data/r-bioc-biostrings-2.58.0/CHANGES:102: temporarly ==> temporarily, temporary
data/r-bioc-biostrings-2.58.0/TODO:188: cannnot ==> cannot
data/r-bioc-biostrings-2.58.0/R/AMINO_ACID_CODE.R:21: Ser ==> Set
data/r-bioc-biostrings-2.58.0/R/AlignedXStringSet-class.R:32: ans ==> and
data/r-bioc-biostrings-2.58.0/R/AlignedXStringSet-class.R:34: ans ==> and
data/r-bioc-biostrings-2.58.0/R/AlignedXStringSet-class.R:34: ans ==> and
data/r-bioc-biostrings-2.58.0/R/AlignedXStringSet-class.R:35: ans ==> and
data/r-bioc-biostrings-2.58.0/R/GENETIC_CODE.R:404: ans ==> and
data/r-bioc-biostrings-2.58.0/R/GENETIC_CODE.R:407: ans ==> and
data/r-bioc-biostrings-2.58.0/R/GENETIC_CODE.R:407: ans ==> and
data/r-bioc-biostrings-2.58.0/R/GENETIC_CODE.R:408: ans ==> and
data/r-bioc-biostrings-2.58.0/R/GENETIC_CODE.R:409: ans ==> and
data/r-bioc-biostrings-2.58.0/R/GENETIC_CODE.R:411: ans ==> and
data/r-bioc-biostrings-2.58.0/R/GENETIC_CODE.R:412: ans ==> and
data/r-bioc-biostrings-2.58.0/R/GENETIC_CODE.R:414: ans ==> and
data/r-bioc-biostrings-2.58.0/R/GENETIC_CODE.R:414: ans ==> and
data/r-bioc-biostrings-2.58.0/R/GENETIC_CODE.R:415: ans ==> and
data/r-bioc-biostrings-2.58.0/R/MIndex-class.R:76: ans ==> and
data/r-bioc-biostrings-2.58.0/R/MIndex-class.R:77: ans ==> and
data/r-bioc-biostrings-2.58.0/R/MIndex-class.R:78: ans ==> and
data/r-bioc-biostrings-2.58.0/R/MIndex-class.R:84: ans ==> and
data/r-bioc-biostrings-2.58.0/R/MIndex-class.R:85: ans ==> and
data/r-bioc-biostrings-2.58.0/R/MIndex-class.R:86: ans ==> and
data/r-bioc-biostrings-2.58.0/R/MIndex-class.R:100: ans ==> and
data/r-bioc-biostrings-2.58.0/R/MIndex-class.R:101: ans ==> and
data/r-bioc-biostrings-2.58.0/R/MIndex-class.R:102: ans ==> and
data/r-bioc-biostrings-2.58.0/R/MIndex-class.R:208: ans ==> and
data/r-bioc-biostrings-2.58.0/R/MIndex-class.R:209: ans ==> and
data/r-bioc-biostrings-2.58.0/R/MIndex-class.R:211: ans ==> and
data/r-bioc-biostrings-2.58.0/R/MaskedXString-class.R:303: ans ==> and
data/r-bioc-biostrings-2.58.0/R/MaskedXString-class.R:307: ans ==> and
data/r-bioc-biostrings-2.58.0/R/MaskedXString-class.R:309: ans ==> and
data/r-bioc-biostrings-2.58.0/R/PDict-class.R:400: ans ==> and
data/r-bioc-biostrings-2.58.0/R/PDict-class.R:405: ans ==> and
data/r-bioc-biostrings-2.58.0/R/PDict-class.R:406: ans ==> and
data/r-bioc-biostrings-2.58.0/R/PDict-class.R:485: ans ==> and
data/r-bioc-biostrings-2.58.0/R/PDict-class.R:489: ans ==> and
data/r-bioc-biostrings-2.58.0/R/PDict-class.R:490: ans ==> and
data/r-bioc-biostrings-2.58.0/R/PairwiseAlignments-class.R:286: ans ==> and
data/r-bioc-biostrings-2.58.0/R/PairwiseAlignments-class.R:294: ans ==> and
data/r-bioc-biostrings-2.58.0/R/PairwiseAlignments-class.R:294: ans ==> and
data/r-bioc-biostrings-2.58.0/R/PairwiseAlignments-class.R:299: ans ==> and
data/r-bioc-biostrings-2.58.0/R/PairwiseAlignments-class.R:299: ans ==> and
data/r-bioc-biostrings-2.58.0/R/PairwiseAlignments-class.R:305: ans ==> and
data/r-bioc-biostrings-2.58.0/R/PairwiseAlignments-class.R:306: ans ==> and
data/r-bioc-biostrings-2.58.0/R/PairwiseAlignments-class.R:306: ans ==> and
data/r-bioc-biostrings-2.58.0/R/PairwiseAlignments-class.R:310: ans ==> and
data/r-bioc-biostrings-2.58.0/R/PairwiseAlignments-class.R:312: ans ==> and
data/r-bioc-biostrings-2.58.0/R/PairwiseAlignments-class.R:312: ans ==> and
data/r-bioc-biostrings-2.58.0/R/PairwiseAlignments-class.R:315: ans ==> and
data/r-bioc-biostrings-2.58.0/R/PairwiseAlignments-class.R:339: ans ==> and
data/r-bioc-biostrings-2.58.0/R/PairwiseAlignments-class.R:348: ans ==> and
data/r-bioc-biostrings-2.58.0/R/PairwiseAlignments-class.R:349: ans ==> and
data/r-bioc-biostrings-2.58.0/R/PairwiseAlignments-class.R:361: ans ==> and
data/r-bioc-biostrings-2.58.0/R/PairwiseAlignments-class.R:370: ans ==> and
data/r-bioc-biostrings-2.58.0/R/PairwiseAlignments-class.R:371: ans ==> and
data/r-bioc-biostrings-2.58.0/R/PairwiseAlignments-io.R:248: 2rd ==> 2nd
data/r-bioc-biostrings-2.58.0/R/PairwiseAlignmentsSingleSubject-class.R:162: nNumber ==> number
data/r-bioc-biostrings-2.58.0/R/SparseList-class.R:46: ans ==> and
data/r-bioc-biostrings-2.58.0/R/SparseList-class.R:49: ans ==> and
data/r-bioc-biostrings-2.58.0/R/SparseList-class.R:50: ans ==> and
data/r-bioc-biostrings-2.58.0/R/XString-class.R:36: ans ==> and
data/r-bioc-biostrings-2.58.0/R/XString-class.R:37: ans ==> and
data/r-bioc-biostrings-2.58.0/R/XString-class.R:83: ans ==> and
data/r-bioc-biostrings-2.58.0/R/XString-class.R:85: ans ==> and
data/r-bioc-biostrings-2.58.0/R/XString-class.R:91: ans ==> and
data/r-bioc-biostrings-2.58.0/R/XString-class.R:93: ans ==> and
data/r-bioc-biostrings-2.58.0/R/XString-class.R:104: ans ==> and
data/r-bioc-biostrings-2.58.0/R/XString-class.R:105: ans ==> and
