data/python-cogent-2020.2.7a+dfsg/README.md:15: focussed ==> focused
data/python-cogent-2020.2.7a+dfsg/doc/app/available-apps.ipynb:11: clumn ==> column
data/python-cogent-2020.2.7a+dfsg/doc/app/available-apps.ipynb:287: accomodate ==> accommodate
data/python-cogent-2020.2.7a+dfsg/doc/app/available-apps.ipynb:307: accomodate ==> accommodate
data/python-cogent-2020.2.7a+dfsg/doc/app/available-apps.ipynb:328: satisified ==> satisfied
data/python-cogent-2020.2.7a+dfsg/doc/app/available-apps.ipynb:457: accomodate ==> accommodate
data/python-cogent-2020.2.7a+dfsg/doc/app/available-apps.ipynb:461: accomodate ==> accommodate
data/python-cogent-2020.2.7a+dfsg/doc/app/available-apps.ipynb:466: satisified ==> satisfied
data/python-cogent-2020.2.7a+dfsg/doc/app/evo-tr-codon-model.ipynb:34: analagous ==> analogous
data/python-cogent-2020.2.7a+dfsg/doc/app/evo-tr-codon-model.ipynb:49: analagous ==> analogous
data/python-cogent-2020.2.7a+dfsg/doc/app/evo-tr-codon-model.ipynb:91: analagous ==> analogous
data/python-cogent-2020.2.7a+dfsg/doc/app/evo-tr-codon-model.ipynb:94: analagous ==> analogous
data/python-cogent-2020.2.7a+dfsg/doc/app/user_function.rst:12: compatable ==> compatible
data/python-cogent-2020.2.7a+dfsg/doc/cookbook/evo_modelling.ipynb:102: analagous ==> analogous
data/python-cogent-2020.2.7a+dfsg/doc/cookbook/evo_modelling.ipynb:117: analagous ==> analogous
data/python-cogent-2020.2.7a+dfsg/doc/cookbook/evo_modelling.ipynb:194: analagous ==> analogous
data/python-cogent-2020.2.7a+dfsg/doc/cookbook/evo_modelling.ipynb:197: analagous ==> analogous
data/python-cogent-2020.2.7a+dfsg/doc/cookbook/moltypes.ipynb:456: teh ==> the
data/python-cogent-2020.2.7a+dfsg/doc/data/dayhoff.dat:26: Ser ==> Set
data/python-cogent-2020.2.7a+dfsg/doc/draw/draw-seqlogo.ipynb:6707: bVe ==> be
data/python-cogent-2020.2.7a+dfsg/doc/draw/draw-seqlogo.ipynb:9495: edN ==> end
data/python-cogent-2020.2.7a+dfsg/doc/examples/handling_tabular_data.rst:663: formmatted ==> formatted
data/python-cogent-2020.2.7a+dfsg/doc/examples/handling_tabular_data.rst:902: convertor ==> converter
data/python-cogent-2020.2.7a+dfsg/doc/examples/handling_tabular_data.rst:902: convertor ==> converter
data/python-cogent-2020.2.7a+dfsg/doc/examples/handling_tabular_data.rst:2010: OTU ==> OUT
data/python-cogent-2020.2.7a+dfsg/doc/examples/handling_tabular_data.rst:2011: OTU ==> OUT
data/python-cogent-2020.2.7a+dfsg/doc/examples/handling_tabular_data.rst:2024: OTU ==> OUT
data/python-cogent-2020.2.7a+dfsg/doc/examples/handling_tabular_data.rst:2026: OTU ==> OUT
data/python-cogent-2020.2.7a+dfsg/doc/examples/handling_tabular_data.rst:2045: OTU ==> OUT
data/python-cogent-2020.2.7a+dfsg/doc/examples/handling_tabular_data.rst:2080: OTU ==> OUT
data/python-cogent-2020.2.7a+dfsg/doc/examples/period_estimation.rst:237: convertor ==> converter
data/python-cogent-2020.2.7a+dfsg/doc/examples/phylo_by_ls.rst:68: rigourous ==> rigorous
data/python-cogent-2020.2.7a+dfsg/doc/examples/testing_multi_loci.rst:6: get's ==> gets
data/python-cogent-2020.2.7a+dfsg/src/cogent3/align/_compare.c:2652: nd ==> and, 2nd
data/python-cogent-2020.2.7a+dfsg/src/cogent3/align/_compare.c:2705: nd ==> and, 2nd
data/python-cogent-2020.2.7a+dfsg/src/cogent3/align/_compare.c:2709: nd ==> and, 2nd
data/python-cogent-2020.2.7a+dfsg/src/cogent3/align/_compare.c:2715: nd ==> and, 2nd
data/python-cogent-2020.2.7a+dfsg/src/cogent3/align/_compare.c:2720: nd ==> and, 2nd
data/python-cogent-2020.2.7a+dfsg/src/cogent3/align/_compare.c:3924: compiletime ==> compile time
data/python-cogent-2020.2.7a+dfsg/src/cogent3/align/_pairwise_pogs.c:21960: nd ==> and, 2nd
data/python-cogent-2020.2.7a+dfsg/src/cogent3/align/_pairwise_pogs.c:22013: nd ==> and, 2nd
data/python-cogent-2020.2.7a+dfsg/src/cogent3/align/_pairwise_pogs.c:22017: nd ==> and, 2nd
data/python-cogent-2020.2.7a+dfsg/src/cogent3/align/_pairwise_pogs.c:22023: nd ==> and, 2nd
data/python-cogent-2020.2.7a+dfsg/src/cogent3/align/_pairwise_pogs.c:22028: nd ==> and, 2nd
data/python-cogent-2020.2.7a+dfsg/src/cogent3/align/_pairwise_pogs.c:24177: unparseable ==> unparsable
data/python-cogent-2020.2.7a+dfsg/src/cogent3/align/_pairwise_pogs.c:25691: compiletime ==> compile time
data/python-cogent-2020.2.7a+dfsg/src/cogent3/align/_pairwise_pogs.pyx:54: indicies ==> indices
data/python-cogent-2020.2.7a+dfsg/src/cogent3/align/_pairwise_seqs.c:21286: nd ==> and, 2nd
data/python-cogent-2020.2.7a+dfsg/src/cogent3/align/_pairwise_seqs.c:21339: nd ==> and, 2nd
data/python-cogent-2020.2.7a+dfsg/src/cogent3/align/_pairwise_seqs.c:21343: nd ==> and, 2nd
data/python-cogent-2020.2.7a+dfsg/src/cogent3/align/_pairwise_seqs.c:21349: nd ==> and, 2nd
data/python-cogent-2020.2.7a+dfsg/src/cogent3/align/_pairwise_seqs.c:21354: nd ==> and, 2nd
data/python-cogent-2020.2.7a+dfsg/src/cogent3/align/_pairwise_seqs.c:23481: unparseable ==> unparsable
data/python-cogent-2020.2.7a+dfsg/src/cogent3/align/_pairwise_seqs.c:24995: compiletime ==> compile time
data/python-cogent-2020.2.7a+dfsg/src/cogent3/align/_pairwise_seqs.pyx:52: indicies ==> indices
