data/phyx-1.01+ds/doc/Phyxed_Manual.tex:104: tre ==> tree
data/phyx-1.01+ds/doc/Phyxed_Manual.tex:139: tre ==> tree
data/phyx-1.01+ds/doc/Phyxed_Manual.tex:183: tre ==> tree
data/phyx-1.01+ds/doc/Phyxed_Manual.tex:229: tre ==> tree
data/phyx-1.01+ds/doc/Phyxed_Manual.tex:240: tre ==> tree
data/phyx-1.01+ds/doc/Phyxed_Manual.tex:277: specifiying ==> specifying
data/phyx-1.01+ds/doc/Phyxed_Manual.tex:321: tre ==> tree
data/phyx-1.01+ds/doc/Phyxed_Manual.tex:342: tre ==> tree
data/phyx-1.01+ds/doc/Phyxed_Manual.tex:353: tre ==> tree
data/phyx-1.01+ds/doc/Phyxed_Manual.tex:378: tre ==> tree
data/phyx-1.01+ds/doc/Phyxed_Manual.tex:414: tre ==> tree
data/phyx-1.01+ds/doc/Phyxed_Manual.tex:460: Arithmatic ==> Arithmetic
data/phyx-1.01+ds/example_files/pxfqfilt_example/fqfilt_test.fastq:80: BA ==> BY, BE
data/phyx-1.01+ds/example_files/pxfqfilt_example/fqfilt_test.fastq:92: BA ==> BY, BE
data/phyx-1.01+ds/example_files/pxfqfilt_example/fqfilt_test.fastq:256: DED ==> DEAD
data/phyx-1.01+ds/example_files/pxfqfilt_example/fqfilt_test.fastq:356: BA ==> BY, BE
data/phyx-1.01+ds/example_files/pxfqfilt_example/fqfilt_test.fastq:568: EGE ==> EDGE
data/phyx-1.01+ds/example_files/pxfqfilt_example/fqfilt_test.fastq:584: BA ==> BY, BE
data/phyx-1.01+ds/example_files/pxfqfilt_example/fqfilt_test.fastq:956: EGE ==> EDGE
data/phyx-1.01+ds/example_files/pxfqfilt_example/fqfilt_test.fastq:976: BA ==> BY, BE
data/phyx-1.01+ds/example_files/pxfqfilt_example/fqfilt_test.fastq:1560: BA ==> BY, BE
data/phyx-1.01+ds/example_files/pxfqfilt_example/fqfilt_test.fastq:1636: BA ==> BY, BE
data/phyx-1.01+ds/example_files/pxfqfilt_example/fqfilt_test.fastq:1904: AFE ==> SAFE
data/phyx-1.01+ds/example_files/pxfqfilt_example/fqfilt_test.fastq:2224: EDE ==> EDGE
data/phyx-1.01+ds/example_files/pxfqfilt_example/fqfilt_test.fastq:2352: AFE ==> SAFE
data/phyx-1.01+ds/example_files/pxfqfilt_example/fqfilt_test.fastq:2480: BA ==> BY, BE
data/phyx-1.01+ds/example_files/pxfqfilt_example/fqfilt_test.fastq:2736: BA ==> BY, BE
data/phyx-1.01+ds/example_files/pxfqfilt_example/fqfilt_test.fastq:2780: DED ==> DEAD
data/phyx-1.01+ds/example_files/pxfqfilt_example/fqfilt_test.fastq:3132: BA ==> BY, BE
data/phyx-1.01+ds/example_files/pxfqfilt_example/fqfilt_test.fastq:3340: BA ==> BY, BE
data/phyx-1.01+ds/example_files/pxfqfilt_example/fqfilt_test.fastq:3872: BA ==> BY, BE
data/phyx-1.01+ds/example_files/pxstrec_example/config_stmap:1: tre ==> tree
data/phyx-1.01+ds/example_files/pxstrec_example/config_stmap:13: tre ==> tree
data/phyx-1.01+ds/example_files/pxstrec_example/config_stmap:14: tre ==> tree
data/phyx-1.01+ds/src/bd_fit.cpp:153: lik ==> like, lick, link
