data/psortb-3.0.6+dfsg/INSTALL:108: equivilant ==> equivalent
data/psortb-3.0.6+dfsg/USAGE:30: instalation ==> installation
data/psortb-3.0.6+dfsg/USAGE:64: equivilent ==> equivalent
data/psortb-3.0.6+dfsg/bio-tools-psort-modhmm/t/modhmm.t:29: Retreiving ==> Retrieving
data/psortb-3.0.6+dfsg/bio-tools-psort-modhmm/t/modhmm.t:31: Retreiving ==> Retrieving
data/psortb-3.0.6+dfsg/bio-tools-psort-modhmm/modhmm0.92b/structs.h:161: arrray ==> array
data/psortb-3.0.6+dfsg/bio-tools-psort-modhmm/modhmm0.92b/structs.h:173: emiss ==> remiss, amiss, amass
data/psortb-3.0.6+dfsg/bio-tools-psort-modhmm/modhmm0.92b/structs.h:245: arrray ==> array
data/psortb-3.0.6+dfsg/bio-tools-psort-modhmm/modhmm0.92b/structs.h:266: emiss ==> remiss, amiss, amass
data/psortb-3.0.6+dfsg/bio-tools-psort-modhmm/modhmm0.92b/structs.h:267: emiss ==> remiss, amiss, amass
data/psortb-3.0.6+dfsg/bio-tools-psort-modhmm/modhmm0.92b/structs.h:268: emiss ==> remiss, amiss, amass
data/psortb-3.0.6+dfsg/bio-tools-psort-modhmm/modhmm0.92b/structs.h:269: emiss ==> remiss, amiss, amass
data/psortb-3.0.6+dfsg/bio-tools-psort-modhmm/modhmm0.92b/structs.h:531: occurences ==> occurrences
data/psortb-3.0.6+dfsg/lib/Bio/Tools/Signal.pm:132: occurences ==> occurrences
data/psortb-3.0.6+dfsg/lib/Bio/Tools/Signal.pm:190: recieved ==> received
data/psortb-3.0.6+dfsg/lib/Bio/Tools/Signal.pm:193: occurences ==> occurrences
data/psortb-3.0.6+dfsg/lib/Bio/Tools/PSort.pm:17: dicussed ==> discussed
data/psortb-3.0.6+dfsg/lib/Bio/Tools/Run/HMMTOP.pm:113: spred ==> spread
data/psortb-3.0.6+dfsg/lib/Bio/Tools/PSort/Install.pm:67: nWe ==> new
data/psortb-3.0.6+dfsg/lib/Bio/Tools/PSort/Install.pm:86: nWe ==> new
data/psortb-3.0.6+dfsg/lib/Bio/Tools/PSort/Install.pm:91: nWe ==> new
data/psortb-3.0.6+dfsg/lib/Bio/Tools/PSort/Report/Formatter/normal.pm:90: nastly ==> nasty
data/psortb-3.0.6+dfsg/lib/Bio/Tools/PSort/Module/ModHMM.pm:84: openning ==> opening
data/psortb-3.0.6+dfsg/lib/Bio/Tools/PSort/Module/ModHMM.pm:86: openning ==> opening
data/psortb-3.0.6+dfsg/algorithm-hmm/sample.hmm:4: ALPH ==> ALPHA
data/psortb-3.0.6+dfsg/algorithm-hmm/lib/Algorithm/HMM.pm:149: maxium ==> maximum
data/psortb-3.0.6+dfsg/bio-tools-psort-svmloc/fre_patterns.txt:198: YSE ==> YES, USE, NYSE
data/psortb-3.0.6+dfsg/bio-tools-psort-svmloc/fre_patterns.txt:711: YHE ==> THE
data/psortb-3.0.6+dfsg/bio-tools-psort-svmloc/fre_patterns.txt:1150: WYA ==> WAY
data/psortb-3.0.6+dfsg/bio-tools-psort-svmloc/fre_patterns.txt:1270: WQS ==> WAS
data/psortb-3.0.6+dfsg/bio-tools-psort-svmloc/fre_patterns.txt:1336: WLL ==> WILL
data/psortb-3.0.6+dfsg/bio-tools-psort-svmloc/fre_patterns.txt:1397: WIL ==> WILL, WELL
data/psortb-3.0.6+dfsg/bio-tools-psort-svmloc/fre_patterns.txt:1403: WIT ==> WITH
data/psortb-3.0.6+dfsg/bio-tools-psort-svmloc/fre_patterns.txt:1472: WEE ==> WE
data/psortb-3.0.6+dfsg/bio-tools-psort-svmloc/fre_patterns.txt:1532: WAN ==> WANT
data/psortb-3.0.6+dfsg/bio-tools-psort-svmloc/fre_patterns.txt:1615: VYER ==> VERY
data/psortb-3.0.6+dfsg/bio-tools-psort-svmloc/fre_patterns.txt:3231: VIE ==> VIA
data/psortb-3.0.6+dfsg/bio-tools-psort-svmloc/fre_patterns.txt:3317: VILL ==> WILL
data/psortb-3.0.6+dfsg/bio-tools-psort-svmloc/fre_patterns.txt:3753: VEW ==> VIEW
data/psortb-3.0.6+dfsg/bio-tools-psort-svmloc/fre_patterns.txt:3825: VELL ==> WELL
data/psortb-3.0.6+dfsg/bio-tools-psort-svmloc/fre_patterns.txt:4161: VAS ==> WAS
data/psortb-3.0.6+dfsg/bio-tools-psort-svmloc/fre_patterns.txt:4174: VAVE ==> HAVE, VALVE
data/psortb-3.0.6+dfsg/bio-tools-psort-svmloc/fre_patterns.txt:4312: VAID ==> VALID, VOID
data/psortb-3.0.6+dfsg/bio-tools-psort-svmloc/fre_patterns.txt:4424: TE ==> THE, BE, WE
data/psortb-3.0.6+dfsg/bio-tools-psort-svmloc/fre_patterns.txt:4443: TYE ==> TYPE, TIE
data/psortb-3.0.6+dfsg/bio-tools-psort-svmloc/fre_patterns.txt:4902: TRE ==> TREE
data/psortb-3.0.6+dfsg/bio-tools-psort-svmloc/fre_patterns.txt:5768: THA ==> THAN, THAT, THE
data/psortb-3.0.6+dfsg/bio-tools-psort-svmloc/fre_patterns.txt:5775: THI ==> THE, THIS
data/psortb-3.0.6+dfsg/bio-tools-psort-svmloc/fre_patterns.txt:5778: THN ==> THEN
data/psortb-3.0.6+dfsg/bio-tools-psort-svmloc/fre_patterns.txt:5780: THQ ==> THE
data/psortb-3.0.6+dfsg/bio-tools-psort-svmloc/fre_patterns.txt:5782: THS ==> THE, THIS
data/psortb-3.0.6+dfsg/bio-tools-psort-svmloc/fre_patterns.txt:5783: THT ==> THE, THAT
data/psortb-3.0.6+dfsg/bio-tools-psort-svmloc/fre_patterns.txt:5797: THEI ==> THEIR, THEY
data/psortb-3.0.6+dfsg/bio-tools-psort-svmloc/fre_patterns.txt:6045: TEH ==> THE
data/psortb-3.0.6+dfsg/bio-tools-psort-svmloc/fre_patterns.txt:6058: TEY ==> THEY
data/psortb-3.0.6+dfsg/bio-tools-psort-svmloc/fre_patterns.txt:6419: TAHT ==> THAT
data/psortb-3.0.6+dfsg/bio-tools-psort-svmloc/fre_patterns.txt:6421: TAGE ==> STAGE, TAKE, TAG, TAGGED
data/psortb-3.0.6+dfsg/bio-tools-psort-svmloc/fre_patterns.txt:6713: SVAE ==> SAVE
data/psortb-3.0.6+dfsg/bio-tools-psort-svmloc/fre_patterns.txt:6811: STIL ==> STILL
data/psortb-3.0.6+dfsg/bio-tools-psort-svmloc/fre_patterns.txt:6841: STAE ==> STATE
data/psortb-3.0.6+dfsg/bio-tools-psort-svmloc/fre_patterns.txt:6928: SSEE ==> SEE
data/psortb-3.0.6+dfsg/bio-tools-psort-svmloc/fre_patterns.txt:7327: SMLL ==> SMALL, SMELL
data/psortb-3.0.6+dfsg/bio-tools-psort-svmloc/fre_patterns.txt:7668: SIE ==> SIZE, SIGH
data/psortb-3.0.6+dfsg/bio-tools-psort-svmloc/fre_patterns.txt:7702: SISE ==> SIZE, SISAL
data/psortb-3.0.6+dfsg/bio-tools-psort-svmloc/fre_patterns.txt:8100: SEH ==> SHE
data/psortb-3.0.6+dfsg/bio-tools-psort-svmloc/fre_patterns.txt:8108: SER ==> SET
data/psortb-3.0.6+dfsg/bio-tools-psort-svmloc/fre_patterns.txt:8115: SEVE ==> SAVE, SIEVE
data/psortb-3.0.6+dfsg/bio-tools-psort-svmloc/fre_patterns.txt:8165: SELT ==> SET, SELF, SOLD
data/psortb-3.0.6+dfsg/bio-tools-psort-svmloc/fre_patterns.txt:8166: SELV ==> SELF
data/psortb-3.0.6+dfsg/bio-tools-psort-svmloc/fre_patterns.txt:8371: SAV ==> SAVE
data/psortb-3.0.6+dfsg/bio-tools-psort-svmloc/fre_patterns.txt:8480: SAIS ==> SAYS
data/psortb-3.0.6+dfsg/bio-tools-psort-svmloc/fre_patterns.txt:8521: SADE ==> SAD
data/psortb-3.0.6+dfsg/bio-tools-psort-svmloc/fre_patterns.txt:8541: SAAME ==> SAME
data/psortb-3.0.6+dfsg/bio-tools-psort-svmloc/fre_patterns.txt:9866: RIGT ==> RIGHT
data/psortb-3.0.6+dfsg/bio-tools-psort-svmloc/fre_patterns.txt:10367: REALL ==> REAL, REALLY
data/psortb-3.0.6+dfsg/bio-tools-psort-svmloc/fre_patterns.txt:10632: RAED ==> READ
data/psortb-3.0.6+dfsg/bio-tools-psort-svmloc/fre_patterns.txt:10642: RADE ==> READ, RAID
data/psortb-3.0.6+dfsg/bio-tools-psort-svmloc/fre_patterns.txt:10648: RADY ==> READY
data/psortb-3.0.6+dfsg/bio-tools-psort-svmloc/fre_patterns.txt:12330: PTD ==> PDF
data/psortb-3.0.6+dfsg/bio-tools-psort-svmloc/fre_patterns.txt:13361: PEGE ==> PAGE
data/psortb-3.0.6+dfsg/bio-tools-psort-svmloc/fre_patterns.txt:13610: PAHT ==> PATH, PAT, PART
data/psortb-3.0.6+dfsg/bio-tools-psort-svmloc/fre_patterns.txt:13654: ND ==> AND, 2ND
data/psortb-3.0.6+dfsg/bio-tools-psort-svmloc/fre_patterns.txt:13717: NWE ==> NEW
data/psortb-3.0.6+dfsg/bio-tools-psort-svmloc/fre_patterns.txt:14541: NIN ==> INN, MIN, BIN, NINE
data/psortb-3.0.6+dfsg/bio-tools-psort-svmloc/fre_patterns.txt:14828: NED ==> NEED
data/psortb-3.0.6+dfsg/bio-tools-psort-svmloc/fre_patterns.txt:15230: MYE ==> MAY, MY
data/psortb-3.0.6+dfsg/bio-tools-psort-svmloc/fre_patterns.txt:15725: MKE ==> MAKE
data/psortb-3.0.6+dfsg/bio-tools-psort-svmloc/fre_patterns.txt:15755: MKEA ==> MAKE
data/psortb-3.0.6+dfsg/bio-tools-psort-svmloc/fre_patterns.txt:15809: MIAL ==> MAIL
data/psortb-3.0.6+dfsg/bio-tools-psort-svmloc/fre_patterns.txt:15975: MENY ==> MENU, MANY
data/psortb-3.0.6+dfsg/bio-tools-psort-svmloc/fre_patterns.txt:16096: MATA ==> META, MATER
data/psortb-3.0.6+dfsg/bio-tools-psort-svmloc/fre_patterns.txt:16118: MAKA ==> MAKE
data/psortb-3.0.6+dfsg/bio-tools-psort-svmloc/fre_patterns.txt:16955: LSIT ==> LIST, SLIT, SIT
data/psortb-3.0.6+dfsg/bio-tools-psort-svmloc/fre_patterns.txt:17032: LSAT ==> LAST, SLAT, SAT
data/psortb-3.0.6+dfsg/bio-tools-psort-svmloc/fre_patterns.txt:18169: LKE ==> LIKE
data/psortb-3.0.6+dfsg/bio-tools-psort-svmloc/fre_patterns.txt:18395: LIK ==> LIKE, LICK, LINK
data/psortb-3.0.6+dfsg/bio-tools-psort-svmloc/fre_patterns.txt:18425: LITS ==> LIST
data/psortb-3.0.6+dfsg/bio-tools-psort-svmloc/fre_patterns.txt:18531: LIEK ==> LIKE
data/psortb-3.0.6+dfsg/bio-tools-psort-svmloc/fre_patterns.txt:18538: LIEV ==> LIVE
data/psortb-3.0.6+dfsg/bio-tools-psort-svmloc/fre_patterns.txt:19077: LEVL ==> LEVEL
data/psortb-3.0.6+dfsg/bio-tools-psort-svmloc/fre_patterns.txt:19118: LERN ==> LEARN, LEAN
data/psortb-3.0.6+dfsg/bio-tools-psort-svmloc/fre_patterns.txt:19326: LEAS ==> LEAST, LEASE
data/psortb-3.0.6+dfsg/bio-tools-psort-svmloc/fre_patterns.txt:19327: LEAT ==> LEAD, LEAK, LEAST, LEAF
data/psortb-3.0.6+dfsg/bio-tools-psort-svmloc/fre_patterns.txt:19671: LARG ==> LARGE
data/psortb-3.0.6+dfsg/bio-tools-psort-svmloc/fre_patterns.txt:21690: KET ==> KEPT
data/psortb-3.0.6+dfsg/bio-tools-psort-svmloc/fre_patterns.txt:22153: KAKE ==> CAKE, TAKE
data/psortb-3.0.6+dfsg/bio-tools-psort-svmloc/fre_patterns.txt:22641: IST ==> IS, IT, ITS, IT'S, SIT, LIST
data/psortb-3.0.6+dfsg/bio-tools-psort-svmloc/fre_patterns.txt:23189: INES ==> LINES
data/psortb-3.0.6+dfsg/bio-tools-psort-svmloc/fre_patterns.txt:23614: IIF ==> IF
data/psortb-3.0.6+dfsg/bio-tools-psort-svmloc/fre_patterns.txt:23782: IHS ==> HIS
data/psortb-3.0.6+dfsg/bio-tools-psort-svmloc/fre_patterns.txt:24464: IDAE ==> IDEA
data/psortb-3.0.6+dfsg/bio-tools-psort-svmloc/fre_patterns.txt:24776: HVE ==> HAVE
data/psortb-3.0.6+dfsg/bio-tools-psort-svmloc/fre_patterns.txt:24849: HTE ==> THE
data/psortb-3.0.6+dfsg/bio-tools-psort-svmloc/fre_patterns.txt:24891: HSA ==> HAS
data/psortb-3.0.6+dfsg/bio-tools-psort-svmloc/fre_patterns.txt:24897: HSI ==> HIS
data/psortb-3.0.6+dfsg/bio-tools-psort-svmloc/fre_patterns.txt:25278: HGE ==> HE
data/psortb-3.0.6+dfsg/bio-tools-psort-svmloc/fre_patterns.txt:25378: HEL ==> HELP, HELL, HEAL
data/psortb-3.0.6+dfsg/bio-tools-psort-svmloc/fre_patterns.txt:25417: HDA ==> HAD
data/psortb-3.0.6+dfsg/bio-tools-psort-svmloc/fre_patterns.txt:25474: HAA ==> HAS
data/psortb-3.0.6+dfsg/bio-tools-psort-svmloc/fre_patterns.txt:25495: HAVA ==> HAVE, HAVE A
data/psortb-3.0.6+dfsg/bio-tools-psort-svmloc/fre_patterns.txt:25515: HALD ==> HELD
data/psortb-3.0.6+dfsg/bio-tools-psort-svmloc/fre_patterns.txt:27240: GIR ==> GIT
data/psortb-3.0.6+dfsg/bio-tools-psort-svmloc/fre_patterns.txt:27934: GESS ==> GUESS
data/psortb-3.0.6+dfsg/bio-tools-psort-svmloc/fre_patterns.txt:28350: GARD ==> GUARD
data/psortb-3.0.6+dfsg/bio-tools-psort-svmloc/fre_patterns.txt:28619: FWE ==> FEW
data/psortb-3.0.6+dfsg/bio-tools-psort-svmloc/fre_patterns.txt:29027: FPR ==> FOR, FAR, FPS
data/psortb-3.0.6+dfsg/bio-tools-psort-svmloc/fre_patterns.txt:29172: FLE ==> FILE
data/psortb-3.0.6+dfsg/bio-tools-psort-svmloc/fre_patterns.txt:29248: FLIE ==> FILE
data/psortb-3.0.6+dfsg/bio-tools-psort-svmloc/fre_patterns.txt:29409: FILP ==> FLIP
data/psortb-3.0.6+dfsg/bio-tools-psort-svmloc/fre_patterns.txt:29733: FEEK ==> FEEL
data/psortb-3.0.6+dfsg/bio-tools-psort-svmloc/fre_patterns.txt:29898: FAVE ==> SAVE
data/psortb-3.0.6+dfsg/bio-tools-psort-svmloc/fre_patterns.txt:29907: FASE ==> FAZE, PHASE
data/psortb-3.0.6+dfsg/bio-tools-psort-svmloc/fre_patterns.txt:30020: EYT ==> YET
data/psortb-3.0.6+dfsg/bio-tools-psort-svmloc/fre_patterns.txt:30388: ETHE ==> THE
data/psortb-3.0.6+dfsg/bio-tools-psort-svmloc/fre_patterns.txt:30449: ESY ==> EASY
data/psortb-3.0.6+dfsg/bio-tools-psort-svmloc/fre_patterns.txt:30486: ESLE ==> ELSE
data/psortb-3.0.6+dfsg/bio-tools-psort-svmloc/fre_patterns.txt:30530: ESGE ==> EDGE
data/psortb-3.0.6+dfsg/bio-tools-psort-svmloc/fre_patterns.txt:30651: ERLY ==> EARLY
data/psortb-3.0.6+dfsg/bio-tools-psort-svmloc/fre_patterns.txt:31054: ENDE ==> END
data/psortb-3.0.6+dfsg/bio-tools-psort-svmloc/fre_patterns.txt:31390: ELES ==> ELSE
data/psortb-3.0.6+dfsg/bio-tools-psort-svmloc/fre_patterns.txt:31912: EHR ==> HER
data/psortb-3.0.6+dfsg/bio-tools-psort-svmloc/fre_patterns.txt:31955: EGE ==> EDGE
data/psortb-3.0.6+dfsg/bio-tools-psort-svmloc/fre_patterns.txt:32119: EGDE ==> EDGE
data/psortb-3.0.6+dfsg/bio-tools-psort-svmloc/fre_patterns.txt:32496: EDE ==> EDGE
data/psortb-3.0.6+dfsg/bio-tools-psort-svmloc/fre_patterns.txt:32504: EDN ==> END
data/psortb-3.0.6+dfsg/bio-tools-psort-svmloc/fre_patterns.txt:32646: ECT ==> ETC
data/psortb-3.0.6+dfsg/bio-tools-psort-svmloc/fre_patterns.txt:33709: DNE ==> DONE
data/psortb-3.0.6+dfsg/bio-tools-psort-svmloc/fre_patterns.txt:34348: DIDI ==> DID
data/psortb-3.0.6+dfsg/bio-tools-psort-svmloc/fre_patterns.txt:34714: DED ==> DEAD
data/psortb-3.0.6+dfsg/bio-tools-psort-svmloc/fre_patterns.txt:35052: DAA ==> DATA
data/psortb-3.0.6+dfsg/bio-tools-psort-svmloc/fre_patterns.txt:35240: DAED ==> DEAD
data/psortb-3.0.6+dfsg/bio-tools-psort-svmloc/fre_patterns.txt:35244: DAEL ==> DEAL, DIAL, DAHL
data/psortb-3.0.6+dfsg/bio-tools-psort-svmloc/fre_patterns.txt:35429: CNA ==> CAN
data/psortb-3.0.6+dfsg/bio-tools-psort-svmloc/fre_patterns.txt:35522: CIPS ==> CHIPS
data/psortb-3.0.6+dfsg/bio-tools-psort-svmloc/fre_patterns.txt:36151: ATLL ==> ALL
data/psortb-3.0.6+dfsg/bio-tools-psort-svmloc/fre_patterns.txt:36331: ASKE ==> ASK
data/psortb-3.0.6+dfsg/bio-tools-psort-svmloc/fre_patterns.txt:36345: ASII ==> ASCII
data/psortb-3.0.6+dfsg/bio-tools-psort-svmloc/fre_patterns.txt:36407: ASAI ==> ASIA
data/psortb-3.0.6+dfsg/bio-tools-psort-svmloc/fre_patterns.txt:36483: ARRE ==> ARE
data/psortb-3.0.6+dfsg/bio-tools-psort-svmloc/fre_patterns.txt:36623: ARAY ==> ARRAY
data/psortb-3.0.6+dfsg/bio-tools-psort-svmloc/fre_patterns.txt:36913: ANE ==> AND
data/psortb-3.0.6+dfsg/bio-tools-psort-svmloc/fre_patterns.txt:36925: ANS ==> AND
data/psortb-3.0.6+dfsg/bio-tools-psort-svmloc/fre_patterns.txt:37114: ALS ==> ALSO
data/psortb-3.0.6+dfsg/bio-tools-psort-svmloc/fre_patterns.txt:37157: ALSE ==> ALSO, ELSE, FALSE
data/psortb-3.0.6+dfsg/bio-tools-psort-svmloc/fre_patterns.txt:37249: ALLE ==> ALL, ALLEY
data/psortb-3.0.6+dfsg/bio-tools-psort-svmloc/fre_patterns.txt:37252: ALLK ==> ALL
data/psortb-3.0.6+dfsg/bio-tools-psort-svmloc/fre_patterns.txt:37259: ALLS ==> ALL, FALLS
data/psortb-3.0.6+dfsg/bio-tools-psort-svmloc/fre_patterns.txt:37302: ALHA ==> ALPHA
data/psortb-3.0.6+dfsg/bio-tools-psort-svmloc/fre_patterns.txt:37423: AKE ==> ACHE
data/psortb-3.0.6+dfsg/bio-tools-psort-svmloc/fre_patterns.txt:37435: AKS ==> ASK
data/psortb-3.0.6+dfsg/bio-tools-psort-svmloc/fre_patterns.txt:37511: AKSS ==> ASKS, ASS
data/psortb-3.0.6+dfsg/bio-tools-psort-svmloc/fre_patterns.txt:37959: AHVE ==> HAVE
data/psortb-3.0.6+dfsg/bio-tools-psort-svmloc/fre_patterns.txt:38089: AGRE ==> AGREE
data/psortb-3.0.6+dfsg/bio-tools-psort-svmloc/fre_patterns.txt:38186: AGIN ==> AGAIN
data/psortb-3.0.6+dfsg/bio-tools-psort-svmloc/fre_patterns.txt:38300: AFE ==> SAFE
data/psortb-3.0.6+dfsg/bio-tools-psort-svmloc/fre_patterns.txt:38384: AFER ==> AFTER
data/psortb-3.0.6+dfsg/bio-tools-psort-svmloc/fre_patterns.txt:38655: ADN ==> AND
data/psortb-3.0.6+dfsg/bio-tools-psort-svmloc/fre_patterns.txt:38778: ADGE ==> EDGE, BADGE, ADAGE
data/psortb-3.0.6+dfsg/bio-tools-psort-svmloc/fre_patterns.txt:38816: ADDD ==> ADD
data/psortb-3.0.6+dfsg/bio-tools-psort-svmloc/fre_patterns.txt:38857: ACI ==> ACPI
data/psortb-3.0.6+dfsg/bio-tools-psort-svmloc/fre_patterns.txt:38861: ACN ==> CAN, ACNE
data/psortb-3.0.6+dfsg/bio-tools-psort-svmloc/fre_patterns.txt:38968: AARE ==> ARE
data/psortb-3.0.6+dfsg/bio-tools-psort-svmloc/fre_patterns.txt:39171: AADD ==> ADD
data/psortb-3.0.6+dfsg/psort/conf/analysis/motif/gramneg/motifs.txt:3: ND ==> AND, 2ND
data/psortb-3.0.6+dfsg/psort/conf/analysis/signal/archaea/model.hmm:4: ALPH ==> ALPHA
data/psortb-3.0.6+dfsg/psort/conf/analysis/signal/grampos/model.hmm:4: ALPH ==> ALPHA
data/psortb-3.0.6+dfsg/psort/conf/analysis/signal/gramneg/model.hmm:4: ALPH ==> ALPHA
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/archaea/Membrane/fre_patterns.txt:325: FWE ==> FEW
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/archaea/Membrane/fre_patterns.txt:872: FPR ==> FOR, FAR, FPS
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/archaea/Membrane/fre_patterns.txt:1091: FALG ==> FLAG
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/archaea/Membrane/fre_patterns.txt:1093: FALT ==> FAULT
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/archaea/Membrane/fre_patterns.txt:1370: FLE ==> FILE
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/archaea/Membrane/fre_patterns.txt:1731: FILS ==> FILLS, FILES, FILE
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/archaea/Membrane/fre_patterns.txt:2046: HVE ==> HAVE
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/archaea/Membrane/fre_patterns.txt:2071: HSA ==> HAS
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/archaea/Membrane/fre_patterns.txt:2078: HSI ==> HIS
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/archaea/Membrane/fre_patterns.txt:2098: HDA ==> HAD
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/archaea/Membrane/fre_patterns.txt:2152: HEL ==> HELP, HELL, HEAL
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/archaea/Membrane/fre_patterns.txt:2175: HAVA ==> HAVE, HAVE A
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/archaea/Membrane/fre_patterns.txt:2183: HAA ==> HAS
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/archaea/Membrane/fre_patterns.txt:2184: HALD ==> HELD
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/archaea/Membrane/fre_patterns.txt:2260: HGE ==> HE
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/archaea/Membrane/fre_patterns.txt:2320: HTE ==> THE
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/archaea/Membrane/fre_patterns.txt:2683: PTD ==> PDF
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/archaea/Membrane/fre_patterns.txt:3398: PASE ==> PASS, PACE, PARSE
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/archaea/Membrane/fre_patterns.txt:3408: PALN ==> PLAN, PAIN, PALM
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/archaea/Membrane/fre_patterns.txt:4245: DED ==> DEAD
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/archaea/Membrane/fre_patterns.txt:4658: DNE ==> DONE
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/archaea/Membrane/fre_patterns.txt:4766: DAEL ==> DEAL, DIAL, DAHL
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/archaea/Membrane/fre_patterns.txt:4804: DAA ==> DATA
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/archaea/Membrane/fre_patterns.txt:5130: DIDI ==> DID
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/archaea/Membrane/fre_patterns.txt:5175: DIEA ==> IDEA, DIE
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/archaea/Membrane/fre_patterns.txt:5492: RADE ==> READ, RAID
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/archaea/Membrane/fre_patterns.txt:6625: ECT ==> ETC
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/archaea/Membrane/fre_patterns.txt:6664: EHR ==> HER
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/archaea/Membrane/fre_patterns.txt:7139: EGE ==> EDGE
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/archaea/Membrane/fre_patterns.txt:7250: EDN ==> END
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/archaea/Membrane/fre_patterns.txt:7280: EDE ==> EDGE
