data/prime-phylo-1.0.11/TODO:26: conection ==> connection
data/prime-phylo-1.0.11/TODO:34: distribtuion ==> distribution
data/prime-phylo-1.0.11/TODO:45: subsitution ==> substitution
data/prime-phylo-1.0.11/TODO:53: charater ==> character
data/prime-phylo-1.0.11/TODO:54: varible ==> variable
data/prime-phylo-1.0.11/TODO:352: euclidian ==> euclidean
data/prime-phylo-1.0.11/README_prog_options.txt:44: descibed ==> described
data/prime-phylo-1.0.11/TODO.txt:6: implented ==> implemented
data/prime-phylo-1.0.11/src/cxx/CMakeLists.txt:182: som ==> some
data/prime-phylo-1.0.11/src/cxx/libraries/prime/HybridTreeIO.cc:104: hasNT ==> hasn't
data/prime-phylo-1.0.11/src/cxx/libraries/prime/HybridTreeIO.cc:133: hasNT ==> hasn't
data/prime-phylo-1.0.11/src/cxx/libraries/prime/HybridTreeIO.cc:192: hasNT ==> hasn't
data/prime-phylo-1.0.11/src/cxx/libraries/prime/HybridTreeIO.cc:220: hasNT ==> hasn't
data/prime-phylo-1.0.11/src/cxx/libraries/prime/HybridTreeIO.cc:294: hasNT ==> hasn't
data/prime-phylo-1.0.11/src/cxx/libraries/prime/HybridBranchSwapping.cc:78: orginal ==> original
data/prime-phylo-1.0.11/src/cxx/libraries/prime/HybridBranchSwapping.cc:85: betwen ==> between
data/prime-phylo-1.0.11/src/cxx/libraries/prime/EnumerateReconciliationModel.cc:115: alos ==> also
data/prime-phylo-1.0.11/src/cxx/libraries/prime/EnumerateReconciliationModel.cc:505: alos ==> also
data/prime-phylo-1.0.11/src/cxx/libraries/prime/StdMCMCModel.cc:26: fro ==> for, from
data/prime-phylo-1.0.11/src/cxx/libraries/prime/StdMCMCModel.cc:431: obejct ==> object
data/prime-phylo-1.0.11/src/cxx/libraries/prime/StdMCMCModel.cc:450: nd ==> and, 2nd
data/prime-phylo-1.0.11/src/cxx/libraries/prime/StdMCMCModel.cc:456: nd ==> and, 2nd
data/prime-phylo-1.0.11/src/cxx/libraries/prime/StdMCMCModel.cc:459: nd ==> and, 2nd
data/prime-phylo-1.0.11/src/cxx/libraries/prime/StdMCMCModel.cc:490: nd ==> and, 2nd
data/prime-phylo-1.0.11/src/cxx/libraries/prime/StdMCMCModel.cc:498: nd ==> and, 2nd
data/prime-phylo-1.0.11/src/cxx/libraries/prime/StdMCMCModel.cc:499: nd ==> and, 2nd
data/prime-phylo-1.0.11/src/cxx/libraries/prime/StdMCMCModel.cc:504: nd ==> and, 2nd
data/prime-phylo-1.0.11/src/cxx/libraries/prime/StdMCMCModel.cc:505: nd ==> and, 2nd
data/prime-phylo-1.0.11/src/cxx/libraries/prime/StdMCMCModel.cc:506: nd ==> and, 2nd
data/prime-phylo-1.0.11/src/cxx/libraries/prime/SubstitutionModel.cc:149: funciton ==> function
data/prime-phylo-1.0.11/src/cxx/libraries/prime/FastCacheSubstitutionModel.hh:183: caluculated ==> calculated
data/prime-phylo-1.0.11/src/cxx/libraries/prime/SeqIO.cc:66: ststr ==> strstr
data/prime-phylo-1.0.11/src/cxx/libraries/prime/SeqIO.cc:68: ststr ==> strstr
data/prime-phylo-1.0.11/src/cxx/libraries/prime/Density2P_common.hh:111: Attribues ==> Attributes
data/prime-phylo-1.0.11/src/cxx/libraries/prime/Tree.cc:348: exisiting ==> existing
data/prime-phylo-1.0.11/src/cxx/libraries/prime/SequenceGenerator.cc:57: Assigment ==> Assignment