data/phyx-1.01+ds/src/bd_fit.cpp:155: lik ==> like, lick, link
data/phyx-1.01+ds/src/bd_fit.cpp:162: lik ==> like, lick, link
data/phyx-1.01+ds/src/bd_fit.cpp:170: lik ==> like, lick, link
data/phyx-1.01+ds/src/bd_fit.cpp:176: lik ==> like, lick, link
data/phyx-1.01+ds/src/bd_fit.h:34: lik ==> like, lick, link
data/phyx-1.01+ds/src/edlib.cpp:669: dinamically ==> dynamically
data/phyx-1.01+ds/src/edlib.cpp:1176: halfs ==> halves
data/phyx-1.01+ds/src/edlib.h:153: begining ==> beginning
data/phyx-1.01+ds/src/expokit.f:44: wich ==> which
data/phyx-1.01+ds/src/expokit.f:94: occured ==> occurred
data/phyx-1.01+ds/src/expokit.f:102: occured ==> occurred
data/phyx-1.01+ds/src/expokit.f:468: iput ==> input
data/phyx-1.01+ds/src/expokit.f:571: iput ==> input
data/phyx-1.01+ds/src/expokit.f:582: iput ==> input
data/phyx-1.01+ds/src/expokit.f:584: iput ==> input
data/phyx-1.01+ds/src/expokit.f:588: iput ==> input
data/phyx-1.01+ds/src/expokit.f:638: iput ==> input
data/phyx-1.01+ds/src/expokit.f:741: iput ==> input
data/phyx-1.01+ds/src/expokit.f:752: iput ==> input
data/phyx-1.01+ds/src/expokit.f:754: iput ==> input
data/phyx-1.01+ds/src/expokit.f:758: iput ==> input
data/phyx-1.01+ds/src/expokit.f:809: iput ==> input
data/phyx-1.01+ds/src/expokit.f:914: iput ==> input
data/phyx-1.01+ds/src/expokit.f:925: iput ==> input
data/phyx-1.01+ds/src/expokit.f:927: iput ==> input
data/phyx-1.01+ds/src/expokit.f:931: iput ==> input
data/phyx-1.01+ds/src/expokit.f:981: iput ==> input
data/phyx-1.01+ds/src/expokit.f:1086: iput ==> input
data/phyx-1.01+ds/src/expokit.f:1097: iput ==> input
data/phyx-1.01+ds/src/expokit.f:1099: iput ==> input
data/phyx-1.01+ds/src/expokit.f:1103: iput ==> input
data/phyx-1.01+ds/src/expokit.f:1659: wich ==> which
data/phyx-1.01+ds/src/expokit.f:1705: occured ==> occurred
data/phyx-1.01+ds/src/expokit.f:1713: occured ==> occurred
data/phyx-1.01+ds/src/expokit.f:2039: wich ==> which
data/phyx-1.01+ds/src/expokit.f:2086: occured ==> occurred
data/phyx-1.01+ds/src/expokit.f:2094: occured ==> occurred
data/phyx-1.01+ds/src/expokit.f:2423: wich ==> which
data/phyx-1.01+ds/src/expokit.f:2470: occured ==> occurred
data/phyx-1.01+ds/src/expokit.f:2478: occured ==> occurred
data/phyx-1.01+ds/src/expokit.f:2808: wich ==> which
data/phyx-1.01+ds/src/expokit.f:2855: occured ==> occurred
data/phyx-1.01+ds/src/expokit.f:2863: occured ==> occurred
data/phyx-1.01+ds/src/expokit.f:3193: wich ==> which
data/phyx-1.01+ds/src/expokit.f:3244: occured ==> occurred
data/phyx-1.01+ds/src/expokit.f:3252: occured ==> occurred
data/phyx-1.01+ds/src/expokit.f:3551: wich ==> which
data/phyx-1.01+ds/src/expokit.f:3602: occured ==> occurred
data/phyx-1.01+ds/src/expokit.f:3610: occured ==> occurred