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/archaea/Membrane/fre_patterns.txt:7482: EYT ==> YET
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/archaea/Membrane/fre_patterns.txt:7550: ESY ==> EASY
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/archaea/Membrane/fre_patterns.txt:7557: ESLE ==> ELSE
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/archaea/Membrane/fre_patterns.txt:7625: ELES ==> ELSE
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/archaea/Membrane/fre_patterns.txt:8863: KAKE ==> CAKE, TAKE
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/archaea/Membrane/fre_patterns.txt:9021: KET ==> KEPT
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/archaea/Membrane/fre_patterns.txt:9474: NED ==> NEED
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/archaea/Membrane/fre_patterns.txt:9823: NIN ==> INN, MIN, BIN, NINE
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/archaea/Membrane/fre_patterns.txt:9963: NWE ==> NEW
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/archaea/Membrane/fre_patterns.txt:10306: ND ==> AND, 2ND
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/archaea/Membrane/fre_patterns.txt:11644: YHE ==> THE
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/archaea/Membrane/fre_patterns.txt:11908: YSE ==> YES, USE, NYSE
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/archaea/Membrane/fre_patterns.txt:12521: SMAL ==> SMALL
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/archaea/Membrane/fre_patterns.txt:12537: SMLL ==> SMALL, SMELL
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/archaea/Membrane/fre_patterns.txt:12673: STIL ==> STILL
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/archaea/Membrane/fre_patterns.txt:12850: SIE ==> SIZE, SIGH
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/archaea/Membrane/fre_patterns.txt:12931: SISE ==> SIZE, SISAL
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/archaea/Membrane/fre_patterns.txt:14028: SVAE ==> SAVE
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/archaea/Membrane/fre_patterns.txt:14078: SADE ==> SAD
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/archaea/Membrane/fre_patterns.txt:14126: SAIS ==> SAYS
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/archaea/Membrane/fre_patterns.txt:14155: SAV ==> SAVE
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/archaea/Membrane/fre_patterns.txt:14263: SASY ==> SAYS, SASSY
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/archaea/Membrane/fre_patterns.txt:14280: SEH ==> SHE
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/archaea/Membrane/fre_patterns.txt:14333: SELV ==> SELF
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/archaea/Membrane/fre_patterns.txt:14335: SELT ==> SET, SELF, SOLD
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/archaea/Membrane/fre_patterns.txt:14352: SER ==> SET
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/archaea/Membrane/fre_patterns.txt:14906: IWLL ==> WILL
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/archaea/Membrane/fre_patterns.txt:14932: IHS ==> HIS
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/archaea/Membrane/fre_patterns.txt:15902: ISTS ==> ITS, LISTS
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/archaea/Membrane/fre_patterns.txt:15907: IST ==> IS, IT, ITS, IT'S, SIT, LIST
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/archaea/Membrane/fre_patterns.txt:16606: IIF ==> IF
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/archaea/Membrane/fre_patterns.txt:17246: TYE ==> TYPE, TIE
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/archaea/Membrane/fre_patterns.txt:17289: THW ==> THE, THAW
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/archaea/Membrane/fre_patterns.txt:17291: THA ==> THAN, THAT, THE
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/archaea/Membrane/fre_patterns.txt:17294: THQ ==> THE
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/archaea/Membrane/fre_patterns.txt:17297: THN ==> THEN
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/archaea/Membrane/fre_patterns.txt:17303: THS ==> THE, THIS
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/archaea/Membrane/fre_patterns.txt:17305: THI ==> THE, THIS
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/archaea/Membrane/fre_patterns.txt:17307: THT ==> THE, THAT
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/archaea/Membrane/fre_patterns.txt:17585: TRE ==> TREE
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/archaea/Membrane/fre_patterns.txt:17620: TEH ==> THE
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/archaea/Membrane/fre_patterns.txt:17655: TEY ==> THEY
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/archaea/Membrane/fre_patterns.txt:17683: TE ==> THE, BE, WE
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/archaea/Membrane/fre_patterns.txt:17921: TAST ==> TASTE
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/archaea/Membrane/fre_patterns.txt:17997: TAGE ==> STAGE, TAKE, TAG, TAGGED
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/archaea/Membrane/fre_patterns.txt:18807: ACN ==> CAN, ACNE
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/archaea/Membrane/fre_patterns.txt:18831: ACI ==> ACPI
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/archaea/Membrane/fre_patterns.txt:19017: AFE ==> SAFE
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/archaea/Membrane/fre_patterns.txt:19305: ARRE ==> ARE
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/archaea/Membrane/fre_patterns.txt:19484: ADN ==> AND
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/archaea/Membrane/fre_patterns.txt:19820: AKSS ==> ASKS, ASS
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/archaea/Membrane/fre_patterns.txt:19825: AKS ==> ASK
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/archaea/Membrane/fre_patterns.txt:19893: AKE ==> ACHE
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/archaea/Membrane/fre_patterns.txt:19976: AARE ==> ARE
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/archaea/Membrane/fre_patterns.txt:20136: AADD ==> ADD
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/archaea/Membrane/fre_patterns.txt:20826: AGRE ==> AGREE
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/archaea/Membrane/fre_patterns.txt:20879: AGIN ==> AGAIN
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/archaea/Membrane/fre_patterns.txt:20989: ATLL ==> ALL
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/archaea/Membrane/fre_patterns.txt:21309: ALSE ==> ALSO, ELSE, FALSE
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/archaea/Membrane/fre_patterns.txt:21327: ALS ==> ALSO
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/archaea/Membrane/fre_patterns.txt:21339: ALLS ==> ALL, FALLS
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/archaea/Membrane/fre_patterns.txt:21340: ALLE ==> ALL, ALLEY
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/archaea/Membrane/fre_patterns.txt:21384: ALLK ==> ALL
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/archaea/Membrane/fre_patterns.txt:21531: ANE ==> AND
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/archaea/Membrane/fre_patterns.txt:21552: ANS ==> AND
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/archaea/Membrane/fre_patterns.txt:21672: ASII ==> ASCII
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/archaea/Membrane/fre_patterns.txt:21724: ASKE ==> ASK
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/archaea/Membrane/fre_patterns.txt:21804: ASAI ==> ASIA
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/archaea/Membrane/fre_patterns.txt:22435: VAVE ==> HAVE, VALVE
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/archaea/Membrane/fre_patterns.txt:22590: VAS ==> WAS
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/archaea/Membrane/fre_patterns.txt:23937: VEW ==> VIEW
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/archaea/Membrane/fre_patterns.txt:24042: VELL ==> WELL
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/archaea/Membrane/fre_patterns.txt:24241: VIE ==> VIA
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/archaea/Membrane/fre_patterns.txt:24326: VILL ==> WILL
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/archaea/Membrane/fre_patterns.txt:24440: VISE ==> VICE
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/archaea/Membrane/fre_patterns.txt:26158: LKE ==> LIKE
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/archaea/Membrane/fre_patterns.txt:26228: LEVL ==> LEVEL
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/archaea/Membrane/fre_patterns.txt:26238: LEAS ==> LEAST, LEASE
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/archaea/Membrane/fre_patterns.txt:26985: LSIT ==> LIST, SLIT, SIT
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/archaea/Membrane/fre_patterns.txt:27022: LSAT ==> LAST, SLAT, SAT
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/archaea/Membrane/fre_patterns.txt:27826: LARG ==> LARGE
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/archaea/Membrane/fre_patterns.txt:28319: LITS ==> LIST
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/archaea/Membrane/fre_patterns.txt:28426: LIEK ==> LIKE
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/archaea/Membrane/fre_patterns.txt:28442: LIK ==> LIKE, LICK, LINK
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/archaea/Membrane/fre_patterns.txt:29138: WYA ==> WAY
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/archaea/Membrane/fre_patterns.txt:29146: WEE ==> WE
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/archaea/Membrane/fre_patterns.txt:29249: WIT ==> WITH
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/archaea/Membrane/fre_patterns.txt:29256: WIAT ==> WAIT
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/archaea/Membrane/fre_patterns.txt:29274: WIL ==> WILL, WELL
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/archaea/Membrane/fre_patterns.txt:29401: WQS ==> WAS
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/archaea/Membrane/fre_patterns.txt:29415: WHE ==> WHEN, WE
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/archaea/Membrane/fre_patterns.txt:29424: WTH ==> WITH
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/archaea/Membrane/fre_patterns.txt:29504: WAN ==> WANT
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/archaea/Membrane/fre_patterns.txt:29596: WLL ==> WILL
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/archaea/Membrane/fre_patterns.txt:30810: GARD ==> GUARD
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/archaea/Membrane/fre_patterns.txt:31476: GIR ==> GIT
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/archaea/Membrane/fre_patterns.txt:32531: MYE ==> MAY, MY
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/archaea/Membrane/fre_patterns.txt:32799: MKE ==> MAKE
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/archaea/Membrane/fre_patterns.txt:33221: MIGT ==> MIGHT, MIDGET
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/archaea/Membrane/fre_patterns.txt:33262: MIAL ==> MAIL
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/archaea/Membrane/fre_patterns.txt:33336: MAKA ==> MAKE
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/archaea/Membrane/fre_patterns.txt:33337: MAKS ==> MASK, MASKS, MAKES, MAKE
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/archaea/Membrane/fre_patterns.txt:33346: MATA ==> META, MATER
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/archaea/Cellwall/fre_patterns.txt:94: ESY ==> EASY
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/archaea/Cellwall/fre_patterns.txt:123: EDE ==> EDGE
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/archaea/Cellwall/fre_patterns.txt:137: EYT ==> YET
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/archaea/Cellwall/fre_patterns.txt:268: EGE ==> EDGE
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/archaea/Cellwall/fre_patterns.txt:541: DED ==> DEAD
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/archaea/Cellwall/fre_patterns.txt:659: DNE ==> DONE
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/archaea/Cellwall/fre_patterns.txt:767: DAA ==> DATA
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/archaea/Cellwall/fre_patterns.txt:881: PTD ==> PDF
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/archaea/Cellwall/fre_patterns.txt:1189: IST ==> IS, IT, ITS, IT'S, SIT, LIST
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/archaea/Cellwall/fre_patterns.txt:1447: VIE ==> VIA
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/archaea/Cellwall/fre_patterns.txt:1537: VAS ==> WAS
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/archaea/Cellwall/fre_patterns.txt:1567: LIK ==> LIKE, LICK, LINK
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/archaea/Cellwall/fre_patterns.txt:1763: LKE ==> LIKE
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/archaea/Cellwall/fre_patterns.txt:1880: THT ==> THE, THAT
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/archaea/Cellwall/fre_patterns.txt:1881: THS ==> THE, THIS
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/archaea/Cellwall/fre_patterns.txt:1946: TYE ==> TYPE, TIE
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/archaea/Cellwall/fre_patterns.txt:1989: TKAE ==> TAKE
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/archaea/Cellwall/fre_patterns.txt:2039: TRE ==> TREE
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/archaea/Cellwall/fre_patterns.txt:2058: TEY ==> THEY
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/archaea/Cellwall/fre_patterns.txt:2068: TE ==> THE, BE, WE
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/archaea/Cellwall/fre_patterns.txt:2303: SIE ==> SIZE, SIGH
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/archaea/Cellwall/fre_patterns.txt:2418: SER ==> SET
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/archaea/Cellwall/fre_patterns.txt:2509: SAV ==> SAVE
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/archaea/Cellwall/fre_patterns.txt:2525: FLE ==> FILE
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/archaea/Cellwall/fre_patterns.txt:2987: GIR ==> GIT
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/archaea/Cellwall/fre_patterns.txt:3089: NIN ==> INN, MIN, BIN, NINE
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/archaea/Cellwall/fre_patterns.txt:3128: NED ==> NEED
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/archaea/Cellwall/fre_patterns.txt:3329: ND ==> AND, 2ND
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/archaea/Cellwall/fre_patterns.txt:3803: KET ==> KEPT
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/archaea/Cellwall/fre_patterns.txt:3956: ADN ==> AND
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/archaea/Cellwall/fre_patterns.txt:3988: ANE ==> AND
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/archaea/Cellwall/fre_patterns.txt:3989: ANS ==> AND
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/archaea/Cellwall/fre_patterns.txt:4093: ALS ==> ALSO
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/archaea/Cellwall/fre_patterns.txt:4223: AKS ==> ASK
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/archaea/Cellwall/fre_patterns.txt:4225: AKE ==> ACHE
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/archaea/Cellwall/fre_patterns.txt:4261: MKE ==> MAKE
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/archaea/Cytoplasmic/fre_patterns.txt:100: FLE ==> FILE
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/archaea/Cytoplasmic/fre_patterns.txt:433: TE ==> THE, BE, WE
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/archaea/Cytoplasmic/fre_patterns.txt:450: TRE ==> TREE
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/archaea/Cytoplasmic/fre_patterns.txt:657: GIR ==> GIT
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/archaea/Cytoplasmic/fre_patterns.txt:903: DED ==> DEAD
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/archaea/Cytoplasmic/fre_patterns.txt:964: DAA ==> DATA
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/archaea/Cytoplasmic/fre_patterns.txt:1019: LIK ==> LIKE, LICK, LINK
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/archaea/Cytoplasmic/fre_patterns.txt:1150: LKE ==> LIKE
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/archaea/Cytoplasmic/fre_patterns.txt:1284: SER ==> SET
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/archaea/Cytoplasmic/fre_patterns.txt:1299: SIE ==> SIZE, SIGH
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/archaea/Cytoplasmic/fre_patterns.txt:1323: SAV ==> SAVE
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/archaea/Cytoplasmic/fre_patterns.txt:1350: ND ==> AND, 2ND
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/archaea/Cytoplasmic/fre_patterns.txt:1676: KET ==> KEPT
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/archaea/Cytoplasmic/fre_patterns.txt:1765: EGE ==> EDGE
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/archaea/Cytoplasmic/fre_patterns.txt:1807: EDE ==> EDGE
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/archaea/Cytoplasmic/fre_patterns.txt:2049: VIE ==> VIA
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/archaea/Cytoplasmic/fre_patterns.txt:2059: VAS ==> WAS
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/archaea/Cytoplasmic/fre_patterns.txt:2175: ANS ==> AND
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/archaea/Cytoplasmic/fre_patterns.txt:2182: ANE ==> AND
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/archaea/Cytoplasmic/fre_patterns.txt:2200: ALS ==> ALSO
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/archaea/Cytoplasmic/fre_patterns.txt:2233: AFE ==> SAFE
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/archaea/Cytoplasmic/fre_patterns.txt:2243: AKS ==> ASK
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/archaea/Cytoplasmic/fre_patterns.txt:2251: AKE ==> ACHE
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/archaea/Extracellular/fre_patterns.txt:42: EDE ==> EDGE
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/archaea/Extracellular/fre_patterns.txt:47: EDN ==> END
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/archaea/Extracellular/fre_patterns.txt:59: EYT ==> YET
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/archaea/Extracellular/fre_patterns.txt:269: WAN ==> WANT
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/archaea/Extracellular/fre_patterns.txt:291: FLE ==> FILE
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/archaea/Extracellular/fre_patterns.txt:819: GIR ==> GIT
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/archaea/Extracellular/fre_patterns.txt:962: SER ==> SET
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/archaea/Extracellular/fre_patterns.txt:1089: SAV ==> SAVE
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/archaea/Extracellular/fre_patterns.txt:1386: THA ==> THAN, THAT, THE
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/archaea/Extracellular/fre_patterns.txt:1417: TEY ==> THEY
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/archaea/Extracellular/fre_patterns.txt:1431: TE ==> THE, BE, WE
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/archaea/Extracellular/fre_patterns.txt:1573: HEL ==> HELP, HELL, HEAL