data/prime-phylo-1.0.11/src/cxx/libraries/prime/LA_Matrix.hh:130: vill ==> will
data/prime-phylo-1.0.11/src/cxx/libraries/prime/SpeciesTreeMCMC.hh:14: preceeding ==> preceding, proceeding
data/prime-phylo-1.0.11/src/cxx/libraries/prime/DiscreteGamma.cc:45: Auxilliary ==> Auxiliary
data/prime-phylo-1.0.11/src/cxx/libraries/prime/DiscreteGamma.cc:160: metod ==> method
data/prime-phylo-1.0.11/src/cxx/libraries/prime/DiscreteGamma.cc:191: serie ==> series
data/prime-phylo-1.0.11/src/cxx/libraries/prime/DiscreteGamma.cc:443: rquired ==> required
data/prime-phylo-1.0.11/src/cxx/libraries/prime/DiscreteGamma.cc:455: waht ==> what
data/prime-phylo-1.0.11/src/cxx/libraries/prime/Node.cc:611: explicitely ==> explicitly
data/prime-phylo-1.0.11/src/cxx/libraries/prime/NHX.l:8: accomodate ==> accommodate
data/prime-phylo-1.0.11/src/cxx/libraries/prime/HybridTreeInputOutput.hh:79: detemines ==> determines
data/prime-phylo-1.0.11/src/cxx/libraries/prime/DPLengthFactorizer.cc:41: constuctor ==> constructor
data/prime-phylo-1.0.11/src/cxx/libraries/prime/BranchSwapping.cc:393: froms ==> forms
data/prime-phylo-1.0.11/src/cxx/libraries/prime/DiscTree.hh:29: correponding ==> corresponding
data/prime-phylo-1.0.11/src/cxx/libraries/prime/HybridTreeInputOutput.cc:204: hasNT ==> hasn't
data/prime-phylo-1.0.11/src/cxx/libraries/prime/StdMCMCModel.hh:29: fro ==> for, from
data/prime-phylo-1.0.11/src/cxx/libraries/prime/StdMCMCModel.hh:203: obejct ==> object
data/prime-phylo-1.0.11/src/cxx/libraries/prime/EdgeDiscGSR.cc:130: intervall ==> interval
data/prime-phylo-1.0.11/src/cxx/libraries/prime/EdgeDiscGSR.cc:160: intervall ==> interval
data/prime-phylo-1.0.11/src/cxx/libraries/prime/EdgeDiscGSR.cc:499: aboves ==> above
data/prime-phylo-1.0.11/src/cxx/libraries/prime/EdgeDiscGSR.cc:685: Initalize ==> Initialize
data/prime-phylo-1.0.11/src/cxx/libraries/prime/LambdaMap.hh:69: Attirbutes ==> Attributes
data/prime-phylo-1.0.11/src/cxx/libraries/prime/SequenceType.cc:80: Asignment ==> Assignment
data/prime-phylo-1.0.11/src/cxx/libraries/prime/EpochBDTProbs.hh:21: Probabilites ==> Probabilities
data/prime-phylo-1.0.11/src/cxx/libraries/prime/EpochBDTProbs.hh:208: probabilites ==> probabilities
data/prime-phylo-1.0.11/src/cxx/libraries/prime/EpochBDTProbs.hh:254: probabilites ==> probabilities
data/prime-phylo-1.0.11/src/cxx/libraries/prime/EpochBDTProbs.hh:302: probabilites ==> probabilities
data/prime-phylo-1.0.11/src/cxx/libraries/prime/PRNG.hh:51: ot ==> to, of, or
data/prime-phylo-1.0.11/src/cxx/libraries/prime/SequenceGenerator.hh:48: Assigment ==> Assignment
data/prime-phylo-1.0.11/src/cxx/libraries/prime/beep2blas.hh:7: modifed ==> modified
data/prime-phylo-1.0.11/src/cxx/libraries/prime/SetOfNodes.hh:21: declartations ==> declarations
data/prime-phylo-1.0.11/src/cxx/libraries/prime/ReconciliationTimeModel.cc:88: Acess ==> Access
data/prime-phylo-1.0.11/src/cxx/libraries/prime/ReconciliationTimeModel.cc:191: acn ==> can, acne