data/python-cogent-2020.2.7a+dfsg/src/cogent3/align/indel_positions.py:14: upto ==> up to
data/python-cogent-2020.2.7a+dfsg/src/cogent3/align/indel_positions.py:20: upto ==> up to
data/python-cogent-2020.2.7a+dfsg/src/cogent3/align/indel_positions.py:21: upto ==> up to
data/python-cogent-2020.2.7a+dfsg/src/cogent3/align/indel_positions.py:26: upto ==> up to
data/python-cogent-2020.2.7a+dfsg/src/cogent3/align/indel_positions.py:152: ajacent ==> adjacent
data/python-cogent-2020.2.7a+dfsg/src/cogent3/align/indel_positions.py:200: reversable ==> reversible
data/python-cogent-2020.2.7a+dfsg/src/cogent3/align/pairwise.py:1093: reversable ==> reversible
data/python-cogent-2020.2.7a+dfsg/src/cogent3/align/dp_calculation.py:61: potentialy ==> potentially
data/python-cogent-2020.2.7a+dfsg/src/cogent3/app/composable.py:453: unecessarily ==> unnecessarily
data/python-cogent-2020.2.7a+dfsg/src/cogent3/app/data_store.py:518: wil ==> will, well
data/python-cogent-2020.2.7a+dfsg/src/cogent3/app/sample.py:61: missings ==> missing
data/python-cogent-2020.2.7a+dfsg/src/cogent3/app/sample.py:99: accomodate ==> accommodate
data/python-cogent-2020.2.7a+dfsg/src/cogent3/app/sample.py:153: accomodate ==> accommodate
data/python-cogent-2020.2.7a+dfsg/src/cogent3/app/sample.py:229: identifer ==> identifier
data/python-cogent-2020.2.7a+dfsg/src/cogent3/app/sample.py:304: satisified ==> satisfied
data/python-cogent-2020.2.7a+dfsg/src/cogent3/app/translate.py:98: identifer ==> identifier
data/python-cogent-2020.2.7a+dfsg/src/cogent3/app/translate.py:125: identifer ==> identifier
data/python-cogent-2020.2.7a+dfsg/src/cogent3/core/alignment.py:3492: ecept ==> except
data/python-cogent-2020.2.7a+dfsg/src/cogent3/core/alphabet.py:330: Sliently ==> Silently
data/python-cogent-2020.2.7a+dfsg/src/cogent3/core/alphabet.py:549: avalable ==> available
data/python-cogent-2020.2.7a+dfsg/src/cogent3/core/alphabet.py:599: seqeunce ==> sequence
data/python-cogent-2020.2.7a+dfsg/src/cogent3/core/alphabet.py:750: represntation ==> representation
data/python-cogent-2020.2.7a+dfsg/src/cogent3/core/alphabet.py:780: alhabet ==> alphabet
data/python-cogent-2020.2.7a+dfsg/src/cogent3/core/location.py:215: optionaly ==> optionally
data/python-cogent-2020.2.7a+dfsg/src/cogent3/core/moltype.py:1131: possibilites ==> possibilities
data/python-cogent-2020.2.7a+dfsg/src/cogent3/core/sequence.py:362: possibilites ==> possibilities
data/python-cogent-2020.2.7a+dfsg/src/cogent3/core/sequence.py:1462: Alpabet ==> Alphabet
data/python-cogent-2020.2.7a+dfsg/src/cogent3/core/tree.py:25: preceeding ==> preceding, proceeding
data/python-cogent-2020.2.7a+dfsg/src/cogent3/core/tree.py:689: decendant ==> descendant
data/python-cogent-2020.2.7a+dfsg/src/cogent3/core/tree.py:747: decendant ==> descendant
data/python-cogent-2020.2.7a+dfsg/src/cogent3/core/tree.py:784: chilren ==> children
data/python-cogent-2020.2.7a+dfsg/src/cogent3/core/tree.py:1069: calcluates ==> calculates
data/python-cogent-2020.2.7a+dfsg/src/cogent3/core/tree.py:1115: nessessary ==> necessary
data/python-cogent-2020.2.7a+dfsg/src/cogent3/core/tree.py:1206: elminated ==> eliminated
data/python-cogent-2020.2.7a+dfsg/src/cogent3/core/tree.py:1727: nessessary ==> necessary
data/python-cogent-2020.2.7a+dfsg/src/cogent3/core/tree.py:2147: calcluates ==> calculates
data/python-cogent-2020.2.7a+dfsg/src/cogent3/core/tree.py:2193: nessessary ==> necessary
data/python-cogent-2020.2.7a+dfsg/src/cogent3/core/tree.py:2270: nessessary ==> necessary
data/python-cogent-2020.2.7a+dfsg/src/cogent3/draw/dendrogram.py:79: determin ==> determine
data/python-cogent-2020.2.7a+dfsg/src/cogent3/draw/dendrogram.py:984: dislaying ==> displaying
data/python-cogent-2020.2.7a+dfsg/src/cogent3/evolve/_likelihood_tree.c:19087: nd ==> and, 2nd
data/python-cogent-2020.2.7a+dfsg/src/cogent3/evolve/_likelihood_tree.c:19140: nd ==> and, 2nd
data/python-cogent-2020.2.7a+dfsg/src/cogent3/evolve/_likelihood_tree.c:19144: nd ==> and, 2nd
data/python-cogent-2020.2.7a+dfsg/src/cogent3/evolve/_likelihood_tree.c:19150: nd ==> and, 2nd
data/python-cogent-2020.2.7a+dfsg/src/cogent3/evolve/_likelihood_tree.c:19155: nd ==> and, 2nd
data/python-cogent-2020.2.7a+dfsg/src/cogent3/evolve/_likelihood_tree.c:21257: unparseable ==> unparsable
data/python-cogent-2020.2.7a+dfsg/src/cogent3/evolve/_likelihood_tree.c:22714: compiletime ==> compile time
data/python-cogent-2020.2.7a+dfsg/src/cogent3/evolve/_pairwise_distance.c:1237: nd ==> and, 2nd
data/python-cogent-2020.2.7a+dfsg/src/cogent3/evolve/_pairwise_distance.c:1240: nd ==> and, 2nd
data/python-cogent-2020.2.7a+dfsg/src/cogent3/evolve/_pairwise_distance.c:1242: nd ==> and, 2nd
data/python-cogent-2020.2.7a+dfsg/src/cogent3/evolve/_pairwise_distance.c:5259: unparseable ==> unparsable
data/python-cogent-2020.2.7a+dfsg/src/cogent3/evolve/_pairwise_distance.c:5701: nd ==> and, 2nd
data/python-cogent-2020.2.7a+dfsg/src/cogent3/evolve/_pairwise_distance.c:5708: nd ==> and, 2nd
data/python-cogent-2020.2.7a+dfsg/src/cogent3/evolve/_pairwise_distance.c:5711: nd ==> and, 2nd