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/archaea/Extracellular/fre_patterns.txt:1591: HAA ==> HAS
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/archaea/Extracellular/fre_patterns.txt:1626: KET ==> KEPT
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/archaea/Extracellular/fre_patterns.txt:1915: VAS ==> WAS
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/archaea/Extracellular/fre_patterns.txt:1962: VIE ==> VIA
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/archaea/Extracellular/fre_patterns.txt:2115: NED ==> NEED
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/archaea/Extracellular/fre_patterns.txt:2156: NIN ==> INN, MIN, BIN, NINE
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/archaea/Extracellular/fre_patterns.txt:2203: ND ==> AND, 2ND
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/archaea/Extracellular/fre_patterns.txt:2336: LKE ==> LIKE
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/archaea/Extracellular/fre_patterns.txt:2453: LIK ==> LIKE, LICK, LINK
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/archaea/Extracellular/fre_patterns.txt:2667: IST ==> IS, IT, ITS, IT'S, SIT, LIST
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/archaea/Extracellular/fre_patterns.txt:2759: DED ==> DEAD
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/archaea/Extracellular/fre_patterns.txt:2938: DAA ==> DATA
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/archaea/Extracellular/fre_patterns.txt:3025: PTD ==> PDF
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/archaea/Extracellular/fre_patterns.txt:3151: AFE ==> SAFE
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/archaea/Extracellular/fre_patterns.txt:3173: ADN ==> AND
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/archaea/Extracellular/fre_patterns.txt:3211: ALS ==> ALSO
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/archaea/Extracellular/fre_patterns.txt:3294: AKE ==> ACHE
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/archaea/Extracellular/fre_patterns.txt:3295: AKS ==> ASK
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/archaea/Extracellular/fre_patterns.txt:3353: ANE ==> AND
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/archaea/Extracellular/fre_patterns.txt:3361: ANS ==> AND
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/grampos/Membrane/fre_patterns.txt:324: FWE ==> FEW
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/grampos/Membrane/fre_patterns.txt:854: FPR ==> FOR, FAR, FPS
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/grampos/Membrane/fre_patterns.txt:1068: FALG ==> FLAG
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/grampos/Membrane/fre_patterns.txt:1070: FALT ==> FAULT
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/grampos/Membrane/fre_patterns.txt:1338: FLE ==> FILE
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/grampos/Membrane/fre_patterns.txt:1687: FILS ==> FILLS, FILES, FILE
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/grampos/Membrane/fre_patterns.txt:1995: HVE ==> HAVE
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/grampos/Membrane/fre_patterns.txt:2020: HSA ==> HAS
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/grampos/Membrane/fre_patterns.txt:2027: HSI ==> HIS
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/grampos/Membrane/fre_patterns.txt:2045: HDA ==> HAD
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/grampos/Membrane/fre_patterns.txt:2102: HEL ==> HELP, HELL, HEAL
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/grampos/Membrane/fre_patterns.txt:2126: HAVA ==> HAVE, HAVE A
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/grampos/Membrane/fre_patterns.txt:2134: HAA ==> HAS
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/grampos/Membrane/fre_patterns.txt:2135: HALD ==> HELD
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/grampos/Membrane/fre_patterns.txt:2211: HGE ==> HE
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/grampos/Membrane/fre_patterns.txt:2271: HTE ==> THE
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/grampos/Membrane/fre_patterns.txt:2622: PTD ==> PDF
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/grampos/Membrane/fre_patterns.txt:3304: PASE ==> PASS, PACE, PARSE
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/grampos/Membrane/fre_patterns.txt:3314: PALN ==> PLAN, PAIN, PALM
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/grampos/Membrane/fre_patterns.txt:4147: DED ==> DEAD
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/grampos/Membrane/fre_patterns.txt:4556: DNE ==> DONE
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/grampos/Membrane/fre_patterns.txt:4660: DAEL ==> DEAL, DIAL, DAHL
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/grampos/Membrane/fre_patterns.txt:4696: DAA ==> DATA
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/grampos/Membrane/fre_patterns.txt:5005: DIDI ==> DID
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/grampos/Membrane/fre_patterns.txt:5048: DIEA ==> IDEA, DIE
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/grampos/Membrane/fre_patterns.txt:5363: RADE ==> READ, RAID
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/grampos/Membrane/fre_patterns.txt:6487: ECT ==> ETC
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/grampos/Membrane/fre_patterns.txt:6528: EHR ==> HER
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/grampos/Membrane/fre_patterns.txt:7014: EGE ==> EDGE
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/grampos/Membrane/fre_patterns.txt:7126: EDN ==> END
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/grampos/Membrane/fre_patterns.txt:7158: EDE ==> EDGE
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/grampos/Membrane/fre_patterns.txt:7363: EYT ==> YET
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/grampos/Membrane/fre_patterns.txt:7432: ESY ==> EASY
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/grampos/Membrane/fre_patterns.txt:7437: ESLE ==> ELSE
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/grampos/Membrane/fre_patterns.txt:7508: ELES ==> ELSE
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/grampos/Membrane/fre_patterns.txt:8766: KAKE ==> CAKE, TAKE
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/grampos/Membrane/fre_patterns.txt:8924: KET ==> KEPT
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/grampos/Membrane/fre_patterns.txt:9381: NED ==> NEED
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/grampos/Membrane/fre_patterns.txt:9755: NIN ==> INN, MIN, BIN, NINE
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/grampos/Membrane/fre_patterns.txt:9858: NWE ==> NEW
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/grampos/Membrane/fre_patterns.txt:10203: ND ==> AND, 2ND
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/grampos/Membrane/fre_patterns.txt:11542: YHE ==> THE
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/grampos/Membrane/fre_patterns.txt:11834: YSE ==> YES, USE, NYSE
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/grampos/Membrane/fre_patterns.txt:12402: SMAL ==> SMALL
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/grampos/Membrane/fre_patterns.txt:12418: SMLL ==> SMALL, SMELL
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/grampos/Membrane/fre_patterns.txt:12547: STIL ==> STILL
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/grampos/Membrane/fre_patterns.txt:12721: SIE ==> SIZE, SIGH
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/grampos/Membrane/fre_patterns.txt:12804: SISE ==> SIZE, SISAL
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/grampos/Membrane/fre_patterns.txt:13887: SVAE ==> SAVE
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/grampos/Membrane/fre_patterns.txt:13971: SAIS ==> SAYS
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/grampos/Membrane/fre_patterns.txt:14000: SAV ==> SAVE
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/grampos/Membrane/fre_patterns.txt:14118: SASY ==> SAYS, SASSY
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/grampos/Membrane/fre_patterns.txt:14133: SEH ==> SHE
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/grampos/Membrane/fre_patterns.txt:14185: SELV ==> SELF
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/grampos/Membrane/fre_patterns.txt:14202: SER ==> SET
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/grampos/Membrane/fre_patterns.txt:14741: IWLL ==> WILL
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/grampos/Membrane/fre_patterns.txt:14767: IHS ==> HIS
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/grampos/Membrane/fre_patterns.txt:15719: ISTS ==> ITS, LISTS
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/grampos/Membrane/fre_patterns.txt:15724: IST ==> IS, IT, ITS, IT'S, SIT, LIST
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/grampos/Membrane/fre_patterns.txt:15882: INES ==> LINES
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/grampos/Membrane/fre_patterns.txt:16400: IIF ==> IF
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/grampos/Membrane/fre_patterns.txt:17021: TYE ==> TYPE, TIE
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/grampos/Membrane/fre_patterns.txt:17059: THW ==> THE, THAW
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/grampos/Membrane/fre_patterns.txt:17061: THA ==> THAN, THAT, THE
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/grampos/Membrane/fre_patterns.txt:17064: THQ ==> THE
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/grampos/Membrane/fre_patterns.txt:17067: THN ==> THEN
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/grampos/Membrane/fre_patterns.txt:17073: THS ==> THE, THIS
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/grampos/Membrane/fre_patterns.txt:17075: THI ==> THE, THIS
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/grampos/Membrane/fre_patterns.txt:17077: THT ==> THE, THAT
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/grampos/Membrane/fre_patterns.txt:17111: TKAE ==> TAKE
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/grampos/Membrane/fre_patterns.txt:17350: TRE ==> TREE
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/grampos/Membrane/fre_patterns.txt:17384: TEH ==> THE
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/grampos/Membrane/fre_patterns.txt:17415: TEY ==> THEY
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/grampos/Membrane/fre_patterns.txt:17450: TE ==> THE, BE, WE
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/grampos/Membrane/fre_patterns.txt:17677: TAST ==> TASTE
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/grampos/Membrane/fre_patterns.txt:17748: TAGE ==> STAGE, TAKE, TAG, TAGGED
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/grampos/Membrane/fre_patterns.txt:18539: ACN ==> CAN, ACNE
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/grampos/Membrane/fre_patterns.txt:18563: ACI ==> ACPI
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/grampos/Membrane/fre_patterns.txt:18743: AFE ==> SAFE
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/grampos/Membrane/fre_patterns.txt:19025: ARRE ==> ARE
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/grampos/Membrane/fre_patterns.txt:19192: ADN ==> AND
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/grampos/Membrane/fre_patterns.txt:19502: AKSS ==> ASKS, ASS
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/grampos/Membrane/fre_patterns.txt:19505: AKS ==> ASK
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/grampos/Membrane/fre_patterns.txt:19591: AKE ==> ACHE
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/grampos/Membrane/fre_patterns.txt:19672: AARE ==> ARE
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/grampos/Membrane/fre_patterns.txt:20510: AGRE ==> AGREE
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/grampos/Membrane/fre_patterns.txt:20562: AGIN ==> AGAIN
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/grampos/Membrane/fre_patterns.txt:20668: ATLL ==> ALL
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/grampos/Membrane/fre_patterns.txt:20974: ALSE ==> ALSO, ELSE, FALSE
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/grampos/Membrane/fre_patterns.txt:20991: ALS ==> ALSO
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/grampos/Membrane/fre_patterns.txt:21002: ALLS ==> ALL, FALLS
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/grampos/Membrane/fre_patterns.txt:21003: ALLE ==> ALL, ALLEY
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/grampos/Membrane/fre_patterns.txt:21046: ALLK ==> ALL
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/grampos/Membrane/fre_patterns.txt:21190: ANE ==> AND
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/grampos/Membrane/fre_patterns.txt:21210: ANS ==> AND
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/grampos/Membrane/fre_patterns.txt:21332: ASII ==> ASCII
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/grampos/Membrane/fre_patterns.txt:21384: ASKE ==> ASK
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/grampos/Membrane/fre_patterns.txt:21459: ASAI ==> ASIA
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/grampos/Membrane/fre_patterns.txt:22102: VAVE ==> HAVE, VALVE
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/grampos/Membrane/fre_patterns.txt:22234: VAS ==> WAS
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/grampos/Membrane/fre_patterns.txt:23540: VEW ==> VIEW
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/grampos/Membrane/fre_patterns.txt:23641: VELL ==> WELL
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/grampos/Membrane/fre_patterns.txt:23835: VIE ==> VIA
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/grampos/Membrane/fre_patterns.txt:23932: VILL ==> WILL
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/grampos/Membrane/fre_patterns.txt:25697: LKE ==> LIKE
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/grampos/Membrane/fre_patterns.txt:25767: LEVL ==> LEVEL
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/grampos/Membrane/fre_patterns.txt:25778: LEAS ==> LEAST, LEASE
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/grampos/Membrane/fre_patterns.txt:26518: LSIT ==> LIST, SLIT, SIT
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/grampos/Membrane/fre_patterns.txt:26554: LSAT ==> LAST, SLAT, SAT
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/grampos/Membrane/fre_patterns.txt:27354: LARG ==> LARGE
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/grampos/Membrane/fre_patterns.txt:27796: LITS ==> LIST
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/grampos/Membrane/fre_patterns.txt:27943: LIEK ==> LIKE
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/grampos/Membrane/fre_patterns.txt:27959: LIK ==> LIKE, LICK, LINK
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/grampos/Membrane/fre_patterns.txt:28635: WYA ==> WAY
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/grampos/Membrane/fre_patterns.txt:28643: WEE ==> WE
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/grampos/Membrane/fre_patterns.txt:28746: WIT ==> WITH
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/grampos/Membrane/fre_patterns.txt:28753: WIAT ==> WAIT
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/grampos/Membrane/fre_patterns.txt:28769: WIL ==> WILL, WELL
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/grampos/Membrane/fre_patterns.txt:28892: WQS ==> WAS
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/grampos/Membrane/fre_patterns.txt:28906: WHE ==> WHEN, WE
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/grampos/Membrane/fre_patterns.txt:28915: WTH ==> WITH
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/grampos/Membrane/fre_patterns.txt:28991: WAN ==> WANT
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/grampos/Membrane/fre_patterns.txt:29076: WLL ==> WILL
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/grampos/Membrane/fre_patterns.txt:30262: GARD ==> GUARD
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/grampos/Membrane/fre_patterns.txt:30899: GIR ==> GIT
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/grampos/Membrane/fre_patterns.txt:31910: MYE ==> MAY, MY
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/grampos/Membrane/fre_patterns.txt:32171: MKE ==> MAKE
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/grampos/Membrane/fre_patterns.txt:32621: MIAL ==> MAIL
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/grampos/Membrane/fre_patterns.txt:32701: MATA ==> META, MATER
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/grampos/Membrane/fre_patterns.txt:32742: MAKS ==> MASK, MASKS, MAKES, MAKE
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/grampos/Membrane/fre_patterns.txt:32745: MAKA ==> MAKE
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/grampos/Cellwall/fre_patterns.txt:29: HTE ==> THE
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/grampos/Cellwall/fre_patterns.txt:168: ESY ==> EASY
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/grampos/Cellwall/fre_patterns.txt:206: EDN ==> END
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/grampos/Cellwall/fre_patterns.txt:212: EDE ==> EDGE
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/grampos/Cellwall/fre_patterns.txt:232: EYT ==> YET
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/grampos/Cellwall/fre_patterns.txt:424: EGE ==> EDGE
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/grampos/Cellwall/fre_patterns.txt:797: DED ==> DEAD
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/grampos/Cellwall/fre_patterns.txt:967: DNE ==> DONE
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/grampos/Cellwall/fre_patterns.txt:1136: DAA ==> DATA
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/grampos/Cellwall/fre_patterns.txt:1283: PTD ==> PDF
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/grampos/Cellwall/fre_patterns.txt:1465: IHS ==> HIS
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/grampos/Cellwall/fre_patterns.txt:1716: IST ==> IS, IT, ITS, IT'S, SIT, LIST
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/grampos/Cellwall/fre_patterns.txt:2103: VIE ==> VIA
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/grampos/Cellwall/fre_patterns.txt:2226: VAS ==> WAS
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/grampos/Cellwall/fre_patterns.txt:2272: LIK ==> LIKE, LICK, LINK
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/grampos/Cellwall/fre_patterns.txt:2450: LSAT ==> LAST, SLAT, SAT
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/grampos/Cellwall/fre_patterns.txt:2561: LKE ==> LIKE
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/grampos/Cellwall/fre_patterns.txt:2743: THN ==> THEN
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/grampos/Cellwall/fre_patterns.txt:2745: THT ==> THE, THAT
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/grampos/Cellwall/fre_patterns.txt:2746: THS ==> THE, THIS
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/grampos/Cellwall/fre_patterns.txt:2851: TYE ==> TYPE, TIE
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/grampos/Cellwall/fre_patterns.txt:2914: TKAE ==> TAKE
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/grampos/Cellwall/fre_patterns.txt:2993: TRE ==> TREE