data/prime-phylo-1.0.11/src/cxx/libraries/prime/ReconciliationTimeModel.cc:202: acn ==> can, acne
data/prime-phylo-1.0.11/src/cxx/libraries/prime/ReconciliationTimeModel.cc:222: acn ==> can, acne
data/prime-phylo-1.0.11/src/cxx/libraries/prime/ReconciliationTimeModel.cc:302: betweeen ==> between
data/prime-phylo-1.0.11/src/cxx/libraries/prime/ReconciliationTimeModel.cc:345: everythings ==> everything
data/prime-phylo-1.0.11/src/cxx/libraries/prime/ReconciliationTimeModel.cc:374: acn ==> can, acne
data/prime-phylo-1.0.11/src/cxx/libraries/prime/ReconciliationTimeModel.cc:383: acn ==> can, acne
data/prime-phylo-1.0.11/src/cxx/libraries/prime/ReconciliationTimeModel.cc:386: acn ==> can, acne
data/prime-phylo-1.0.11/src/cxx/libraries/prime/ReconciliationTimeModel.cc:402: acn ==> can, acne
data/prime-phylo-1.0.11/src/cxx/libraries/prime/ReconciliationTimeModel.cc:412: acn ==> can, acne
data/prime-phylo-1.0.11/src/cxx/libraries/prime/LambdaMap.cc:179: occured ==> occurred
data/prime-phylo-1.0.11/src/cxx/libraries/prime/MCMCModel.hh:185: occurances ==> occurrences
data/prime-phylo-1.0.11/src/cxx/libraries/prime/ReconciliationTimeSampler.cc:97: Acess ==> Access
data/prime-phylo-1.0.11/src/cxx/libraries/prime/ReconciliationTimeSampler.cc:164: intergrating ==> integrating
data/prime-phylo-1.0.11/src/cxx/libraries/prime/ReconciliationTimeSampler.cc:203: acn ==> can, acne
data/prime-phylo-1.0.11/src/cxx/libraries/prime/ReconciliationTimeSampler.cc:209: acn ==> can, acne
data/prime-phylo-1.0.11/src/cxx/libraries/prime/ReconciliationTimeSampler.cc:215: acn ==> can, acne
data/prime-phylo-1.0.11/src/cxx/libraries/prime/ReconciliationTimeSampler.cc:233: acn ==> can, acne
data/prime-phylo-1.0.11/src/cxx/libraries/prime/ReconciliationTimeSampler.cc:402: betweeen ==> between
data/prime-phylo-1.0.11/src/cxx/libraries/prime/SubstitutionMCMC.hh:20: handels ==> handles
data/prime-phylo-1.0.11/src/cxx/libraries/prime/Probability.cc:68: implment ==> implement
data/prime-phylo-1.0.11/src/cxx/libraries/prime/Probability.cc:674: arithmetics ==> arithmetic
data/prime-phylo-1.0.11/src/cxx/libraries/prime/ODESolver.hh:22: invokation ==> invocation
data/prime-phylo-1.0.11/src/cxx/libraries/prime/ODESolver.hh:97: Udated ==> Updated, dated
data/prime-phylo-1.0.11/src/cxx/libraries/prime/SequenceData.cc:181: thouroughly ==> thoroughly
data/prime-phylo-1.0.11/src/cxx/libraries/prime/TreeIO.cc:186: Doese ==> Does
data/prime-phylo-1.0.11/src/cxx/libraries/prime/TreeIO.cc:233: hasNT ==> hasn't
data/prime-phylo-1.0.11/src/cxx/libraries/prime/TreeIO.cc:259: hasNT ==> hasn't
data/prime-phylo-1.0.11/src/cxx/libraries/prime/TreeIO.cc:335: Doese ==> Does
data/prime-phylo-1.0.11/src/cxx/libraries/prime/TreeIO.cc:368: hasNT ==> hasn't
data/prime-phylo-1.0.11/src/cxx/libraries/prime/TreeIO.cc:383: hasNT ==> hasn't
data/prime-phylo-1.0.11/src/cxx/libraries/prime/TreeIO.cc:390: hasNT ==> hasn't