data/python-cogent-2020.2.7a+dfsg/src/cogent3/evolve/_pairwise_distance.c:6006: nd ==> and, 2nd
data/python-cogent-2020.2.7a+dfsg/src/cogent3/evolve/_pairwise_distance.c:6059: nd ==> and, 2nd
data/python-cogent-2020.2.7a+dfsg/src/cogent3/evolve/_pairwise_distance.c:6063: nd ==> and, 2nd
data/python-cogent-2020.2.7a+dfsg/src/cogent3/evolve/_pairwise_distance.c:6069: nd ==> and, 2nd
data/python-cogent-2020.2.7a+dfsg/src/cogent3/evolve/_pairwise_distance.c:6074: nd ==> and, 2nd
data/python-cogent-2020.2.7a+dfsg/src/cogent3/evolve/_pairwise_distance.c:7579: compiletime ==> compile time
data/python-cogent-2020.2.7a+dfsg/src/cogent3/evolve/_solved_models.c:17819: nd ==> and, 2nd
data/python-cogent-2020.2.7a+dfsg/src/cogent3/evolve/_solved_models.c:17872: nd ==> and, 2nd
data/python-cogent-2020.2.7a+dfsg/src/cogent3/evolve/_solved_models.c:17876: nd ==> and, 2nd
data/python-cogent-2020.2.7a+dfsg/src/cogent3/evolve/_solved_models.c:17882: nd ==> and, 2nd
data/python-cogent-2020.2.7a+dfsg/src/cogent3/evolve/_solved_models.c:17887: nd ==> and, 2nd
data/python-cogent-2020.2.7a+dfsg/src/cogent3/evolve/_solved_models.c:19974: unparseable ==> unparsable
data/python-cogent-2020.2.7a+dfsg/src/cogent3/evolve/_solved_models.c:21396: compiletime ==> compile time
data/python-cogent-2020.2.7a+dfsg/src/cogent3/evolve/coevolution.py:705: desciption ==> description
data/python-cogent-2020.2.7a+dfsg/src/cogent3/evolve/coevolution.py:707: euclidian ==> euclidean
data/python-cogent-2020.2.7a+dfsg/src/cogent3/evolve/coevolution.py:716: Euclidian ==> Euclidean
data/python-cogent-2020.2.7a+dfsg/src/cogent3/evolve/coevolution.py:1326: occuring ==> occurring
data/python-cogent-2020.2.7a+dfsg/src/cogent3/evolve/coevolution.py:1477: Incompatbility ==> Incompatibility
data/python-cogent-2020.2.7a+dfsg/src/cogent3/evolve/coevolution.py:1696: defualt ==> default
data/python-cogent-2020.2.7a+dfsg/src/cogent3/evolve/coevolution.py:1708: apparant ==> apparent
data/python-cogent-2020.2.7a+dfsg/src/cogent3/evolve/coevolution.py:1719: faciliate ==> facilitate
data/python-cogent-2020.2.7a+dfsg/src/cogent3/evolve/coevolution.py:2020: alignmnet ==> alignment
data/python-cogent-2020.2.7a+dfsg/src/cogent3/evolve/coevolution.py:2037: doesnt ==> doesn't, does not
data/python-cogent-2020.2.7a+dfsg/src/cogent3/evolve/coevolution.py:2302: theshold ==> threshold
data/python-cogent-2020.2.7a+dfsg/src/cogent3/evolve/coevolution.py:2368: thresold ==> threshold
data/python-cogent-2020.2.7a+dfsg/src/cogent3/evolve/fast_distance.py:207: indentical ==> identical
data/python-cogent-2020.2.7a+dfsg/src/cogent3/evolve/likelihood_calculation.py:149: communicaton ==> communication
data/python-cogent-2020.2.7a+dfsg/src/cogent3/evolve/likelihood_function.py:1008: legnth ==> length
data/python-cogent-2020.2.7a+dfsg/src/cogent3/evolve/models.py:177: analagous ==> analogous
data/python-cogent-2020.2.7a+dfsg/src/cogent3/evolve/models.py:228: analagous ==> analogous
data/python-cogent-2020.2.7a+dfsg/src/cogent3/evolve/ns_substitution_model.py:183: alph ==> alpha
data/python-cogent-2020.2.7a+dfsg/src/cogent3/evolve/ns_substitution_model.py:185: alph ==> alpha
data/python-cogent-2020.2.7a+dfsg/src/cogent3/evolve/ns_substitution_model.py:185: alph ==> alpha
data/python-cogent-2020.2.7a+dfsg/src/cogent3/evolve/ns_substitution_model.py:186: alph ==> alpha
data/python-cogent-2020.2.7a+dfsg/src/cogent3/evolve/parameter_controller.py:60: recalulation ==> recalculation
data/python-cogent-2020.2.7a+dfsg/src/cogent3/evolve/parameter_controller.py:258: modifes ==> modifies
data/python-cogent-2020.2.7a+dfsg/src/cogent3/evolve/predicate.py:231: specificly ==> specifically
data/python-cogent-2020.2.7a+dfsg/src/cogent3/evolve/simulate.py:105: numer ==> number
data/python-cogent-2020.2.7a+dfsg/src/cogent3/evolve/solved_models.py:42: overrrides ==> overrides
data/python-cogent-2020.2.7a+dfsg/src/cogent3/evolve/substitution_calculation.py:38: recalulation ==> recalculation
data/python-cogent-2020.2.7a+dfsg/src/cogent3/evolve/substitution_model.py:541: contigous ==> contiguous
data/python-cogent-2020.2.7a+dfsg/src/cogent3/evolve/substitution_model.py:945: alph ==> alpha
data/python-cogent-2020.2.7a+dfsg/src/cogent3/evolve/substitution_model.py:947: alph ==> alpha
data/python-cogent-2020.2.7a+dfsg/src/cogent3/evolve/substitution_model.py:947: alph ==> alpha
data/python-cogent-2020.2.7a+dfsg/src/cogent3/evolve/substitution_model.py:948: alph ==> alpha
data/python-cogent-2020.2.7a+dfsg/src/cogent3/evolve/substitution_model.py:954: alph ==> alpha
data/python-cogent-2020.2.7a+dfsg/src/cogent3/evolve/substitution_model.py:956: alph ==> alpha
data/python-cogent-2020.2.7a+dfsg/src/cogent3/format/phylip.py:60: otu ==> out
data/python-cogent-2020.2.7a+dfsg/src/cogent3/maths/_period.c:1249: nd ==> and, 2nd
data/python-cogent-2020.2.7a+dfsg/src/cogent3/maths/_period.c:1252: nd ==> and, 2nd
data/python-cogent-2020.2.7a+dfsg/src/cogent3/maths/_period.c:1254: nd ==> and, 2nd
data/python-cogent-2020.2.7a+dfsg/src/cogent3/maths/_period.c:6494: unparseable ==> unparsable