data/r-bioc-biostrings-2.58.0/R/XString-class.R:106: ans ==> and
data/r-bioc-biostrings-2.58.0/R/XString-class.R:126: ans ==> and
data/r-bioc-biostrings-2.58.0/R/XString-class.R:127: ans ==> and
data/r-bioc-biostrings-2.58.0/R/XString-class.R:128: ans ==> and
data/r-bioc-biostrings-2.58.0/R/XString-class.R:174: ans ==> and
data/r-bioc-biostrings-2.58.0/R/XString-class.R:175: ans ==> and
data/r-bioc-biostrings-2.58.0/R/XString-class.R:176: ans ==> and
data/r-bioc-biostrings-2.58.0/R/XString-class.R:235: ans ==> and
data/r-bioc-biostrings-2.58.0/R/XString-class.R:241: ans ==> and
data/r-bioc-biostrings-2.58.0/R/XString-class.R:242: ans ==> and
data/r-bioc-biostrings-2.58.0/R/XString-class.R:252: unsuported ==> unsupported
data/r-bioc-biostrings-2.58.0/R/XString-class.R:314: ans ==> and
data/r-bioc-biostrings-2.58.0/R/XString-class.R:317: ans ==> and
data/r-bioc-biostrings-2.58.0/R/XString-class.R:317: ans ==> and
data/r-bioc-biostrings-2.58.0/R/XString-class.R:318: ans ==> and
data/r-bioc-biostrings-2.58.0/R/XString-class.R:322: ans ==> and
data/r-bioc-biostrings-2.58.0/R/XString-class.R:323: ans ==> and
data/r-bioc-biostrings-2.58.0/R/XString-class.R:324: ans ==> and
data/r-bioc-biostrings-2.58.0/R/XString-class.R:348: ans ==> and
data/r-bioc-biostrings-2.58.0/R/XString-class.R:352: ans ==> and
data/r-bioc-biostrings-2.58.0/R/XString-class.R:358: ans ==> and
data/r-bioc-biostrings-2.58.0/R/XString-class.R:358: ans ==> and
data/r-bioc-biostrings-2.58.0/R/XString-class.R:360: ans ==> and
data/r-bioc-biostrings-2.58.0/R/XString-class.R:376: ans ==> and
data/r-bioc-biostrings-2.58.0/R/XString-class.R:377: ans ==> and
data/r-bioc-biostrings-2.58.0/R/XString-class.R:377: ans ==> and
data/r-bioc-biostrings-2.58.0/R/XString-class.R:378: ans ==> and
data/r-bioc-biostrings-2.58.0/R/XString-class.R:407: ans ==> and
data/r-bioc-biostrings-2.58.0/R/XString-class.R:408: ans ==> and
data/r-bioc-biostrings-2.58.0/R/XStringCodec-class.R:72: ans ==> and
data/r-bioc-biostrings-2.58.0/R/XStringCodec-class.R:73: ans ==> and
data/r-bioc-biostrings-2.58.0/R/XStringCodec-class.R:74: ans ==> and
data/r-bioc-biostrings-2.58.0/R/XStringCodec-class.R:75: ans ==> and
data/r-bioc-biostrings-2.58.0/R/XStringPartialMatches-class.R:60: ans ==> and
data/r-bioc-biostrings-2.58.0/R/XStringPartialMatches-class.R:61: ans ==> and
data/r-bioc-biostrings-2.58.0/R/XStringPartialMatches-class.R:61: ans ==> and
data/r-bioc-biostrings-2.58.0/R/XStringPartialMatches-class.R:62: ans ==> and
data/r-bioc-biostrings-2.58.0/R/XStringQuality-class.R:110: ans ==> and
data/r-bioc-biostrings-2.58.0/R/XStringQuality-class.R:111: ans ==> and
data/r-bioc-biostrings-2.58.0/R/XStringQuality-class.R:112: ans ==> and
data/r-bioc-biostrings-2.58.0/R/XStringQuality-class.R:132: ans ==> and
data/r-bioc-biostrings-2.58.0/R/XStringQuality-class.R:134: ans ==> and
data/r-bioc-biostrings-2.58.0/R/XStringQuality-class.R:135: ans ==> and
data/r-bioc-biostrings-2.58.0/R/XStringSet-class.R:213: ans ==> and
data/r-bioc-biostrings-2.58.0/R/XStringSet-class.R:214: ans ==> and
data/r-bioc-biostrings-2.58.0/R/XStringSet-class.R:215: ans ==> and
data/r-bioc-biostrings-2.58.0/R/XStringSet-class.R:265: ans ==> and
data/r-bioc-biostrings-2.58.0/R/XStringSet-class.R:272: ans ==> and
data/r-bioc-biostrings-2.58.0/R/XStringSet-class.R:276: ans ==> and
data/r-bioc-biostrings-2.58.0/R/XStringSet-class.R:278: ans ==> and
data/r-bioc-biostrings-2.58.0/R/XStringSet-class.R:296: ans ==> and
data/r-bioc-biostrings-2.58.0/R/XStringSet-class.R:298: ans ==> and
data/r-bioc-biostrings-2.58.0/R/XStringSet-class.R:305: ans ==> and
data/r-bioc-biostrings-2.58.0/R/XStringSet-class.R:307: ans ==> and
data/r-bioc-biostrings-2.58.0/R/XStringSet-class.R:319: ans ==> and
data/r-bioc-biostrings-2.58.0/R/XStringSet-class.R:325: ans ==> and
data/r-bioc-biostrings-2.58.0/R/XStringSet-class.R:326: ans ==> and
data/r-bioc-biostrings-2.58.0/R/XStringSet-class.R:353: unsuported ==> unsupported
data/r-bioc-biostrings-2.58.0/R/XStringSet-class.R:538: ans ==> and
data/r-bioc-biostrings-2.58.0/R/XStringSet-class.R:542: ans ==> and
data/r-bioc-biostrings-2.58.0/R/XStringSet-class.R:543: ans ==> and
data/r-bioc-biostrings-2.58.0/R/XStringSet-io.R:66: ans ==> and
data/r-bioc-biostrings-2.58.0/R/XStringSet-io.R:72: ans ==> and
data/r-bioc-biostrings-2.58.0/R/XStringSet-io.R:72: ans ==> and
data/r-bioc-biostrings-2.58.0/R/XStringSet-io.R:73: ans ==> and
data/r-bioc-biostrings-2.58.0/R/XStringSet-io.R:84: ans ==> and
data/r-bioc-biostrings-2.58.0/R/XStringSet-io.R:86: ans ==> and
data/r-bioc-biostrings-2.58.0/R/XStringSet-io.R:87: ans ==> and
data/r-bioc-biostrings-2.58.0/R/XStringSet-io.R:192: ans ==> and
data/r-bioc-biostrings-2.58.0/R/XStringSet-io.R:196: ans ==> and
