUT
data/mothur-1.44.3/source/datastructures/sharedrabundfloatvector.cpp:265: sav ==> save
data/mothur-1.44.3/source/datastructures/sharedrabundfloatvector.cpp:269: sav ==> save
data/mothur-1.44.3/source/datastructures/sharedrabundfloatvector.cpp:269: sav ==> save
data/mothur-1.44.3/source/datastructures/sharedrabundfloatvector.cpp:271: sav ==> save
data/mothur-1.44.3/source/datastructures/sharedrabundfloatvector.cpp:272: sav ==> save
data/mothur-1.44.3/source/datastructures/sharedrabundfloatvector.cpp:273: sav ==> save
data/mothur-1.44.3/source/datastructures/sharedrabundfloatvector.hpp:18: OTU ==> OUT
data/mothur-1.44.3/source/datastructures/sharedrabundfloatvector.hpp:20: OTU ==> OUT
data/mothur-1.44.3/source/datastructures/sharedrabundfloatvector.hpp:21: OTU ==> OUT
data/mothur-1.44.3/source/datastructures/sharedrabundfloatvectors.cpp:59: Otu ==> Out
data/mothur-1.44.3/source/datastructures/sharedrabundfloatvectors.cpp:191: Otu ==> Out
data/mothur-1.44.3/source/datastructures/sharedrabundfloatvectors.hpp:27: Otu ==> Out
data/mothur-1.44.3/source/datastructures/sharedrabundfloatvectors.hpp:50: otu ==> out
data/mothur-1.44.3/source/datastructures/sharedrabundvector.cpp:279: sav ==> save
data/mothur-1.44.3/source/datastructures/sharedrabundvector.cpp:283: sav ==> save
data/mothur-1.44.3/source/datastructures/sharedrabundvector.cpp:283: sav ==> save
data/mothur-1.44.3/source/datastructures/sharedrabundvector.cpp:285: sav ==> save
data/mothur-1.44.3/source/datastructures/sharedrabundvector.cpp:286: sav ==> save
data/mothur-1.44.3/source/datastructures/sharedrabundvector.cpp:287: sav ==> save
data/mothur-1.44.3/source/datastructures/sharedrabundvector.hpp:20: OTU ==> OUT
data/mothur-1.44.3/source/datastructures/sharedrabundvector.hpp:22: OTU ==> OUT
data/mothur-1.44.3/source/datastructures/sharedrabundvector.hpp:23: OTU ==> OUT
data/mothur-1.44.3/source/datastructures/sharedrabundvectors.cpp:58: OTU ==> OUT
data/mothur-1.44.3/source/datastructures/sharedrabundvectors.cpp:67: Otu ==> Out
data/mothur-1.44.3/source/datastructures/sharedrabundvectors.cpp:298: Otu ==> Out
data/mothur-1.44.3/source/datastructures/sharedrabundvectors.hpp:28: Otu ==> Out
data/mothur-1.44.3/source/datastructures/sharedrabundvectors.hpp:55: otu ==> out
data/mothur-1.44.3/source/datastructures/taxonomy.cpp:50: otu ==> out
data/mothur-1.44.3/source/datastructures/taxonomy.cpp:53: otu ==> out
data/mothur-1.44.3/source/datastructures/taxonomy.cpp:57: otu ==> out
data/mothur-1.44.3/source/datastructures/tree.cpp:81: intialize ==> initialize
data/mothur-1.44.3/source/datastructures/tree.cpp:148: intialize ==> initialize
data/mothur-1.44.3/source/datastructures/tree.cpp:192: childs ==> children, child's
data/mothur-1.44.3/source/datastructures/tree.cpp:331: intialize ==> initialize
data/mothur-1.44.3/source/datastructures/treemap.h:35: accomadate ==> accommodate
data/mothur-1.44.3/source/datastructures/treenode.h:48: infomation ==> information
data/mothur-1.44.3/source/metastats/mothurfisher.cpp:44: Numer ==> Number
data/mothur-1.44.3/source/metastats/mothurmetastats.cpp:53: otu ==> out
data/mothur-1.44.3/source/metastats/mothurmetastats.cpp:59: otu ==> out
data/mothur-1.44.3/source/metastats/mothurmetastats.cpp:189: Otu ==> Out
data/mothur-1.44.3/source/metastats/mothurmetastats.cpp:192: Otu ==> Out
data/mothur-1.44.3/source/metastats/mothurmetastats.cpp:226: OTU ==> OUT