data/python-cogent-2020.2.7a+dfsg/src/cogent3/maths/_period.c:6936: nd ==> and, 2nd
data/python-cogent-2020.2.7a+dfsg/src/cogent3/maths/_period.c:6943: nd ==> and, 2nd
data/python-cogent-2020.2.7a+dfsg/src/cogent3/maths/_period.c:6946: nd ==> and, 2nd
data/python-cogent-2020.2.7a+dfsg/src/cogent3/maths/_period.c:7093: nd ==> and, 2nd
data/python-cogent-2020.2.7a+dfsg/src/cogent3/maths/_period.c:7146: nd ==> and, 2nd
data/python-cogent-2020.2.7a+dfsg/src/cogent3/maths/_period.c:7150: nd ==> and, 2nd
data/python-cogent-2020.2.7a+dfsg/src/cogent3/maths/_period.c:7156: nd ==> and, 2nd
data/python-cogent-2020.2.7a+dfsg/src/cogent3/maths/_period.c:7161: nd ==> and, 2nd
data/python-cogent-2020.2.7a+dfsg/src/cogent3/maths/_period.c:9245: compiletime ==> compile time
data/python-cogent-2020.2.7a+dfsg/src/cogent3/maths/distance_transform.py:19: presense ==> presence
data/python-cogent-2020.2.7a+dfsg/src/cogent3/maths/distance_transform.py:19: absense ==> absence
data/python-cogent-2020.2.7a+dfsg/src/cogent3/maths/distance_transform.py:1120: analagous ==> analogous
data/python-cogent-2020.2.7a+dfsg/src/cogent3/maths/matrix_exponentiation.py:76: compatability ==> compatibility
data/python-cogent-2020.2.7a+dfsg/src/cogent3/maths/matrix_logarithm.py:105: gauranteed ==> guaranteed
data/python-cogent-2020.2.7a+dfsg/src/cogent3/maths/matrix_logarithm.py:120: fro ==> for, from
data/python-cogent-2020.2.7a+dfsg/src/cogent3/maths/matrix_logarithm.py:125: fro ==> for, from
data/python-cogent-2020.2.7a+dfsg/src/cogent3/maths/optimisers.py:221: partialy ==> partially
data/python-cogent-2020.2.7a+dfsg/src/cogent3/maths/scipy_optimisers.py:38: boundry ==> boundary
data/python-cogent-2020.2.7a+dfsg/src/cogent3/maths/scipy_optimisers.py:95: incase ==> in case
data/python-cogent-2020.2.7a+dfsg/src/cogent3/maths/scipy_optimize.py:117: dum ==> dumb
data/python-cogent-2020.2.7a+dfsg/src/cogent3/maths/scipy_optimize.py:119: dum ==> dumb
data/python-cogent-2020.2.7a+dfsg/src/cogent3/maths/scipy_optimize.py:331: dum ==> dumb
data/python-cogent-2020.2.7a+dfsg/src/cogent3/maths/scipy_optimize.py:333: dum ==> dumb
data/python-cogent-2020.2.7a+dfsg/src/cogent3/maths/scipy_optimize.py:334: dum ==> dumb
data/python-cogent-2020.2.7a+dfsg/src/cogent3/maths/scipy_optimize.py:336: dum ==> dumb
data/python-cogent-2020.2.7a+dfsg/src/cogent3/maths/scipy_optimize.py:401: minimium ==> minimum
data/python-cogent-2020.2.7a+dfsg/src/cogent3/maths/stats/period.py:69: represetation ==> representation
data/python-cogent-2020.2.7a+dfsg/src/cogent3/maths/stats/period.py:198: interation ==> iteration, interaction
data/python-cogent-2020.2.7a+dfsg/src/cogent3/maths/stats/special.py:404: ans ==> and
data/python-cogent-2020.2.7a+dfsg/src/cogent3/maths/stats/special.py:415: ans ==> and
data/python-cogent-2020.2.7a+dfsg/src/cogent3/maths/stats/special.py:416: ans ==> and
data/python-cogent-2020.2.7a+dfsg/src/cogent3/maths/stats/special.py:430: ans ==> and
data/python-cogent-2020.2.7a+dfsg/src/cogent3/maths/stats/special.py:450: ans ==> and
data/python-cogent-2020.2.7a+dfsg/src/cogent3/maths/stats/special.py:454: ans ==> and
data/python-cogent-2020.2.7a+dfsg/src/cogent3/maths/stats/special.py:455: ans ==> and
data/python-cogent-2020.2.7a+dfsg/src/cogent3/maths/stats/special.py:458: ans ==> and
data/python-cogent-2020.2.7a+dfsg/src/cogent3/maths/stats/special.py:462: fuction ==> function
data/python-cogent-2020.2.7a+dfsg/src/cogent3/maths/stats/special.py:613: ans ==> and
data/python-cogent-2020.2.7a+dfsg/src/cogent3/maths/stats/special.py:638: ans ==> and
data/python-cogent-2020.2.7a+dfsg/src/cogent3/maths/stats/special.py:639: ans ==> and
data/python-cogent-2020.2.7a+dfsg/src/cogent3/maths/stats/special.py:643: ans ==> and
data/python-cogent-2020.2.7a+dfsg/src/cogent3/maths/stats/special.py:665: ans ==> and
data/python-cogent-2020.2.7a+dfsg/src/cogent3/maths/stats/special.py:687: ans ==> and
data/python-cogent-2020.2.7a+dfsg/src/cogent3/maths/stats/special.py:712: ans ==> and
data/python-cogent-2020.2.7a+dfsg/src/cogent3/maths/stats/special.py:713: ans ==> and
data/python-cogent-2020.2.7a+dfsg/src/cogent3/maths/stats/special.py:717: ans ==> and
data/python-cogent-2020.2.7a+dfsg/src/cogent3/maths/stats/special.py:740: ans ==> and
data/python-cogent-2020.2.7a+dfsg/src/cogent3/maths/stats/test.py:88: similiar ==> similar
data/python-cogent-2020.2.7a+dfsg/src/cogent3/maths/stats/test.py:160: similiar ==> similar
data/python-cogent-2020.2.7a+dfsg/src/cogent3/maths/stats/test.py:162: substition ==> substitution
data/python-cogent-2020.2.7a+dfsg/src/cogent3/parse/blast.py:162: succesive ==> successive
data/python-cogent-2020.2.7a+dfsg/src/cogent3/parse/blast_xml.py:128: fro ==> for, from
data/python-cogent-2020.2.7a+dfsg/src/cogent3/parse/blast_xml.py:149: succesive ==> successive
data/python-cogent-2020.2.7a+dfsg/src/cogent3/parse/ebi.py:117: auxillary ==> auxiliary
data/python-cogent-2020.2.7a+dfsg/src/cogent3/parse/ebi.py:122: auxillary ==> auxiliary
data/python-cogent-2020.2.7a+dfsg/src/cogent3/parse/ebi.py:215: splitted ==> split
