data/pplacer-1.1~alpha19/CHANGELOG:9: ambigious ==> ambiguous
data/pplacer-1.1~alpha19/CHANGELOG:92: SOM ==> SOME
data/pplacer-1.1~alpha19/cdd_src/cdd.ml:1: BA ==> BY, BE
data/pplacer-1.1~alpha19/cdd_src/cdd.ml:2: BA ==> BY, BE
data/pplacer-1.1~alpha19/cdd_src/cdd.ml:4: BA ==> BY, BE
data/pplacer-1.1~alpha19/cdd_src/cdd.ml:4: BA ==> BY, BE
data/pplacer-1.1~alpha19/cdd_src/cdd.ml:8: ba ==> by, be
data/pplacer-1.1~alpha19/cdd_src/cdd.ml:8: BA ==> BY, BE
data/pplacer-1.1~alpha19/cdd_src/cdd.ml:8: BA ==> BY, BE
data/pplacer-1.1~alpha19/cdd_src/cdd.ml:9: ba ==> by, be
data/pplacer-1.1~alpha19/cdd_src/cdd.ml:11: ba ==> by, be
data/pplacer-1.1~alpha19/cdd_src/cdd.ml:11: ba ==> by, be
data/pplacer-1.1~alpha19/cdd_src/cdd.ml:13: ba ==> by, be
data/pplacer-1.1~alpha19/cdd_src/cddcore.c:24: TempRay ==> temporary
data/pplacer-1.1~alpha19/cdd_src/cddcore.c:54: TempRay ==> temporary
data/pplacer-1.1~alpha19/cdd_src/cddcore.c:55: TempRay ==> temporary
data/pplacer-1.1~alpha19/cdd_src/cddcore.c:56: TempRay ==> temporary
data/pplacer-1.1~alpha19/cdd_src/cddcore.c:56: TempRay ==> temporary
data/pplacer-1.1~alpha19/cdd_src/cddcore.c:60: TempRay ==> temporary
data/pplacer-1.1~alpha19/cdd_src/cddcore.c:80: ARay ==> array
data/pplacer-1.1~alpha19/cdd_src/cddcore.c:217: ARay ==> array
data/pplacer-1.1~alpha19/cdd_src/cddcore.c:226: ARay ==> array
data/pplacer-1.1~alpha19/cdd_src/cddcore.c:269: ARay ==> array
data/pplacer-1.1~alpha19/cdd_src/cddcore.c:288: TempRay ==> temporary
data/pplacer-1.1~alpha19/cdd_src/cddcore.c:373: TempRay ==> temporary
data/pplacer-1.1~alpha19/cdd_src/cddcore.c:374: TempRay ==> temporary
data/pplacer-1.1~alpha19/cdd_src/cddcore.c:375: TempRay ==> temporary
data/pplacer-1.1~alpha19/cdd_src/cddcore.c:375: TempRay ==> temporary
data/pplacer-1.1~alpha19/cdd_src/cddcore.c:382: TempRay ==> temporary
data/pplacer-1.1~alpha19/cdd_src/cddcore.c:505: ARay ==> array
data/pplacer-1.1~alpha19/cdd_src/cddcore.c:517: ARay ==> array
data/pplacer-1.1~alpha19/cdd_src/cddcore.c:1132: ARay ==> array
data/pplacer-1.1~alpha19/cdd_src/cddcore.c:1178: ARay ==> array
data/pplacer-1.1~alpha19/cdd_src/cddcore.c:1283: ARay ==> array
data/pplacer-1.1~alpha19/cdd_src/cddcore.c:1284: ARay ==> array
data/pplacer-1.1~alpha19/cdd_src/cddcore.c:1298: ARay ==> array
data/pplacer-1.1~alpha19/cdd_src/cddcore.c:1299: ARay ==> array
data/pplacer-1.1~alpha19/cdd_src/cddcore.c:1349: inbetween ==> between, in between
data/pplacer-1.1~alpha19/cdd_src/cddcore.c:1350: inbetween ==> between, in between
data/pplacer-1.1~alpha19/cdd_src/cddcore.c:1477: ARay ==> array
data/pplacer-1.1~alpha19/cdd_src/cddcore.c:1480: Sicne ==> Since
data/pplacer-1.1~alpha19/cdd_src/cddcore.c:1485: ARay ==> array
