data/paml-4.9j+dfsg/GeneticCode.txt:3: Ser ==> Set
data/paml-4.9j+dfsg/GeneticCode.txt:13: Ser ==> Set
data/paml-4.9j+dfsg/GeneticCode.txt:26: Ser ==> Set
data/paml-4.9j+dfsg/GeneticCode.txt:36: Ser ==> Set
data/paml-4.9j+dfsg/GeneticCode.txt:65: Ser ==> Set
data/paml-4.9j+dfsg/GeneticCode.txt:88: Ser ==> Set
data/paml-4.9j+dfsg/README.txt:6: excutables ==> executables
data/paml-4.9j+dfsg/Technical/Pt/testPMat.c:8: necesarily ==> necessarily
data/paml-4.9j+dfsg/Technical/Simulation/multiruns.txt:11: progam ==> program
data/paml-4.9j+dfsg/Technical/Simulation/multiruns.txt:39: senario ==> scenario
data/paml-4.9j+dfsg/Technical/Simulation/multiruns.txt:97: senario ==> scenario
data/paml-4.9j+dfsg/Technical/Simulation/Codon/PositiveSites.c:115: evovler ==> evolver
data/paml-4.9j+dfsg/Technical/Simulation/Codon/README.txt:195: superceded ==> superseded
data/paml-4.9j+dfsg/Technical/Simulation/Codon/README.txt:251: inlcuded ==> included
data/paml-4.9j+dfsg/dat/MtZoa.dat:23: Ser ==> Set
data/paml-4.9j+dfsg/dat/cpREV10.dat:26: Ser ==> Set
data/paml-4.9j+dfsg/dat/cpREV10.dat:58: Ser ==> Set
data/paml-4.9j+dfsg/dat/cpREV10.dat:108: Ser ==> Set
data/paml-4.9j+dfsg/dat/cpREV10.dat:124: Ser ==> Set
data/paml-4.9j+dfsg/dat/cpREV64.dat:23: Ser ==> Set
data/paml-4.9j+dfsg/dat/dayhoff-dcmut.dat:26: Ser ==> Set
data/paml-4.9j+dfsg/dat/dayhoff.dat:26: Ser ==> Set
data/paml-4.9j+dfsg/dat/dayhoff.dat:62: Ser ==> Set
data/paml-4.9j+dfsg/dat/dayhoff.dat:82: Ser ==> Set
data/paml-4.9j+dfsg/dat/dayhoff.dat:82: Ser ==> Set
data/paml-4.9j+dfsg/dat/g1974a.dat:22: Ser ==> Set
data/paml-4.9j+dfsg/dat/g1974c.dat:23: Ser ==> Set
data/paml-4.9j+dfsg/dat/g1974p.dat:23: Ser ==> Set
data/paml-4.9j+dfsg/dat/g1974v.dat:23: Ser ==> Set
data/paml-4.9j+dfsg/dat/grantham.dat:23: Ser ==> Set
data/paml-4.9j+dfsg/dat/grantham.dat:45: Ser ==> Set
data/paml-4.9j+dfsg/dat/jones-dcmut.dat:26: Ser ==> Set
data/paml-4.9j+dfsg/dat/jones.dat:28: Ser ==> Set
data/paml-4.9j+dfsg/dat/jones.dat:64: Ser ==> Set
data/paml-4.9j+dfsg/dat/jones.dat:112: Ser ==> Set
data/paml-4.9j+dfsg/dat/lg.dat:24: Ser ==> Set
data/paml-4.9j+dfsg/dat/miyata.dat:21: Ser ==> Set
data/paml-4.9j+dfsg/dat/mtArt.dat:29: Ser ==> Set
data/paml-4.9j+dfsg/dat/mtREV24.dat:26: Ser ==> Set
data/paml-4.9j+dfsg/dat/mtmam.dat:26: Ser ==> Set
data/paml-4.9j+dfsg/dat/wag.dat:28: Ser ==> Set
data/paml-4.9j+dfsg/examples/README.txt:16: imcomplete ==> incomplete
data/paml-4.9j+dfsg/examples/README.txt:27: slection ==> selection
data/paml-4.9j+dfsg/examples/mtprim9.nuc:185: specied ==> specified
data/paml-4.9j+dfsg/examples/MouseLemurs/README.txt:22: mutliple ==> multiple
data/paml-4.9j+dfsg/examples/MouseLemurs/README.txt:51: optoin ==> option
data/paml-4.9j+dfsg/examples/MouseLemurs/README.txt:98: optoin ==> option
data/paml-4.9j+dfsg/examples/MouseLemurs/mtmam.dat:26: Ser ==> Set
data/paml-4.9j+dfsg/examples/TipDate.FluH1/H1.Beast.Nulldata.xml:3: BEAUTi ==> beauty
data/paml-4.9j+dfsg/examples/TipDate.FluH1/H1.Beast.Nulldata.xml:2063: aligment ==> alignment