data/phyx-1.01+ds/src/expokit.f:3917: wich ==> which
data/phyx-1.01+ds/src/expokit.f:3968: occured ==> occurred
data/phyx-1.01+ds/src/expokit.f:3976: occured ==> occurred
data/phyx-1.01+ds/src/expokit.f:4285: wich ==> which
data/phyx-1.01+ds/src/expokit.f:4336: occured ==> occurred
data/phyx-1.01+ds/src/expokit.f:4344: occured ==> occurred
data/phyx-1.01+ds/src/lapack.f:4: environement ==> environment
data/phyx-1.01+ds/src/main.cpp:28: tre ==> tree
data/phyx-1.01+ds/src/main.cpp:28: tre ==> tree
data/phyx-1.01+ds/src/main_bp.cpp:30: tre ==> tree
data/phyx-1.01+ds/src/main_bp.cpp:324: dont' ==> don't
data/phyx-1.01+ds/src/main_bp.cpp:602: mot ==> not
data/phyx-1.01+ds/src/main_bp.cpp:603: mot ==> not
data/phyx-1.01+ds/src/main_bp.cpp:603: mot ==> not
data/phyx-1.01+ds/src/main_bp.cpp:603: tre ==> tree
data/phyx-1.01+ds/src/main_bp.cpp:604: mot ==> not
data/phyx-1.01+ds/src/main_mrca.cpp:159: nd ==> and, 2nd
data/phyx-1.01+ds/src/main_mrca.cpp:176: nd ==> and, 2nd
data/phyx-1.01+ds/src/main_mrca_cut.cpp:168: nd ==> and, 2nd
data/phyx-1.01+ds/src/main_mrca_name.cpp:186: nd ==> and, 2nd
data/phyx-1.01+ds/src/main_mrca_name.cpp:218: nd ==> and, 2nd
data/phyx-1.01+ds/src/main_seqgen.cpp:355: Diagnol ==> Diagonal
data/phyx-1.01+ds/src/main_strec.cpp:194: loos ==> loose, lose
data/phyx-1.01+ds/src/main_strec.cpp:198: loos ==> loose, lose
data/phyx-1.01+ds/src/main_strec.cpp:200: loos ==> loose, lose
data/phyx-1.01+ds/src/main_strec.cpp:295: loos ==> loose, lose
data/phyx-1.01+ds/src/main_strec.cpp:308: loos ==> loose, lose
data/phyx-1.01+ds/src/main_strec.cpp:316: loos ==> loose, lose
data/phyx-1.01+ds/src/main_strec.cpp:337: loos ==> loose, lose
data/phyx-1.01+ds/src/main_strec.cpp:366: loos ==> loose, lose
data/phyx-1.01+ds/src/main_strec.cpp:382: loos ==> loose, lose
data/phyx-1.01+ds/src/main_strec.cpp:431: loos ==> loose, lose
data/phyx-1.01+ds/src/main_strec.cpp:433: accomodate ==> accommodate
data/phyx-1.01+ds/src/main_strec.cpp:497: loos ==> loose, lose
data/phyx-1.01+ds/src/main_strec.cpp:498: loos ==> loose, lose
data/phyx-1.01+ds/src/main_strec.cpp:502: loos ==> loose, lose
data/phyx-1.01+ds/src/main_strec.cpp:520: loos ==> loose, lose
data/phyx-1.01+ds/src/main_strec.cpp:537: loos ==> loose, lose
data/phyx-1.01+ds/src/main_strec.cpp:559: loos ==> loose, lose
data/phyx-1.01+ds/src/main_strec.cpp:560: loos ==> loose, lose
data/phyx-1.01+ds/src/main_strec.cpp:576: loos ==> loose, lose
data/phyx-1.01+ds/src/main_strec.cpp:582: loos ==> loose, lose
data/phyx-1.01+ds/src/main_strec.cpp:610: loos ==> loose, lose
data/phyx-1.01+ds/src/main_strec.cpp:612: loos ==> loose, lose
data/phyx-1.01+ds/src/main_strec.cpp:619: loos ==> loose, lose