data/pplacer-1.1~alpha19/cdd_src/cddcore.c:1503: ARay ==> array
data/pplacer-1.1~alpha19/cdd_src/cddcore.c:1504: ARay ==> array
data/pplacer-1.1~alpha19/cdd_src/cddcore.c:1561: ARay ==> array
data/pplacer-1.1~alpha19/cdd_src/cddlib.c:317: imcomplete ==> incomplete
data/pplacer-1.1~alpha19/cdd_src/cddlp.c:1133: spacified ==> specified
data/pplacer-1.1~alpha19/cdd_src/cddlp.c:1236: curruent ==> current
data/pplacer-1.1~alpha19/cdd_src/cddlp.c:1409: arithmetics ==> arithmetic
data/pplacer-1.1~alpha19/cdd_src/cddlp.c:1418: indeces ==> indices
data/pplacer-1.1~alpha19/cdd_src/cddlp.c:1589: arithmetics ==> arithmetic
data/pplacer-1.1~alpha19/cdd_src/cddlp.c:1598: indeces ==> indices
data/pplacer-1.1~alpha19/cdd_src/cddlp.c:1604: arithmetics ==> arithmetic
data/pplacer-1.1~alpha19/cdd_src/cddlp.c:1642: arithmetics ==> arithmetic
data/pplacer-1.1~alpha19/cdd_src/cddlp.c:2224: degerate ==> degenerate
data/pplacer-1.1~alpha19/cdd_src/cddlp.c:2326: degerate ==> degenerate
data/pplacer-1.1~alpha19/cdd_src/cddlp.c:2377: bouding ==> bounding
data/pplacer-1.1~alpha19/cdd_src/cddlp.c:2394: degerate ==> degenerate
data/pplacer-1.1~alpha19/cdd_src/cddlp.c:3124: constains ==> constrains, contains
data/pplacer-1.1~alpha19/cdd_src/cddlp.c:3383: checkes ==> checks
data/pplacer-1.1~alpha19/cdd_src/cddlp.c:3383: satifies ==> satisfies
data/pplacer-1.1~alpha19/cdd_src/cddlp.c:3384: contraints ==> constraints
data/pplacer-1.1~alpha19/cdd_src/cddlp.c:3417: checkes ==> checks
data/pplacer-1.1~alpha19/cdd_src/cddlp.c:3417: satifies ==> satisfies
data/pplacer-1.1~alpha19/cdd_src/cddlp.c:3418: contraints ==> constraints
data/pplacer-1.1~alpha19/cdd_src/cddlp.c:3456: interprete ==> interpret
data/pplacer-1.1~alpha19/cdd_src/cddlp.c:3587: arithmetics ==> arithmetic
data/pplacer-1.1~alpha19/cdd_src/cddlp.c:3672: speficied ==> specified
data/pplacer-1.1~alpha19/cdd_src/cddtypes.h:58: ARay ==> array
data/pplacer-1.1~alpha19/cdd_src/pplacer_cdd.c:189: ouptut ==> output
data/pplacer-1.1~alpha19/cdd_src/cddio.c:415: origial ==> original
data/pplacer-1.1~alpha19/cdd_src/cddio.c:918: nNumber ==> number
data/pplacer-1.1~alpha19/common_src/subcommand.ml:2: assocated ==> associated
data/pplacer-1.1~alpha19/docs/details/guppy.rst:34: OTU ==> OUT
data/pplacer-1.1~alpha19/docs/details/guppy.rst:172: tre ==> tree
data/pplacer-1.1~alpha19/docs/details/guppy.rst:228: fo ==> of, for
data/pplacer-1.1~alpha19/docs/details/guppy_classify.rst:73: intialized ==> initialized
data/pplacer-1.1~alpha19/docs/details/guppy_epca.rst:16: SOM ==> SOME
data/pplacer-1.1~alpha19/docs/details/guppy_epca.rst:20: som ==> some
data/pplacer-1.1~alpha19/docs/details/guppy_epca.rst:23: som ==> some
data/pplacer-1.1~alpha19/docs/details/guppy_kr.rst:8: accomodate ==> accommodate