data/paml-4.9j+dfsg/examples/TipDate.FluH1/H1.Beast.Nulldata.xml:2063: aligments ==> alignments
data/paml-4.9j+dfsg/examples/TipDate.FluH1/H1.Beast.xml:3: BEAUTi ==> beauty
data/paml-4.9j+dfsg/examples/TipDate.FluH1/H1.Beast.xml:2063: aligment ==> alignment
data/paml-4.9j+dfsg/examples/TipDate.FluH1/H1.Beast.xml:2063: aligments ==> alignments
data/paml-4.9j+dfsg/examples/TipDate.FluH1/baseml.ctl:2: tre ==> tree
data/paml-4.9j+dfsg/examples/TipDate.FluH1/mcmctreeClock1.ctl:4: tre ==> tree
data/paml-4.9j+dfsg/examples/TipDate.FluH1/mcmctreeClock2.ctl:3: tre ==> tree
data/paml-4.9j+dfsg/examples/TipDate.FluH1/mcmctreeClock3.ctl:3: tre ==> tree
data/paml-4.9j+dfsg/examples/TipDate.HIV2/README.txt:48: tre ==> tree
data/paml-4.9j+dfsg/examples/TipDate.HIV2/baseml.ctl:3: tre ==> tree
data/paml-4.9j+dfsg/examples/TipDate.HIV2/mcmctree.ExactlnL.ctl:4: tre ==> tree
data/paml-4.9j+dfsg/examples/TipDate.HIV2/mcmctree.ctl:4: tre ==> tree
data/paml-4.9j+dfsg/examples/lysozyme/README.txt:55: selectin ==> selection, selecting
data/paml-4.9j+dfsg/examples/mtCDNA/README.txt:11: incldued ==> included
data/paml-4.9j+dfsg/examples/mtCDNA/miyata.dat:21: Ser ==> Set
data/paml-4.9j+dfsg/src/TreeTimeJeff.c:10: lengthes ==> lengths
data/paml-4.9j+dfsg/src/baseml.c:223: mutliple ==> multiple
data/paml-4.9j+dfsg/src/baseml.c:1039: imcompatible ==> incompatible
data/paml-4.9j+dfsg/src/baseml.c:1041: imcompatible ==> incompatible
data/paml-4.9j+dfsg/src/baseml.c:1087: mutliple ==> multiple
data/paml-4.9j+dfsg/src/baseml.c:1352: homogeneized ==> homogenized
data/paml-4.9j+dfsg/src/chi2.c:53: nd ==> and, 2nd
data/paml-4.9j+dfsg/src/chi2.c:103: invers ==> inverse, invert
data/paml-4.9j+dfsg/src/chi2.c:106: invers ==> inverse, invert
data/paml-4.9j+dfsg/src/chi2.c:107: invers ==> inverse, invert
data/paml-4.9j+dfsg/src/chi2.c:122: invers ==> inverse, invert
data/paml-4.9j+dfsg/src/codeml.c:36: Nd ==> And, 2nd
data/paml-4.9j+dfsg/src/codeml.c:36: Nd ==> And, 2nd
data/paml-4.9j+dfsg/src/codeml.c:60: daa ==> data
data/paml-4.9j+dfsg/src/codeml.c:121: daa ==> data
data/paml-4.9j+dfsg/src/codeml.c:1442: daa ==> data
data/paml-4.9j+dfsg/src/codeml.c:1953: tranformed ==> transformed
data/paml-4.9j+dfsg/src/codeml.c:2257: caculates ==> calculates
data/paml-4.9j+dfsg/src/codeml.c:2269: mutliple ==> multiple
data/paml-4.9j+dfsg/src/codeml.c:2294: daa ==> data
data/paml-4.9j+dfsg/src/codeml.c:2321: daa ==> data
data/paml-4.9j+dfsg/src/codeml.c:2325: daa ==> data
data/paml-4.9j+dfsg/src/codeml.c:2360: homogeneized ==> homogenized
data/paml-4.9j+dfsg/src/codeml.c:2974: daa ==> data
data/paml-4.9j+dfsg/src/codeml.c:3164: contructs ==> constructs
data/paml-4.9j+dfsg/src/codeml.c:3348: daa ==> data
data/paml-4.9j+dfsg/src/codeml.c:3895: daa ==> data
data/paml-4.9j+dfsg/src/codeml.c:3910: daa ==> data
data/paml-4.9j+dfsg/src/codeml.c:3911: daa ==> data
data/paml-4.9j+dfsg/src/codeml.c:3912: daa ==> data
data/paml-4.9j+dfsg/src/codeml.c:3912: daa ==> data