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/grampos/Cellwall/fre_patterns.txt:3023: TEY ==> THEY
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/grampos/Cellwall/fre_patterns.txt:3038: TE ==> THE, BE, WE
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/grampos/Cellwall/fre_patterns.txt:3183: TAST ==> TASTE
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/grampos/Cellwall/fre_patterns.txt:3410: SIE ==> SIZE, SIGH
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/grampos/Cellwall/fre_patterns.txt:3589: SER ==> SET
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/grampos/Cellwall/fre_patterns.txt:3730: SAV ==> SAVE
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/grampos/Cellwall/fre_patterns.txt:3758: FLE ==> FILE
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/grampos/Cellwall/fre_patterns.txt:4400: GIR ==> GIT
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/grampos/Cellwall/fre_patterns.txt:4545: NIN ==> INN, MIN, BIN, NINE
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/grampos/Cellwall/fre_patterns.txt:4600: NED ==> NEED
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/grampos/Cellwall/fre_patterns.txt:4604: NEAD ==> NEED
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/grampos/Cellwall/fre_patterns.txt:4929: ND ==> AND, 2ND
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/grampos/Cellwall/fre_patterns.txt:5541: KAKE ==> CAKE, TAKE
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/grampos/Cellwall/fre_patterns.txt:5664: KET ==> KEPT
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/grampos/Cellwall/fre_patterns.txt:5816: AFE ==> SAFE
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/grampos/Cellwall/fre_patterns.txt:5880: ADN ==> AND
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/grampos/Cellwall/fre_patterns.txt:5922: ANE ==> AND
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/grampos/Cellwall/fre_patterns.txt:5926: ANS ==> AND
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/grampos/Cellwall/fre_patterns.txt:6083: ALS ==> ALSO
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/grampos/Cellwall/fre_patterns.txt:6188: ASAI ==> ASIA
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/grampos/Cellwall/fre_patterns.txt:6297: AKS ==> ASK
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/grampos/Cellwall/fre_patterns.txt:6301: AKE ==> ACHE
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/grampos/Cellwall/fre_patterns.txt:6356: MKE ==> MAKE
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/grampos/Cytoplasmic/fre_patterns.txt:87: YSE ==> YES, USE, NYSE
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/grampos/Cytoplasmic/fre_patterns.txt:383: WLL ==> WILL
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/grampos/Cytoplasmic/fre_patterns.txt:398: WIT ==> WITH
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/grampos/Cytoplasmic/fre_patterns.txt:772: VIE ==> VIA
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/grampos/Cytoplasmic/fre_patterns.txt:964: VAS ==> WAS
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/grampos/Cytoplasmic/fre_patterns.txt:970: VAVE ==> HAVE, VALVE
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/grampos/Cytoplasmic/fre_patterns.txt:998: TE ==> THE, BE, WE
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/grampos/Cytoplasmic/fre_patterns.txt:1017: TYE ==> TYPE, TIE
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/grampos/Cytoplasmic/fre_patterns.txt:1107: TRE ==> TREE
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/grampos/Cytoplasmic/fre_patterns.txt:1281: THA ==> THAN, THAT, THE
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/grampos/Cytoplasmic/fre_patterns.txt:1286: THI ==> THE, THIS
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/grampos/Cytoplasmic/fre_patterns.txt:1290: THS ==> THE, THIS
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/grampos/Cytoplasmic/fre_patterns.txt:1348: TEH ==> THE
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/grampos/Cytoplasmic/fre_patterns.txt:1361: TEY ==> THEY
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/grampos/Cytoplasmic/fre_patterns.txt:1694: SIE ==> SIZE, SIGH
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/grampos/Cytoplasmic/fre_patterns.txt:1786: SEH ==> SHE
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/grampos/Cytoplasmic/fre_patterns.txt:1794: SER ==> SET
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/grampos/Cytoplasmic/fre_patterns.txt:1799: SEVE ==> SAVE, SIEVE
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/grampos/Cytoplasmic/fre_patterns.txt:1851: SAV ==> SAVE
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/grampos/Cytoplasmic/fre_patterns.txt:2649: PTD ==> PDF
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/grampos/Cytoplasmic/fre_patterns.txt:2943: ND ==> AND, 2ND
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/grampos/Cytoplasmic/fre_patterns.txt:2976: NWE ==> NEW
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/grampos/Cytoplasmic/fre_patterns.txt:3161: NIN ==> INN, MIN, BIN, NINE
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/grampos/Cytoplasmic/fre_patterns.txt:3228: NED ==> NEED
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/grampos/Cytoplasmic/fre_patterns.txt:3432: MKE ==> MAKE
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/grampos/Cytoplasmic/fre_patterns.txt:3912: LKE ==> LIKE
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/grampos/Cytoplasmic/fre_patterns.txt:3971: LIK ==> LIKE, LICK, LINK
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/grampos/Cytoplasmic/fre_patterns.txt:3996: LIEK ==> LIKE
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/grampos/Cytoplasmic/fre_patterns.txt:4675: KET ==> KEPT
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/grampos/Cytoplasmic/fre_patterns.txt:4763: KAKE ==> CAKE, TAKE
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/grampos/Cytoplasmic/fre_patterns.txt:4884: IST ==> IS, IT, ITS, IT'S, SIT, LIST
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/grampos/Cytoplasmic/fre_patterns.txt:5065: IIF ==> IF
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/grampos/Cytoplasmic/fre_patterns.txt:5308: HVE ==> HAVE
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/grampos/Cytoplasmic/fre_patterns.txt:5323: HTE ==> THE
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/grampos/Cytoplasmic/fre_patterns.txt:5334: HSA ==> HAS
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/grampos/Cytoplasmic/fre_patterns.txt:5428: HGE ==> HE
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/grampos/Cytoplasmic/fre_patterns.txt:5459: HEL ==> HELP, HELL, HEAL
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/grampos/Cytoplasmic/fre_patterns.txt:5464: HDA ==> HAD
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/grampos/Cytoplasmic/fre_patterns.txt:5480: HAA ==> HAS
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/grampos/Cytoplasmic/fre_patterns.txt:5860: GIR ==> GIT
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/grampos/Cytoplasmic/fre_patterns.txt:6120: FWE ==> FEW
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/grampos/Cytoplasmic/fre_patterns.txt:6220: FPR ==> FOR, FAR, FPS
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/grampos/Cytoplasmic/fre_patterns.txt:6252: FLE ==> FILE
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/grampos/Cytoplasmic/fre_patterns.txt:6271: FLIE ==> FILE
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/grampos/Cytoplasmic/fre_patterns.txt:6467: EYT ==> YET
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/grampos/Cytoplasmic/fre_patterns.txt:6575: ESY ==> EASY
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/grampos/Cytoplasmic/fre_patterns.txt:6578: ESGE ==> EDGE
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/grampos/Cytoplasmic/fre_patterns.txt:6866: EHR ==> HER
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/grampos/Cytoplasmic/fre_patterns.txt:6873: EGE ==> EDGE
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/grampos/Cytoplasmic/fre_patterns.txt:6986: EDE ==> EDGE
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/grampos/Cytoplasmic/fre_patterns.txt:6993: EDN ==> END
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/grampos/Cytoplasmic/fre_patterns.txt:7014: ECT ==> ETC
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/grampos/Cytoplasmic/fre_patterns.txt:7188: DNE ==> DONE
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/grampos/Cytoplasmic/fre_patterns.txt:7400: DED ==> DEAD
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/grampos/Cytoplasmic/fre_patterns.txt:7468: DAA ==> DATA
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/grampos/Cytoplasmic/fre_patterns.txt:7665: ATLL ==> ALL
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/grampos/Cytoplasmic/fre_patterns.txt:7778: ANE ==> AND
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/grampos/Cytoplasmic/fre_patterns.txt:7790: ANS ==> AND
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/grampos/Cytoplasmic/fre_patterns.txt:7835: ALS ==> ALSO
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/grampos/Cytoplasmic/fre_patterns.txt:7854: ALLE ==> ALL, ALLEY
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/grampos/Cytoplasmic/fre_patterns.txt:7856: ALLK ==> ALL
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/grampos/Cytoplasmic/fre_patterns.txt:7888: AKE ==> ACHE
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/grampos/Cytoplasmic/fre_patterns.txt:7900: AKS ==> ASK
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/grampos/Cytoplasmic/fre_patterns.txt:8039: AFE ==> SAFE
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/grampos/Cytoplasmic/fre_patterns.txt:8112: ADN ==> AND
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/grampos/Extracellular/fre_patterns.txt:309: ECT ==> ETC
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/grampos/Extracellular/fre_patterns.txt:500: EHR ==> HER
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/grampos/Extracellular/fre_patterns.txt:697: EDE ==> EDGE
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/grampos/Extracellular/fre_patterns.txt:771: EDN ==> END
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/grampos/Extracellular/fre_patterns.txt:928: EYT ==> YET
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/grampos/Extracellular/fre_patterns.txt:1623: ESLE ==> ELSE
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/grampos/Extracellular/fre_patterns.txt:1665: ESY ==> EASY
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/grampos/Extracellular/fre_patterns.txt:1810: EGE ==> EDGE
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/grampos/Extracellular/fre_patterns.txt:2057: EITH ==> WITH
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/grampos/Extracellular/fre_patterns.txt:2749: ETST ==> TEST
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/grampos/Extracellular/fre_patterns.txt:3114: MYE ==> MAY, MY
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/grampos/Extracellular/fre_patterns.txt:3338: MKEA ==> MAKE
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/grampos/Extracellular/fre_patterns.txt:3340: MKE ==> MAKE
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/grampos/Extracellular/fre_patterns.txt:3878: WQS ==> WAS
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/grampos/Extracellular/fre_patterns.txt:4010: WEE ==> WE
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/grampos/Extracellular/fre_patterns.txt:4012: WEW ==> WE
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/grampos/Extracellular/fre_patterns.txt:4228: WYA ==> WAY
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/grampos/Extracellular/fre_patterns.txt:4282: WHN ==> WHEN
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/grampos/Extracellular/fre_patterns.txt:4361: WLL ==> WILL
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/grampos/Extracellular/fre_patterns.txt:4493: WASS ==> WAS
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/grampos/Extracellular/fre_patterns.txt:4514: WAN ==> WANT
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/grampos/Extracellular/fre_patterns.txt:4584: WIT ==> WITH
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/grampos/Extracellular/fre_patterns.txt:4649: WTH ==> WITH
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/grampos/Extracellular/fre_patterns.txt:5000: FLAGG ==> FLAG
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/grampos/Extracellular/fre_patterns.txt:5035: FLE ==> FILE
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/grampos/Extracellular/fre_patterns.txt:5178: FWE ==> FEW
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/grampos/Extracellular/fre_patterns.txt:5549: FPR ==> FOR, FAR, FPS
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/grampos/Extracellular/fre_patterns.txt:6495: FALT ==> FAULT
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/grampos/Extracellular/fre_patterns.txt:7493: YSE ==> YES, USE, NYSE
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/grampos/Extracellular/fre_patterns.txt:8155: YHE ==> THE
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/grampos/Extracellular/fre_patterns.txt:11240: RADE ==> READ, RAID
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/grampos/Extracellular/fre_patterns.txt:12340: GESS ==> GUESS
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/grampos/Extracellular/fre_patterns.txt:14017: GIR ==> GIT
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/grampos/Extracellular/fre_patterns.txt:15050: GRAT ==> GREAT
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/grampos/Extracellular/fre_patterns.txt:16011: SYAS ==> SAYS
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/grampos/Extracellular/fre_patterns.txt:16064: SYTLE ==> STYLE
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/grampos/Extracellular/fre_patterns.txt:16198: SMLL ==> SMALL, SMELL
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/grampos/Extracellular/fre_patterns.txt:16327: SIE ==> SIZE, SIGH
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/grampos/Extracellular/fre_patterns.txt:16551: SEH ==> SHE
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/grampos/Extracellular/fre_patterns.txt:16562: SER ==> SET
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/grampos/Extracellular/fre_patterns.txt:16700: SELT ==> SET, SELF, SOLD
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/grampos/Extracellular/fre_patterns.txt:18296: SKYP ==> SKIP, SKYPE
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/grampos/Extracellular/fre_patterns.txt:18586: SAV ==> SAVE
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/grampos/Extracellular/fre_patterns.txt:19722: SVAE ==> SAVE
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/grampos/Extracellular/fre_patterns.txt:20105: STAE ==> STATE
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/grampos/Extracellular/fre_patterns.txt:20156: STIL ==> STILL
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/grampos/Extracellular/fre_patterns.txt:22447: TRYS ==> TRIES
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/grampos/Extracellular/fre_patterns.txt:22460: TRE ==> TREE
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/grampos/Extracellular/fre_patterns.txt:23048: TYE ==> TYPE, TIE
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/grampos/Extracellular/fre_patterns.txt:23521: THI ==> THE, THIS
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/grampos/Extracellular/fre_patterns.txt:23534: THN ==> THEN
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/grampos/Extracellular/fre_patterns.txt:23557: THS ==> THE, THIS
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/grampos/Extracellular/fre_patterns.txt:23565: THW ==> THE, THAW
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/grampos/Extracellular/fre_patterns.txt:23570: THT ==> THE, THAT
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/grampos/Extracellular/fre_patterns.txt:23576: THQ ==> THE
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/grampos/Extracellular/fre_patterns.txt:23608: THA ==> THAN, THAT, THE
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/grampos/Extracellular/fre_patterns.txt:24077: TEY ==> THEY
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/grampos/Extracellular/fre_patterns.txt:24084: TEH ==> THE
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/grampos/Extracellular/fre_patterns.txt:24237: TE ==> THE, BE, WE
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/grampos/Extracellular/fre_patterns.txt:24463: TAWK ==> TALK
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/grampos/Extracellular/fre_patterns.txt:24526: TAST ==> TASTE
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/grampos/Extracellular/fre_patterns.txt:24552: TAKS ==> TASK, TASKS
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/grampos/Extracellular/fre_patterns.txt:26451: HDA ==> HAD
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/grampos/Extracellular/fre_patterns.txt:26680: HEL ==> HELP, HELL, HEAL
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/grampos/Extracellular/fre_patterns.txt:26862: HTE ==> THE
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/grampos/Extracellular/fre_patterns.txt:27042: HSI ==> HIS
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/grampos/Extracellular/fre_patterns.txt:27059: HSA ==> HAS
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/grampos/Extracellular/fre_patterns.txt:27147: HAA ==> HAS
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/grampos/Extracellular/fre_patterns.txt:27186: HGE ==> HE
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/grampos/Extracellular/fre_patterns.txt:27788: KET ==> KEPT
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/grampos/Extracellular/fre_patterns.txt:30917: KAKE ==> CAKE, TAKE
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/grampos/Extracellular/fre_patterns.txt:31567: VEW ==> VIEW
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/grampos/Extracellular/fre_patterns.txt:32465: VAS ==> WAS
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/grampos/Extracellular/fre_patterns.txt:33106: VILL ==> WILL
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/grampos/Extracellular/fre_patterns.txt:33208: VIE ==> VIA
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/grampos/Extracellular/fre_patterns.txt:35076: NANE ==> NAME
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/grampos/Extracellular/fre_patterns.txt:35495: NED ==> NEED
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/grampos/Extracellular/fre_patterns.txt:36214: NIN ==> INN, MIN, BIN, NINE
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/grampos/Extracellular/fre_patterns.txt:36901: ND ==> AND, 2ND
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/grampos/Extracellular/fre_patterns.txt:37223: NWE ==> NEW
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/grampos/Extracellular/fre_patterns.txt:39220: LKE ==> LIKE
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/grampos/Extracellular/fre_patterns.txt:40732: LEAS ==> LEAST, LEASE
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/grampos/Extracellular/fre_patterns.txt:40841: LEVL ==> LEVEL
