data/phyutility-2.7.3+dfsg/src/jade/math/AP_Praxis.java:12: vlarge ==> large data/phyutility-2.7.3+dfsg/src/jade/math/AP_Praxis.java:42: vlarge ==> large data/phyutility-2.7.3+dfsg/src/jade/math/AP_Praxis.java:218: vlarge ==> large data/phyutility-2.7.3+dfsg/src/jade/math/AP_Praxis.java:260: vlarge ==> large data/phyutility-2.7.3+dfsg/src/jade/math/ExponentialDistribution.java:42: intregral ==> integral data/phyutility-2.7.3+dfsg/src/jade/math/Utils.java:367: corresonding ==> corresponding data/phyutility-2.7.3+dfsg/src/jade/reconstruct/area/MarginalRangeReconstructor.java:242: instaed ==> instead data/phyutility-2.7.3+dfsg/src/jade/reconstruct/area/MarginalRangeReconstructor.java:242: seperateely ==> separately data/phyutility-2.7.3+dfsg/src/jade/reconstruct/discrete/P.java:4: assymetrical ==> asymmetrical data/phyutility-2.7.3+dfsg/src/jade/runners/GBParserMain.java:44: tthe ==> the data/phyutility-2.7.3+dfsg/src/jade/simulate/Area.java:36: relavent ==> relevant data/phyutility-2.7.3+dfsg/src/jade/simulate/BioGeoTree.java:206: tre ==> tree data/phyutility-2.7.3+dfsg/src/jade/simulate/BioGeoTree.java:457: seperate ==> separate data/phyutility-2.7.3+dfsg/src/jebl/evolution/align/Align.java:109: matchs ==> matches data/phyutility-2.7.3+dfsg/src/jebl/evolution/align/Align.java:175: auxillary ==> auxiliary data/phyutility-2.7.3+dfsg/src/jebl/evolution/align/AlignCommand.java:218: atleast ==> at least data/phyutility-2.7.3+dfsg/src/jebl/evolution/align/AlignCommand.java:389: mesage ==> message data/phyutility-2.7.3+dfsg/src/jebl/evolution/alignments/ResampledAlignment.java:21: replacment ==> replacement data/phyutility-2.7.3+dfsg/src/jebl/evolution/characters/DiscreteCharacter.java:87: characeter ==> character data/phyutility-2.7.3+dfsg/src/jebl/evolution/coalescent/ConstantPopulation.java:70: unecessary ==> unnecessary data/phyutility-2.7.3+dfsg/src/jebl/evolution/coalescent/IntervalList.java:13: intevals ==> intervals data/phyutility-2.7.3+dfsg/src/jebl/evolution/coalescent/Intervals.java:19: intevals ==> intervals data/phyutility-2.7.3+dfsg/src/jebl/evolution/distances/HKYDistanceMatrix.java:30: wheather ==> weather, whether data/phyutility-2.7.3+dfsg/src/jebl/evolution/distances/HKYDistanceMatrix.java:70: neccesarily ==> necessarily data/phyutility-2.7.3+dfsg/src/jebl/evolution/distances/TamuraNeiDistanceMatrix.java:21: respectivly ==> respectively data/phyutility-2.7.3+dfsg/src/jebl/evolution/distances/TamuraNeiDistanceMatrix.java:26: amout ==> amount data/phyutility-2.7.3+dfsg/src/jebl/evolution/io/FastaImporter.java:132: althought ==> although data/phyutility-2.7.3+dfsg/src/jebl/evolution/io/FastaImporter.java:203: memeory ==> memory data/phyutility-2.7.3+dfsg/src/jebl/evolution/io/ImportHelper.java:246: consectutive ==> consecutive data/phyutility-2.7.3+dfsg/src/jebl/evolution/io/NewickImporter.java:27: unqouted ==> unquoted data/phyutility-2.7.3+dfsg/src/jebl/evolution/io/NewickImporter.java:27: lables ==> labels data/phyutility-2.7.3+dfsg/src/jebl/evolution/io/NexusExporter.java:168: symetric ==> symmetric data/phyutility-2.7.3+dfsg/src/jebl/evolution/io/NexusExporter.java:310: whet ==> when, what, wet data/phyutility-2.7.3+dfsg/src/jebl/evolution/io/NexusImporter.java:704: doesnt ==> doesn't, does not data/phyutility-2.7.3+dfsg/src/jebl/evolution/io/NexusImporter.java:1344: qouted ==> quoted data/phyutility-2.7.3+dfsg/src/jebl/evolution/io/PHYLIPExporter.java:17: hopefuly ==> hopefully data/phyutility-2.7.3+dfsg/src/jebl/evolution/parsimony/FitchParsimony.java:182: reasy ==> ready, easy data/phyutility-2.7.3+dfsg/src/jebl/evolution/sequences/AminoAcids.java:109: Ser ==> Set data/phyutility-2.7.3+dfsg/src/jebl/evolution/sequences/Utils.java:295: implicitely ==> implicitly data/phyutility-2.7.3+dfsg/src/jebl/evolution/substmodel/AbstractRateMatrix.java:242: acheive ==> achieve data/phyutility-2.7.3+dfsg/src/jebl/evolution/trees/ClusteringTreeBuilder.java:98: completly ==> completely data/phyutility-2.7.3+dfsg/src/jebl/evolution/trees/CompactRootedTree.java:19: Maximun ==> Maximum data/phyutility-2.7.3+dfsg/src/jebl/evolution/trees/CompactRootedTree.java:40: decendents ==> descendents, descendants data/phyutility-2.7.3+dfsg/src/jebl/evolution/trees/CompactRootedTree.java:41: reffered ==> referred data/phyutility-2.7.3+dfsg/src/jebl/evolution/trees/CompactRootedTree.java:52: Decendents ==> Descendents, descendants data/phyutility-2.7.3+dfsg/src/jebl/evolution/trees/CompactRootedTree.java:58: Decendents ==> Descendents, descendants data/phyutility-2.7.3+dfsg/src/jebl/evolution/trees/CompactRootedTree.java:78: insted ==> instead data/phyutility-2.7.3+dfsg/src/jebl/evolution/trees/CompactRootedTree.java:102: attributs ==> attributes data/phyutility-2.7.3+dfsg/src/jebl/evolution/trees/CompactRootedTree.java:162: decendents ==> descendents, descendants data/phyutility-2.7.3+dfsg/src/jebl/evolution/trees/CompactRootedTree.java:224: decendents ==> descendents, descendants data/phyutility-2.7.3+dfsg/src/jebl/evolution/trees/CompactRootedTree.java:231: decendents ==> descendents, descendants data/phyutility-2.7.3+dfsg/src/jebl/evolution/trees/CompactRootedTree.java:270: decendents ==> descendents, descendants data/phyutility-2.7.3+dfsg/src/jebl/evolution/trees/ConsensusTreeBuilder.java:21: specifing ==> specifying data/phyutility-2.7.3+dfsg/src/jebl/evolution/trees/ConsensusTreeBuilder.java:55: consistancy ==> consistency data/phyutility-2.7.3+dfsg/src/jebl/evolution/trees/MRCACConsensusTreeBuilder.java:56: decendentants ==> descendants data/phyutility-2.7.3+dfsg/src/jebl/evolution/trees/MostProbableTopology.java:325: frequencey ==> frequency data/phyutility-2.7.3+dfsg/src/jebl/evolution/trees/MutableRootedTree.java:118: recursivly ==> recursively data/phyutility-2.7.3+dfsg/src/jebl/evolution/trees/MutableRootedTree.java:119: recursivly ==> recursively data/phyutility-2.7.3+dfsg/src/jebl/evolution/trees/MutableRootedTree.java:119: ommiting ==> omitting data/phyutility-2.7.3+dfsg/src/jebl/evolution/trees/MutableRootedTree.java:220: stucture ==> structure data/phyutility-2.7.3+dfsg/src/jebl/evolution/trees/MutableRootedTree.java:349: refered ==> referred data/phyutility-2.7.3+dfsg/src/jebl/evolution/trees/MutableRootedTree.java:357: refered ==> referred data/phyutility-2.7.3+dfsg/src/jebl/evolution/trees/RootedFromUnrooted.java:46: recursivly ==> recursively data/phyutility-2.7.3+dfsg/src/jebl/evolution/trees/RootedFromUnrooted.java:217: syntetic ==> synthetic data/phyutility-2.7.3+dfsg/src/jebl/evolution/trees/RootedFromUnrooted.java:234: syntetic ==> synthetic data/phyutility-2.7.3+dfsg/src/jebl/evolution/trees/SimpleRootedTree.java:153: stucture ==> structure data/phyutility-2.7.3+dfsg/src/jebl/evolution/trees/SimpleRootedTree.java:282: refered ==> referred data/phyutility-2.7.3+dfsg/src/jebl/evolution/trees/SimpleRootedTree.java:290: refered ==> referred data/phyutility-2.7.3+dfsg/src/jebl/evolution/trees/SimpleTree.java:51: stucture ==> structure data/phyutility-2.7.3+dfsg/src/jebl/evolution/trees/SimpleTree.java:186: refered ==> referred data/phyutility-2.7.3+dfsg/src/jebl/evolution/trees/SimpleTree.java:194: refered ==> referred data/phyutility-2.7.3+dfsg/src/jebl/evolution/trees/SplitUtils.java:76: alway ==> always data/phyutility-2.7.3+dfsg/src/jebl/evolution/trees/Tree.java:36: refered ==> referred data/phyutility-2.7.3+dfsg/src/jebl/evolution/trees/Tree.java:42: refered ==> referred data/phyutility-2.7.3+dfsg/src/jebl/evolution/trees/TreeBiPartitionInfo.java:92: dout ==> doubt data/phyutility-2.7.3+dfsg/src/jebl/evolution/trees/TreeBiPartitionInfo.java:121: dout ==> doubt data/phyutility-2.7.3+dfsg/src/jebl/evolution/trees/TreeBiPartitionInfo.java:124: dout ==> doubt data/phyutility-2.7.3+dfsg/src/jebl/evolution/trees/TreeBiPartitionInfo.java:128: dout ==> doubt data/phyutility-2.7.3+dfsg/src/jebl/evolution/trees/TreeBuilderFactory.java:7: develope ==> develop data/phyutility-2.7.3+dfsg/src/jebl/evolution/trees/TreeBuilderFactory.java:40: Wheather ==> Weather, whether data/phyutility-2.7.3+dfsg/src/jebl/evolution/trees/Utils.java:103: whet ==> when, what, wet data/phyutility-2.7.3+dfsg/src/jebl/evolution/trees/Utils.java:291: childern ==> children data/phyutility-2.7.3+dfsg/src/jebl/gui/trees/treecomponent/RootedTreeComponent.java:77: hilight ==> highlight data/phyutility-2.7.3+dfsg/src/jebl/gui/trees/treecomponent/RootedTreeComponent.java:93: hilight ==> highlight data/phyutility-2.7.3+dfsg/src/jebl/gui/trees/treecomponent/RootedTreePainter.java:30: hilight ==> highlight data/phyutility-2.7.3+dfsg/src/jebl/gui/trees/treecomponent/RootedTreePainter.java:40: hilight ==> highlight data/phyutility-2.7.3+dfsg/src/jebl/gui/trees/treecomponent/SquareTreePainter.java:67: hilight ==> highlight data/phyutility-2.7.3+dfsg/src/jebl/gui/trees/treecomponent/SquareTreePainter.java:87: hilight ==> highlight data/phyutility-2.7.3+dfsg/src/jebl/gui/trees/treecomponent/SquareTreePainter.java:132: currentY ==> currently data/phyutility-2.7.3+dfsg/src/jebl/gui/trees/treecomponent/SquareTreePainter.java:151: hilight ==> highlight data/phyutility-2.7.3+dfsg/src/jebl/gui/trees/treecomponent/SquareTreePainter.java:168: currentY ==> currently data/phyutility-2.7.3+dfsg/src/jebl/gui/trees/treecomponent/SquareTreePainter.java:169: currentY ==> currently data/phyutility-2.7.3+dfsg/src/jebl/gui/trees/treecomponent/SquareTreePainter.java:173: currentY ==> currently data/phyutility-2.7.3+dfsg/src/jebl/gui/trees/treecomponent/SquareTreePainter.java:174: currentY ==> currently data/phyutility-2.7.3+dfsg/src/jebl/gui/trees/treecomponent/SquareTreePainter.java:177: hilight ==> highlight data/phyutility-2.7.3+dfsg/src/jebl/gui/trees/treecomponent/SquareTreePainter.java:200: hilight ==> highlight data/phyutility-2.7.3+dfsg/src/jebl/gui/trees/treecomponent/SquareTreePainter.java:217: hilight ==> highlight data/phyutility-2.7.3+dfsg/src/jebl/gui/trees/treecomponent/SquareTreePainter.java:224: hilight ==> highlight data/phyutility-2.7.3+dfsg/src/jebl/gui/trees/treecomponent/SquareTreePainter.java:230: hilight ==> highlight data/phyutility-2.7.3+dfsg/src/jebl/gui/trees/treecomponent/SquareTreePainter.java:300: currentY ==> currently data/phyutility-2.7.3+dfsg/src/jebl/gui/trees/treeviewer/MultipleTreeViewer.java:97: becasue ==> because data/phyutility-2.7.3+dfsg/src/jebl/gui/trees/treeviewer/TreeDrawableElement.java:249: elemens ==> elements data/phyutility-2.7.3+dfsg/src/jebl/gui/trees/treeviewer/TreeDrawableElement.java:257: decending ==> descending data/phyutility-2.7.3+dfsg/src/jebl/gui/trees/treeviewer/TreeDrawableElement.java:372: accomodate ==> accommodate data/phyutility-2.7.3+dfsg/src/jebl/gui/trees/treeviewer/TreeDrawableElementLabel.java:56: efficency ==> efficiency data/phyutility-2.7.3+dfsg/src/jebl/gui/trees/treeviewer/TreeDrawableElementLabel.java:56: lables ==> labels data/phyutility-2.7.3+dfsg/src/jebl/gui/trees/treeviewer/TreeDrawableElementNodeLabel.java:26: lable ==> label data/phyutility-2.7.3+dfsg/src/jebl/gui/trees/treeviewer/TreeDrawableElementNodeLabel.java:78: transorm ==> transform data/phyutility-2.7.3+dfsg/src/jebl/gui/trees/treeviewer/TreeDrawableElementNodeLabel.java:89: transorm ==> transform data/phyutility-2.7.3+dfsg/src/jebl/gui/trees/treeviewer/TreePane.java:511: currect ==> correct, current data/phyutility-2.7.3+dfsg/src/jebl/gui/trees/treeviewer/TreePane.java:587: lables ==> labels data/phyutility-2.7.3+dfsg/src/jebl/gui/trees/treeviewer/TreePane.java:1141: efficency ==> efficiency data/phyutility-2.7.3+dfsg/src/jebl/gui/trees/treeviewer/TreePane.java:1339: layed ==> laid data/phyutility-2.7.3+dfsg/src/jebl/gui/trees/treeviewer/TreePane.java:1646: efficency ==> efficiency data/phyutility-2.7.3+dfsg/src/jebl/gui/trees/treeviewer/TreePane.java:1792: safty ==> safety data/phyutility-2.7.3+dfsg/src/jebl/gui/trees/treeviewer/TreePaneSelector.java:46: doubleClick ==> double-click data/phyutility-2.7.3+dfsg/src/jebl/gui/trees/treeviewer/TreePaneSelector.java:51: doubleClick ==> double-click data/phyutility-2.7.3+dfsg/src/jebl/gui/trees/treeviewer/TreePaneSelector.java:75: doubleClick ==> double-click data/phyutility-2.7.3+dfsg/src/jebl/gui/trees/treeviewer_dev/TreePane.java:1029: layed ==> laid