data/paml-4.9j+dfsg/src/codeml.c:3913: daa ==> data
data/paml-4.9j+dfsg/src/codeml.c:3913: daa ==> data
data/paml-4.9j+dfsg/src/codeml.c:3914: daa ==> data
data/paml-4.9j+dfsg/src/codeml.c:3914: daa ==> data
data/paml-4.9j+dfsg/src/codeml.c:3920: daa ==> data
data/paml-4.9j+dfsg/src/codeml.c:3926: daa ==> data
data/paml-4.9j+dfsg/src/codeml.c:3926: daa ==> data
data/paml-4.9j+dfsg/src/codeml.c:3926: daa ==> data
data/paml-4.9j+dfsg/src/codeml.c:3927: daa ==> data
data/paml-4.9j+dfsg/src/codeml.c:3927: daa ==> data
data/paml-4.9j+dfsg/src/codeml.c:3946: daa ==> data
data/paml-4.9j+dfsg/src/codeml.c:3958: daa ==> data
data/paml-4.9j+dfsg/src/codeml.c:4015: substituion ==> substitution
data/paml-4.9j+dfsg/src/codeml.c:4550: Nd ==> And, 2nd
data/paml-4.9j+dfsg/src/codeml.c:4561: shrinked ==> shrunk
data/paml-4.9j+dfsg/src/codeml.c:4726: frequences ==> frequencies
data/paml-4.9j+dfsg/src/codeml.c:4764: Nd ==> And, 2nd
data/paml-4.9j+dfsg/src/codeml.c:4816: daa ==> data
data/paml-4.9j+dfsg/src/codeml.c:4848: daa ==> data
data/paml-4.9j+dfsg/src/codeml.c:4893: daa ==> data
data/paml-4.9j+dfsg/src/codeml.c:4920: daa ==> data
data/paml-4.9j+dfsg/src/codeml.c:4961: daa ==> data
data/paml-4.9j+dfsg/src/codeml.c:5044: mdoels ==> models
data/paml-4.9j+dfsg/src/codeml.c:5147: variabel ==> variable
data/paml-4.9j+dfsg/src/codeml.c:5321: calulated ==> calculated
data/paml-4.9j+dfsg/src/codeml.c:5541: classe ==> class, classes
data/paml-4.9j+dfsg/src/codeml.c:5545: classe ==> class, classes
data/paml-4.9j+dfsg/src/codeml.c:5928: degerate ==> degenerate
data/paml-4.9j+dfsg/src/evolver.c:44: daa ==> data
data/paml-4.9j+dfsg/src/evolver.c:167: nnumber ==> number
data/paml-4.9j+dfsg/src/evolver.c:264: tre ==> tree
data/paml-4.9j+dfsg/src/evolver.c:445: nNumber ==> number
data/paml-4.9j+dfsg/src/evolver.c:611: daa ==> data
data/paml-4.9j+dfsg/src/evolver.c:626: daa ==> data
data/paml-4.9j+dfsg/src/evolver.c:637: daa ==> data
data/paml-4.9j+dfsg/src/evolver.c:638: daa ==> data
data/paml-4.9j+dfsg/src/evolver.c:639: daa ==> data
data/paml-4.9j+dfsg/src/evolver.c:639: daa ==> data
data/paml-4.9j+dfsg/src/evolver.c:651: daa ==> data
data/paml-4.9j+dfsg/src/evolver.c:955: daa ==> data
data/paml-4.9j+dfsg/src/mcmctree.c:761: approxiamtion ==> approximation
data/paml-4.9j+dfsg/src/mcmctree.c:1688: minimun ==> minimum
data/paml-4.9j+dfsg/src/mcmctree.c:2824: conditonal ==> conditional
data/paml-4.9j+dfsg/src/mcmctree.c:2882: workes ==> works
data/paml-4.9j+dfsg/src/mcmctree.c:3790: tre ==> tree
data/paml-4.9j+dfsg/src/mcmctree.c:3866: tre ==> tree
data/paml-4.9j+dfsg/src/mcmctree.c:3868: tre ==> tree
data/paml-4.9j+dfsg/src/mcmctree.c:3874: tre ==> tree
data/paml-4.9j+dfsg/src/treespace.c:164: bA ==> by, be
data/paml-4.9j+dfsg/src/treespace.c:168: bA ==> by, be
data/paml-4.9j+dfsg/src/treespace.c:168: bA ==> by, be
data/paml-4.9j+dfsg/src/treespace.c:193: bA ==> by, be
data/paml-4.9j+dfsg/src/treespace.c:194: bA ==> by, be
data/paml-4.9j+dfsg/src/treespace.c:199: bA ==> by, be