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/grampos/Extracellular/fre_patterns.txt:40956: LIEK ==> LIKE
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/grampos/Extracellular/fre_patterns.txt:40966: LITS ==> LIST
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/grampos/Extracellular/fre_patterns.txt:41050: LIK ==> LIKE, LICK, LINK
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/grampos/Extracellular/fre_patterns.txt:41649: LSITS ==> LISTS, SLITS, SITS
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/grampos/Extracellular/fre_patterns.txt:41650: LSIT ==> LIST, SLIT, SIT
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/grampos/Extracellular/fre_patterns.txt:41758: LSAT ==> LAST, SLAT, SAT
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/grampos/Extracellular/fre_patterns.txt:42512: IHS ==> HIS
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/grampos/Extracellular/fre_patterns.txt:43031: ITEN ==> ITEM
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/grampos/Extracellular/fre_patterns.txt:43549: IIF ==> IF
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/grampos/Extracellular/fre_patterns.txt:43720: IDAE ==> IDEA
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/grampos/Extracellular/fre_patterns.txt:44305: ISTS ==> ITS, LISTS
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/grampos/Extracellular/fre_patterns.txt:44310: IST ==> IS, IT, ITS, IT'S, SIT, LIST
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/grampos/Extracellular/fre_patterns.txt:44347: ISNT ==> ISN'T
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/grampos/Extracellular/fre_patterns.txt:45576: DED ==> DEAD
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/grampos/Extracellular/fre_patterns.txt:47592: DNE ==> DONE
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/grampos/Extracellular/fre_patterns.txt:48181: DASY ==> DAISY
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/grampos/Extracellular/fre_patterns.txt:48289: DAEL ==> DEAL, DIAL, DAHL
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/grampos/Extracellular/fre_patterns.txt:48394: DAA ==> DATA
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/grampos/Extracellular/fre_patterns.txt:49135: PEGE ==> PAGE
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/grampos/Extracellular/fre_patterns.txt:49429: PARY ==> PARTY, PARRY
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/grampos/Extracellular/fre_patterns.txt:49905: PTD ==> PDF
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/grampos/Extracellular/fre_patterns.txt:50963: ACN ==> CAN, ACNE
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/grampos/Extracellular/fre_patterns.txt:50971: ACI ==> ACPI
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/grampos/Extracellular/fre_patterns.txt:51006: AMKE ==> MAKE
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/grampos/Extracellular/fre_patterns.txt:51125: ARRY ==> ARRAY, CARRY
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/grampos/Extracellular/fre_patterns.txt:51659: AFE ==> SAFE
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/grampos/Extracellular/fre_patterns.txt:51964: ADN ==> AND
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/grampos/Extracellular/fre_patterns.txt:52138: ADIN ==> ADMIN
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/grampos/Extracellular/fre_patterns.txt:52554: ALLK ==> ALL
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/grampos/Extracellular/fre_patterns.txt:52573: ALLS ==> ALL, FALLS
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/grampos/Extracellular/fre_patterns.txt:52584: ALLE ==> ALL, ALLEY
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/grampos/Extracellular/fre_patterns.txt:52589: ALSE ==> ALSO, ELSE, FALSE
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/grampos/Extracellular/fre_patterns.txt:52599: ALS ==> ALSO
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/grampos/Extracellular/fre_patterns.txt:52821: ALHA ==> ALPHA
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/grampos/Extracellular/fre_patterns.txt:53372: ATLL ==> ALL
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/grampos/Extracellular/fre_patterns.txt:53878: AGIN ==> AGAIN
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/grampos/Extracellular/fre_patterns.txt:54160: AKE ==> ACHE
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/grampos/Extracellular/fre_patterns.txt:54175: AKS ==> ASK
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/grampos/Extracellular/fre_patterns.txt:54255: ASNY ==> ANY
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/grampos/Extracellular/fre_patterns.txt:54338: ASAI ==> ASIA
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/grampos/Extracellular/fre_patterns.txt:54828: AADD ==> ADD
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/grampos/Extracellular/fre_patterns.txt:55353: ANE ==> AND
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/grampos/Extracellular/fre_patterns.txt:55449: ANDD ==> AND
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/grampos/Extracellular/fre_patterns.txt:55477: ANID ==> AND
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/grampos/Extracellular/fre_patterns.txt:55516: ANS ==> AND
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/gramneg/Periplasmic/fre_patterns.txt:152: CNA ==> CAN
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/gramneg/Periplasmic/fre_patterns.txt:344: CATCHS ==> CATCHES
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/gramneg/Periplasmic/fre_patterns.txt:483: HDA ==> HAD
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/gramneg/Periplasmic/fre_patterns.txt:665: HEL ==> HELP, HELL, HEAL
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/gramneg/Periplasmic/fre_patterns.txt:699: HSI ==> HIS
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/gramneg/Periplasmic/fre_patterns.txt:707: HSA ==> HAS
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/gramneg/Periplasmic/fre_patterns.txt:758: HGE ==> HE
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/gramneg/Periplasmic/fre_patterns.txt:811: HVE ==> HAVE
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/gramneg/Periplasmic/fre_patterns.txt:836: HTE ==> THE
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/gramneg/Periplasmic/fre_patterns.txt:885: HRLP ==> HELP
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/gramneg/Periplasmic/fre_patterns.txt:932: HALD ==> HELD
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/gramneg/Periplasmic/fre_patterns.txt:957: HAVA ==> HAVE, HAVE A
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/gramneg/Periplasmic/fre_patterns.txt:977: HAA ==> HAS
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/gramneg/Periplasmic/fre_patterns.txt:1484: RAED ==> READ
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/gramneg/Periplasmic/fre_patterns.txt:1913: REAM ==> STREAM
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/gramneg/Periplasmic/fre_patterns.txt:2385: WIL ==> WILL, WELL
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/gramneg/Periplasmic/fre_patterns.txt:2397: WIT ==> WITH
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/gramneg/Periplasmic/fre_patterns.txt:2427: WYA ==> WAY
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/gramneg/Periplasmic/fre_patterns.txt:2462: WTH ==> WITH
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/gramneg/Periplasmic/fre_patterns.txt:2559: WAN ==> WANT
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/gramneg/Periplasmic/fre_patterns.txt:2712: WQS ==> WAS
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/gramneg/Periplasmic/fre_patterns.txt:2796: WEE ==> WE
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/gramneg/Periplasmic/fre_patterns.txt:2816: WLL ==> WILL
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/gramneg/Periplasmic/fre_patterns.txt:3423: PTD ==> PDF
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/gramneg/Periplasmic/fre_patterns.txt:4582: EHR ==> HER
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/gramneg/Periplasmic/fre_patterns.txt:4588: ECT ==> ETC
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/gramneg/Periplasmic/fre_patterns.txt:4629: ETHE ==> THE
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/gramneg/Periplasmic/fre_patterns.txt:4999: EDN ==> END
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/gramneg/Periplasmic/fre_patterns.txt:5012: EDE ==> EDGE
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/gramneg/Periplasmic/fre_patterns.txt:5232: EYT ==> YET
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/gramneg/Periplasmic/fre_patterns.txt:5746: ESY ==> EASY
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/gramneg/Periplasmic/fre_patterns.txt:6024: EGE ==> EDGE
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/gramneg/Periplasmic/fre_patterns.txt:6087: EGDE ==> EDGE
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/gramneg/Periplasmic/fre_patterns.txt:7630: DYAS ==> DRYAS
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/gramneg/Periplasmic/fre_patterns.txt:7824: DAEL ==> DEAL, DIAL, DAHL
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/gramneg/Periplasmic/fre_patterns.txt:7915: DAA ==> DATA
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/gramneg/Periplasmic/fre_patterns.txt:7942: DAKE ==> TAKE
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/gramneg/Periplasmic/fre_patterns.txt:8312: DED ==> DEAD
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/gramneg/Periplasmic/fre_patterns.txt:8516: DIEA ==> IDEA, DIE
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/gramneg/Periplasmic/fre_patterns.txt:8534: DIDI ==> DID
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/gramneg/Periplasmic/fre_patterns.txt:9149: DNE ==> DONE
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/gramneg/Periplasmic/fre_patterns.txt:9651: NIN ==> INN, MIN, BIN, NINE
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/gramneg/Periplasmic/fre_patterns.txt:10197: NWE ==> NEW
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/gramneg/Periplasmic/fre_patterns.txt:10303: ND ==> AND, 2ND
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/gramneg/Periplasmic/fre_patterns.txt:10325: NEAD ==> NEED
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/gramneg/Periplasmic/fre_patterns.txt:10332: NED ==> NEED
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/gramneg/Periplasmic/fre_patterns.txt:11265: GIR ==> GIT
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/gramneg/Periplasmic/fre_patterns.txt:11569: GRAT ==> GREAT
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/gramneg/Periplasmic/fre_patterns.txt:13367: YHE ==> THE
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/gramneg/Periplasmic/fre_patterns.txt:13465: YSE ==> YES, USE, NYSE
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/gramneg/Periplasmic/fre_patterns.txt:14268: ACN ==> CAN, ACNE
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/gramneg/Periplasmic/fre_patterns.txt:14272: ACI ==> ACPI
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/gramneg/Periplasmic/fre_patterns.txt:14424: AFE ==> SAFE
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/gramneg/Periplasmic/fre_patterns.txt:14698: AKE ==> ACHE
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/gramneg/Periplasmic/fre_patterns.txt:14723: AKS ==> ASK
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/gramneg/Periplasmic/fre_patterns.txt:15318: ANE ==> AND
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/gramneg/Periplasmic/fre_patterns.txt:15405: ANS ==> AND
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/gramneg/Periplasmic/fre_patterns.txt:15713: ATLL ==> ALL
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/gramneg/Periplasmic/fre_patterns.txt:15873: ARRE ==> ARE
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/gramneg/Periplasmic/fre_patterns.txt:16062: AESY ==> EASY
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/gramneg/Periplasmic/fre_patterns.txt:16253: AGINA ==> AGAIN, ANGINA
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/gramneg/Periplasmic/fre_patterns.txt:16254: AGIN ==> AGAIN
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/gramneg/Periplasmic/fre_patterns.txt:16499: ADIN ==> ADMIN
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/gramneg/Periplasmic/fre_patterns.txt:16579: ADGE ==> EDGE, BADGE, ADAGE
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/gramneg/Periplasmic/fre_patterns.txt:16606: ADN ==> AND
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/gramneg/Periplasmic/fre_patterns.txt:16687: ALLK ==> ALL
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/gramneg/Periplasmic/fre_patterns.txt:16693: ALLE ==> ALL, ALLEY
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/gramneg/Periplasmic/fre_patterns.txt:16707: ALLS ==> ALL, FALLS
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/gramneg/Periplasmic/fre_patterns.txt:16878: ALS ==> ALSO
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/gramneg/Periplasmic/fre_patterns.txt:17020: ASKE ==> ASK
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/gramneg/Periplasmic/fre_patterns.txt:17170: ASAI ==> ASIA
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/gramneg/Periplasmic/fre_patterns.txt:17263: AARE ==> ARE
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/gramneg/Periplasmic/fre_patterns.txt:17566: AADD ==> ADD
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/gramneg/Periplasmic/fre_patterns.txt:18046: IIF ==> IF
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/gramneg/Periplasmic/fre_patterns.txt:18525: IST ==> IS, IT, ITS, IT'S, SIT, LIST
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/gramneg/Periplasmic/fre_patterns.txt:18666: IHS ==> HIS
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/gramneg/Periplasmic/fre_patterns.txt:18746: IDAE ==> IDEA
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/gramneg/Periplasmic/fre_patterns.txt:19029: SCATCH ==> CATCH, SCRATCH, SKETCH
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/gramneg/Periplasmic/fre_patterns.txt:19606: SEH ==> SHE
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/gramneg/Periplasmic/fre_patterns.txt:19615: SER ==> SET
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/gramneg/Periplasmic/fre_patterns.txt:19635: SELT ==> SET, SELF, SOLD
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/gramneg/Periplasmic/fre_patterns.txt:20440: SYLE ==> STYLE
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/gramneg/Periplasmic/fre_patterns.txt:20627: SAV ==> SAVE
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/gramneg/Periplasmic/fre_patterns.txt:20770: SIE ==> SIZE, SIGH
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/gramneg/Periplasmic/fre_patterns.txt:20910: THI ==> THE, THIS
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/gramneg/Periplasmic/fre_patterns.txt:20913: THA ==> THAN, THAT, THE
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/gramneg/Periplasmic/fre_patterns.txt:20920: THW ==> THE, THAW
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/gramneg/Periplasmic/fre_patterns.txt:20921: THT ==> THE, THAT
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/gramneg/Periplasmic/fre_patterns.txt:20927: THS ==> THE, THIS
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/gramneg/Periplasmic/fre_patterns.txt:20930: THQ ==> THE
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/gramneg/Periplasmic/fre_patterns.txt:20937: THN ==> THEN
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/gramneg/Periplasmic/fre_patterns.txt:21070: TRE ==> TREE
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/gramneg/Periplasmic/fre_patterns.txt:21617: TAGE ==> STAGE, TAKE, TAG, TAGGED
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/gramneg/Periplasmic/fre_patterns.txt:21779: TYE ==> TYPE, TIE
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/gramneg/Periplasmic/fre_patterns.txt:21942: TKAE ==> TAKE
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/gramneg/Periplasmic/fre_patterns.txt:22006: TEY ==> THEY
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/gramneg/Periplasmic/fre_patterns.txt:22008: TEH ==> THE
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/gramneg/Periplasmic/fre_patterns.txt:22080: TE ==> THE, BE, WE
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/gramneg/Periplasmic/fre_patterns.txt:22734: VEW ==> VIEW
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/gramneg/Periplasmic/fre_patterns.txt:22776: VELL ==> WELL
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/gramneg/Periplasmic/fre_patterns.txt:23442: VIE ==> VIA
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/gramneg/Periplasmic/fre_patterns.txt:24110: VAVE ==> HAVE, VALVE
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/gramneg/Periplasmic/fre_patterns.txt:24181: VARN ==> WARN
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/gramneg/Periplasmic/fre_patterns.txt:24220: VAID ==> VALID, VOID
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/gramneg/Periplasmic/fre_patterns.txt:24327: VAS ==> WAS
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/gramneg/Periplasmic/fre_patterns.txt:24816: FWE ==> FEW
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/gramneg/Periplasmic/fre_patterns.txt:25035: FLE ==> FILE
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/gramneg/Periplasmic/fre_patterns.txt:25649: FPR ==> FOR, FAR, FPS
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/gramneg/Periplasmic/fre_patterns.txt:25724: FASE ==> FAZE, PHASE
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/gramneg/Periplasmic/fre_patterns.txt:25800: FALG ==> FLAG
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/gramneg/Periplasmic/fre_patterns.txt:25807: FALT ==> FAULT
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/gramneg/Periplasmic/fre_patterns.txt:26197: LSAT ==> LAST, SLAT, SAT
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/gramneg/Periplasmic/fre_patterns.txt:26239: LSIT ==> LIST, SLIT, SIT
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/gramneg/Periplasmic/fre_patterns.txt:27033: LKE ==> LIKE
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/gramneg/Periplasmic/fre_patterns.txt:27173: LEVL ==> LEVEL
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/gramneg/Periplasmic/fre_patterns.txt:27216: LEAS ==> LEAST, LEASE
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/gramneg/Periplasmic/fre_patterns.txt:27492: LARG ==> LARGE
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/gramneg/Periplasmic/fre_patterns.txt:28271: LIEK ==> LIKE
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/gramneg/Periplasmic/fre_patterns.txt:28288: LIK ==> LIKE, LICK, LINK
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/gramneg/Periplasmic/fre_patterns.txt:28293: LIGH ==> LIGHT, LIE, LYE
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/gramneg/Periplasmic/fre_patterns.txt:28810: KET ==> KEPT
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/gramneg/Periplasmic/fre_patterns.txt:30738: MEGE ==> MERGE
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/gramneg/Periplasmic/fre_patterns.txt:31139: MATA ==> META, MATER
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/gramneg/Periplasmic/fre_patterns.txt:31179: MAKA ==> MAKE