data/r-bioc-biostrings-2.58.0/R/XStringSet-io.R:197: ans ==> and
data/r-bioc-biostrings-2.58.0/R/XStringSet-io.R:220: ans ==> and
data/r-bioc-biostrings-2.58.0/R/XStringSet-io.R:221: ans ==> and
data/r-bioc-biostrings-2.58.0/R/XStringSet-io.R:222: ans ==> and
data/r-bioc-biostrings-2.58.0/R/XStringSet-io.R:263: ans ==> and
data/r-bioc-biostrings-2.58.0/R/XStringSet-io.R:264: ans ==> and
data/r-bioc-biostrings-2.58.0/R/XStringSet-io.R:265: ans ==> and
data/r-bioc-biostrings-2.58.0/R/XStringSet-io.R:291: ans ==> and
data/r-bioc-biostrings-2.58.0/R/XStringSet-io.R:295: ans ==> and
data/r-bioc-biostrings-2.58.0/R/XStringSet-io.R:303: ans ==> and
data/r-bioc-biostrings-2.58.0/R/XStringSet-io.R:306: ans ==> and
data/r-bioc-biostrings-2.58.0/R/XStringSetList-class.R:103: ans ==> and
data/r-bioc-biostrings-2.58.0/R/XStringSetList-class.R:105: ans ==> and
data/r-bioc-biostrings-2.58.0/R/XStringSetList-class.R:106: ans ==> and
data/r-bioc-biostrings-2.58.0/R/XStringSetList-class.R:147: ans ==> and
data/r-bioc-biostrings-2.58.0/R/XStringSetList-class.R:149: ans ==> and
data/r-bioc-biostrings-2.58.0/R/XStringSetList-class.R:150: ans ==> and
data/r-bioc-biostrings-2.58.0/R/XStringViews-class.R:62: ans ==> and
data/r-bioc-biostrings-2.58.0/R/XStringViews-class.R:63: ans ==> and
data/r-bioc-biostrings-2.58.0/R/XStringViews-class.R:63: ans ==> and
data/r-bioc-biostrings-2.58.0/R/XStringViews-class.R:64: ans ==> and
data/r-bioc-biostrings-2.58.0/R/XStringViews-class.R:195: ans ==> and
data/r-bioc-biostrings-2.58.0/R/XStringViews-class.R:199: ans ==> and
data/r-bioc-biostrings-2.58.0/R/XStringViews-class.R:204: ans ==> and
data/r-bioc-biostrings-2.58.0/R/XStringViews-class.R:204: ans ==> and
data/r-bioc-biostrings-2.58.0/R/XStringViews-class.R:205: ans ==> and
data/r-bioc-biostrings-2.58.0/R/XStringViews-class.R:353: ans ==> and
data/r-bioc-biostrings-2.58.0/R/XStringViews-class.R:356: ans ==> and
data/r-bioc-biostrings-2.58.0/R/XStringViews-class.R:365: ans ==> and
data/r-bioc-biostrings-2.58.0/R/XStringViews-class.R:474: Supress ==> Suppress
data/r-bioc-biostrings-2.58.0/R/XStringViews-class.R:479: supress ==> suppress
data/r-bioc-biostrings-2.58.0/R/chartr.R:43: ans ==> and
data/r-bioc-biostrings-2.58.0/R/chartr.R:44: ans ==> and
data/r-bioc-biostrings-2.58.0/R/chartr.R:45: ans ==> and
data/r-bioc-biostrings-2.58.0/R/coloring.R:43: ans ==> and
data/r-bioc-biostrings-2.58.0/R/coloring.R:56: ans ==> and
data/r-bioc-biostrings-2.58.0/R/coloring.R:57: ans ==> and
data/r-bioc-biostrings-2.58.0/R/dinucleotideFrequencyTest.R:6: TOI ==> TO, TOY
data/r-bioc-biostrings-2.58.0/R/dinucleotideFrequencyTest.R:171: ans ==> and
data/r-bioc-biostrings-2.58.0/R/dinucleotideFrequencyTest.R:176: ans ==> and
data/r-bioc-biostrings-2.58.0/R/dinucleotideFrequencyTest.R:177: ans ==> and
data/r-bioc-biostrings-2.58.0/R/dinucleotideFrequencyTest.R:180: ans ==> and
data/r-bioc-biostrings-2.58.0/R/dinucleotideFrequencyTest.R:187: ans ==> and
data/r-bioc-biostrings-2.58.0/R/dinucleotideFrequencyTest.R:193: ans ==> and
data/r-bioc-biostrings-2.58.0/R/dinucleotideFrequencyTest.R:196: ans ==> and
data/r-bioc-biostrings-2.58.0/R/letterFrequency.R:113: ans ==> and
data/r-bioc-biostrings-2.58.0/R/letterFrequency.R:117: ans ==> and
data/r-bioc-biostrings-2.58.0/R/letterFrequency.R:117: ans ==> and
data/r-bioc-biostrings-2.58.0/R/letterFrequency.R:117: ans ==> and
data/r-bioc-biostrings-2.58.0/R/letterFrequency.R:118: ans ==> and
data/r-bioc-biostrings-2.58.0/R/letterFrequency.R:126: ans ==> and
data/r-bioc-biostrings-2.58.0/R/letterFrequency.R:130: ans ==> and
data/r-bioc-biostrings-2.58.0/R/letterFrequency.R:130: ans ==> and
data/r-bioc-biostrings-2.58.0/R/letterFrequency.R:130: ans ==> and
data/r-bioc-biostrings-2.58.0/R/letterFrequency.R:131: ans ==> and
data/r-bioc-biostrings-2.58.0/R/letterFrequency.R:140: ans ==> and
data/r-bioc-biostrings-2.58.0/R/letterFrequency.R:144: ans ==> and
data/r-bioc-biostrings-2.58.0/R/letterFrequency.R:144: ans ==> and
data/r-bioc-biostrings-2.58.0/R/letterFrequency.R:144: ans ==> and
data/r-bioc-biostrings-2.58.0/R/letterFrequency.R:145: ans ==> and
data/r-bioc-biostrings-2.58.0/R/letterFrequency.R:153: ans ==> and
data/r-bioc-biostrings-2.58.0/R/letterFrequency.R:158: ans ==> and
data/r-bioc-biostrings-2.58.0/R/letterFrequency.R:158: ans ==> and
data/r-bioc-biostrings-2.58.0/R/letterFrequency.R:158: ans ==> and
data/r-bioc-biostrings-2.58.0/R/letterFrequency.R:160: ans ==> and
data/r-bioc-biostrings-2.58.0/R/letterFrequency.R:160: ans ==> and
data/r-bioc-biostrings-2.58.0/R/letterFrequency.R:162: ans ==> and
data/r-bioc-biostrings-2.58.0/R/letterFrequency.R:171: ans ==> and
data/r-bioc-biostrings-2.58.0/R/letterFrequency.R:176: ans ==> and
data/r-bioc-biostrings-2.58.0/R/letterFrequency.R:176: ans ==> and