data/python-cogent-2020.2.7a+dfsg/src/cogent3/parse/ebi.py:256: splitted ==> split
data/python-cogent-2020.2.7a+dfsg/src/cogent3/parse/ebi.py:261: splitted ==> split
data/python-cogent-2020.2.7a+dfsg/src/cogent3/parse/ebi.py:261: constucting ==> constructing
data/python-cogent-2020.2.7a+dfsg/src/cogent3/parse/ebi.py:269: splitted ==> split
data/python-cogent-2020.2.7a+dfsg/src/cogent3/parse/ebi.py:278: splitted ==> split
data/python-cogent-2020.2.7a+dfsg/src/cogent3/parse/ebi.py:281: splitted ==> split
data/python-cogent-2020.2.7a+dfsg/src/cogent3/parse/ebi.py:745: postions ==> positions
data/python-cogent-2020.2.7a+dfsg/src/cogent3/parse/ebi.py:783: decription ==> description
data/python-cogent-2020.2.7a+dfsg/src/cogent3/parse/ebi.py:1307: stipped ==> stripped
data/python-cogent-2020.2.7a+dfsg/src/cogent3/parse/ebi.py:1425: Emtpy ==> Empty
data/python-cogent-2020.2.7a+dfsg/src/cogent3/parse/gcg.py:20: seperated ==> separated
data/python-cogent-2020.2.7a+dfsg/src/cogent3/parse/genbank.py:586: occurrs ==> occurs
data/python-cogent-2020.2.7a+dfsg/src/cogent3/parse/locuslink.py:13: specificiation ==> specification
data/python-cogent-2020.2.7a+dfsg/src/cogent3/parse/locuslink.py:14: assocation ==> association
data/python-cogent-2020.2.7a+dfsg/src/cogent3/parse/ncbi_taxonomy.py:300: fron ==> from
data/python-cogent-2020.2.7a+dfsg/src/cogent3/parse/newick.py:151: sentinals ==> sentinels
data/python-cogent-2020.2.7a+dfsg/src/cogent3/parse/newick.py:170: sentinals ==> sentinels
data/python-cogent-2020.2.7a+dfsg/src/cogent3/parse/newick.py:171: sentinals ==> sentinels
data/python-cogent-2020.2.7a+dfsg/src/cogent3/parse/newick.py:180: sentinals ==> sentinels
data/python-cogent-2020.2.7a+dfsg/src/cogent3/parse/newick.py:183: sentinals ==> sentinels
data/python-cogent-2020.2.7a+dfsg/src/cogent3/parse/newick.py:186: sentinals ==> sentinels
data/python-cogent-2020.2.7a+dfsg/src/cogent3/parse/newick.py:191: sentinals ==> sentinels
data/python-cogent-2020.2.7a+dfsg/src/cogent3/parse/paml_matrix.py:33: symetric ==> symmetric
data/python-cogent-2020.2.7a+dfsg/src/cogent3/parse/phylip.py:124: aligment ==> alignment
data/python-cogent-2020.2.7a+dfsg/src/cogent3/parse/record.py:434: appropiately ==> appropriately
data/python-cogent-2020.2.7a+dfsg/src/cogent3/parse/record_finder.py:14: constuctor ==> constructor
data/python-cogent-2020.2.7a+dfsg/src/cogent3/parse/table.py:130: convertor ==> converter
data/python-cogent-2020.2.7a+dfsg/src/cogent3/phylo/nj.py:232: interupted ==> interrupted
data/python-cogent-2020.2.7a+dfsg/src/cogent3/recalculation/calculation.py:308: egde ==> edge
data/python-cogent-2020.2.7a+dfsg/src/cogent3/recalculation/calculation.py:330: groupd ==> grouped
data/python-cogent-2020.2.7a+dfsg/src/cogent3/recalculation/calculation.py:334: groupd ==> grouped
data/python-cogent-2020.2.7a+dfsg/src/cogent3/recalculation/calculation.py:337: groupd ==> grouped
data/python-cogent-2020.2.7a+dfsg/src/cogent3/recalculation/calculation.py:338: groupd ==> grouped
data/python-cogent-2020.2.7a+dfsg/src/cogent3/recalculation/calculation.py:540: elipsis ==> ellipsis, eclipses
data/python-cogent-2020.2.7a+dfsg/src/cogent3/recalculation/calculation.py:541: elipsis ==> ellipsis, eclipses
data/python-cogent-2020.2.7a+dfsg/src/cogent3/recalculation/calculation.py:563: achive ==> achieve, archive
data/python-cogent-2020.2.7a+dfsg/src/cogent3/recalculation/definition.py:9: cachable ==> cacheable
data/python-cogent-2020.2.7a+dfsg/src/cogent3/recalculation/definition.py:589: guarenteed ==> guaranteed
data/python-cogent-2020.2.7a+dfsg/src/cogent3/recalculation/scope.py:501: overriden ==> overridden
data/python-cogent-2020.2.7a+dfsg/src/cogent3/recalculation/scope.py:501: constuctor ==> constructor
data/python-cogent-2020.2.7a+dfsg/src/cogent3/util/misc.py:291: funtion ==> function
data/python-cogent-2020.2.7a+dfsg/src/cogent3/util/misc.py:329: lenth ==> length
data/python-cogent-2020.2.7a+dfsg/src/cogent3/util/misc.py:609: Constrant ==> Constraint
data/python-cogent-2020.2.7a+dfsg/src/cogent3/util/recode_alignment.py:28: characeters ==> characters
data/python-cogent-2020.2.7a+dfsg/src/cogent3/util/recode_alignment.py:388: definiton ==> definition
data/python-cogent-2020.2.7a+dfsg/src/cogent3/util/recode_alignment.py:487: subsitution ==> substitution
data/python-cogent-2020.2.7a+dfsg/src/cogent3/util/recode_alignment.py:530: substituion ==> substitution
data/python-cogent-2020.2.7a+dfsg/src/cogent3/util/table.py:400: supercedes ==> supersedes
data/python-cogent-2020.2.7a+dfsg/src/cogent3/util/unit_test.py:12: possiblities ==> possibilities
data/python-cogent-2020.2.7a+dfsg/src/cogent3/util/unit_test.py:177: explict ==> explicit
data/python-cogent-2020.2.7a+dfsg/tests/test_recalculation.py:139: bellow ==> below
data/python-cogent-2020.2.7a+dfsg/tests/data/1A1X.pdb:275: SER ==> SET
data/python-cogent-2020.2.7a+dfsg/tests/data/1A1X.pdb:295: SER ==> SET
data/python-cogent-2020.2.7a+dfsg/tests/data/1A1X.pdb:297: SER ==> SET
data/python-cogent-2020.2.7a+dfsg/tests/data/1A1X.pdb:299: SER ==> SET
data/python-cogent-2020.2.7a+dfsg/tests/data/1A1X.pdb:299: SER ==> SET