data/pplacer-1.1~alpha19/docs/details/guppy_lpca.rst:18: SOM ==> SOME
data/pplacer-1.1~alpha19/docs/details/guppy_lpca.rst:22: som ==> some
data/pplacer-1.1~alpha19/docs/details/guppy_lpca.rst:25: som ==> some
data/pplacer-1.1~alpha19/docs/details/pplacer.rst:267: tre ==> tree
data/pplacer-1.1~alpha19/docs/details/pplacer.rst:288: tre ==> tree
data/pplacer-1.1~alpha19/docs/details/pplacer.rst:297: tre ==> tree
data/pplacer-1.1~alpha19/docs/details/pplacer.rst:309: accomodates ==> accommodates
data/pplacer-1.1~alpha19/docs/details/pplacer.rst:386: ba ==> by, be
data/pplacer-1.1~alpha19/docs/details/pplacer.rst:387: ba ==> by, be
data/pplacer-1.1~alpha19/docs/details/pplacer.rst:388: ba ==> by, be
data/pplacer-1.1~alpha19/docs/details/pplacer.rst:388: ba ==> by, be
data/pplacer-1.1~alpha19/docs/details/rppr.rst:51: fo ==> of, for
data/pplacer-1.1~alpha19/docs/details/rppr_prep_db.rst:5: pacakge ==> package
data/pplacer-1.1~alpha19/pam_src/pam_solver.ml:3: BA ==> BY, BE
data/pplacer-1.1~alpha19/pam_src/pam_solver.ml:6: BA ==> BY, BE
data/pplacer-1.1~alpha19/pam_src/pam_solver.ml:6: BA ==> BY, BE
data/pplacer-1.1~alpha19/pdprune_src/t-pd.ml:42: tre ==> tree
data/pplacer-1.1~alpha19/pplacer_src/barycenter.ml:23: numer ==> number
data/pplacer-1.1~alpha19/pplacer_src/biom.ml:33: OTU ==> OUT
data/pplacer-1.1~alpha19/pplacer_src/biom.ml:34: OTU ==> OUT
data/pplacer-1.1~alpha19/pplacer_src/biom.ml:47: OTU ==> OUT
data/pplacer-1.1~alpha19/pplacer_src/classif_map.ml:17: appopriate ==> appropriate
data/pplacer-1.1~alpha19/pplacer_src/core.ml:175: homogenous ==> homogeneous
data/pplacer-1.1~alpha19/pplacer_src/diagd.ml:4: speficied ==> specified
data/pplacer-1.1~alpha19/pplacer_src/gmix_model.ml:60: BA ==> BY, BE
data/pplacer-1.1~alpha19/pplacer_src/gmix_model.ml:60: BA ==> BY, BE
data/pplacer-1.1~alpha19/pplacer_src/gmix_model.ml:277: BA ==> BY, BE
data/pplacer-1.1~alpha19/pplacer_src/gmix_model.ml:277: BA ==> BY, BE
data/pplacer-1.1~alpha19/pplacer_src/gstar_support.ml:3: BA ==> BY, BE
data/pplacer-1.1~alpha19/pplacer_src/gstar_support.ml:4: BA ==> BY, BE
data/pplacer-1.1~alpha19/pplacer_src/gstar_support.ml:5: BA ==> BY, BE
data/pplacer-1.1~alpha19/pplacer_src/gstar_support.ml:6: BA ==> BY, BE
data/pplacer-1.1~alpha19/pplacer_src/gstar_support.ml:7: BA ==> BY, BE
data/pplacer-1.1~alpha19/pplacer_src/gstar_support.ml:16: BA ==> BY, BE
data/pplacer-1.1~alpha19/pplacer_src/gstar_support.ml:16: BA ==> BY, BE
data/pplacer-1.1~alpha19/pplacer_src/gstar_support.ml:103: BA ==> BY, BE
data/pplacer-1.1~alpha19/pplacer_src/gstar_support.ml:103: BA ==> BY, BE
data/pplacer-1.1~alpha19/pplacer_src/gstar_support.ml:107: BA ==> BY, BE
data/pplacer-1.1~alpha19/pplacer_src/gstar_support.ml:107: BA ==> BY, BE