data/r-bioc-biostrings-2.58.0/R/letterFrequency.R:176: ans ==> and
data/r-bioc-biostrings-2.58.0/R/letterFrequency.R:178: ans ==> and
data/r-bioc-biostrings-2.58.0/R/letterFrequency.R:178: ans ==> and
data/r-bioc-biostrings-2.58.0/R/letterFrequency.R:180: ans ==> and
data/r-bioc-biostrings-2.58.0/R/letterFrequency.R:190: ans ==> and
data/r-bioc-biostrings-2.58.0/R/letterFrequency.R:195: ans ==> and
data/r-bioc-biostrings-2.58.0/R/letterFrequency.R:195: ans ==> and
data/r-bioc-biostrings-2.58.0/R/letterFrequency.R:195: ans ==> and
data/r-bioc-biostrings-2.58.0/R/letterFrequency.R:197: ans ==> and
data/r-bioc-biostrings-2.58.0/R/letterFrequency.R:197: ans ==> and
data/r-bioc-biostrings-2.58.0/R/letterFrequency.R:199: ans ==> and
data/r-bioc-biostrings-2.58.0/R/letterFrequency.R:370: ans ==> and
data/r-bioc-biostrings-2.58.0/R/letterFrequency.R:372: ans ==> and
data/r-bioc-biostrings-2.58.0/R/letterFrequency.R:372: ans ==> and
data/r-bioc-biostrings-2.58.0/R/letterFrequency.R:374: ans ==> and
data/r-bioc-biostrings-2.58.0/R/letterFrequency.R:375: ans ==> and
data/r-bioc-biostrings-2.58.0/R/letterFrequency.R:437: ans ==> and
data/r-bioc-biostrings-2.58.0/R/letterFrequency.R:439: ans ==> and
data/r-bioc-biostrings-2.58.0/R/letterFrequency.R:439: ans ==> and
data/r-bioc-biostrings-2.58.0/R/letterFrequency.R:440: ans ==> and
data/r-bioc-biostrings-2.58.0/R/letterFrequency.R:457: ans ==> and
data/r-bioc-biostrings-2.58.0/R/letterFrequency.R:463: ans ==> and
data/r-bioc-biostrings-2.58.0/R/letterFrequency.R:463: ans ==> and
data/r-bioc-biostrings-2.58.0/R/letterFrequency.R:465: ans ==> and
data/r-bioc-biostrings-2.58.0/R/letterFrequency.R:691: ans ==> and
data/r-bioc-biostrings-2.58.0/R/letterFrequency.R:694: ans ==> and
data/r-bioc-biostrings-2.58.0/R/letterFrequency.R:694: ans ==> and
data/r-bioc-biostrings-2.58.0/R/letterFrequency.R:694: ans ==> and
data/r-bioc-biostrings-2.58.0/R/letterFrequency.R:695: ans ==> and
data/r-bioc-biostrings-2.58.0/R/letterFrequency.R:789: ans ==> and
data/r-bioc-biostrings-2.58.0/R/letterFrequency.R:793: ans ==> and
data/r-bioc-biostrings-2.58.0/R/letterFrequency.R:793: ans ==> and
data/r-bioc-biostrings-2.58.0/R/letterFrequency.R:793: ans ==> and
data/r-bioc-biostrings-2.58.0/R/letterFrequency.R:796: ans ==> and
data/r-bioc-biostrings-2.58.0/R/letterFrequency.R:798: ans ==> and
data/r-bioc-biostrings-2.58.0/R/letterFrequency.R:798: ans ==> and
data/r-bioc-biostrings-2.58.0/R/letterFrequency.R:798: ans ==> and
data/r-bioc-biostrings-2.58.0/R/letterFrequency.R:800: ans ==> and
data/r-bioc-biostrings-2.58.0/R/letterFrequency.R:874: ans ==> and
data/r-bioc-biostrings-2.58.0/R/letterFrequency.R:875: ans ==> and
data/r-bioc-biostrings-2.58.0/R/letterFrequency.R:877: ans ==> and
data/r-bioc-biostrings-2.58.0/R/letterFrequency.R:933: ans ==> and
data/r-bioc-biostrings-2.58.0/R/letterFrequency.R:937: ans ==> and
data/r-bioc-biostrings-2.58.0/R/letterFrequency.R:937: ans ==> and
data/r-bioc-biostrings-2.58.0/R/letterFrequency.R:937: ans ==> and
data/r-bioc-biostrings-2.58.0/R/letterFrequency.R:938: ans ==> and
data/r-bioc-biostrings-2.58.0/R/letterFrequency.R:949: ans ==> and
data/r-bioc-biostrings-2.58.0/R/letterFrequency.R:954: ans ==> and
data/r-bioc-biostrings-2.58.0/R/letterFrequency.R:954: ans ==> and
data/r-bioc-biostrings-2.58.0/R/letterFrequency.R:954: ans ==> and
data/r-bioc-biostrings-2.58.0/R/letterFrequency.R:956: ans ==> and
data/r-bioc-biostrings-2.58.0/R/letterFrequency.R:956: ans ==> and
data/r-bioc-biostrings-2.58.0/R/letterFrequency.R:956: ans ==> and
data/r-bioc-biostrings-2.58.0/R/letterFrequency.R:958: ans ==> and
data/r-bioc-biostrings-2.58.0/R/letterFrequency.R:1004: ans ==> and
data/r-bioc-biostrings-2.58.0/R/letterFrequency.R:1008: ans ==> and
data/r-bioc-biostrings-2.58.0/R/letterFrequency.R:1008: ans ==> and
data/r-bioc-biostrings-2.58.0/R/letterFrequency.R:1008: ans ==> and
data/r-bioc-biostrings-2.58.0/R/letterFrequency.R:1010: ans ==> and
data/r-bioc-biostrings-2.58.0/R/lowlevel-matching.R:128: ans ==> and
data/r-bioc-biostrings-2.58.0/R/lowlevel-matching.R:148: ans ==> and
data/r-bioc-biostrings-2.58.0/R/lowlevel-matching.R:165: ans ==> and
data/r-bioc-biostrings-2.58.0/R/lowlevel-matching.R:170: ans ==> and
data/r-bioc-biostrings-2.58.0/R/lowlevel-matching.R:354: ans ==> and
data/r-bioc-biostrings-2.58.0/R/lowlevel-matching.R:371: ans ==> and
data/r-bioc-biostrings-2.58.0/R/lowlevel-matching.R:380: ans ==> and
data/r-bioc-biostrings-2.58.0/R/lowlevel-matching.R:389: ans ==> and
data/r-bioc-biostrings-2.58.0/R/lowlevel-matching.R:398: ans ==> and
data/r-bioc-biostrings-2.58.0/R/lowlevel-matching.R:407: ans ==> and
data/r-bioc-biostrings-2.58.0/R/lowlevel-matching.R:416: ans ==> and