data/phyx-1.01+ds/src/main_strec.cpp:621: loos ==> loose, lose
data/phyx-1.01+ds/src/main_strec.cpp:630: loos ==> loose, lose
data/phyx-1.01+ds/src/main_strec.cpp:636: loos ==> loose, lose
data/phyx-1.01+ds/src/main_strec.cpp:668: loos ==> loose, lose
data/phyx-1.01+ds/src/main_strec.cpp:678: loos ==> loose, lose
data/phyx-1.01+ds/src/main_strec.cpp:686: loos ==> loose, lose
data/phyx-1.01+ds/src/main_strec.cpp:696: loos ==> loose, lose
data/phyx-1.01+ds/src/main_strec.cpp:701: loos ==> loose, lose
data/phyx-1.01+ds/src/main_strec.cpp:702: loos ==> loose, lose
data/phyx-1.01+ds/src/main_strec.cpp:709: loos ==> loose, lose
data/phyx-1.01+ds/src/main_strec.cpp:722: loos ==> loose, lose
data/phyx-1.01+ds/src/main_strec.cpp:731: loos ==> loose, lose
data/phyx-1.01+ds/src/main_strec.cpp:739: loos ==> loose, lose
data/phyx-1.01+ds/src/main_strec.cpp:747: loos ==> loose, lose
data/phyx-1.01+ds/src/main_strec.cpp:748: loos ==> loose, lose
data/phyx-1.01+ds/src/main_strec.cpp:754: loos ==> loose, lose
data/phyx-1.01+ds/src/main_strec.cpp:766: loos ==> loose, lose
data/phyx-1.01+ds/src/main_strec.cpp:774: loos ==> loose, lose
data/phyx-1.01+ds/src/main_strec.cpp:784: loos ==> loose, lose
data/phyx-1.01+ds/src/main_strec.cpp:790: loos ==> loose, lose
data/phyx-1.01+ds/src/main_strec.cpp:797: loos ==> loose, lose
data/phyx-1.01+ds/src/main_strec.cpp:801: loos ==> loose, lose
data/phyx-1.01+ds/src/main_strec.cpp:807: loos ==> loose, lose
data/phyx-1.01+ds/src/main_strec.cpp:813: loos ==> loose, lose
data/phyx-1.01+ds/src/main_strec.cpp:821: loos ==> loose, lose
data/phyx-1.01+ds/src/main_strec.cpp:824: loos ==> loose, lose
data/phyx-1.01+ds/src/main_strec.cpp:834: loos ==> loose, lose
data/phyx-1.01+ds/src/main_strec.cpp:839: loos ==> loose, lose
data/phyx-1.01+ds/src/main_strec.cpp:841: loos ==> loose, lose
data/phyx-1.01+ds/src/main_strec.cpp:846: loos ==> loose, lose
data/phyx-1.01+ds/src/main_strec.cpp:866: loos ==> loose, lose
data/phyx-1.01+ds/src/main_tcomb.cpp:178: childs ==> children, child's
data/phyx-1.01+ds/src/main_tcomb.cpp:179: childs ==> children, child's
data/phyx-1.01+ds/src/main_tcomb.cpp:182: childs ==> children, child's
data/phyx-1.01+ds/src/main_tcomb.cpp:195: childs ==> children, child's
data/phyx-1.01+ds/src/main_tcomb.cpp:217: nd ==> and, 2nd
data/phyx-1.01+ds/src/mataid.f:289: COO ==> COUP
data/phyx-1.01+ds/src/mataid.f:332: COO ==> COUP
data/phyx-1.01+ds/src/mataid.f:332: convertion ==> conversion
data/phyx-1.01+ds/src/mataid.f:335: convertion ==> conversion
data/phyx-1.01+ds/src/mataid.f:338: convertion ==> conversion
data/phyx-1.01+ds/src/mataid.f:784: COO ==> COUP
data/phyx-1.01+ds/src/mataid.f:827: COO ==> COUP