data/prime-phylo-1.0.11/src/cxx/libraries/prime/TreeIO.cc:651: hasNT ==> hasn't
data/prime-phylo-1.0.11/src/cxx/libraries/prime/TreeIO.cc:680: hasNT ==> hasn't
data/prime-phylo-1.0.11/src/cxx/libraries/prime/TreeIO.cc:1022: hasNT ==> hasn't
data/prime-phylo-1.0.11/src/cxx/libraries/prime/TreeIO.cc:1118: hasNT ==> hasn't
data/prime-phylo-1.0.11/src/cxx/libraries/prime/TreeIO.cc:1317: hasNT ==> hasn't
data/prime-phylo-1.0.11/src/cxx/libraries/prime/SimpleObserver.hh:44: everytime ==> every time
data/prime-phylo-1.0.11/src/cxx/libraries/prime/SimpleMCMCPostSample.cc:62: commited ==> committed
data/prime-phylo-1.0.11/src/cxx/libraries/prime/BirthDeathInHybridProbs.cc:103: occuring ==> occurring
data/prime-phylo-1.0.11/src/cxx/libraries/prime/BirthDeathInHybridProbs.cc:125: occuring ==> occurring
data/prime-phylo-1.0.11/src/cxx/libraries/prime/GenericMatrix.hh:25: assigment ==> assignment
data/prime-phylo-1.0.11/src/cxx/libraries/prime/GenericMatrix.hh:96: assigment ==> assignment
data/prime-phylo-1.0.11/src/cxx/libraries/prime/SimpleMCMC.cc:106: supressed ==> suppressed
data/prime-phylo-1.0.11/src/cxx/libraries/prime/ReconciledTreeTimeMCMC.cc:348: nd ==> and, 2nd
data/prime-phylo-1.0.11/src/cxx/libraries/prime/ReconciledTreeTimeMCMC.cc:349: nd ==> and, 2nd
data/prime-phylo-1.0.11/src/cxx/libraries/prime/ReconciledTreeTimeMCMC.cc:352: nd ==> and, 2nd
data/prime-phylo-1.0.11/src/cxx/libraries/prime/ODESolver.cc:507: exlicit ==> explicit
data/prime-phylo-1.0.11/src/cxx/libraries/prime/SequenceData.hh:19: accesing ==> accessing
data/prime-phylo-1.0.11/src/cxx/libraries/prime/DummyStdMCMC.hh:21: fro ==> for, from
data/prime-phylo-1.0.11/src/cxx/libraries/prime/ReconciledTreeModel.hh:125: multplies ==> multiplies
data/prime-phylo-1.0.11/src/cxx/libraries/prime/EdgeWeightMCMC.cc:310: Documnet ==> Document
data/prime-phylo-1.0.11/src/cxx/libraries/prime/HybridTree.hh:46: throgh ==> through
data/prime-phylo-1.0.11/src/cxx/libraries/prime/HybridTree.hh:129: othe ==> other
data/prime-phylo-1.0.11/src/cxx/libraries/prime/BDTreeGenerator.hh:26: occuring ==> occurring
data/prime-phylo-1.0.11/src/cxx/libraries/prime/HybridTreeIO.hh:80: detemines ==> determines
data/prime-phylo-1.0.11/src/cxx/libraries/prime/PRNG.cc:50: constuctor ==> constructor
data/prime-phylo-1.0.11/src/cxx/libraries/prime/PRNG.cc:56: Ist ==> Is, it, its, it's, sit, list
data/prime-phylo-1.0.11/src/cxx/libraries/prime/PRNG.cc:56: som ==> some
data/prime-phylo-1.0.11/src/cxx/libraries/prime/PvmBeep.hh:11: severly ==> severely
data/prime-phylo-1.0.11/src/cxx/libraries/prime/PvmBeep.hh:26: recieving ==> receiving
data/prime-phylo-1.0.11/src/cxx/libraries/prime/EpochPtMaps.cc:134: Excplicit ==> Explicit
data/prime-phylo-1.0.11/src/cxx/libraries/prime/DiscreteGamma.hh:46: Auxilliary ==> Auxiliary
data/prime-phylo-1.0.11/src/cxx/libraries/prime/DiscreteGamma.hh:142: rquired ==> required
data/prime-phylo-1.0.11/src/cxx/libraries/prime/EdgeWeightMCMC.hh:97: Attibutes ==> Attributes