data/r-bioc-biostrings-2.58.0/R/lowlevel-matching.R:451: ans ==> and
data/r-bioc-biostrings-2.58.0/R/lowlevel-matching.R:454: ans ==> and
data/r-bioc-biostrings-2.58.0/R/lowlevel-matching.R:455: ans ==> and
data/r-bioc-biostrings-2.58.0/R/matchPDict.R:371: ans ==> and
data/r-bioc-biostrings-2.58.0/R/matchPDict.R:375: ans ==> and
data/r-bioc-biostrings-2.58.0/R/matchPDict.R:376: ans ==> and
data/r-bioc-biostrings-2.58.0/R/matchPDict.R:427: ans ==> and
data/r-bioc-biostrings-2.58.0/R/matchPDict.R:431: ans ==> and
data/r-bioc-biostrings-2.58.0/R/matchPDict.R:435: ans ==> and
data/r-bioc-biostrings-2.58.0/R/matchPDict.R:439: ans ==> and
data/r-bioc-biostrings-2.58.0/R/matchPDict.R:441: ans ==> and
data/r-bioc-biostrings-2.58.0/R/matchPDict.R:443: ans ==> and
data/r-bioc-biostrings-2.58.0/R/matchPDict.R:443: ans ==> and
data/r-bioc-biostrings-2.58.0/R/matchPDict.R:444: ans ==> and
data/r-bioc-biostrings-2.58.0/R/matchPDict.R:446: ans ==> and
data/r-bioc-biostrings-2.58.0/R/matchPDict.R:447: ans ==> and
data/r-bioc-biostrings-2.58.0/R/matchPDict.R:450: ans ==> and
data/r-bioc-biostrings-2.58.0/R/matchPDict.R:452: ans ==> and
data/r-bioc-biostrings-2.58.0/R/matchPDict.R:573: ans ==> and
data/r-bioc-biostrings-2.58.0/R/matchPDict.R:578: ans ==> and
data/r-bioc-biostrings-2.58.0/R/matchPDict.R:583: ans ==> and
data/r-bioc-biostrings-2.58.0/R/matchPDict.R:588: ans ==> and
data/r-bioc-biostrings-2.58.0/R/matchPDict.R:591: ans ==> and
data/r-bioc-biostrings-2.58.0/R/matchPDict.R:596: ans ==> and
data/r-bioc-biostrings-2.58.0/R/matchPDict.R:596: ans ==> and
data/r-bioc-biostrings-2.58.0/R/matchPDict.R:598: ans ==> and
data/r-bioc-biostrings-2.58.0/R/matchPDict.R:598: ans ==> and
data/r-bioc-biostrings-2.58.0/R/matchPDict.R:600: ans ==> and
data/r-bioc-biostrings-2.58.0/R/matchPDict.R:604: ans ==> and
data/r-bioc-biostrings-2.58.0/R/matchPWM.R:121: ans ==> and
data/r-bioc-biostrings-2.58.0/R/matchPWM.R:122: ans ==> and
data/r-bioc-biostrings-2.58.0/R/matchPWM.R:123: ans ==> and
data/r-bioc-biostrings-2.58.0/R/matchPWM.R:179: ans ==> and
data/r-bioc-biostrings-2.58.0/R/matchPWM.R:181: ans ==> and
data/r-bioc-biostrings-2.58.0/R/matchPWM.R:183: ans ==> and
data/r-bioc-biostrings-2.58.0/R/matchPWM.R:276: ans ==> and
data/r-bioc-biostrings-2.58.0/R/matchPWM.R:279: ans ==> and
data/r-bioc-biostrings-2.58.0/R/matchPWM.R:281: ans ==> and
data/r-bioc-biostrings-2.58.0/R/matchPWM.R:307: ans ==> and
data/r-bioc-biostrings-2.58.0/R/matchPWM.R:310: ans ==> and
data/r-bioc-biostrings-2.58.0/R/matchPWM.R:312: ans ==> and
data/r-bioc-biostrings-2.58.0/R/matchProbePair.R:38: ans ==> and
data/r-bioc-biostrings-2.58.0/R/matchProbePair.R:40: ans ==> and
data/r-bioc-biostrings-2.58.0/R/matchProbePair.R:41: ans ==> and
data/r-bioc-biostrings-2.58.0/R/matchProbePair.R:104: ans ==> and
data/r-bioc-biostrings-2.58.0/R/matchProbePair.R:111: ans ==> and
data/r-bioc-biostrings-2.58.0/R/matchProbePair.R:115: ans ==> and
data/r-bioc-biostrings-2.58.0/R/needwunsQS.R:67: ans ==> and
data/r-bioc-biostrings-2.58.0/R/needwunsQS.R:68: ans ==> and
data/r-bioc-biostrings-2.58.0/R/needwunsQS.R:69: ans ==> and
data/r-bioc-biostrings-2.58.0/R/needwunsQS.R:70: ans ==> and
data/r-bioc-biostrings-2.58.0/R/needwunsQS.R:73: ans ==> and
data/r-bioc-biostrings-2.58.0/R/needwunsQS.R:74: ans ==> and
data/r-bioc-biostrings-2.58.0/R/padAndClip.R:69: Eventhough ==> Even though
data/r-bioc-biostrings-2.58.0/R/padAndClip.R:95: ans ==> and
data/r-bioc-biostrings-2.58.0/R/padAndClip.R:97: ans ==> and
data/r-bioc-biostrings-2.58.0/R/padAndClip.R:98: ans ==> and
data/r-bioc-biostrings-2.58.0/R/padAndClip.R:99: ans ==> and
data/r-bioc-biostrings-2.58.0/R/pmatchPattern.R:110: ans ==> and
data/r-bioc-biostrings-2.58.0/R/pmatchPattern.R:111: ans ==> and
data/r-bioc-biostrings-2.58.0/R/pmatchPattern.R:182: ans ==> and
data/r-bioc-biostrings-2.58.0/R/pmatchPattern.R:183: ans ==> and
data/r-bioc-biostrings-2.58.0/R/pmatchPattern.R:183: ans ==> and
data/r-bioc-biostrings-2.58.0/R/pmatchPattern.R:184: ans ==> and
data/r-bioc-biostrings-2.58.0/R/pmatchPattern.R:185: ans ==> and
data/r-bioc-biostrings-2.58.0/R/pmatchPattern.R:186: ans ==> and
data/r-bioc-biostrings-2.58.0/R/pmatchPattern.R:193: ans ==> and
data/r-bioc-biostrings-2.58.0/R/pmatchPattern.R:194: ans ==> and
data/r-bioc-biostrings-2.58.0/R/pmatchPattern.R:195: ans ==> and
data/r-bioc-biostrings-2.58.0/R/pmatchPattern.R:195: ans ==> and
data/r-bioc-biostrings-2.58.0/R/pmatchPattern.R:196: ans ==> and
data/r-bioc-biostrings-2.58.0/R/replaceAt.R:159: ans ==> and
data/r-bioc-biostrings-2.58.0/R/replaceAt.R:160: ans ==> and
data/r-bioc-biostrings-2.58.0/R/replaceAt.R:161: ans ==> and
data/r-bioc-biostrings-2.58.0/R/replaceAt.R:318: ans ==> and
data/r-bioc-biostrings-2.58.0/R/replaceAt.R:319: ans ==> and