data/phyx-1.01+ds/src/mataid.f:827: convertion ==> conversion
data/phyx-1.01+ds/src/mataid.f:830: convertion ==> conversion
data/phyx-1.01+ds/src/mataid.f:833: convertion ==> conversion
data/phyx-1.01+ds/src/my_expokit.f:43: wich ==> which
data/phyx-1.01+ds/src/my_expokit.f:93: occured ==> occurred
data/phyx-1.01+ds/src/my_expokit.f:101: occured ==> occurred
data/phyx-1.01+ds/src/my_expokit.f:467: iput ==> input
data/phyx-1.01+ds/src/my_expokit.f:570: iput ==> input
data/phyx-1.01+ds/src/my_expokit.f:581: iput ==> input
data/phyx-1.01+ds/src/my_expokit.f:583: iput ==> input
data/phyx-1.01+ds/src/my_expokit.f:587: iput ==> input
data/phyx-1.01+ds/src/my_expokit.f:637: iput ==> input
data/phyx-1.01+ds/src/my_expokit.f:740: iput ==> input
data/phyx-1.01+ds/src/my_expokit.f:751: iput ==> input
data/phyx-1.01+ds/src/my_expokit.f:753: iput ==> input
data/phyx-1.01+ds/src/my_expokit.f:757: iput ==> input
data/phyx-1.01+ds/src/my_expokit.f:808: iput ==> input
data/phyx-1.01+ds/src/my_expokit.f:913: iput ==> input
data/phyx-1.01+ds/src/my_expokit.f:924: iput ==> input
data/phyx-1.01+ds/src/my_expokit.f:926: iput ==> input
data/phyx-1.01+ds/src/my_expokit.f:930: iput ==> input
data/phyx-1.01+ds/src/my_expokit.f:980: iput ==> input
data/phyx-1.01+ds/src/my_expokit.f:1085: iput ==> input
data/phyx-1.01+ds/src/my_expokit.f:1096: iput ==> input
data/phyx-1.01+ds/src/my_expokit.f:1098: iput ==> input
data/phyx-1.01+ds/src/my_expokit.f:1102: iput ==> input
data/phyx-1.01+ds/src/my_expokit.f:1677: wich ==> which
data/phyx-1.01+ds/src/my_expokit.f:1723: occured ==> occurred
data/phyx-1.01+ds/src/my_expokit.f:1731: occured ==> occurred
data/phyx-1.01+ds/src/my_expokit.f:2057: wich ==> which
data/phyx-1.01+ds/src/my_expokit.f:2104: occured ==> occurred
data/phyx-1.01+ds/src/my_expokit.f:2112: occured ==> occurred
data/phyx-1.01+ds/src/my_expokit.f:2441: wich ==> which
data/phyx-1.01+ds/src/my_expokit.f:2488: occured ==> occurred
data/phyx-1.01+ds/src/my_expokit.f:2496: occured ==> occurred
data/phyx-1.01+ds/src/my_expokit.f:2826: wich ==> which
data/phyx-1.01+ds/src/my_expokit.f:2873: occured ==> occurred
data/phyx-1.01+ds/src/my_expokit.f:2881: occured ==> occurred
data/phyx-1.01+ds/src/my_expokit.f:3211: wich ==> which
data/phyx-1.01+ds/src/my_expokit.f:3262: occured ==> occurred
data/phyx-1.01+ds/src/my_expokit.f:3270: occured ==> occurred
data/phyx-1.01+ds/src/my_expokit.f:3569: wich ==> which
data/phyx-1.01+ds/src/my_expokit.f:3620: occured ==> occurred
data/phyx-1.01+ds/src/my_expokit.f:3628: occured ==> occurred
data/phyx-1.01+ds/src/my_expokit.f:3935: wich ==> which
data/phyx-1.01+ds/src/my_expokit.f:3986: occured ==> occurred