data/python-cogent-2020.2.7a+dfsg/tests/data/1A1X.pdb:301: SER ==> SET
data/python-cogent-2020.2.7a+dfsg/tests/data/1A1X.pdb:618: SER ==> SET
data/python-cogent-2020.2.7a+dfsg/tests/data/1A1X.pdb:619: SER ==> SET
data/python-cogent-2020.2.7a+dfsg/tests/data/1A1X.pdb:620: SER ==> SET
data/python-cogent-2020.2.7a+dfsg/tests/data/1A1X.pdb:621: SER ==> SET
data/python-cogent-2020.2.7a+dfsg/tests/data/1A1X.pdb:622: SER ==> SET
data/python-cogent-2020.2.7a+dfsg/tests/data/1A1X.pdb:623: SER ==> SET
data/python-cogent-2020.2.7a+dfsg/tests/data/1A1X.pdb:774: SER ==> SET
data/python-cogent-2020.2.7a+dfsg/tests/data/1A1X.pdb:775: SER ==> SET
data/python-cogent-2020.2.7a+dfsg/tests/data/1A1X.pdb:776: SER ==> SET
data/python-cogent-2020.2.7a+dfsg/tests/data/1A1X.pdb:777: SER ==> SET
data/python-cogent-2020.2.7a+dfsg/tests/data/1A1X.pdb:778: SER ==> SET
data/python-cogent-2020.2.7a+dfsg/tests/data/1A1X.pdb:779: SER ==> SET
data/python-cogent-2020.2.7a+dfsg/tests/data/1A1X.pdb:813: SER ==> SET
data/python-cogent-2020.2.7a+dfsg/tests/data/1A1X.pdb:814: SER ==> SET
data/python-cogent-2020.2.7a+dfsg/tests/data/1A1X.pdb:815: SER ==> SET
data/python-cogent-2020.2.7a+dfsg/tests/data/1A1X.pdb:816: SER ==> SET
data/python-cogent-2020.2.7a+dfsg/tests/data/1A1X.pdb:817: SER ==> SET
data/python-cogent-2020.2.7a+dfsg/tests/data/1A1X.pdb:818: SER ==> SET
data/python-cogent-2020.2.7a+dfsg/tests/data/1A1X.pdb:982: SER ==> SET
data/python-cogent-2020.2.7a+dfsg/tests/data/1A1X.pdb:983: SER ==> SET
data/python-cogent-2020.2.7a+dfsg/tests/data/1A1X.pdb:984: SER ==> SET
data/python-cogent-2020.2.7a+dfsg/tests/data/1A1X.pdb:985: SER ==> SET
data/python-cogent-2020.2.7a+dfsg/tests/data/1A1X.pdb:986: SER ==> SET
data/python-cogent-2020.2.7a+dfsg/tests/data/1A1X.pdb:987: SER ==> SET
data/python-cogent-2020.2.7a+dfsg/tests/data/1LJO.pdb:362: SER ==> SET
data/python-cogent-2020.2.7a+dfsg/tests/data/1LJO.pdb:366: SER ==> SET
data/python-cogent-2020.2.7a+dfsg/tests/data/1LJO.pdb:385: SER ==> SET
data/python-cogent-2020.2.7a+dfsg/tests/data/1LJO.pdb:475: SER ==> SET
data/python-cogent-2020.2.7a+dfsg/tests/data/1LJO.pdb:476: SER ==> SET
data/python-cogent-2020.2.7a+dfsg/tests/data/1LJO.pdb:477: SER ==> SET
data/python-cogent-2020.2.7a+dfsg/tests/data/1LJO.pdb:478: SER ==> SET
data/python-cogent-2020.2.7a+dfsg/tests/data/1LJO.pdb:479: SER ==> SET
data/python-cogent-2020.2.7a+dfsg/tests/data/1LJO.pdb:480: SER ==> SET
data/python-cogent-2020.2.7a+dfsg/tests/data/1LJO.pdb:837: SER ==> SET
data/python-cogent-2020.2.7a+dfsg/tests/data/1LJO.pdb:838: SER ==> SET
data/python-cogent-2020.2.7a+dfsg/tests/data/1LJO.pdb:839: SER ==> SET
data/python-cogent-2020.2.7a+dfsg/tests/data/1LJO.pdb:840: SER ==> SET
data/python-cogent-2020.2.7a+dfsg/tests/data/1LJO.pdb:841: SER ==> SET
data/python-cogent-2020.2.7a+dfsg/tests/data/1LJO.pdb:842: SER ==> SET
data/python-cogent-2020.2.7a+dfsg/tests/data/1LJO.pdb:1020: CONECT ==> CONNECT
data/python-cogent-2020.2.7a+dfsg/tests/data/1LJO.pdb:1021: CONECT ==> CONNECT
data/python-cogent-2020.2.7a+dfsg/tests/data/1LJO.pdb:1022: CONECT ==> CONNECT
data/python-cogent-2020.2.7a+dfsg/tests/data/1LJO.pdb:1023: CONECT ==> CONNECT
data/python-cogent-2020.2.7a+dfsg/tests/data/1LJO.pdb:1024: CONECT ==> CONNECT
data/python-cogent-2020.2.7a+dfsg/tests/data/1LJO.pdb:1025: CONECT ==> CONNECT
data/python-cogent-2020.2.7a+dfsg/tests/data/1LJO.pdb:1026: CONECT ==> CONNECT
data/python-cogent-2020.2.7a+dfsg/tests/data/1LJO.pdb:1027: CONECT ==> CONNECT
data/python-cogent-2020.2.7a+dfsg/tests/data/1LJO.pdb:1028: CONECT ==> CONNECT
data/python-cogent-2020.2.7a+dfsg/tests/data/1LJO.pdb:1029: CONECT ==> CONNECT
data/python-cogent-2020.2.7a+dfsg/tests/data/1LJO.pdb:1030: CONECT ==> CONNECT
data/python-cogent-2020.2.7a+dfsg/tests/data/1LJO.pdb:1031: CONECT ==> CONNECT
data/python-cogent-2020.2.7a+dfsg/tests/data/2E12.pdb:289: SER ==> SET
data/python-cogent-2020.2.7a+dfsg/tests/data/2E12.pdb:337: SER ==> SET
data/python-cogent-2020.2.7a+dfsg/tests/data/2E12.pdb:339: SER ==> SET
data/python-cogent-2020.2.7a+dfsg/tests/data/2E12.pdb:340: SER ==> SET
data/python-cogent-2020.2.7a+dfsg/tests/data/2E12.pdb:345: SER ==> SET
data/python-cogent-2020.2.7a+dfsg/tests/data/2E12.pdb:347: SER ==> SET
data/python-cogent-2020.2.7a+dfsg/tests/data/2E12.pdb:348: SER ==> SET
data/python-cogent-2020.2.7a+dfsg/tests/data/2E12.pdb:689: SER ==> SET
data/python-cogent-2020.2.7a+dfsg/tests/data/2E12.pdb:690: SER ==> SET
data/python-cogent-2020.2.7a+dfsg/tests/data/2E12.pdb:691: SER ==> SET
data/python-cogent-2020.2.7a+dfsg/tests/data/2E12.pdb:692: SER ==> SET
data/python-cogent-2020.2.7a+dfsg/tests/data/2E12.pdb:693: SER ==> SET
data/python-cogent-2020.2.7a+dfsg/tests/data/2E12.pdb:694: SER ==> SET
data/python-cogent-2020.2.7a+dfsg/tests/data/2E12.pdb:877: SER ==> SET
data/python-cogent-2020.2.7a+dfsg/tests/data/2E12.pdb:878: SER ==> SET
data/python-cogent-2020.2.7a+dfsg/tests/data/2E12.pdb:879: SER ==> SET
data/python-cogent-2020.2.7a+dfsg/tests/data/2E12.pdb:880: SER ==> SET
data/python-cogent-2020.2.7a+dfsg/tests/data/2E12.pdb:881: SER ==> SET