data/paml-4.9j+dfsg/src/treespace.c:210: bA ==> by, be
data/paml-4.9j+dfsg/src/treespace.c:214: bA ==> by, be
data/paml-4.9j+dfsg/src/treespace.c:215: bA ==> by, be
data/paml-4.9j+dfsg/src/treesub.c:47: Nd ==> And, 2nd
data/paml-4.9j+dfsg/src/treesub.c:1320: containting ==> containing
data/paml-4.9j+dfsg/src/treesub.c:2356: delection ==> detection, deletion, selection
data/paml-4.9j+dfsg/src/treesub.c:2451: Nd ==> And, 2nd
data/paml-4.9j+dfsg/src/treesub.c:2994: preceeded ==> preceded, proceeded
data/paml-4.9j+dfsg/src/treesub.c:3334: exmaple ==> example
data/paml-4.9j+dfsg/src/treesub.c:3979: elments ==> elements
data/paml-4.9j+dfsg/src/treesub.c:4190: tre ==> tree
data/paml-4.9j+dfsg/src/treesub.c:4551: pertubation ==> perturbation
data/paml-4.9j+dfsg/src/treesub.c:4699: ist ==> is, it, its, it's, sit, list
data/paml-4.9j+dfsg/src/treesub.c:4706: ist ==> is, it, its, it's, sit, list
data/paml-4.9j+dfsg/src/treesub.c:4706: ist ==> is, it, its, it's, sit, list
data/paml-4.9j+dfsg/src/treesub.c:4706: ist ==> is, it, its, it's, sit, list
data/paml-4.9j+dfsg/src/treesub.c:4707: ist ==> is, it, its, it's, sit, list
data/paml-4.9j+dfsg/src/treesub.c:4708: ist ==> is, it, its, it's, sit, list
data/paml-4.9j+dfsg/src/treesub.c:4709: ist ==> is, it, its, it's, sit, list
data/paml-4.9j+dfsg/src/treesub.c:4711: ist ==> is, it, its, it's, sit, list
data/paml-4.9j+dfsg/src/treesub.c:5620: nnumber ==> number
data/paml-4.9j+dfsg/src/treesub.c:6242: approxiamte ==> approximate
data/paml-4.9j+dfsg/src/treesub.c:6441: retrive ==> retrieve
data/paml-4.9j+dfsg/src/treesub.c:6480: Nd ==> And, 2nd
data/paml-4.9j+dfsg/src/treesub.c:6495: Nd ==> And, 2nd
data/paml-4.9j+dfsg/src/treesub.c:6506: Nd ==> And, 2nd
data/paml-4.9j+dfsg/src/treesub.c:6511: Nd ==> And, 2nd
data/paml-4.9j+dfsg/src/treesub.c:6511: Nd ==> And, 2nd
data/paml-4.9j+dfsg/src/treesub.c:6512: Nd ==> And, 2nd
data/paml-4.9j+dfsg/src/treesub.c:6512: Nd ==> And, 2nd
data/paml-4.9j+dfsg/src/treesub.c:6513: Nd ==> And, 2nd
data/paml-4.9j+dfsg/src/treesub.c:6514: Nd ==> And, 2nd
data/paml-4.9j+dfsg/src/treesub.c:6514: Nd ==> And, 2nd
data/paml-4.9j+dfsg/src/treesub.c:6515: Nd ==> And, 2nd
data/paml-4.9j+dfsg/src/treesub.c:6516: Nd ==> And, 2nd
data/paml-4.9j+dfsg/src/treesub.c:6517: Nd ==> And, 2nd
data/paml-4.9j+dfsg/src/treesub.c:6523: Nd ==> And, 2nd
data/paml-4.9j+dfsg/src/treesub.c:6524: Nd ==> And, 2nd
data/paml-4.9j+dfsg/src/treesub.c:6984: travesal ==> traversal
data/paml-4.9j+dfsg/src/treesub.c:7080: calcualtion ==> calculation
data/paml-4.9j+dfsg/src/treesub.c:7664: paramters ==> parameters
data/paml-4.9j+dfsg/src/treesub.c:9043: daa ==> data
data/paml-4.9j+dfsg/src/treesub.c:9714: tage ==> stage, take, tag, tagged
data/paml-4.9j+dfsg/src/yn00.c:395: Nd ==> And, 2nd
data/paml-4.9j+dfsg/src/yn00.c:429: Nd ==> And, 2nd
data/paml-4.9j+dfsg/src/yn00.c:434: Nd ==> And, 2nd
data/paml-4.9j+dfsg/src/yn00.c:440: Nd ==> And, 2nd
data/paml-4.9j+dfsg/debian/changelog:86: theses ==> these, thesis