data/phyx-1.01+ds/src/my_expokit.f:3994: occured ==> occurred
data/phyx-1.01+ds/src/my_expokit.f:4303: wich ==> which
data/phyx-1.01+ds/src/my_expokit.f:4354: occured ==> occurred
data/phyx-1.01+ds/src/my_expokit.f:4362: occured ==> occurred
data/phyx-1.01+ds/src/my_matexp.f:5: inout ==> input, in out
data/phyx-1.01+ds/src/my_matexp.f:6: inout ==> input, in out
data/phyx-1.01+ds/src/my_matexp.f:7: inout ==> input, in out
data/phyx-1.01+ds/src/my_matexp.f:8: inout ==> input, in out
data/phyx-1.01+ds/src/my_matexp.f:45: inout ==> input, in out
data/phyx-1.01+ds/src/my_matexp.f:46: inout ==> input, in out
data/phyx-1.01+ds/src/my_matexp.f:47: inout ==> input, in out
data/phyx-1.01+ds/src/my_matexp.f:48: inout ==> input, in out
data/phyx-1.01+ds/src/my_matexp.f:79: inout ==> input, in out
data/phyx-1.01+ds/src/my_matexp.f:80: inout ==> input, in out
data/phyx-1.01+ds/src/node.cpp:322: nd ==> and, 2nd
data/phyx-1.01+ds/src/node.cpp:343: nd ==> and, 2nd
data/phyx-1.01+ds/src/node.cpp:350: nd ==> and, 2nd
data/phyx-1.01+ds/src/node.cpp:364: nd ==> and, 2nd
data/phyx-1.01+ds/src/node.cpp:371: nd ==> and, 2nd
data/phyx-1.01+ds/src/node.cpp:382: nd ==> and, 2nd
data/phyx-1.01+ds/src/node.cpp:400: nd ==> and, 2nd
data/phyx-1.01+ds/src/rate_model.cpp:206: caluculate ==> calculate
data/phyx-1.01+ds/src/run_tests.py:20: tre ==> tree
data/phyx-1.01+ds/src/run_tests.py:24: nNumber ==> number
data/phyx-1.01+ds/src/run_tests.py:26: tre ==> tree
data/phyx-1.01+ds/src/run_tests.py:29: tre ==> tree
data/phyx-1.01+ds/src/run_tests.py:30: nd ==> and, 2nd
data/phyx-1.01+ds/src/run_tests.py:32: tre ==> tree
data/phyx-1.01+ds/src/run_tests.py:65: tre ==> tree
data/phyx-1.01+ds/src/run_tests.py:68: tre ==> tree
data/phyx-1.01+ds/src/run_tests.py:77: tre ==> tree
data/phyx-1.01+ds/src/run_tests.py:86: tre ==> tree
data/phyx-1.01+ds/src/run_tests.py:89: tre ==> tree
data/phyx-1.01+ds/src/run_tests.py:98: tre ==> tree
data/phyx-1.01+ds/src/run_tests.py:101: tre ==> tree
data/phyx-1.01+ds/src/run_tests.py:104: tre ==> tree
data/phyx-1.01+ds/src/run_tests.py:107: tre ==> tree
data/phyx-1.01+ds/src/run_tests.py:113: tre ==> tree
data/phyx-1.01+ds/src/run_tests.py:125: tre ==> tree
data/phyx-1.01+ds/src/run_tests.py:131: tre ==> tree
data/phyx-1.01+ds/src/run_tests.py:140: tre ==> tree
data/phyx-1.01+ds/src/state_reconstructor.cpp:124: nd ==> and, 2nd
data/phyx-1.01+ds/src/state_reconstructor.cpp:169: nd ==> and, 2nd
data/phyx-1.01+ds/src/state_reconstructor_simple.cpp:56: nd ==> and, 2nd
data/phyx-1.01+ds/src/state_reconstructor_simple.cpp:63: nd ==> and, 2nd
data/phyx-1.01+ds/src/state_reconstructor_simple.cpp:66: nd ==> and, 2nd
data/phyx-1.01+ds/src/tree_utils.cpp:454: nd ==> and, 2nd