data/prime-phylo-1.0.11/src/cxx/libraries/prime/Generic3DMatrix.hh:25: assigment ==> assignment
data/prime-phylo-1.0.11/src/cxx/libraries/prime/Generic3DMatrix.hh:100: assigment ==> assignment
data/prime-phylo-1.0.11/src/cxx/libraries/prime/EpochDLTRS.hh:248: probabilites ==> probabilities
data/prime-phylo-1.0.11/src/cxx/libraries/prime/EpochDLTRS.hh:328: correponding ==> corresponding
data/prime-phylo-1.0.11/src/cxx/libraries/prime/EpochDLTRS.hh:330: pertubation ==> perturbation
data/prime-phylo-1.0.11/src/cxx/libraries/prime/EpochDLTRS.hh:336: probabilites ==> probabilities
data/prime-phylo-1.0.11/src/cxx/libraries/prime/EpochDLTRS.hh:349: probabilites ==> probabilities
data/prime-phylo-1.0.11/src/cxx/libraries/prime/ReconciliationTimeMCMC.cc:434: liek ==> like
data/prime-phylo-1.0.11/src/cxx/libraries/prime/MatrixTransitionHandler.hh:38: Assignement ==> Assignment
data/prime-phylo-1.0.11/src/cxx/libraries/prime/fastGEM.hh:41: occurrs ==> occurs
data/prime-phylo-1.0.11/src/cxx/libraries/prime/BirthDeathProbs.cc:188: occuring ==> occurring
data/prime-phylo-1.0.11/src/cxx/libraries/prime/BirthDeathProbs.cc:210: occuring ==> occurring
data/prime-phylo-1.0.11/src/cxx/libraries/prime/BirthDeathProbs.cc:237: childs ==> children, child's
data/prime-phylo-1.0.11/src/cxx/libraries/prime/EdgeDiscPtKeyIterator.hh:118: exeception ==> exception
data/prime-phylo-1.0.11/src/cxx/libraries/prime/EdgeDiscPtKeyIterator.hh:153: exeception ==> exception
data/prime-phylo-1.0.11/src/cxx/libraries/prime/DPLengthFactorizer.hh:38: constuctor ==> constructor
data/prime-phylo-1.0.11/src/cxx/libraries/prime/SimpleMCMC.hh:91: everytime ==> every time
data/prime-phylo-1.0.11/src/cxx/libraries/prime/fastGEM.cc:1388: intergration ==> integration
data/prime-phylo-1.0.11/src/cxx/libraries/prime/LA_DiagonalMatrix.cc:139: continuosly ==> continuously
data/prime-phylo-1.0.11/src/cxx/libraries/prime/Node.hh:51: assigment ==> assignment
data/prime-phylo-1.0.11/src/cxx/libraries/prime/Node.hh:174: guarenteed ==> guaranteed
data/prime-phylo-1.0.11/src/cxx/libraries/prime/Node.hh:309: explicitely ==> explicitly
data/prime-phylo-1.0.11/src/cxx/libraries/prime/BeepOption.hh:534: useage ==> usage
data/prime-phylo-1.0.11/src/cxx/libraries/prime/EdgeRateMCMC_common.hh:472: inluding ==> including
data/prime-phylo-1.0.11/src/cxx/libraries/prime/BirthDeathProbs.hh:25: formaly ==> formally, formerly
data/prime-phylo-1.0.11/src/cxx/libraries/prime/BirthDeathProbs.hh:113: childs ==> children, child's
data/prime-phylo-1.0.11/src/cxx/libraries/prime/FastCacheSubstitutionModel.cc:168: funciton ==> function
data/prime-phylo-1.0.11/src/cxx/libraries/prime/LA_Matrix.cc:181: continuosly ==> continuously
data/prime-phylo-1.0.11/src/cxx/libraries/prime/LA_Matrix.cc:205: continuosly ==> continuously
data/prime-phylo-1.0.11/src/cxx/libraries/prime/LA_Matrix.cc:226: continuosly ==> continuously