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/gramneg/Periplasmic/fre_patterns.txt:31253: MIAL ==> MAIL
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/gramneg/Periplasmic/fre_patterns.txt:31336: MYE ==> MAY, MY
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/gramneg/Periplasmic/fre_patterns.txt:31383: MKEA ==> MAKE
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/gramneg/Periplasmic/fre_patterns.txt:31384: MKE ==> MAKE
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/gramneg/Outermembrane/fre_patterns.txt:72: WYA ==> WAY
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/gramneg/Outermembrane/fre_patterns.txt:82: WIL ==> WILL, WELL
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/gramneg/Outermembrane/fre_patterns.txt:114: WHE ==> WHEN, WE
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/gramneg/Outermembrane/fre_patterns.txt:121: WAN ==> WANT
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/gramneg/Outermembrane/fre_patterns.txt:332: WQS ==> WAS
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/gramneg/Outermembrane/fre_patterns.txt:423: WLL ==> WILL
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/gramneg/Outermembrane/fre_patterns.txt:1935: DED ==> DEAD
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/gramneg/Outermembrane/fre_patterns.txt:2434: DAEL ==> DEAL, DIAL, DAHL
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/gramneg/Outermembrane/fre_patterns.txt:2518: DAA ==> DATA
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/gramneg/Outermembrane/fre_patterns.txt:3156: DNE ==> DONE
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/gramneg/Outermembrane/fre_patterns.txt:4698: NWE ==> NEW
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/gramneg/Outermembrane/fre_patterns.txt:5039: ND ==> AND, 2ND
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/gramneg/Outermembrane/fre_patterns.txt:5157: NEDD ==> NEED
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/gramneg/Outermembrane/fre_patterns.txt:5158: NED ==> NEED
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/gramneg/Outermembrane/fre_patterns.txt:5404: NIN ==> INN, MIN, BIN, NINE
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/gramneg/Outermembrane/fre_patterns.txt:5539: NANE ==> NAME
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/gramneg/Outermembrane/fre_patterns.txt:7248: GIR ==> GIT
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/gramneg/Outermembrane/fre_patterns.txt:8086: GRAT ==> GREAT
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/gramneg/Outermembrane/fre_patterns.txt:8674: YHE ==> THE
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/gramneg/Outermembrane/fre_patterns.txt:9556: YSE ==> YES, USE, NYSE
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/gramneg/Outermembrane/fre_patterns.txt:9795: YELD ==> YIELD
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/gramneg/Outermembrane/fre_patterns.txt:10198: PTD ==> PDF
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/gramneg/Outermembrane/fre_patterns.txt:11200: IHS ==> HIS
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/gramneg/Outermembrane/fre_patterns.txt:11894: ISTS ==> ITS, LISTS
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/gramneg/Outermembrane/fre_patterns.txt:11904: IST ==> IS, IT, ITS, IT'S, SIT, LIST
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/gramneg/Outermembrane/fre_patterns.txt:12101: INES ==> LINES
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/gramneg/Outermembrane/fre_patterns.txt:12715: ACI ==> ACPI
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/gramneg/Outermembrane/fre_patterns.txt:13468: AFE ==> SAFE
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/gramneg/Outermembrane/fre_patterns.txt:13876: ATLL ==> ALL
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/gramneg/Outermembrane/fre_patterns.txt:13963: ARAY ==> ARRAY
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/gramneg/Outermembrane/fre_patterns.txt:14028: ARRAL ==> ARRAY
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/gramneg/Outermembrane/fre_patterns.txt:14157: AKE ==> ACHE
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/gramneg/Outermembrane/fre_patterns.txt:14192: AKSS ==> ASKS, ASS
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/gramneg/Outermembrane/fre_patterns.txt:14195: AKS ==> ASK
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/gramneg/Outermembrane/fre_patterns.txt:14453: AGRE ==> AGREE
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/gramneg/Outermembrane/fre_patterns.txt:14687: AGIN ==> AGAIN
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/gramneg/Outermembrane/fre_patterns.txt:14771: ADGE ==> EDGE, BADGE, ADAGE
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/gramneg/Outermembrane/fre_patterns.txt:14910: ADN ==> AND
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/gramneg/Outermembrane/fre_patterns.txt:14949: ANE ==> AND
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/gramneg/Outermembrane/fre_patterns.txt:15038: ANLY ==> ONLY
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/gramneg/Outermembrane/fre_patterns.txt:15071: ANS ==> AND
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/gramneg/Outermembrane/fre_patterns.txt:15247: ALLK ==> ALL
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/gramneg/Outermembrane/fre_patterns.txt:15248: ALLS ==> ALL, FALLS
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/gramneg/Outermembrane/fre_patterns.txt:15267: ALLE ==> ALL, ALLEY
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/gramneg/Outermembrane/fre_patterns.txt:15330: ALSE ==> ALSO, ELSE, FALSE
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/gramneg/Outermembrane/fre_patterns.txt:15345: ALS ==> ALSO
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/gramneg/Outermembrane/fre_patterns.txt:15463: ASNY ==> ANY
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/gramneg/Outermembrane/fre_patterns.txt:15761: HGE ==> HE
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/gramneg/Outermembrane/fre_patterns.txt:15806: HDA ==> HAD
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/gramneg/Outermembrane/fre_patterns.txt:15827: HVE ==> HAVE
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/gramneg/Outermembrane/fre_patterns.txt:15859: HEL ==> HELP, HELL, HEAL
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/gramneg/Outermembrane/fre_patterns.txt:15984: HSI ==> HIS
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/gramneg/Outermembrane/fre_patterns.txt:16003: HSA ==> HAS
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/gramneg/Outermembrane/fre_patterns.txt:16071: HTE ==> THE
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/gramneg/Outermembrane/fre_patterns.txt:16103: HAA ==> HAS
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/gramneg/Outermembrane/fre_patterns.txt:16169: EHR ==> HER
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/gramneg/Outermembrane/fre_patterns.txt:16199: EDE ==> EDGE
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/gramneg/Outermembrane/fre_patterns.txt:16234: EDN ==> END
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/gramneg/Outermembrane/fre_patterns.txt:16271: ESY ==> EASY
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/gramneg/Outermembrane/fre_patterns.txt:16576: EGE ==> EDGE
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/gramneg/Outermembrane/fre_patterns.txt:17294: EYT ==> YET
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/gramneg/Outermembrane/fre_patterns.txt:19622: LKE ==> LIKE
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/gramneg/Outermembrane/fre_patterns.txt:20390: LSAT ==> LAST, SLAT, SAT
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/gramneg/Outermembrane/fre_patterns.txt:20520: LIK ==> LIKE, LICK, LINK
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/gramneg/Outermembrane/fre_patterns.txt:20632: LEAT ==> LEAD, LEAK, LEAST, LEAF
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/gramneg/Outermembrane/fre_patterns.txt:20635: LEAS ==> LEAST, LEASE
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/gramneg/Outermembrane/fre_patterns.txt:20790: CNA ==> CAN
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/gramneg/Outermembrane/fre_patterns.txt:21235: THA ==> THAN, THAT, THE
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/gramneg/Outermembrane/fre_patterns.txt:21236: THI ==> THE, THIS
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/gramneg/Outermembrane/fre_patterns.txt:21238: THT ==> THE, THAT
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/gramneg/Outermembrane/fre_patterns.txt:21239: THQ ==> THE
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/gramneg/Outermembrane/fre_patterns.txt:21245: THW ==> THE, THAW
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/gramneg/Outermembrane/fre_patterns.txt:21250: THN ==> THEN
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/gramneg/Outermembrane/fre_patterns.txt:21253: THS ==> THE, THIS
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/gramneg/Outermembrane/fre_patterns.txt:21324: TRE ==> TREE
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/gramneg/Outermembrane/fre_patterns.txt:21428: TAKS ==> TASK, TASKS
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/gramneg/Outermembrane/fre_patterns.txt:21532: TAST ==> TASTE
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/gramneg/Outermembrane/fre_patterns.txt:21767: TYE ==> TYPE, TIE
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/gramneg/Outermembrane/fre_patterns.txt:21825: TEH ==> THE
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/gramneg/Outermembrane/fre_patterns.txt:21879: TEY ==> THEY
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/gramneg/Outermembrane/fre_patterns.txt:21902: TE ==> THE, BE, WE
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/gramneg/Outermembrane/fre_patterns.txt:23267: KAKE ==> CAKE, TAKE
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/gramneg/Outermembrane/fre_patterns.txt:23652: KET ==> KEPT
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/gramneg/Outermembrane/fre_patterns.txt:25001: FLE ==> FILE
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/gramneg/Outermembrane/fre_patterns.txt:25058: FPR ==> FOR, FAR, FPS
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/gramneg/Outermembrane/fre_patterns.txt:25114: FALG ==> FLAG
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/gramneg/Outermembrane/fre_patterns.txt:25116: FALT ==> FAULT
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/gramneg/Outermembrane/fre_patterns.txt:26111: SMAE ==> SAME
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/gramneg/Outermembrane/fre_patterns.txt:26126: SMLL ==> SMALL, SMELL
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/gramneg/Outermembrane/fre_patterns.txt:26423: SVAE ==> SAVE
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/gramneg/Outermembrane/fre_patterns.txt:26809: STLE ==> STYLE
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/gramneg/Outermembrane/fre_patterns.txt:26922: SYAS ==> SAYS
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/gramneg/Outermembrane/fre_patterns.txt:27263: SIE ==> SIZE, SIGH
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/gramneg/Outermembrane/fre_patterns.txt:27421: SEH ==> SHE
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/gramneg/Outermembrane/fre_patterns.txt:27440: SELV ==> SELF
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/gramneg/Outermembrane/fre_patterns.txt:27448: SER ==> SET
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/gramneg/Outermembrane/fre_patterns.txt:27736: SAV ==> SAVE
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/gramneg/Outermembrane/fre_patterns.txt:27755: SAIS ==> SAYS
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/gramneg/Outermembrane/fre_patterns.txt:27859: SASY ==> SAYS, SASSY
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/gramneg/Outermembrane/fre_patterns.txt:27887: SADE ==> SAD
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/gramneg/Outermembrane/fre_patterns.txt:30005: RADY ==> READY
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/gramneg/Outermembrane/fre_patterns.txt:31243: VEW ==> VIEW
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/gramneg/Outermembrane/fre_patterns.txt:31249: VEYR ==> VERY
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/gramneg/Outermembrane/fre_patterns.txt:31344: VELL ==> WELL
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/gramneg/Outermembrane/fre_patterns.txt:31660: VILL ==> WILL
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/gramneg/Outermembrane/fre_patterns.txt:31705: VIE ==> VIA
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/gramneg/Outermembrane/fre_patterns.txt:32420: VAS ==> WAS
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/gramneg/Outermembrane/fre_patterns.txt:32467: VARN ==> WARN
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/gramneg/Outermembrane/fre_patterns.txt:32712: MYE ==> MAY, MY
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/gramneg/Outermembrane/fre_patterns.txt:32776: MKE ==> MAKE
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/gramneg/Cytoplasmic/fre_patterns.txt:528: FPR ==> FOR, FAR, FPS
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/gramneg/Cytoplasmic/fre_patterns.txt:1004: FLE ==> FILE
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/gramneg/Cytoplasmic/fre_patterns.txt:1128: HVE ==> HAVE
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/gramneg/Cytoplasmic/fre_patterns.txt:1175: HDA ==> HAD
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/gramneg/Cytoplasmic/fre_patterns.txt:1207: HSI ==> HIS
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/gramneg/Cytoplasmic/fre_patterns.txt:1218: HSA ==> HAS
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/gramneg/Cytoplasmic/fre_patterns.txt:1238: HTE ==> THE
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/gramneg/Cytoplasmic/fre_patterns.txt:1311: HAA ==> HAS
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/gramneg/Cytoplasmic/fre_patterns.txt:1422: HGE ==> HE
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/gramneg/Cytoplasmic/fre_patterns.txt:1520: HEL ==> HELP, HELL, HEAL
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/gramneg/Cytoplasmic/fre_patterns.txt:2178: PTD ==> PDF
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/gramneg/Cytoplasmic/fre_patterns.txt:3284: YHE ==> THE
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/gramneg/Cytoplasmic/fre_patterns.txt:3410: YSE ==> YES, USE, NYSE
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/gramneg/Cytoplasmic/fre_patterns.txt:3458: YREA ==> YEAR
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/gramneg/Cytoplasmic/fre_patterns.txt:3712: YAER ==> YEAR
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/gramneg/Cytoplasmic/fre_patterns.txt:4429: TEH ==> THE
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/gramneg/Cytoplasmic/fre_patterns.txt:4442: TEY ==> THEY
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/gramneg/Cytoplasmic/fre_patterns.txt:4467: TE ==> THE, BE, WE
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/gramneg/Cytoplasmic/fre_patterns.txt:4477: THN ==> THEN
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/gramneg/Cytoplasmic/fre_patterns.txt:4483: THT ==> THE, THAT
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/gramneg/Cytoplasmic/fre_patterns.txt:4484: THQ ==> THE
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/gramneg/Cytoplasmic/fre_patterns.txt:4489: THI ==> THE, THIS
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/gramneg/Cytoplasmic/fre_patterns.txt:4496: THA ==> THAN, THAT, THE
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/gramneg/Cytoplasmic/fre_patterns.txt:4499: THS ==> THE, THIS
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/gramneg/Cytoplasmic/fre_patterns.txt:4659: TRE ==> TREE
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/gramneg/Cytoplasmic/fre_patterns.txt:4807: TYE ==> TYPE, TIE
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/gramneg/Cytoplasmic/fre_patterns.txt:4849: WIT ==> WITH
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/gramneg/Cytoplasmic/fre_patterns.txt:4851: WIL ==> WILL, WELL
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/gramneg/Cytoplasmic/fre_patterns.txt:4896: WEE ==> WE
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/gramneg/Cytoplasmic/fre_patterns.txt:4929: WLL ==> WILL
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/gramneg/Cytoplasmic/fre_patterns.txt:6007: GRAT ==> GREAT
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/gramneg/Cytoplasmic/fre_patterns.txt:6323: GARD ==> GUARD
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/gramneg/Cytoplasmic/fre_patterns.txt:6720: GIR ==> GIT
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/gramneg/Cytoplasmic/fre_patterns.txt:8273: DNE ==> DONE
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/gramneg/Cytoplasmic/fre_patterns.txt:8568: DIEA ==> IDEA, DIE
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/gramneg/Cytoplasmic/fre_patterns.txt:8846: DED ==> DEAD
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/gramneg/Cytoplasmic/fre_patterns.txt:9319: DAA ==> DATA
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/gramneg/Cytoplasmic/fre_patterns.txt:9334: DAEL ==> DEAL, DIAL, DAHL
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/gramneg/Cytoplasmic/fre_patterns.txt:9761: LIK ==> LIKE, LICK, LINK
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/gramneg/Cytoplasmic/fre_patterns.txt:9778: LIEK ==> LIKE
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/gramneg/Cytoplasmic/fre_patterns.txt:10284: LEVL ==> LEVEL
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/gramneg/Cytoplasmic/fre_patterns.txt:10302: LENGH ==> LENGTH
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/gramneg/Cytoplasmic/fre_patterns.txt:10757: LKE ==> LIKE
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/gramneg/Cytoplasmic/fre_patterns.txt:11322: LARG ==> LARGE
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/gramneg/Cytoplasmic/fre_patterns.txt:11936: SEH ==> SHE
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/gramneg/Cytoplasmic/fre_patterns.txt:11987: SER ==> SET
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/gramneg/Cytoplasmic/fre_patterns.txt:12091: SIE ==> SIZE, SIGH
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/gramneg/Cytoplasmic/fre_patterns.txt:12109: SVAE ==> SAVE
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/gramneg/Cytoplasmic/fre_patterns.txt:12220: SAV ==> SAVE
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/gramneg/Cytoplasmic/fre_patterns.txt:12377: SSEE ==> SEE
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/gramneg/Cytoplasmic/fre_patterns.txt:12399: NWE ==> NEW
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/gramneg/Cytoplasmic/fre_patterns.txt:12490: ND ==> AND, 2ND
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/gramneg/Cytoplasmic/fre_patterns.txt:12763: NIN ==> INN, MIN, BIN, NINE
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/gramneg/Cytoplasmic/fre_patterns.txt:12817: NED ==> NEED
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/gramneg/Cytoplasmic/fre_patterns.txt:13293: IHS ==> HIS