data/pplacer-1.1~alpha19/pplacer_src/gtree.ml:1: stucture ==> structure
data/pplacer-1.1~alpha19/pplacer_src/gtree.ml:160: ba ==> by, be
data/pplacer-1.1~alpha19/pplacer_src/gtree.ml:162: ba ==> by, be
data/pplacer-1.1~alpha19/pplacer_src/guppy_epca.ml:54: som ==> some
data/pplacer-1.1~alpha19/pplacer_src/guppy_epca.ml:54: som ==> some
data/pplacer-1.1~alpha19/pplacer_src/guppy_epca.ml:58: som ==> some
data/pplacer-1.1~alpha19/pplacer_src/guppy_epca.ml:58: som ==> some
data/pplacer-1.1~alpha19/pplacer_src/guppy_epca.ml:105: som ==> some
data/pplacer-1.1~alpha19/pplacer_src/guppy_epca.ml:107: Som ==> Some
data/pplacer-1.1~alpha19/pplacer_src/guppy_epca.ml:107: som ==> some
data/pplacer-1.1~alpha19/pplacer_src/guppy_epca.ml:108: som ==> some
data/pplacer-1.1~alpha19/pplacer_src/guppy_epca.ml:110: Som ==> Some
data/pplacer-1.1~alpha19/pplacer_src/guppy_lpca.ml:96: som ==> some
data/pplacer-1.1~alpha19/pplacer_src/guppy_lpca.ml:96: som ==> some
data/pplacer-1.1~alpha19/pplacer_src/guppy_lpca.ml:100: som ==> some
data/pplacer-1.1~alpha19/pplacer_src/guppy_lpca.ml:100: som ==> some
data/pplacer-1.1~alpha19/pplacer_src/guppy_lpca.ml:141: som ==> some
data/pplacer-1.1~alpha19/pplacer_src/guppy_lpca.ml:143: Som ==> Some
data/pplacer-1.1~alpha19/pplacer_src/guppy_lpca.ml:143: som ==> some
data/pplacer-1.1~alpha19/pplacer_src/guppy_lpca.ml:144: som ==> some
data/pplacer-1.1~alpha19/pplacer_src/guppy_lpca.ml:146: Som ==> Some
data/pplacer-1.1~alpha19/pplacer_src/guppy_pca.ml:19: som ==> some
data/pplacer-1.1~alpha19/pplacer_src/guppy_pca.ml:36: som ==> some
data/pplacer-1.1~alpha19/pplacer_src/kr_distance.ml:1: agorithm ==> algorithm
data/pplacer-1.1~alpha19/pplacer_src/kr_distance.ml:181: Pres ==> Press
data/pplacer-1.1~alpha19/pplacer_src/linear.ml:4: BA ==> BY, BE
data/pplacer-1.1~alpha19/pplacer_src/linear.ml:5: BA ==> BY, BE
data/pplacer-1.1~alpha19/pplacer_src/linear.ml:6: BA ==> BY, BE
data/pplacer-1.1~alpha19/pplacer_src/linear.ml:8: BA ==> BY, BE
data/pplacer-1.1~alpha19/pplacer_src/linear.ml:8: BA ==> BY, BE
data/pplacer-1.1~alpha19/pplacer_src/mass_map.ml:2: Pres ==> Press
data/pplacer-1.1~alpha19/pplacer_src/minimization.ml:56: SOM ==> SOME
data/pplacer-1.1~alpha19/pplacer_src/mokaphy_common.ml:19: pres ==> press
data/pplacer-1.1~alpha19/pplacer_src/nbc.ml:5: BA ==> BY, BE
data/pplacer-1.1~alpha19/pplacer_src/nbc.ml:6: BA ==> BY, BE
data/pplacer-1.1~alpha19/pplacer_src/nbc.ml:7: BA ==> BY, BE
data/pplacer-1.1~alpha19/pplacer_src/nbc.ml:105: BA ==> BY, BE
data/pplacer-1.1~alpha19/pplacer_src/nbc.ml:121: BA ==> BY, BE
data/pplacer-1.1~alpha19/pplacer_src/nbc.ml:183: BA ==> BY, BE
data/pplacer-1.1~alpha19/pplacer_src/nbc.ml:183: BA ==> BY, BE