data/prime-phylo-1.0.11/src/cxx/libraries/prime/LA_Matrix.cc:252: continuosly ==> continuously
data/prime-phylo-1.0.11/src/cxx/libraries/prime/LA_Matrix.cc:308: continuosly ==> continuously
data/prime-phylo-1.0.11/src/cxx/libraries/prime/LA_Matrix.cc:399: continuosly ==> continuously
data/prime-phylo-1.0.11/src/cxx/libraries/prime/LA_Matrix.cc:472: beacuse ==> because
data/prime-phylo-1.0.11/src/cxx/libraries/prime/Tree.hh:141: identifer ==> identifier
data/prime-phylo-1.0.11/src/cxx/libraries/prime/VarRateModel.cc:548: orginal ==> original
data/prime-phylo-1.0.11/src/cxx/libraries/prime/LA_Vector.cc:142: continuosly ==> continuously
data/prime-phylo-1.0.11/src/cxx/libraries/prime/LA_Vector.cc:163: continuosly ==> continuously
data/prime-phylo-1.0.11/src/cxx/libraries/prime/LA_Vector.cc:191: continuosly ==> continuously
data/prime-phylo-1.0.11/src/cxx/libraries/prime/LA_Vector.cc:219: continuosly ==> continuously
data/prime-phylo-1.0.11/src/cxx/libraries/prime/LA_Vector.cc:234: continuosly ==> continuously
data/prime-phylo-1.0.11/src/cxx/libraries/prime/TreeDiscretizer.hh:232: beteween ==> between
data/prime-phylo-1.0.11/src/cxx/libraries/prime/CacheSubstitutionModel.cc:166: funciton ==> function
data/prime-phylo-1.0.11/src/cxx/libraries/prime/lsd/LSDGeneTreeGenerator.cc:87: Intialize ==> Initialize
data/prime-phylo-1.0.11/src/cxx/libraries/prime/lsd/LSDGeneTreeGenerator.cc:360: Intialize ==> Initialize
data/prime-phylo-1.0.11/src/cxx/libraries/prime/lsd/LSDGeneTreeGenerator.cc:402: occuring ==> occurring
data/prime-phylo-1.0.11/src/cxx/libraries/prime/lsd/LSDGeneTreeGenerator.hh:1: specifed ==> specified
data/prime-phylo-1.0.11/src/cxx/libraries/prime/lsd/ApproximateEstimator.cc:58: wether ==> weather, whether
data/prime-phylo-1.0.11/src/cxx/libraries/prime/lsd/ApproximateEstimator.cc:186: occurence ==> occurrence
data/prime-phylo-1.0.11/src/cxx/libraries/prime/lsd/ApproximateEstimator.cc:189: occurence ==> occurrence
data/prime-phylo-1.0.11/src/cxx/libraries/prime/lsd/ApproximateEstimator.cc:192: occurence ==> occurrence
data/prime-phylo-1.0.11/src/cxx/libraries/prime/lsd/ApproximateEstimator.cc:195: occurence ==> occurrence
data/prime-phylo-1.0.11/src/cxx/libraries/prime/lsd/LSDModelSelector.hh:39: perfrom ==> perform
data/prime-phylo-1.0.11/src/cxx/libraries/sfile/README:4: preferrably ==> preferably
data/prime-phylo-1.0.11/src/cxx/libraries/sfile/README:5: preferrably ==> preferably
data/prime-phylo-1.0.11/src/cxx/libraries/sfile/sfile.h:7: compatability ==> compatibility
data/prime-phylo-1.0.11/src/cxx/libraries/sfile/sfile.c:267: Initally ==> Initially
data/prime-phylo-1.0.11/src/cxx/libraries/sfile/seqreader.l:297: Progamming ==> Programming
data/prime-phylo-1.0.11/src/cxx/libraries/sfile/seqreader.l:358: Progamming ==> Programming
data/prime-phylo-1.0.11/src/cxx/tools/showtree2/showtree.cc:24: hasNT ==> hasn't
data/prime-phylo-1.0.11/src/cxx/tools/showtree2/showtree.cc.before-gengetopt:62: hasNT ==> hasn't