data/r-bioc-biostrings-2.58.0/R/replaceAt.R:320: ans ==> and
data/r-bioc-biostrings-2.58.0/R/replaceAt.R:419: ans ==> and
data/r-bioc-biostrings-2.58.0/R/replaceAt.R:421: ans ==> and
data/r-bioc-biostrings-2.58.0/R/replaceAt.R:422: ans ==> and
data/r-bioc-biostrings-2.58.0/R/replaceAt.R:423: ans ==> and
data/r-bioc-biostrings-2.58.0/R/replaceAt.R:452: ans ==> and
data/r-bioc-biostrings-2.58.0/R/replaceAt.R:456: ans ==> and
data/r-bioc-biostrings-2.58.0/R/replaceAt.R:456: ans ==> and
data/r-bioc-biostrings-2.58.0/R/replaceAt.R:458: ans ==> and
data/r-bioc-biostrings-2.58.0/R/replaceAt.R:460: ans ==> and
data/r-bioc-biostrings-2.58.0/R/translate.R:130: ans ==> and
data/r-bioc-biostrings-2.58.0/R/translate.R:135: ans ==> and
data/r-bioc-biostrings-2.58.0/R/translate.R:136: ans ==> and
data/r-bioc-biostrings-2.58.0/R/translate.R:205: ans ==> and
data/r-bioc-biostrings-2.58.0/R/translate.R:206: ans ==> and
data/r-bioc-biostrings-2.58.0/R/translate.R:208: ans ==> and
data/r-bioc-biostrings-2.58.0/R/trimLRPatterns.R:138: ans ==> and
data/r-bioc-biostrings-2.58.0/R/trimLRPatterns.R:142: ans ==> and
data/r-bioc-biostrings-2.58.0/R/trimLRPatterns.R:143: ans ==> and
data/r-bioc-biostrings-2.58.0/R/trimLRPatterns.R:143: ans ==> and
data/r-bioc-biostrings-2.58.0/R/trimLRPatterns.R:144: ans ==> and
data/r-bioc-biostrings-2.58.0/R/trimLRPatterns.R:170: ans ==> and
data/r-bioc-biostrings-2.58.0/R/trimLRPatterns.R:174: ans ==> and
data/r-bioc-biostrings-2.58.0/R/trimLRPatterns.R:175: ans ==> and
data/r-bioc-biostrings-2.58.0/R/trimLRPatterns.R:175: ans ==> and
data/r-bioc-biostrings-2.58.0/R/trimLRPatterns.R:176: ans ==> and
data/r-bioc-biostrings-2.58.0/R/utils.R:36: ans ==> and
data/r-bioc-biostrings-2.58.0/R/utils.R:38: ans ==> and
data/r-bioc-biostrings-2.58.0/R/utils.R:38: ans ==> and
data/r-bioc-biostrings-2.58.0/R/utils.R:39: ans ==> and
data/r-bioc-biostrings-2.58.0/inst/doc/Biostrings2Classes.Rnw:80: instanciated ==> instantiated
data/r-bioc-biostrings-2.58.0/inst/doc/MultipleAlignments.Rnw:179: occurances ==> occurrences
data/r-bioc-biostrings-2.58.0/inst/doc/MultipleAlignments.Rnw:187: collumns ==> columns
data/r-bioc-biostrings-2.58.0/inst/doc/PairwiseAlignments.Rnw:189: tranlates ==> translates
data/r-bioc-biostrings-2.58.0/inst/doc/matchprobes.Rnw:93: explicitely ==> explicitly
data/r-bioc-biostrings-2.58.0/inst/doc/matchprobes.Rnw:185: explicitely ==> explicitly
data/r-bioc-biostrings-2.58.0/inst/doc/matchprobes.Rnw:267: corresponing ==> corresponding
data/r-bioc-biostrings-2.58.0/inst/extdata/s_1_sequence.txt:448: EYT ==> YET
data/r-bioc-biostrings-2.58.0/inst/unitTests/test_XStringSet.R:8: adresses ==> addresses
data/r-bioc-biostrings-2.58.0/inst/unitTests/test_XStringSetList.R:36: ans ==> and
data/r-bioc-biostrings-2.58.0/inst/unitTests/test_XStringSetList.R:38: ans ==> and
data/r-bioc-biostrings-2.58.0/inst/unitTests/test_XStringSetList.R:38: ans ==> and
data/r-bioc-biostrings-2.58.0/inst/unitTests/test_XStringSetList.R:40: ans ==> and
data/r-bioc-biostrings-2.58.0/inst/unitTests/test_XStringSetList.R:40: ans ==> and
data/r-bioc-biostrings-2.58.0/inst/unitTests/test_XStringSetList.R:42: ans ==> and
data/r-bioc-biostrings-2.58.0/inst/unitTests/test_XStringSetList.R:42: ans ==> and
data/r-bioc-biostrings-2.58.0/inst/unitTests/test_XStringSetList.R:44: ans ==> and
data/r-bioc-biostrings-2.58.0/inst/unitTests/test_XStringSetList.R:44: ans ==> and
data/r-bioc-biostrings-2.58.0/inst/unitTests/test_XStringSetList.R:45: ans ==> and
data/r-bioc-biostrings-2.58.0/inst/unitTests/test_XStringSetList.R:47: ans ==> and
data/r-bioc-biostrings-2.58.0/inst/unitTests/test_XStringSetList.R:64: ans ==> and
data/r-bioc-biostrings-2.58.0/inst/unitTests/test_XStringSetList.R:66: ans ==> and
data/r-bioc-biostrings-2.58.0/inst/unitTests/test_XStringSetList.R:66: ans ==> and
data/r-bioc-biostrings-2.58.0/inst/unitTests/test_XStringSetList.R:68: ans ==> and
data/r-bioc-biostrings-2.58.0/inst/unitTests/test_XStringSetList.R:68: ans ==> and
data/r-bioc-biostrings-2.58.0/inst/unitTests/test_XStringSetList.R:69: ans ==> and
data/r-bioc-biostrings-2.58.0/inst/unitTests/test_XStringSetList.R:71: ans ==> and
data/r-bioc-biostrings-2.58.0/inst/unitTests/test_matchPDict.R:26: interupted ==> interrupted
data/r-bioc-biostrings-2.58.0/man/GENETIC_CODE.Rd:127: tranlated ==> translated
data/r-bioc-biostrings-2.58.0/man/IUPAC_CODE_MAP.Rd:36: enumarates ==> enumerates
data/r-bioc-biostrings-2.58.0/man/MultipleAlignment-class.Rd:106: funtions ==> functions
data/r-bioc-biostrings-2.58.0/man/MultipleAlignment-class.Rd:418: alignement ==> alignment
data/r-bioc-biostrings-2.58.0/man/PDict-class.Rd:204: implicitely ==> implicitly
data/r-bioc-biostrings-2.58.0/man/injectHardMask.Rd:79: orignal ==> original