data/pplacer-1.1~alpha19/pplacer_src/nbc.ml:200: BA ==> BY, BE
data/pplacer-1.1~alpha19/pplacer_src/nbc.ml:201: BA ==> BY, BE
data/pplacer-1.1~alpha19/pplacer_src/nbc.ml:215: BA ==> BY, BE
data/pplacer-1.1~alpha19/pplacer_src/nbc.ml:216: BA ==> BY, BE
data/pplacer-1.1~alpha19/pplacer_src/nbc.ml:240: BA ==> BY, BE
data/pplacer-1.1~alpha19/pplacer_src/nbc.ml:240: BA ==> BY, BE
data/pplacer-1.1~alpha19/pplacer_src/nbc.ml:271: BA ==> BY, BE
data/pplacer-1.1~alpha19/pplacer_src/nbc.ml:272: BA ==> BY, BE
data/pplacer-1.1~alpha19/pplacer_src/newick_gtree.ml:175: ba ==> by, be
data/pplacer-1.1~alpha19/pplacer_src/newick_gtree.ml:177: ba ==> by, be
data/pplacer-1.1~alpha19/pplacer_src/placerun_io.ml:136: tre ==> tree
data/pplacer-1.1~alpha19/pplacer_src/refpkg.ml:210: ans ==> and
data/pplacer-1.1~alpha19/pplacer_src/refpkg.ml:220: ans ==> and
data/pplacer-1.1~alpha19/pplacer_src/refpkg.ml:221: ans ==> and
data/pplacer-1.1~alpha19/pplacer_src/rppr_convexify.ml:88: tre ==> tree
data/pplacer-1.1~alpha19/pplacer_src/rppr_min_adcl_tree.ml:20: tre ==> tree
data/pplacer-1.1~alpha19/pplacer_src/rppr_prepsim.ml:76: tre ==> tree
data/pplacer-1.1~alpha19/pplacer_src/rppr_prepsim.ml:87: tre ==> tree
data/pplacer-1.1~alpha19/pplacer_src/som.ml:2: Minimzation ==> Minimization
data/pplacer-1.1~alpha19/pplacer_src/som.ml:63: SOM ==> SOME
data/pplacer-1.1~alpha19/pplacer_src/som.ml:94: tranform ==> transform
data/pplacer-1.1~alpha19/pplacer_src/som.ml:160: roation ==> rotation
data/pplacer-1.1~alpha19/pplacer_src/som.ml:175: SOM ==> SOME
data/pplacer-1.1~alpha19/pplacer_src/som.ml:187: roated ==> rotated
data/pplacer-1.1~alpha19/pplacer_src/tax_map.ml:25: Propogate ==> Propagate
data/pplacer-1.1~alpha19/pplacer_src/tensor.ml:1: BA ==> BY, BE
data/pplacer-1.1~alpha19/pplacer_src/tensor.ml:2: BA ==> BY, BE
data/pplacer-1.1~alpha19/pplacer_src/tensor.ml:4: BA ==> BY, BE
data/pplacer-1.1~alpha19/pplacer_src/tensor.ml:4: BA ==> BY, BE
data/pplacer-1.1~alpha19/pplacer_src/tensor.ml:4: BA ==> BY, BE
data/pplacer-1.1~alpha19/pplacer_src/tensor.ml:10: BA ==> BY, BE
data/pplacer-1.1~alpha19/pplacer_src/tensor.ml:10: BA ==> BY, BE
data/pplacer-1.1~alpha19/pplacer_src/tensor.ml:14: BA ==> BY, BE
data/pplacer-1.1~alpha19/pplacer_src/tensor.ml:14: BA ==> BY, BE
data/pplacer-1.1~alpha19/pplacer_src/visualization.ml:15: tre ==> tree
data/pplacer-1.1~alpha19/pplacer_src/guppy_squash.ml:4: pres ==> press
data/pplacer-1.1~alpha19/pplacer_src/guppy_squash.ml:14: tre ==> tree
data/pplacer-1.1~alpha19/pplacer_src/guppy_squash.ml:220: tre ==> tree
data/pplacer-1.1~alpha19/pplacer_src/gcat_model.ml:106: BA ==> BY, BE
data/pplacer-1.1~alpha19/pplacer_src/gcat_model.ml:106: BA ==> BY, BE
data/pplacer-1.1~alpha19/pplacer_src/gcat_model.ml:303: BA ==> BY, BE