data/mothur-1.44.3/source/read/splitmatrix.cpp:30: ot ==> to, of, or
data/mothur-1.44.3/source/read/splitmatrix.cpp:42: ot ==> to, of, or
data/mothur-1.44.3/source/svm/svm.cpp:196: OTU ==> OUT
data/mothur-1.44.3/source/svm/svm.hpp:212: maintaing ==> maintaining
data/mothur-1.44.3/source/svm/svm.hpp:303: reseting ==> resetting
data/mothur-1.44.3/source/uchime_src/alnparams.cpp:53: te ==> the, be, we
data/mothur-1.44.3/source/uchime_src/alnparams.cpp:56: te ==> the, be, we
data/mothur-1.44.3/source/uchime_src/alnparams.cpp:56: te ==> the, be, we
data/mothur-1.44.3/source/uchime_src/alnparams.cpp:56: te ==> the, be, we
data/mothur-1.44.3/source/uchime_src/alnparams.cpp:56: te ==> the, be, we
data/mothur-1.44.3/source/uchime_src/alnparams.cpp:153: te ==> the, be, we
data/mothur-1.44.3/source/uchime_src/alpha.cpp:89: Ser ==> Set
data/mothur-1.44.3/source/uchime_src/alpha.cpp:121: Ser ==> Set
data/mothur-1.44.3/source/uchime_src/alpha.cpp:348: Ser ==> Set
data/mothur-1.44.3/source/uchime_src/alpha.cpp:380: Ser ==> Set
data/mothur-1.44.3/source/uchime_src/alpha.cpp:1314: Ser ==> Set
data/mothur-1.44.3/source/uchime_src/alpha.cpp:1316: Ser ==> Set
data/mothur-1.44.3/source/uchime_src/alpha.cpp:1357: Ser ==> Set
data/mothur-1.44.3/source/uchime_src/alpha.cpp:1358: Ser ==> Set
data/mothur-1.44.3/source/uchime_src/alpha.cpp:1359: Ser ==> Set
data/mothur-1.44.3/source/uchime_src/alpha.cpp:1360: Ser ==> Set
data/mothur-1.44.3/source/uchime_src/alpha.cpp:1382: Ser ==> Set
data/mothur-1.44.3/source/uchime_src/alpha.cpp:1384: Ser ==> Set
data/mothur-1.44.3/source/uchime_src/alpha.cpp:1425: Ser ==> Set
data/mothur-1.44.3/source/uchime_src/alpha.cpp:1426: Ser ==> Set
data/mothur-1.44.3/source/uchime_src/alpha.cpp:1427: Ser ==> Set
data/mothur-1.44.3/source/uchime_src/alpha.cpp:1428: Ser ==> Set
data/mothur-1.44.3/source/uchime_src/alpha.cpp:2044: Ser ==> Set
data/mothur-1.44.3/source/uchime_src/alpha.cpp:2076: Ser ==> Set
data/mothur-1.44.3/source/uchime_src/alpha.cpp:2756: Ser ==> Set
data/mothur-1.44.3/source/uchime_src/help.h:13: specificed ==> specified
data/mothur-1.44.3/source/uchime_src/help.h:42: Mininum ==> Minimum
data/mothur-1.44.3/source/uchime_src/help.h:92: sensivity ==> sensitivity, sensitively
data/mothur-1.44.3/source/uchime_src/myutils.cpp:1195: AddOpt ==> adopt
data/mothur-1.44.3/source/uchime_src/myutils.cpp:1218: AddOpt ==> adopt
data/mothur-1.44.3/source/uchime_src/myutils.cpp:1233: AddOpt ==> adopt
data/mothur-1.44.3/source/uchime_src/myutils.cpp:1250: AddOpt ==> adopt
data/mothur-1.44.3/source/uchime_src/myutils.cpp:1267: AddOpt ==> adopt
data/mothur-1.44.3/source/uchime_src/myutils.cpp:1284: AddOpt ==> adopt
data/mothur-1.44.3/source/uchime_src/myutils.cpp:1299: AddOpt ==> adopt
data/mothur-1.44.3/source/uchime_src/myutils.cpp:1351: AddOpt ==> adopt
data/mothur-1.44.3/source/uchime_src/sfasta.cpp:360: techincally ==> technically
data/mothur-1.44.3/debian/README.Source:27: droped ==> dropped
data/mothur-1.44.3/debian/changelog:325: droped ==> dropped
data/mothur-1.44.3/debian/changelog:334: TITILE ==> TITLE
data/mothur-1.44.3/debian/changelog:356: explicite ==> explicit, explicitly
data/mothur-1.44.3/debian/changelog:388: readd ==> re-add, read
data/mothur-1.44.3/debian/uchime.1:18: specificed ==> specified
data/mothur-1.44.3/debian/uchime.1:112: sensivity ==> sensitivity, sensitively