data/r-bioc-biostrings-2.58.0/man/replaceAt.Rd:250: occurences ==> occurrences
data/r-bioc-biostrings-2.58.0/man/replaceLetterAt.Rd:111: orignal ==> original
data/r-bioc-biostrings-2.58.0/man/translate.Rd:71: occurence ==> occurrence
data/r-bioc-biostrings-2.58.0/man/translate.Rd:78: occurence ==> occurrence
data/r-bioc-biostrings-2.58.0/man/translate.Rd:88: occurence ==> occurrence
data/r-bioc-biostrings-2.58.0/man/translate.Rd:96: occurence ==> occurrence
data/r-bioc-biostrings-2.58.0/man/translate.Rd:207: fron ==> from
data/r-bioc-biostrings-2.58.0/src/BAB_class.c:11: ans ==> and
data/r-bioc-biostrings-2.58.0/src/BAB_class.c:18: ans ==> and
data/r-bioc-biostrings-2.58.0/src/BAB_class.c:19: ans ==> and
data/r-bioc-biostrings-2.58.0/src/BAB_class.c:21: ans ==> and
data/r-bioc-biostrings-2.58.0/src/MIndex_class.c:136: ans ==> and
data/r-bioc-biostrings-2.58.0/src/MIndex_class.c:139: ans ==> and
data/r-bioc-biostrings-2.58.0/src/MIndex_class.c:140: ans ==> and
data/r-bioc-biostrings-2.58.0/src/MIndex_class.c:144: ans ==> and
data/r-bioc-biostrings-2.58.0/src/MIndex_class.c:145: ans ==> and
data/r-bioc-biostrings-2.58.0/src/MIndex_class.c:151: ans ==> and
data/r-bioc-biostrings-2.58.0/src/MIndex_class.c:157: ans ==> and
data/r-bioc-biostrings-2.58.0/src/MIndex_class.c:182: ans ==> and
data/r-bioc-biostrings-2.58.0/src/MIndex_class.c:190: ans ==> and
data/r-bioc-biostrings-2.58.0/src/MIndex_class.c:197: ans ==> and
data/r-bioc-biostrings-2.58.0/src/MIndex_class.c:200: ans ==> and
data/r-bioc-biostrings-2.58.0/src/MIndex_class.c:207: ans ==> and
data/r-bioc-biostrings-2.58.0/src/MIndex_class.c:216: ans ==> and
data/r-bioc-biostrings-2.58.0/src/MIndex_class.c:220: ans ==> and
data/r-bioc-biostrings-2.58.0/src/MIndex_class.c:224: ans ==> and
data/r-bioc-biostrings-2.58.0/src/MIndex_class.c:233: ans ==> and
data/r-bioc-biostrings-2.58.0/src/MIndex_class.c:244: ans ==> and
data/r-bioc-biostrings-2.58.0/src/MIndex_class.c:258: ans ==> and
data/r-bioc-biostrings-2.58.0/src/MIndex_class.c:262: ans ==> and
data/r-bioc-biostrings-2.58.0/src/SparseList_utils.c:28: ans ==> and
data/r-bioc-biostrings-2.58.0/src/SparseList_utils.c:33: ans ==> and
data/r-bioc-biostrings-2.58.0/src/SparseList_utils.c:34: ans ==> and
data/r-bioc-biostrings-2.58.0/src/SparseList_utils.c:40: ans ==> and
data/r-bioc-biostrings-2.58.0/src/SparseList_utils.c:41: ans ==> and
data/r-bioc-biostrings-2.58.0/src/SparseList_utils.c:41: ans ==> and
data/r-bioc-biostrings-2.58.0/src/SparseList_utils.c:42: ans ==> and
data/r-bioc-biostrings-2.58.0/src/SparseList_utils.c:42: ans ==> and
data/r-bioc-biostrings-2.58.0/src/SparseList_utils.c:43: ans ==> and
data/r-bioc-biostrings-2.58.0/src/SparseList_utils.c:44: ans ==> and
data/r-bioc-biostrings-2.58.0/src/SparseList_utils.c:49: ans ==> and
data/r-bioc-biostrings-2.58.0/src/SparseList_utils.c:52: ans ==> and
data/r-bioc-biostrings-2.58.0/src/SparseList_utils.c:54: ans ==> and
data/r-bioc-biostrings-2.58.0/src/XStringSet_class.c:100: ans ==> and
data/r-bioc-biostrings-2.58.0/src/XStringSet_class.c:106: ans ==> and
data/r-bioc-biostrings-2.58.0/src/XStringSet_class.c:109: ans ==> and
data/r-bioc-biostrings-2.58.0/src/XStringSet_class.c:128: ans ==> and
data/r-bioc-biostrings-2.58.0/src/XStringSet_class.c:136: ans ==> and
data/r-bioc-biostrings-2.58.0/src/XStringSet_class.c:141: ans ==> and
data/r-bioc-biostrings-2.58.0/src/XStringSet_class.c:146: ans ==> and
data/r-bioc-biostrings-2.58.0/src/XStringSet_class.c:150: ans ==> and
data/r-bioc-biostrings-2.58.0/src/XStringSet_class.c:184: ans ==> and
data/r-bioc-biostrings-2.58.0/src/XStringSet_class.c:218: ans ==> and
data/r-bioc-biostrings-2.58.0/src/XStringSet_class.c:220: ans ==> and
data/r-bioc-biostrings-2.58.0/src/XString_class.c:163: ans ==> and
data/r-bioc-biostrings-2.58.0/src/XString_class.c:173: ans ==> and
data/r-bioc-biostrings-2.58.0/src/XString_class.c:175: ans ==> and
data/r-bioc-biostrings-2.58.0/src/XString_class.c:186: ans ==> and
data/r-bioc-biostrings-2.58.0/src/align_needwunsQS.c:124: ans ==> and
data/r-bioc-biostrings-2.58.0/src/align_needwunsQS.c:133: ans ==> and
data/r-bioc-biostrings-2.58.0/src/align_needwunsQS.c:139: ans ==> and
data/r-bioc-biostrings-2.58.0/src/align_needwunsQS.c:145: ans ==> and
data/r-bioc-biostrings-2.58.0/src/align_needwunsQS.c:151: ans ==> and
data/r-bioc-biostrings-2.58.0/src/align_needwunsQS.c:156: ans ==> and
data/r-bioc-biostrings-2.58.0/src/align_needwunsQS.c:158: ans ==> and
data/r-bioc-biostrings-2.58.0/src/align_needwunsQS.c:160: ans ==> and
data/r-bioc-biostrings-2.58.0/src/align_utils.c:32: ans ==> and
data/r-bioc-biostrings-2.58.0/src/align_utils.c:35: ans ==> and
data/r-bioc-biostrings-2.58.0/src/align_utils.c:38: ans ==> and
data/r-bioc-biostrings-2.58.0/src/align_utils.c:45: ans ==> and