data/pplacer-1.1~alpha19/pplacer_src/gcat_model.ml:303: BA ==> BY, BE
data/pplacer-1.1~alpha19/scripts/multiclass_concat.py:251: uneeded ==> unneeded, needed
data/pplacer-1.1~alpha19/tests/data/heat/my.simple.refpkg/CONTENTS.json:3: tre ==> tree
data/pplacer-1.1~alpha19/tests/data/simple.refpkg/CONTENTS.json:4: tre ==> tree
data/pplacer-1.1~alpha19/tests/data/tiny.refpkg/CONTENTS.json:3: tre ==> tree
data/pplacer-1.1~alpha19/tests/guppy/test_all_guppy.ml:8: som ==> some
data/pplacer-1.1~alpha19/tests/guppy/test_som.ml:2: Som ==> Some
data/pplacer-1.1~alpha19/tests/guppy/test_som.ml:36: Som ==> Some
data/pplacer-1.1~alpha19/tests/guppy/test_som.ml:45: som ==> some
data/pplacer-1.1~alpha19/tests/guppy/test_som.ml:50: som ==> some
data/pplacer-1.1~alpha19/tests/guppy/test_som.ml:74: som ==> some
data/pplacer-1.1~alpha19/tests/guppy/test_som.ml:75: som ==> some
data/pplacer-1.1~alpha19/tests/guppy/test_som.ml:76: som ==> some
data/pplacer-1.1~alpha19/tests/guppy/test_som.ml:77: som ==> some
data/pplacer-1.1~alpha19/tests/guppy/test_som.ml:78: som ==> some
data/pplacer-1.1~alpha19/debian/patches/ocaml_bytes:167: tre ==> tree
data/pplacer-1.1~alpha19/debian/patches/ocaml_bytes:169: tre ==> tree
data/pplacer-1.1~alpha19/debian/patches/spelling.patch:11: cheking ==> checking
data/pplacer-1.1~alpha19/.pc/ocaml_stdlib/pplacer_src/guppy_squash.ml:4: pres ==> press
data/pplacer-1.1~alpha19/.pc/ocaml_stdlib/pplacer_src/guppy_squash.ml:14: tre ==> tree
data/pplacer-1.1~alpha19/.pc/ocaml_stdlib/pplacer_src/guppy_squash.ml:220: tre ==> tree
data/pplacer-1.1~alpha19/.pc/ocaml_bytes/pplacer_src/guppy_squash.ml:4: pres ==> press
data/pplacer-1.1~alpha19/.pc/ocaml_bytes/pplacer_src/guppy_squash.ml:14: tre ==> tree
data/pplacer-1.1~alpha19/.pc/ocaml_bytes/pplacer_src/guppy_squash.ml:220: tre ==> tree
data/pplacer-1.1~alpha19/.pc/ocaml_bytes/pam_src/pam_solver.ml:3: BA ==> BY, BE
data/pplacer-1.1~alpha19/.pc/ocaml_bytes/pam_src/pam_solver.ml:6: BA ==> BY, BE
data/pplacer-1.1~alpha19/.pc/ocaml_bytes/pam_src/pam_solver.ml:6: BA ==> BY, BE
data/pplacer-1.1~alpha19/.pc/spelling.patch/cdd_src/cddio.c:415: origial ==> original
data/pplacer-1.1~alpha19/.pc/spelling.patch/cdd_src/cddio.c:918: nNumber ==> number
data/pplacer-1.1~alpha19/.pc/spelling.patch/cdd_src/cddio.c:1560: cheking ==> checking
data/pplacer-1.1~alpha19/.pc/ocaml-batteries.patch/pplacer_src/gcat_model.ml:106: BA ==> BY, BE
data/pplacer-1.1~alpha19/.pc/ocaml-batteries.patch/pplacer_src/gcat_model.ml:106: BA ==> BY, BE
data/pplacer-1.1~alpha19/.pc/ocaml-batteries.patch/pplacer_src/gcat_model.ml:303: BA ==> BY, BE
data/pplacer-1.1~alpha19/.pc/ocaml-batteries.patch/pplacer_src/gcat_model.ml:303: BA ==> BY, BE