data/python-cogent-2020.2.7a+dfsg/tests/data/2E12.pdb:882: SER ==> SET
data/python-cogent-2020.2.7a+dfsg/tests/data/2E12.pdb:970: SER ==> SET
data/python-cogent-2020.2.7a+dfsg/tests/data/2E12.pdb:971: SER ==> SET
data/python-cogent-2020.2.7a+dfsg/tests/data/2E12.pdb:972: SER ==> SET
data/python-cogent-2020.2.7a+dfsg/tests/data/2E12.pdb:973: SER ==> SET
data/python-cogent-2020.2.7a+dfsg/tests/data/2E12.pdb:974: SER ==> SET
data/python-cogent-2020.2.7a+dfsg/tests/data/2E12.pdb:975: SER ==> SET
data/python-cogent-2020.2.7a+dfsg/tests/data/2E12.pdb:1446: SER ==> SET
data/python-cogent-2020.2.7a+dfsg/tests/data/2E12.pdb:1447: SER ==> SET
data/python-cogent-2020.2.7a+dfsg/tests/data/2E12.pdb:1448: SER ==> SET
data/python-cogent-2020.2.7a+dfsg/tests/data/2E12.pdb:1449: SER ==> SET
data/python-cogent-2020.2.7a+dfsg/tests/data/2E12.pdb:1450: SER ==> SET
data/python-cogent-2020.2.7a+dfsg/tests/data/2E12.pdb:1451: SER ==> SET
data/python-cogent-2020.2.7a+dfsg/tests/data/2E12.pdb:1634: SER ==> SET
data/python-cogent-2020.2.7a+dfsg/tests/data/2E12.pdb:1635: SER ==> SET
data/python-cogent-2020.2.7a+dfsg/tests/data/2E12.pdb:1636: SER ==> SET
data/python-cogent-2020.2.7a+dfsg/tests/data/2E12.pdb:1637: SER ==> SET
data/python-cogent-2020.2.7a+dfsg/tests/data/2E12.pdb:1638: SER ==> SET
data/python-cogent-2020.2.7a+dfsg/tests/data/2E12.pdb:1639: SER ==> SET
data/python-cogent-2020.2.7a+dfsg/tests/data/2E12.pdb:1727: SER ==> SET
data/python-cogent-2020.2.7a+dfsg/tests/data/2E12.pdb:1728: SER ==> SET
data/python-cogent-2020.2.7a+dfsg/tests/data/2E12.pdb:1729: SER ==> SET
data/python-cogent-2020.2.7a+dfsg/tests/data/2E12.pdb:1730: SER ==> SET
data/python-cogent-2020.2.7a+dfsg/tests/data/2E12.pdb:1731: SER ==> SET
data/python-cogent-2020.2.7a+dfsg/tests/data/2E12.pdb:1732: SER ==> SET
data/python-cogent-2020.2.7a+dfsg/tests/data/Homo_sapiens_codon_usage.pri:185: comlete ==> complete
data/python-cogent-2020.2.7a+dfsg/tests/data/Homo_sapiens_codon_usage.pri:639: Ser ==> Set
data/python-cogent-2020.2.7a+dfsg/tests/data/Homo_sapiens_codon_usage.pri:1685: andthe ==> and the
data/python-cogent-2020.2.7a+dfsg/tests/data/Homo_sapiens_codon_usage.pri:1707: fpr ==> for, far, fps
data/python-cogent-2020.2.7a+dfsg/tests/data/Homo_sapiens_codon_usage.pri:1929: SELT ==> SET, SELF, SOLD
data/python-cogent-2020.2.7a+dfsg/tests/data/annotated_seq.gb:23: Suh ==> Such
data/python-cogent-2020.2.7a+dfsg/tests/test_align/test_align.py:176: excercise ==> exercise
data/python-cogent-2020.2.7a+dfsg/tests/test_align/test_align.py:203: excercise ==> exercise
data/python-cogent-2020.2.7a+dfsg/tests/test_app/test_composable.py:181: excercise ==> exercise
data/python-cogent-2020.2.7a+dfsg/tests/test_app/test_data_store.py:638: summmary ==> summary
data/python-cogent-2020.2.7a+dfsg/tests/test_app/test_evo.py:650: nd ==> and, 2nd
data/python-cogent-2020.2.7a+dfsg/tests/test_app/test_evo.py:651: nd ==> and, 2nd
data/python-cogent-2020.2.7a+dfsg/tests/test_app/test_sample.py:185: incorect ==> incorrect
data/python-cogent-2020.2.7a+dfsg/tests/test_app/test_sample.py:211: satisifies ==> satisfies
data/python-cogent-2020.2.7a+dfsg/tests/test_app/test_sample.py:256: satisifies ==> satisfies
data/python-cogent-2020.2.7a+dfsg/tests/test_app/test_translate.py:97: translater ==> translator
data/python-cogent-2020.2.7a+dfsg/tests/test_app/test_translate.py:98: translater ==> translator
data/python-cogent-2020.2.7a+dfsg/tests/test_app/test_translate.py:102: translater ==> translator
data/python-cogent-2020.2.7a+dfsg/tests/test_app/test_translate.py:103: translater ==> translator
data/python-cogent-2020.2.7a+dfsg/tests/test_app/test_translate.py:111: translater ==> translator
data/python-cogent-2020.2.7a+dfsg/tests/test_app/test_translate.py:112: translater ==> translator
data/python-cogent-2020.2.7a+dfsg/tests/test_app/test_translate.py:118: translater ==> translator
data/python-cogent-2020.2.7a+dfsg/tests/test_core/test_alignment.py:399: ANS ==> AND
data/python-cogent-2020.2.7a+dfsg/tests/test_core/test_alignment.py:1127: retun ==> return
data/python-cogent-2020.2.7a+dfsg/tests/test_core/test_alignment.py:1808: BA ==> BY, BE
data/python-cogent-2020.2.7a+dfsg/tests/test_core/test_alignment.py:2166: paln ==> plan, pain, palm
data/python-cogent-2020.2.7a+dfsg/tests/test_core/test_alignment.py:2167: paln ==> plan, pain, palm
data/python-cogent-2020.2.7a+dfsg/tests/test_core/test_alignment.py:2195: paln ==> plan, pain, palm
data/python-cogent-2020.2.7a+dfsg/tests/test_core/test_alignment.py:2196: paln ==> plan, pain, palm
data/python-cogent-2020.2.7a+dfsg/tests/test_core/test_alignment.py:2197: paln ==> plan, pain, palm
data/python-cogent-2020.2.7a+dfsg/tests/test_core/test_alignment.py:2199: paln ==> plan, pain, palm
data/python-cogent-2020.2.7a+dfsg/tests/test_core/test_alignment.py:3231: Intialize ==> Initialize
data/python-cogent-2020.2.7a+dfsg/tests/test_core/test_moltype.py:328: USNG ==> USING
data/python-cogent-2020.2.7a+dfsg/tests/test_core/test_profile.py:197: indexs ==> indexes, indices