data/prime-phylo-1.0.11/src/cxx/tools/showtree/showtree.cc:19: functinality ==> functionality
data/prime-phylo-1.0.11/src/cxx/tools/showtree/showtree.cc:32: hasNT ==> hasn't
data/prime-phylo-1.0.11/src/cxx/tools/showtree/showtree.cc.before-gengetopt:62: hasNT ==> hasn't
data/prime-phylo-1.0.11/src/cxx/tools/showhost/Yeast.S:1: Anid ==> And
data/prime-phylo-1.0.11/src/cxx/tools/prime_s/test_SubstitutionModel.cc:118: calcualtion ==> calculation
data/prime-phylo-1.0.11/src/cxx/tools/lsdcombine/GraphPlotter.cc:115: cordinates ==> coordinates
data/prime-phylo-1.0.11/src/cxx/tools/lsdcombine/GraphPlotter.cc:115: cordinates ==> coordinates
data/prime-phylo-1.0.11/src/cxx/tools/lsdcombine/GraphPlotter.hh:22: specifed ==> specified
data/prime-phylo-1.0.11/src/cxx/tools/lsdcombine/lsdcombine.cc:106: specifed ==> specified
data/prime-phylo-1.0.11/src/cxx/tools/getwgd/getwgd.cc:18: ambigous ==> ambiguous
data/prime-phylo-1.0.11/src/cxx/tools/getwgd/getwgd.cc:65: Ambigous ==> Ambiguous
data/prime-phylo-1.0.11/src/cxx/tools/compute_ortho/GeneSet.hh:9: larget ==> larger, largest, target
data/prime-phylo-1.0.11/src/cxx/tools/compute_ortho/VirtualVertex.hh:96: Descides ==> Decides
data/prime-phylo-1.0.11/src/cxx/tools/genGSR/genGSR.cc:263: specifed ==> specified
data/prime-phylo-1.0.11/src/cxx/test_applications/beep_generateSeqData/beep_generateSeqData.cc:139: hasNT ==> hasn't
data/prime-phylo-1.0.11/src/cxx/applications/primeCT/GeneSet.hh:9: larget ==> larger, largest, target
data/prime-phylo-1.0.11/src/cxx/applications/primeCT/VirtualVertex.hh:96: Descides ==> Decides
data/prime-phylo-1.0.11/src/cxx/applications/primeCT/primect.cc:71: desciding ==> deciding
data/prime-phylo-1.0.11/src/cxx/applications/primeCT/primect.cc:399: conquerers ==> conquerors
data/prime-phylo-1.0.11/src/cxx/applications/primeCT/primect.cc:860: reperesenting ==> representing
data/prime-phylo-1.0.11/src/cxx/applications/primeCT/primect.cc:861: occured ==> occurred
data/prime-phylo-1.0.11/src/cxx/applications/primeCT/ConsensusNode.cc:347: childs ==> children, child's
data/prime-phylo-1.0.11/src/cxx/applications/primeRecon/GeneSet.hh:9: larget ==> larger, largest, target
data/prime-phylo-1.0.11/src/cxx/applications/primeRecon/primeRecon.cc:76: desciding ==> deciding
data/prime-phylo-1.0.11/src/cxx/applications/primeRecon/primeRecon.cc:885: reperesenting ==> representing
data/prime-phylo-1.0.11/src/cxx/applications/primeRecon/primeRecon.cc:886: occured ==> occurred
data/prime-phylo-1.0.11/src/cxx/applications/primeRecon/primeRecon.cc:1481: conquerers ==> conquerors
data/prime-phylo-1.0.11/src/cxx/applications/primeRecon/VirtualVertex.hh:96: Descides ==> Decides
data/prime-phylo-1.0.11/src/cxx/applications/primeRecon/cmdline.ggo.cmake:12: seperated ==> separated
data/prime-phylo-1.0.11/src/cxx/applications/primeRecon/ConsensusNode.cc:347: childs ==> children, child's
data/prime-phylo-1.0.11/src/perl/mcmc_analysis:521: befor ==> before