data/phyx-1.01+ds/src/tree_utils.cpp:455: nd ==> and, 2nd
data/phyx-1.01+ds/src/tree_utils.cpp:467: nd ==> and, 2nd
data/phyx-1.01+ds/src/tree_utils.cpp:468: nd ==> and, 2nd
data/phyx-1.01+ds/src/tree_utils.cpp:546: nd ==> and, 2nd
data/phyx-1.01+ds/src/tree_utils.cpp:547: nd ==> and, 2nd
data/phyx-1.01+ds/src/utils.cpp:244: matA ==> meta, mater
data/phyx-1.01+ds/src/utils.cpp:248: matA ==> meta, mater
data/phyx-1.01+ds/src/utils.cpp:249: matA ==> meta, mater
data/phyx-1.01+ds/src/utils.cpp:256: matA ==> meta, mater
data/phyx-1.01+ds/src/utils.cpp:257: matA ==> meta, mater
data/phyx-1.01+ds/src/utils.cpp:269: matA ==> meta, mater
data/phyx-1.01+ds/src/utils.cpp:273: matA ==> meta, mater
data/phyx-1.01+ds/src/utils.cpp:274: matA ==> meta, mater
data/phyx-1.01+ds/src/utils.cpp:281: matA ==> meta, mater
data/phyx-1.01+ds/src/utils.cpp:282: matA ==> meta, mater
data/phyx-1.01+ds/src/utils.cpp:286: matA ==> meta, mater
data/phyx-1.01+ds/src/utils.cpp:287: matA ==> meta, mater
data/phyx-1.01+ds/src/utils.cpp:293: matA ==> meta, mater
data/phyx-1.01+ds/src/utils.cpp:294: matA ==> meta, mater
data/phyx-1.01+ds/src/utils.h:62: matA ==> meta, mater
data/phyx-1.01+ds/src/utils.h:63: matA ==> meta, mater
data/phyx-1.01+ds/src/vcf_reader.cpp:50: preceeding ==> preceding, proceeding
data/phyx-1.01+ds/src/TEST/test.fastq:936: BA ==> BY, BE
data/phyx-1.01+ds/src/TEST/test.fastq:1424: ADDD ==> ADD
data/phyx-1.01+ds/src/TEST/test.fastq:1612: BA ==> BY, BE
data/phyx-1.01+ds/src/TEST/test.fastq:1680: BA ==> BY, BE
data/phyx-1.01+ds/src/TEST/test.fastq:1728: BA ==> BY, BE
data/phyx-1.01+ds/src/TEST/test.fastq:1748: AFE ==> SAFE
data/phyx-1.01+ds/src/TEST/test.fastq:1756: BA ==> BY, BE
data/phyx-1.01+ds/src/TEST/test.fastq:1976: BA ==> BY, BE
data/phyx-1.01+ds/src/TEST/test.fastq:2036: BA ==> BY, BE
data/phyx-1.01+ds/src/TEST/test.fastq:2380: BA ==> BY, BE
data/phyx-1.01+ds/src/TEST/test.fastq:2712: BA ==> BY, BE
data/phyx-1.01+ds/src/TEST/test.fastq:2968: BA ==> BY, BE
data/phyx-1.01+ds/debian/tests/run-unit-test:3: Considere ==> Considered
data/phyx-1.01+ds/debian/tests/run-unit-test:23: tre ==> tree
data/phyx-1.01+ds/debian/tests/run-unit-test:31: tre ==> tree
data/phyx-1.01+ds/debian/tests/run-unit-test:39: tre ==> tree
data/phyx-1.01+ds/debian/tests/run-unit-test:49: tre ==> tree
data/phyx-1.01+ds/debian/tests/run-unit-test:51: tre ==> tree
data/phyx-1.01+ds/debian/tests/run-unit-test:67: tre ==> tree
data/phyx-1.01+ds/debian/tests/run-unit-test:71: tre ==> tree
data/phyx-1.01+ds/debian/tests/run-unit-test:73: tre ==> tree
data/phyx-1.01+ds/debian/tests/run-unit-test:81: tre ==> tree
data/phyx-1.01+ds/debian/tests/run-unit-test:87: tre ==> tree