data/python-cogent-2020.2.7a+dfsg/tests/test_core/test_profile.py:372: substract ==> subtract
data/python-cogent-2020.2.7a+dfsg/tests/test_core/test_sequence.py:257: USNG ==> USING
data/python-cogent-2020.2.7a+dfsg/tests/test_core/test_tree.py:1433: specifc ==> specific
data/python-cogent-2020.2.7a+dfsg/tests/test_core/test_tree.py:1624: correclty ==> correctly
data/python-cogent-2020.2.7a+dfsg/tests/test_evolve/test_coevolution.py:301: BA ==> BY, BE
data/python-cogent-2020.2.7a+dfsg/tests/test_evolve/test_coevolution.py:308: BA ==> BY, BE
data/python-cogent-2020.2.7a+dfsg/tests/test_evolve/test_coevolution.py:662: BA ==> BY, BE
data/python-cogent-2020.2.7a+dfsg/tests/test_evolve/test_coevolution.py:666: caluclated ==> calculated
data/python-cogent-2020.2.7a+dfsg/tests/test_evolve/test_coevolution.py:1250: paramters ==> parameters
data/python-cogent-2020.2.7a+dfsg/tests/test_evolve/test_coevolution.py:1433: defualt ==> default
data/python-cogent-2020.2.7a+dfsg/tests/test_evolve/test_coevolution.py:1481: defualt ==> default
data/python-cogent-2020.2.7a+dfsg/tests/test_evolve/test_coevolution.py:1516: defualt ==> default
data/python-cogent-2020.2.7a+dfsg/tests/test_evolve/test_coevolution.py:1542: defualt ==> default
data/python-cogent-2020.2.7a+dfsg/tests/test_evolve/test_coevolution.py:1999: alpabet ==> alphabet
data/python-cogent-2020.2.7a+dfsg/tests/test_evolve/test_coevolution.py:2016: alpabet ==> alphabet
data/python-cogent-2020.2.7a+dfsg/tests/test_evolve/test_coevolution.py:2040: BA ==> BY, BE
data/python-cogent-2020.2.7a+dfsg/tests/test_evolve/test_coevolution.py:2068: BA ==> BY, BE
data/python-cogent-2020.2.7a+dfsg/tests/test_evolve/test_coevolution.py:2110: controled ==> controlled
data/python-cogent-2020.2.7a+dfsg/tests/test_evolve/test_coevolution.py:2117: truely ==> truly
data/python-cogent-2020.2.7a+dfsg/tests/test_evolve/test_coevolution.py:2126: truely ==> truly
data/python-cogent-2020.2.7a+dfsg/tests/test_evolve/test_distance.py:789: excercise ==> exercise
data/python-cogent-2020.2.7a+dfsg/tests/test_evolve/test_distance.py:828: Excercising ==> Exercising
data/python-cogent-2020.2.7a+dfsg/tests/test_evolve/test_likelihood_function.py:385: actualy ==> actually
data/python-cogent-2020.2.7a+dfsg/tests/test_evolve/test_likelihood_function.py:470: excercising ==> exercising
data/python-cogent-2020.2.7a+dfsg/tests/test_evolve/test_likelihood_function.py:711: excercise ==> exercise
data/python-cogent-2020.2.7a+dfsg/tests/test_evolve/test_models.py:47: excercising ==> exercising
data/python-cogent-2020.2.7a+dfsg/tests/test_evolve/test_models.py:54: excercising ==> exercising
data/python-cogent-2020.2.7a+dfsg/tests/test_evolve/test_models.py:71: excercising ==> exercising
data/python-cogent-2020.2.7a+dfsg/tests/test_evolve/test_newq.py:396: imlemented ==> implemented
data/python-cogent-2020.2.7a+dfsg/tests/test_evolve/test_substitution_model.py:332: thirs ==> third, thirst
data/python-cogent-2020.2.7a+dfsg/tests/test_maths/test_distance_transform.py:294: OTU ==> OUT
data/python-cogent-2020.2.7a+dfsg/tests/test_maths/test_stats/test_ks.py:179: excercising ==> exercising
data/python-cogent-2020.2.7a+dfsg/tests/test_maths/test_stats/test_special.py:67: permuations ==> permutations
data/python-cogent-2020.2.7a+dfsg/tests/test_maths/test_stats/test_test.py:1760: excercising ==> exercising
data/python-cogent-2020.2.7a+dfsg/tests/test_parse/test_fasta.py:270: desciption ==> description
data/python-cogent-2020.2.7a+dfsg/tests/test_parse/test_locuslink.py:248: ND ==> AND, 2ND
data/python-cogent-2020.2.7a+dfsg/tests/test_parse/test_locuslink.py:249: ND ==> AND, 2ND
data/python-cogent-2020.2.7a+dfsg/tests/test_parse/test_locuslink.py:502: ND ==> AND, 2ND
data/python-cogent-2020.2.7a+dfsg/tests/test_parse/test_locuslink.py:510: ND ==> AND, 2ND
data/python-cogent-2020.2.7a+dfsg/tests/test_parse/test_pamlmatrix.py:43: Ser ==> Set
data/python-cogent-2020.2.7a+dfsg/tests/test_parse/test_phylip.py:292: Aligment ==> Alignment
data/python-cogent-2020.2.7a+dfsg/tests/test_parse/test_psl.py:28: mis-match ==> mismatch
data/python-cogent-2020.2.7a+dfsg/tests/test_parse/test_pwm_parsers.py:39: wights ==> weights, whites, rights, writes
data/python-cogent-2020.2.7a+dfsg/tests/test_parse/test_rdb.py:122: lables ==> labels
data/python-cogent-2020.2.7a+dfsg/tests/test_parse/test_rdb.py:185: lables ==> labels
data/python-cogent-2020.2.7a+dfsg/tests/test_util/test_deserialise.py:193: fro ==> for, from
data/python-cogent-2020.2.7a+dfsg/tests/test_util/test_misc.py:495: setted ==> set
data/python-cogent-2020.2.7a+dfsg/tests/test_util/test_union_dict.py:86: propogated ==> propagated
data/python-cogent-2020.2.7a+dfsg/debian/README.source:1: stoped ==> stopped
data/python-cogent-2020.2.7a+dfsg/debian/patches/3bc0a8a413cb82ec6a3e86beaa0e2e71ad8ed3fb.patch:10: asbolute ==> absolute
data/python-cogent-2020.2.7a+dfsg/debian/patches/9ea740ee6a936895f68af59537fd6171803aa7e6.patch:9: asbolute ==> absolute
data/python-cogent-2020.2.7a+dfsg/.pc/fix_interpreter.patch/src/cogent3/align/dp_calculation.py:61: potentialy ==> potentially