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/gramneg/Cytoplasmic/fre_patterns.txt:13301: IIF ==> IF
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/gramneg/Cytoplasmic/fre_patterns.txt:13727: IST ==> IS, IT, ITS, IT'S, SIT, LIST
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/gramneg/Cytoplasmic/fre_patterns.txt:14056: IDAE ==> IDEA
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/gramneg/Cytoplasmic/fre_patterns.txt:14849: KAKE ==> CAKE, TAKE
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/gramneg/Cytoplasmic/fre_patterns.txt:14975: KET ==> KEPT
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/gramneg/Cytoplasmic/fre_patterns.txt:15570: EYT ==> YET
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/gramneg/Cytoplasmic/fre_patterns.txt:15619: EGE ==> EDGE
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/gramneg/Cytoplasmic/fre_patterns.txt:15844: ECT ==> ETC
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/gramneg/Cytoplasmic/fre_patterns.txt:15971: EDN ==> END
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/gramneg/Cytoplasmic/fre_patterns.txt:15977: EDE ==> EDGE
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/gramneg/Cytoplasmic/fre_patterns.txt:16347: ESY ==> EASY
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/gramneg/Cytoplasmic/fre_patterns.txt:16396: ESGE ==> EDGE
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/gramneg/Cytoplasmic/fre_patterns.txt:16403: ESLE ==> ELSE
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/gramneg/Cytoplasmic/fre_patterns.txt:16544: EHR ==> HER
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/gramneg/Cytoplasmic/fre_patterns.txt:16842: ELES ==> ELSE
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/gramneg/Cytoplasmic/fre_patterns.txt:17883: VIE ==> VIA
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/gramneg/Cytoplasmic/fre_patterns.txt:17950: VAS ==> WAS
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/gramneg/Cytoplasmic/fre_patterns.txt:17961: VAVE ==> HAVE, VALVE
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/gramneg/Cytoplasmic/fre_patterns.txt:18027: VARN ==> WARN
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/gramneg/Cytoplasmic/fre_patterns.txt:18584: VEW ==> VIEW
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/gramneg/Cytoplasmic/fre_patterns.txt:18639: VELL ==> WELL
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/gramneg/Cytoplasmic/fre_patterns.txt:18729: ACN ==> CAN, ACNE
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/gramneg/Cytoplasmic/fre_patterns.txt:18731: ACI ==> ACPI
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/gramneg/Cytoplasmic/fre_patterns.txt:18862: ANS ==> AND
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/gramneg/Cytoplasmic/fre_patterns.txt:18904: ANE ==> AND
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/gramneg/Cytoplasmic/fre_patterns.txt:19007: ALLS ==> ALL, FALLS
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/gramneg/Cytoplasmic/fre_patterns.txt:19009: ALLK ==> ALL
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/gramneg/Cytoplasmic/fre_patterns.txt:19014: ALLE ==> ALL, ALLEY
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/gramneg/Cytoplasmic/fre_patterns.txt:19097: ALSE ==> ALSO, ELSE, FALSE
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/gramneg/Cytoplasmic/fre_patterns.txt:19099: ALS ==> ALSO
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/gramneg/Cytoplasmic/fre_patterns.txt:19149: ADN ==> AND
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/gramneg/Cytoplasmic/fre_patterns.txt:19326: ATLL ==> ALL
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/gramneg/Cytoplasmic/fre_patterns.txt:19392: AFE ==> SAFE
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/gramneg/Cytoplasmic/fre_patterns.txt:19467: AKS ==> ASK
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/gramneg/Cytoplasmic/fre_patterns.txt:19533: AKE ==> ACHE
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/gramneg/Cytoplasmic/fre_patterns.txt:19622: AADD ==> ADD
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/gramneg/Cytoplasmic/fre_patterns.txt:19713: AARE ==> ARE
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/gramneg/Cytoplasmic/fre_patterns.txt:20459: ASKE ==> ASK
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/gramneg/Cytoplasmic/fre_patterns.txt:20854: MKE ==> MAKE
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/gramneg/Cytoplasmic/fre_patterns.txt:21018: MYE ==> MAY, MY
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/gramneg/Cytoplasmic/fre_patterns.txt:21181: MAKA ==> MAKE
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/gramneg/Innermembrane/fre_patterns.txt:1370: YHE ==> THE
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/gramneg/Innermembrane/fre_patterns.txt:1876: YSE ==> YES, USE, NYSE
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/gramneg/Innermembrane/fre_patterns.txt:2035: IHS ==> HIS
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/gramneg/Innermembrane/fre_patterns.txt:2416: IST ==> IS, IT, ITS, IT'S, SIT, LIST
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/gramneg/Innermembrane/fre_patterns.txt:3799: IIF ==> IF
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/gramneg/Innermembrane/fre_patterns.txt:4173: IWLL ==> WILL
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/gramneg/Innermembrane/fre_patterns.txt:4639: WEE ==> WE
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/gramneg/Innermembrane/fre_patterns.txt:4659: WYA ==> WAY
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/gramneg/Innermembrane/fre_patterns.txt:4708: WQS ==> WAS
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/gramneg/Innermembrane/fre_patterns.txt:4726: WTH ==> WITH
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/gramneg/Innermembrane/fre_patterns.txt:4846: WLL ==> WILL
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/gramneg/Innermembrane/fre_patterns.txt:4901: WAN ==> WANT
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/gramneg/Innermembrane/fre_patterns.txt:4958: WHE ==> WHEN, WE
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/gramneg/Innermembrane/fre_patterns.txt:4979: WIAT ==> WAIT
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/gramneg/Innermembrane/fre_patterns.txt:4986: WIL ==> WILL, WELL
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/gramneg/Innermembrane/fre_patterns.txt:4996: WIT ==> WITH
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/gramneg/Innermembrane/fre_patterns.txt:5192: FPR ==> FOR, FAR, FPS
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/gramneg/Innermembrane/fre_patterns.txt:5839: FILS ==> FILLS, FILES, FILE
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/gramneg/Innermembrane/fre_patterns.txt:6182: FALT ==> FAULT
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/gramneg/Innermembrane/fre_patterns.txt:6189: FALG ==> FLAG
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/gramneg/Innermembrane/fre_patterns.txt:6394: FWE ==> FEW
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/gramneg/Innermembrane/fre_patterns.txt:6421: FLE ==> FILE
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/gramneg/Innermembrane/fre_patterns.txt:6693: NWE ==> NEW
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/gramneg/Innermembrane/fre_patterns.txt:6922: ND ==> AND, 2ND
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/gramneg/Innermembrane/fre_patterns.txt:7091: NIN ==> INN, MIN, BIN, NINE
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/gramneg/Innermembrane/fre_patterns.txt:7321: NED ==> NEED
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/gramneg/Innermembrane/fre_patterns.txt:8838: RADE ==> READ, RAID
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/gramneg/Innermembrane/fre_patterns.txt:8893: ECT ==> ETC
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/gramneg/Innermembrane/fre_patterns.txt:9022: EHR ==> HER
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/gramneg/Innermembrane/fre_patterns.txt:9433: ELES ==> ELSE
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/gramneg/Innermembrane/fre_patterns.txt:9711: ESLE ==> ELSE
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/gramneg/Innermembrane/fre_patterns.txt:9747: ESY ==> EASY
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/gramneg/Innermembrane/fre_patterns.txt:9783: EYT ==> YET
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/gramneg/Innermembrane/fre_patterns.txt:9870: EDN ==> END
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/gramneg/Innermembrane/fre_patterns.txt:9878: EDE ==> EDGE
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/gramneg/Innermembrane/fre_patterns.txt:10180: EGE ==> EDGE
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/gramneg/Innermembrane/fre_patterns.txt:10365: HSI ==> HIS
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/gramneg/Innermembrane/fre_patterns.txt:10376: HSA ==> HAS
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/gramneg/Innermembrane/fre_patterns.txt:10422: HEL ==> HELP, HELL, HEAL
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/gramneg/Innermembrane/fre_patterns.txt:10442: HTE ==> THE
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/gramneg/Innermembrane/fre_patterns.txt:10462: HAA ==> HAS
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/gramneg/Innermembrane/fre_patterns.txt:10473: HALD ==> HELD
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/gramneg/Innermembrane/fre_patterns.txt:10489: HAVA ==> HAVE, HAVE A
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/gramneg/Innermembrane/fre_patterns.txt:10504: HDA ==> HAD
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/gramneg/Innermembrane/fre_patterns.txt:10695: HVE ==> HAVE
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/gramneg/Innermembrane/fre_patterns.txt:10742: HGE ==> HE
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/gramneg/Innermembrane/fre_patterns.txt:11814: PALN ==> PLAN, PAIN, PALM
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/gramneg/Innermembrane/fre_patterns.txt:11889: PASE ==> PASS, PACE, PARSE
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/gramneg/Innermembrane/fre_patterns.txt:12002: PTD ==> PDF
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/gramneg/Innermembrane/fre_patterns.txt:12367: LKE ==> LIKE
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/gramneg/Innermembrane/fre_patterns.txt:12856: LIK ==> LIKE, LICK, LINK
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/gramneg/Innermembrane/fre_patterns.txt:12939: LIEK ==> LIKE
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/gramneg/Innermembrane/fre_patterns.txt:12952: LITS ==> LIST
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/gramneg/Innermembrane/fre_patterns.txt:13205: LSIT ==> LIST, SLIT, SIT
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/gramneg/Innermembrane/fre_patterns.txt:13385: LSAT ==> LAST, SLAT, SAT
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/gramneg/Innermembrane/fre_patterns.txt:13613: LARG ==> LARGE
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/gramneg/Innermembrane/fre_patterns.txt:15769: LEAS ==> LEAST, LEASE
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/gramneg/Innermembrane/fre_patterns.txt:15798: LEVL ==> LEVEL
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/gramneg/Innermembrane/fre_patterns.txt:16552: KET ==> KEPT
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/gramneg/Innermembrane/fre_patterns.txt:17051: KAKE ==> CAKE, TAKE
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/gramneg/Innermembrane/fre_patterns.txt:17391: SEH ==> SHE
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/gramneg/Innermembrane/fre_patterns.txt:17395: SELV ==> SELF
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/gramneg/Innermembrane/fre_patterns.txt:17402: SELT ==> SET, SELF, SOLD
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/gramneg/Innermembrane/fre_patterns.txt:17453: SER ==> SET
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/gramneg/Innermembrane/fre_patterns.txt:17539: SMLL ==> SMALL, SMELL
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/gramneg/Innermembrane/fre_patterns.txt:17566: SMAL ==> SMALL
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/gramneg/Innermembrane/fre_patterns.txt:17651: SIE ==> SIZE, SIGH
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/gramneg/Innermembrane/fre_patterns.txt:17671: SISE ==> SIZE, SISAL
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/gramneg/Innermembrane/fre_patterns.txt:18406: STIL ==> STILL
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/gramneg/Innermembrane/fre_patterns.txt:18565: SVAE ==> SAVE
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/gramneg/Innermembrane/fre_patterns.txt:19027: SASY ==> SAYS, SASSY
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/gramneg/Innermembrane/fre_patterns.txt:19138: SAV ==> SAVE
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/gramneg/Innermembrane/fre_patterns.txt:19154: SAIS ==> SAYS
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/gramneg/Innermembrane/fre_patterns.txt:19316: THN ==> THEN
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/gramneg/Innermembrane/fre_patterns.txt:19317: THS ==> THE, THIS
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/gramneg/Innermembrane/fre_patterns.txt:19320: THW ==> THE, THAW
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/gramneg/Innermembrane/fre_patterns.txt:19322: THT ==> THE, THAT
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/gramneg/Innermembrane/fre_patterns.txt:19326: THI ==> THE, THIS
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/gramneg/Innermembrane/fre_patterns.txt:19330: THA ==> THAN, THAT, THE
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/gramneg/Innermembrane/fre_patterns.txt:19333: THQ ==> THE
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/gramneg/Innermembrane/fre_patterns.txt:19364: TEY ==> THEY
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/gramneg/Innermembrane/fre_patterns.txt:19368: TEH ==> THE
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/gramneg/Innermembrane/fre_patterns.txt:19414: TE ==> THE, BE, WE
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/gramneg/Innermembrane/fre_patterns.txt:19516: TYE ==> TYPE, TIE
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/gramneg/Innermembrane/fre_patterns.txt:19820: TRE ==> TREE
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/gramneg/Innermembrane/fre_patterns.txt:20252: TAST ==> TASTE
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/gramneg/Innermembrane/fre_patterns.txt:20330: TAGE ==> STAGE, TAKE, TAG, TAGGED
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/gramneg/Innermembrane/fre_patterns.txt:21074: DNE ==> DONE
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/gramneg/Innermembrane/fre_patterns.txt:21149: DIEA ==> IDEA, DIE
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/gramneg/Innermembrane/fre_patterns.txt:21426: DED ==> DEAD
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/gramneg/Innermembrane/fre_patterns.txt:21629: DAEL ==> DEAL, DIAL, DAHL
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/gramneg/Innermembrane/fre_patterns.txt:21716: DAA ==> DATA
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/gramneg/Innermembrane/fre_patterns.txt:22751: VIE ==> VIA
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/gramneg/Innermembrane/fre_patterns.txt:22892: VILL ==> WILL
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/gramneg/Innermembrane/fre_patterns.txt:23138: VEW ==> VIEW
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/gramneg/Innermembrane/fre_patterns.txt:23220: VELL ==> WELL
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/gramneg/Innermembrane/fre_patterns.txt:24421: VAS ==> WAS
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/gramneg/Innermembrane/fre_patterns.txt:24537: VAVE ==> HAVE, VALVE
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/gramneg/Innermembrane/fre_patterns.txt:26048: GIR ==> GIT
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/gramneg/Innermembrane/fre_patterns.txt:27359: GARD ==> GUARD
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/gramneg/Innermembrane/fre_patterns.txt:27495: ACI ==> ACPI
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/gramneg/Innermembrane/fre_patterns.txt:27512: ACN ==> CAN, ACNE
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/gramneg/Innermembrane/fre_patterns.txt:27645: ANE ==> AND
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/gramneg/Innermembrane/fre_patterns.txt:27698: ANS ==> AND
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/gramneg/Innermembrane/fre_patterns.txt:27948: ARRE ==> ARE
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/gramneg/Innermembrane/fre_patterns.txt:28210: AADD ==> ADD
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/gramneg/Innermembrane/fre_patterns.txt:28362: AARE ==> ARE
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/gramneg/Innermembrane/fre_patterns.txt:28796: AKE ==> ACHE
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/gramneg/Innermembrane/fre_patterns.txt:28821: AKSS ==> ASKS, ASS
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/gramneg/Innermembrane/fre_patterns.txt:28822: AKS ==> ASK
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/gramneg/Innermembrane/fre_patterns.txt:29046: ASKE ==> ASK
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/gramneg/Innermembrane/fre_patterns.txt:29094: ASII ==> ASCII
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/gramneg/Innermembrane/fre_patterns.txt:29183: ASAI ==> ASIA
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/gramneg/Innermembrane/fre_patterns.txt:29191: AFE ==> SAFE
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/gramneg/Innermembrane/fre_patterns.txt:29521: ALSE ==> ALSO, ELSE, FALSE
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/gramneg/Innermembrane/fre_patterns.txt:29522: ALS ==> ALSO
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/gramneg/Innermembrane/fre_patterns.txt:29748: ALLK ==> ALL
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/gramneg/Innermembrane/fre_patterns.txt:29759: ALLE ==> ALL, ALLEY
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/gramneg/Innermembrane/fre_patterns.txt:29793: ALLS ==> ALL, FALLS
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/gramneg/Innermembrane/fre_patterns.txt:29883: ADN ==> AND
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/gramneg/Innermembrane/fre_patterns.txt:30115: ATLL ==> ALL
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/gramneg/Innermembrane/fre_patterns.txt:30489: AGIN ==> AGAIN
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/gramneg/Innermembrane/fre_patterns.txt:30518: AGRE ==> AGREE
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/gramneg/Innermembrane/fre_patterns.txt:30871: MYE ==> MAY, MY
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/gramneg/Innermembrane/fre_patterns.txt:31177: MIAL ==> MAIL
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/gramneg/Innermembrane/fre_patterns.txt:31183: MIGT ==> MIGHT, MIDGET
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/gramneg/Innermembrane/fre_patterns.txt:31293: MKE ==> MAKE