data/phyutility-2.7.3+dfsg/src/jebl/gui/trees/treeviewer_dev/painters/NodeBarPainter.java:108: heigher ==> higher data/phyutility-2.7.3+dfsg/src/jebl/gui/trees/treeviewer_dev/painters/NodeHistPainter.java:108: heigher ==> higher data/phyutility-2.7.3+dfsg/src/jebl/gui/trees/treeviewer_dev/painters/ScaleAxisPainter.java:209: co-ordinates ==> coordinates data/phyutility-2.7.3+dfsg/src/jebl/gui/trees/treeviewer_dev/painters/ScaleAxisPainter.java:209: co-ordinates ==> coordinates data/phyutility-2.7.3+dfsg/src/jebl/gui/trees/treeviewer_dev/painters/ScaleBarAxis.java:23: prefered ==> preferred data/phyutility-2.7.3+dfsg/src/jebl/gui/trees/treeviewer_dev/painters/ScaleBarAxis.java:50: HALFS ==> HALVES data/phyutility-2.7.3+dfsg/src/jebl/gui/trees/treeviewer_dev/painters/ScaleBarAxis.java:206: neccessary ==> necessary data/phyutility-2.7.3+dfsg/src/jebl/gui/trees/treeviewer_dev/painters/ScaleBarAxis.java:342: HALFS ==> HALVES data/phyutility-2.7.3+dfsg/src/jebl/gui/trees/treeviewer_dev/painters/ScaleBarAxis.java:551: formating ==> formatting data/phyutility-2.7.3+dfsg/src/jebl/math/MersenneTwisterFast.java:88: inforce ==> enforce data/phyutility-2.7.3+dfsg/src/jebl/math/MersenneTwisterFast.java:91: curernt ==> current data/phyutility-2.7.3+dfsg/src/jebl/math/MersenneTwisterFast.java:123: Initalize ==> Initialize data/phyutility-2.7.3+dfsg/src/jebl/math/MultivariateMinimum.java:151: succesful ==> successful data/phyutility-2.7.3+dfsg/src/jebl/math/OrderEnumerator.java:33: differnet ==> different data/phyutility-2.7.3+dfsg/src/jebl/math/OrderEnumerator.java:350: untill ==> until data/phyutility-2.7.3+dfsg/src/jebl/math/OrthogonalHints.java:16: alow ==> allow data/phyutility-2.7.3+dfsg/src/jebl/math/OrthogonalHints.java:57: upto ==> up to data/phyutility-2.7.3+dfsg/src/jebl/math/UnivariateMinimum.java:43: neccessary ==> necessary data/phyutility-2.7.3+dfsg/src/jebl/util/CompositeProgressListener.java:14: explicitely ==> explicitly data/phyutility-2.7.3+dfsg/src/jebl/util/Utils.java:293: formating ==> formatting data/phyutility-2.7.3+dfsg/src/jebl/util/Utils.java:309: formating ==> formatting data/phyutility-2.7.3+dfsg/src/jebl/util/Utils.java:325: formating ==> formatting data/phyutility-2.7.3+dfsg/src/jebl/util/Utils.java:334: formating ==> formatting data/phyutility-2.7.3+dfsg/src/jebl/util/Utils.java:352: formating ==> formatting data/phyutility-2.7.3+dfsg/src/jebl/util/Utils.java:361: formating ==> formatting data/phyutility-2.7.3+dfsg/src/jebl/util/Utils.java:370: formating ==> formatting data/phyutility-2.7.3+dfsg/src/jebl/util/Utils.java:388: formating ==> formatting data/phyutility-2.7.3+dfsg/src/jebl/util/Utils.java:401: formating ==> formatting data/phyutility-2.7.3+dfsg/src/org/virion/jam/framework/AbstractFrame.java:255: overriden ==> overridden data/phyutility-2.7.3+dfsg/src/org/virion/jam/framework/AbstractFrame.java:261: overriden ==> overridden data/phyutility-2.7.3+dfsg/src/org/virion/jam/framework/Application.java:21: persistance ==> persistence data/phyutility-2.7.3+dfsg/src/org/virion/jam/layouts/CompassLayout.java:10: layed ==> laid data/phyutility-2.7.3+dfsg/src/org/virion/jam/layouts/CompassLayout.java:13: layed ==> laid data/phyutility-2.7.3+dfsg/src/org/virion/jam/util/BrowserLauncher.java:45: repsonsible ==> responsible data/phyutility-2.7.3+dfsg/src/org/virion/jam/util/BrowserLauncher.java:252: intialization ==> initialization data/phyutility-2.7.3+dfsg/src/org/virion/jam/util/BrowserLauncher.java:495: someting ==> something data/phyutility-2.7.3+dfsg/src/org/xml/sax/HandlerBase.java:64: identifer ==> identifier data/phyutility-2.7.3+dfsg/src/org/xml/sax/ext/EntityResolver2.java:109: attibutes ==> attributes data/phyutility-2.7.3+dfsg/src/org/xml/sax/helpers/DefaultHandler.java:78: identifer ==> identifier data/phyutility-2.7.3+dfsg/src/phyutility/drb/WwdEmbedded.java:220: occured ==> occurred data/phyutility-2.7.3+dfsg/src/phyutility/mainrunner/Main.java:164: threshhold ==> threshold data/phyutility-2.7.3+dfsg/src/phyutility/mainrunner/Main.java:280: seperator ==> separator data/phyutility-2.7.3+dfsg/src/phyutility/mainrunner/Main.java:1187: tthe ==> the data/phyutility-2.7.3+dfsg/src/phyutility/mainrunner/Main.java:1460: tre ==> tree data/phyutility-2.7.3+dfsg/src/phyutility/mainrunner/Main.java:1467: tre ==> tree data/phyutility-2.7.3+dfsg/src/phyutility/mainrunner/Main.java:1473: tre ==> tree data/phyutility-2.7.3+dfsg/src/phyutility/mainrunner/Main.java:1482: tre ==> tree data/phyutility-2.7.3+dfsg/src/phyutility/mainrunner/Main.java:1482: tre ==> tree data/phyutility-2.7.3+dfsg/src/phyutility/mainrunner/Main.java:1490: tre ==> tree data/phyutility-2.7.3+dfsg/src/phyutility/mainrunner/Main.java:1490: tre ==> tree data/phyutility-2.7.3+dfsg/src/phyutility/mainrunner/Main.java:1498: tre ==> tree data/phyutility-2.7.3+dfsg/src/phyutility/mainrunner/Main.java:1498: tre ==> tree data/phyutility-2.7.3+dfsg/src/phyutility/mainrunner/Main.java:1505: tre ==> tree data/phyutility-2.7.3+dfsg/src/phyutility/mainrunner/Main.java:1505: tre ==> tree data/phyutility-2.7.3+dfsg/src/phyutility/mainrunner/Main.java:1513: tre ==> tree data/phyutility-2.7.3+dfsg/src/phyutility/mainrunner/Main.java:1513: tre ==> tree data/phyutility-2.7.3+dfsg/src/phyutility/mainrunner/Main.java:1515: threshhold ==> threshold data/phyutility-2.7.3+dfsg/src/phyutility/mainrunner/Main.java:1538: seperator ==> separator data/phyutility-2.7.3+dfsg/src/phyutility/mainrunner/Main.java:1538: seperator ==> separator data/phyutility-2.7.3+dfsg/src/phyutility/mainrunner/TestFuncs.java:92: threshhold ==> threshold data/phyutility-2.7.3+dfsg/src/phyutility/mainrunner/TestFuncs.java:115: seqence ==> sequence data/phyutility-2.7.3+dfsg/src/phyutility/mainrunner/TestFuncs.java:744: ambigious ==> ambiguous data/phyutility-2.7.3+dfsg/src/phyutility/trimsites/TrimSites.java:187: trimed ==> trimmed data/phyutility-2.7.3+dfsg/debian/phyutility.1:42: tre ==> tree data/phyutility-2.7.3+dfsg/debian/phyutility.1:43: tre ==> tree data/phyutility-2.7.3+dfsg/debian/phyutility.1:44: tre ==> tree data/phyutility-2.7.3+dfsg/debian/phyutility.1:45: tre ==> tree