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/gramneg/Innermembrane/fre_patterns.txt:31618: MATA ==> META, MATER
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/gramneg/Innermembrane/fre_patterns.txt:31639: MAKS ==> MASK, MASKS, MAKES, MAKE
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/gramneg/Extracellular/fre_patterns.txt:13: WAN ==> WANT
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/gramneg/Extracellular/fre_patterns.txt:79: WYA ==> WAY
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/gramneg/Extracellular/fre_patterns.txt:201: WQS ==> WAS
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/gramneg/Extracellular/fre_patterns.txt:254: WIL ==> WILL, WELL
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/gramneg/Extracellular/fre_patterns.txt:323: WLL ==> WILL
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/gramneg/Extracellular/fre_patterns.txt:431: HGE ==> HE
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/gramneg/Extracellular/fre_patterns.txt:453: HSA ==> HAS
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/gramneg/Extracellular/fre_patterns.txt:460: HSI ==> HIS
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/gramneg/Extracellular/fre_patterns.txt:477: HTE ==> THE
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/gramneg/Extracellular/fre_patterns.txt:532: HEL ==> HELP, HELL, HEAL
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/gramneg/Extracellular/fre_patterns.txt:545: HEIGH ==> HEIGHT, HIGH
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/gramneg/Extracellular/fre_patterns.txt:640: HDA ==> HAD
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/gramneg/Extracellular/fre_patterns.txt:661: HVE ==> HAVE
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/gramneg/Extracellular/fre_patterns.txt:852: HALD ==> HELD
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/gramneg/Extracellular/fre_patterns.txt:886: HAA ==> HAS
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/gramneg/Extracellular/fre_patterns.txt:952: CNA ==> CAN
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/gramneg/Extracellular/fre_patterns.txt:1078: YHE ==> THE
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/gramneg/Extracellular/fre_patterns.txt:1640: YSE ==> YES, USE, NYSE
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/gramneg/Extracellular/fre_patterns.txt:2371: LEAT ==> LEAD, LEAK, LEAST, LEAF
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/gramneg/Extracellular/fre_patterns.txt:2374: LEAS ==> LEAST, LEASE
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/gramneg/Extracellular/fre_patterns.txt:2450: LSAT ==> LAST, SLAT, SAT
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/gramneg/Extracellular/fre_patterns.txt:2463: LSIT ==> LIST, SLIT, SIT
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/gramneg/Extracellular/fre_patterns.txt:2791: LARG ==> LARGE
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/gramneg/Extracellular/fre_patterns.txt:3634: LIK ==> LIKE, LICK, LINK
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/gramneg/Extracellular/fre_patterns.txt:3658: LIGH ==> LIGHT, LIE, LYE
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/gramneg/Extracellular/fre_patterns.txt:3936: LKE ==> LIKE
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/gramneg/Extracellular/fre_patterns.txt:4638: NED ==> NEED
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/gramneg/Extracellular/fre_patterns.txt:4649: NEAD ==> NEED
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/gramneg/Extracellular/fre_patterns.txt:4663: NEES ==> NEEDS
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/gramneg/Extracellular/fre_patterns.txt:4864: NWE ==> NEW
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/gramneg/Extracellular/fre_patterns.txt:4946: NIN ==> INN, MIN, BIN, NINE
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/gramneg/Extracellular/fre_patterns.txt:5123: ND ==> AND, 2ND
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/gramneg/Extracellular/fre_patterns.txt:7792: REDY ==> READY, RED
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/gramneg/Extracellular/fre_patterns.txt:9744: PTD ==> PDF
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/gramneg/Extracellular/fre_patterns.txt:12471: GIR ==> GIT
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/gramneg/Extracellular/fre_patterns.txt:13043: KET ==> KEPT
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/gramneg/Extracellular/fre_patterns.txt:14381: KAKE ==> CAKE, TAKE
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/gramneg/Extracellular/fre_patterns.txt:14792: IHS ==> HIS
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/gramneg/Extracellular/fre_patterns.txt:15267: ISTS ==> ITS, LISTS
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/gramneg/Extracellular/fre_patterns.txt:15273: IST ==> IS, IT, ITS, IT'S, SIT, LIST
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/gramneg/Extracellular/fre_patterns.txt:15287: ISNT ==> ISN'T
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/gramneg/Extracellular/fre_patterns.txt:15728: IDAE ==> IDEA
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/gramneg/Extracellular/fre_patterns.txt:16036: IIF ==> IF
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/gramneg/Extracellular/fre_patterns.txt:16101: FWE ==> FEW
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/gramneg/Extracellular/fre_patterns.txt:16140: FPR ==> FOR, FAR, FPS
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/gramneg/Extracellular/fre_patterns.txt:16943: FLE ==> FILE
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/gramneg/Extracellular/fre_patterns.txt:17141: SMAL ==> SMALL
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/gramneg/Extracellular/fre_patterns.txt:17203: SEH ==> SHE
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/gramneg/Extracellular/fre_patterns.txt:17212: SELV ==> SELF
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/gramneg/Extracellular/fre_patterns.txt:17223: SELT ==> SET, SELF, SOLD
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/gramneg/Extracellular/fre_patterns.txt:17277: SER ==> SET
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/gramneg/Extracellular/fre_patterns.txt:17394: STIL ==> STILL
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/gramneg/Extracellular/fre_patterns.txt:17786: SVAE ==> SAVE
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/gramneg/Extracellular/fre_patterns.txt:18274: SSEE ==> SEE
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/gramneg/Extracellular/fre_patterns.txt:18372: SIE ==> SIZE, SIGH
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/gramneg/Extracellular/fre_patterns.txt:18623: SASY ==> SAYS, SASSY
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/gramneg/Extracellular/fre_patterns.txt:18673: SAV ==> SAVE
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/gramneg/Extracellular/fre_patterns.txt:18804: SAIS ==> SAYS
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/gramneg/Extracellular/fre_patterns.txt:19764: VIE ==> VIA
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/gramneg/Extracellular/fre_patterns.txt:20813: VAS ==> WAS
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/gramneg/Extracellular/fre_patterns.txt:21208: VEW ==> VIEW
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/gramneg/Extracellular/fre_patterns.txt:21604: ACI ==> ACPI
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/gramneg/Extracellular/fre_patterns.txt:21610: ACN ==> CAN, ACNE
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/gramneg/Extracellular/fre_patterns.txt:22463: ASII ==> ASCII
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/gramneg/Extracellular/fre_patterns.txt:22526: ASAI ==> ASIA
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/gramneg/Extracellular/fre_patterns.txt:23047: ALLE ==> ALL, ALLEY
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/gramneg/Extracellular/fre_patterns.txt:23048: ALLK ==> ALL
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/gramneg/Extracellular/fre_patterns.txt:23052: ALLS ==> ALL, FALLS
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/gramneg/Extracellular/fre_patterns.txt:23210: ALSE ==> ALSO, ELSE, FALSE
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/gramneg/Extracellular/fre_patterns.txt:23230: ALS ==> ALSO
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/gramneg/Extracellular/fre_patterns.txt:23302: AFE ==> SAFE
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/gramneg/Extracellular/fre_patterns.txt:23523: ANE ==> AND
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/gramneg/Extracellular/fre_patterns.txt:23650: ANS ==> AND
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/gramneg/Extracellular/fre_patterns.txt:23812: ADGE ==> EDGE, BADGE, ADAGE
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/gramneg/Extracellular/fre_patterns.txt:23880: ADN ==> AND
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/gramneg/Extracellular/fre_patterns.txt:23950: AKE ==> ACHE
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/gramneg/Extracellular/fre_patterns.txt:23975: AKS ==> ASK
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/gramneg/Extracellular/fre_patterns.txt:24090: AGRE ==> AGREE
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/gramneg/Extracellular/fre_patterns.txt:24177: AGIN ==> AGAIN
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/gramneg/Extracellular/fre_patterns.txt:24542: ATLL ==> ALL
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/gramneg/Extracellular/fre_patterns.txt:24666: DRAN ==> DRAWN
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/gramneg/Extracellular/fre_patterns.txt:25208: DIDI ==> DID
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/gramneg/Extracellular/fre_patterns.txt:25328: DED ==> DEAD
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/gramneg/Extracellular/fre_patterns.txt:26074: DNE ==> DONE
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/gramneg/Extracellular/fre_patterns.txt:26466: DAA ==> DATA
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/gramneg/Extracellular/fre_patterns.txt:26552: THN ==> THEN
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/gramneg/Extracellular/fre_patterns.txt:26555: THQ ==> THE
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/gramneg/Extracellular/fre_patterns.txt:26562: THA ==> THAN, THAT, THE
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/gramneg/Extracellular/fre_patterns.txt:26568: THEI ==> THEIR, THEY
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/gramneg/Extracellular/fre_patterns.txt:26571: THT ==> THE, THAT
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/gramneg/Extracellular/fre_patterns.txt:26576: THI ==> THE, THIS
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/gramneg/Extracellular/fre_patterns.txt:26577: THS ==> THE, THIS
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/gramneg/Extracellular/fre_patterns.txt:26668: TYE ==> TYPE, TIE
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/gramneg/Extracellular/fre_patterns.txt:27078: TRE ==> TREE
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/gramneg/Extracellular/fre_patterns.txt:28069: TAWK ==> TALK
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/gramneg/Extracellular/fre_patterns.txt:28085: TAKS ==> TASK, TASKS
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/gramneg/Extracellular/fre_patterns.txt:28143: TAST ==> TASTE
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/gramneg/Extracellular/fre_patterns.txt:28170: TAGE ==> STAGE, TAKE, TAG, TAGGED
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/gramneg/Extracellular/fre_patterns.txt:28363: TEY ==> THEY
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/gramneg/Extracellular/fre_patterns.txt:28396: TEH ==> THE
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/gramneg/Extracellular/fre_patterns.txt:28439: TE ==> THE, BE, WE
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/gramneg/Extracellular/fre_patterns.txt:28741: EHR ==> HER
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/gramneg/Extracellular/fre_patterns.txt:28790: EYT ==> YET
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/gramneg/Extracellular/fre_patterns.txt:29750: ESY ==> EASY
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/gramneg/Extracellular/fre_patterns.txt:29859: EDN ==> END
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/gramneg/Extracellular/fre_patterns.txt:29864: EDE ==> EDGE
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/gramneg/Extracellular/fre_patterns.txt:29895: EGE ==> EDGE
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/gramneg/Extracellular/fre_patterns.txt:30282: MIGT ==> MIGHT, MIDGET
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/gramneg/Extracellular/fre_patterns.txt:30440: MKE ==> MAKE
data/psortb-3.0.6+dfsg/psort/conf/analysis/subloc/gramneg/Extracellular/fre_patterns.txt:30483: MAKA ==> MAKE
data/psortb-3.0.6+dfsg/psort/conf/analysis/sclblast/archaea/sclblast:620: Cna ==> Can
data/psortb-3.0.6+dfsg/psort/conf/analysis/sclblast/archaea/sclblast:33709: Formate ==> Format
data/psortb-3.0.6+dfsg/psort/conf/analysis/sclblast/archaea/sclblast:39144: sycN ==> sync
data/psortb-3.0.6+dfsg/psort/conf/analysis/sclblast/archaea/sclblast:45517: partioning ==> partitioning, portioning
data/psortb-3.0.6+dfsg/psort/conf/analysis/sclblast/archaea/sclblast:45802: formate ==> format
data/psortb-3.0.6+dfsg/psort/conf/analysis/sclblast/archaea/sclblast:46120: Holliday ==> Holiday
data/psortb-3.0.6+dfsg/psort/conf/analysis/sclblast/archaea/sclblast:46124: Holliday ==> Holiday
data/psortb-3.0.6+dfsg/psort/conf/analysis/sclblast/archaea/sclblast:56726: Formate ==> Format
data/psortb-3.0.6+dfsg/psort/conf/analysis/sclblast/archaea/sclblast:58897: DNE ==> DONE
data/psortb-3.0.6+dfsg/psort/conf/analysis/sclblast/archaea/sclblast:71387: Formate ==> Format
data/psortb-3.0.6+dfsg/psort/conf/analysis/sclblast/archaea/sclblast:72114: Formate ==> Format
data/psortb-3.0.6+dfsg/psort/conf/analysis/sclblast/archaea/sclblast:73947: formate ==> format
data/psortb-3.0.6+dfsg/psort/conf/analysis/sclblast/archaea/sclblast:76185: formate ==> format
data/psortb-3.0.6+dfsg/psort/conf/analysis/sclblast/archaea/sclblast:77244: formate ==> format
data/psortb-3.0.6+dfsg/psort/conf/analysis/sclblast/archaea/sclblast:78668: Formate ==> Format
data/psortb-3.0.6+dfsg/psort/conf/analysis/sclblast/archaea/sclblast:81791: TE ==> THE, BE, WE
data/psortb-3.0.6+dfsg/psort/conf/analysis/sclblast/archaea/sclblast:84729: SEH ==> SHE
data/psortb-3.0.6+dfsg/psort/conf/analysis/sclblast/archaea/sclblast:85150: Ba ==> By, be
data/psortb-3.0.6+dfsg/psort/conf/analysis/sclblast/archaea/sclblast:85574: EGE ==> EDGE
data/psortb-3.0.6+dfsg/psort/conf/analysis/sclblast/archaea/sclblast+swissprot+some_manual:13458: formate ==> format
data/psortb-3.0.6+dfsg/psort/conf/analysis/sclblast/archaea/sclblast+swissprot+some_manual:14194: formate ==> format
data/psortb-3.0.6+dfsg/psort/conf/analysis/sclblast/grampos/sclblast:10584: Formate ==> Format
data/psortb-3.0.6+dfsg/psort/conf/analysis/sclblast/grampos/sclblast:12755: DNE ==> DONE
data/psortb-3.0.6+dfsg/psort/conf/analysis/sclblast/grampos/sclblast:17874: TE ==> THE, BE, WE
data/psortb-3.0.6+dfsg/psort/conf/analysis/sclblast/grampos/sclblast:20186: SEH ==> SHE
data/psortb-3.0.6+dfsg/psort/conf/analysis/sclblast/grampos/sclblast:20607: Ba ==> By, be
data/psortb-3.0.6+dfsg/psort/conf/analysis/sclblast/grampos/sclblast:21031: EGE ==> EDGE
data/psortb-3.0.6+dfsg/psort/conf/analysis/sclblast/grampos/sclblast:22988: Cna ==> Can
data/psortb-3.0.6+dfsg/psort/conf/analysis/sclblast/grampos/sclblast:55708: Formate ==> Format
data/psortb-3.0.6+dfsg/psort/conf/analysis/sclblast/grampos/sclblast:61143: sycN ==> sync
data/psortb-3.0.6+dfsg/psort/conf/analysis/sclblast/grampos/sclblast:67516: partioning ==> partitioning, portioning
data/psortb-3.0.6+dfsg/psort/conf/analysis/sclblast/grampos/sclblast:67801: formate ==> format
data/psortb-3.0.6+dfsg/psort/conf/analysis/sclblast/grampos/sclblast:68119: Holliday ==> Holiday
data/psortb-3.0.6+dfsg/psort/conf/analysis/sclblast/grampos/sclblast:68123: Holliday ==> Holiday
data/psortb-3.0.6+dfsg/psort/conf/analysis/sclblast/grampos/sclblast:71154: Formate ==> Format
data/psortb-3.0.6+dfsg/psort/conf/analysis/sclblast/grampos/sclblast:71881: Formate ==> Format
data/psortb-3.0.6+dfsg/psort/conf/analysis/sclblast/grampos/sclblast:73714: formate ==> format
data/psortb-3.0.6+dfsg/psort/conf/analysis/sclblast/grampos/sclblast:75952: formate ==> format
data/psortb-3.0.6+dfsg/psort/conf/analysis/sclblast/grampos/sclblast:77011: formate ==> format
data/psortb-3.0.6+dfsg/psort/conf/analysis/sclblast/grampos/sclblast:78435: Formate ==> Format
data/psortb-3.0.6+dfsg/psort/conf/analysis/sclblast/grampos/sclblast:80263: SEH ==> SHE
data/psortb-3.0.6+dfsg/psort/conf/analysis/sclblast/gramneg/sclblast:33318: Formate ==> Format
data/psortb-3.0.6+dfsg/psort/conf/analysis/sclblast/gramneg/sclblast:38753: sycN ==> sync
data/psortb-3.0.6+dfsg/psort/conf/analysis/sclblast/gramneg/sclblast:45126: partioning ==> partitioning, portioning
data/psortb-3.0.6+dfsg/psort/conf/analysis/sclblast/gramneg/sclblast:45411: formate ==> format
data/psortb-3.0.6+dfsg/psort/conf/analysis/sclblast/gramneg/sclblast:45729: Holliday ==> Holiday
data/psortb-3.0.6+dfsg/psort/conf/analysis/sclblast/gramneg/sclblast:45733: Holliday ==> Holiday
data/psortb-3.0.6+dfsg/psort/conf/analysis/sclblast/gramneg/sclblast:49598: Formate ==> Format
data/psortb-3.0.6+dfsg/psort/conf/analysis/sclblast/gramneg/sclblast:50325: Formate ==> Format
data/psortb-3.0.6+dfsg/psort/conf/analysis/sclblast/gramneg/sclblast:52158: formate ==> format
data/psortb-3.0.6+dfsg/psort/conf/analysis/sclblast/gramneg/sclblast:54396: formate ==> format
data/psortb-3.0.6+dfsg/psort/conf/analysis/sclblast/gramneg/sclblast:55455: formate ==> format
data/psortb-3.0.6+dfsg/psort/conf/analysis/sclblast/gramneg/sclblast:56879: Formate ==> Format
data/psortb-3.0.6+dfsg/psort/conf/analysis/sclblast/gramneg/sclblast:58702: FliE ==> file
data/psortb-3.0.6+dfsg/psort/conf/analysis/sclblast/gramneg/sclblast:60693: Formate ==> Format
data/psortb-3.0.6+dfsg/psort/conf/analysis/sclblast/gramneg/sclblast:61166: Formate ==> Format
data/psortb-3.0.6+dfsg/psort/conf/analysis/sclblast/gramneg/sclblast:61438: Formate ==> Format
data/psortb-3.0.6+dfsg/psort/conf/analysis/sclblast/gramneg/sclblast:61707: formate ==> format
data/psortb-3.0.6+dfsg/psort/conf/analysis/sclblast/gramneg/sclblast:66788: pulS ==> pulse, plus
data/psortb-3.0.6+dfsg/psort/conf/analysis/sclblast/gramneg/sclblast:79908: Formate ==> Format
data/psortb-3.0.6+dfsg/psort/conf/analysis/sclblast/gramneg/sclblast:82079: DNE ==> DONE
data/psortb-3.0.6+dfsg/psort/conf/analysis/sclblast/gramneg/sclblast:86359: TE ==> THE, BE, WE
data/psortb-3.0.6+dfsg/psort/conf/analysis/sclblast/gramneg/sclblast:91026: Holliday ==> Holiday
data/psortb-3.0.6+dfsg/psort/server/www/results.pl:80: occured ==> occurred
data/psortb-3.0.6+dfsg/psort/bin/psort.tmpt:28: instalation ==> installation
data/psortb-3.0.6+dfsg/psort/bin/psort:30: instalation ==> installation
data/psortb-3.0.6+dfsg/.pc/path_to_conf.patch/psort/bin/psort:30: instalation ==> installation