data/r-bioc-biostrings-2.58.0/src/inject_code.c:16: ans ==> and
data/r-bioc-biostrings-2.58.0/src/inject_code.c:38: ans ==> and
data/r-bioc-biostrings-2.58.0/src/inject_code.c:40: ans ==> and
data/r-bioc-biostrings-2.58.0/src/letter_frequency.c:9: ans ==> and
data/r-bioc-biostrings-2.58.0/src/letter_frequency.c:13: ans ==> and
data/r-bioc-biostrings-2.58.0/src/letter_frequency.c:15: ans ==> and
data/r-bioc-biostrings-2.58.0/src/letter_frequency.c:17: ans ==> and
data/r-bioc-biostrings-2.58.0/src/letter_frequency.c:19: ans ==> and
data/r-bioc-biostrings-2.58.0/src/letter_frequency.c:22: ans ==> and
data/r-bioc-biostrings-2.58.0/src/letter_frequency.c:27: ans ==> and
data/r-bioc-biostrings-2.58.0/src/letter_frequency.c:32: ans ==> and
data/r-bioc-biostrings-2.58.0/src/letter_frequency.c:34: ans ==> and
data/r-bioc-biostrings-2.58.0/src/letter_frequency.c:36: ans ==> and
data/r-bioc-biostrings-2.58.0/src/letter_frequency.c:38: ans ==> and
data/r-bioc-biostrings-2.58.0/src/letter_frequency.c:41: ans ==> and
data/r-bioc-biostrings-2.58.0/src/letter_frequency.c:370: ans ==> and
data/r-bioc-biostrings-2.58.0/src/letter_frequency.c:388: ans ==> and
data/r-bioc-biostrings-2.58.0/src/letter_frequency.c:391: ans ==> and
data/r-bioc-biostrings-2.58.0/src/letter_frequency.c:408: ans ==> and
data/r-bioc-biostrings-2.58.0/src/letter_frequency.c:411: ans ==> and
data/r-bioc-biostrings-2.58.0/src/letter_frequency.c:456: ans ==> and
data/r-bioc-biostrings-2.58.0/src/letter_frequency.c:461: ans ==> and
data/r-bioc-biostrings-2.58.0/src/letter_frequency.c:462: ans ==> and
data/r-bioc-biostrings-2.58.0/src/letter_frequency.c:462: ans ==> and
data/r-bioc-biostrings-2.58.0/src/letter_frequency.c:464: ans ==> and
data/r-bioc-biostrings-2.58.0/src/letter_frequency.c:465: ans ==> and
data/r-bioc-biostrings-2.58.0/src/letter_frequency.c:467: ans ==> and
data/r-bioc-biostrings-2.58.0/src/letter_frequency.c:473: ans ==> and
data/r-bioc-biostrings-2.58.0/src/letter_frequency.c:482: ans ==> and
data/r-bioc-biostrings-2.58.0/src/letter_frequency.c:483: ans ==> and
data/r-bioc-biostrings-2.58.0/src/letter_frequency.c:484: ans ==> and
data/r-bioc-biostrings-2.58.0/src/letter_frequency.c:490: ans ==> and
data/r-bioc-biostrings-2.58.0/src/letter_frequency.c:491: ans ==> and
data/r-bioc-biostrings-2.58.0/src/letter_frequency.c:492: ans ==> and
data/r-bioc-biostrings-2.58.0/src/letter_frequency.c:498: ans ==> and
data/r-bioc-biostrings-2.58.0/src/letter_frequency.c:500: ans ==> and
data/r-bioc-biostrings-2.58.0/src/letter_frequency.c:519: ans ==> and
data/r-bioc-biostrings-2.58.0/src/letter_frequency.c:546: ans ==> and
data/r-bioc-biostrings-2.58.0/src/letter_frequency.c:547: ans ==> and
data/r-bioc-biostrings-2.58.0/src/letter_frequency.c:557: ans ==> and
data/r-bioc-biostrings-2.58.0/src/letter_frequency.c:560: ans ==> and
data/r-bioc-biostrings-2.58.0/src/letter_frequency.c:577: ans ==> and
data/r-bioc-biostrings-2.58.0/src/letter_frequency.c:600: ans ==> and
data/r-bioc-biostrings-2.58.0/src/letter_frequency.c:601: ans ==> and
data/r-bioc-biostrings-2.58.0/src/letter_frequency.c:602: ans ==> and
data/r-bioc-biostrings-2.58.0/src/letter_frequency.c:609: ans ==> and
data/r-bioc-biostrings-2.58.0/src/letter_frequency.c:610: ans ==> and
data/r-bioc-biostrings-2.58.0/src/letter_frequency.c:611: ans ==> and
data/r-bioc-biostrings-2.58.0/src/letter_frequency.c:621: ans ==> and
data/r-bioc-biostrings-2.58.0/src/letter_frequency.c:626: ans ==> and
data/r-bioc-biostrings-2.58.0/src/letter_frequency.c:631: ans ==> and
data/r-bioc-biostrings-2.58.0/src/letter_frequency.c:639: ans ==> and
data/r-bioc-biostrings-2.58.0/src/letter_frequency.c:656: ans ==> and
data/r-bioc-biostrings-2.58.0/src/letter_frequency.c:658: ans ==> and
data/r-bioc-biostrings-2.58.0/src/letter_frequency.c:660: ans ==> and
data/r-bioc-biostrings-2.58.0/src/letter_frequency.c:661: ans ==> and
data/r-bioc-biostrings-2.58.0/src/letter_frequency.c:664: ans ==> and
data/r-bioc-biostrings-2.58.0/src/letter_frequency.c:672: ans ==> and
data/r-bioc-biostrings-2.58.0/src/letter_frequency.c:695: ans ==> and
data/r-bioc-biostrings-2.58.0/src/letter_frequency.c:699: ans ==> and
data/r-bioc-biostrings-2.58.0/src/letter_frequency.c:703: ans ==> and
data/r-bioc-biostrings-2.58.0/src/letter_frequency.c:704: ans ==> and
data/r-bioc-biostrings-2.58.0/src/letter_frequency.c:707: ans ==> and
data/r-bioc-biostrings-2.58.0/src/letter_frequency.c:710: ans ==> and
data/r-bioc-biostrings-2.58.0/src/letter_frequency.c:713: ans ==> and
data/r-bioc-biostrings-2.58.0/src/letter_frequency.c:717: ans ==> and
data/r-bioc-biostrings-2.58.0/src/letter_frequency.c:718: ans ==> and
data/r-bioc-biostrings-2.58.0/src/letter_frequency.c:721: ans ==> and
data/r-bioc-biostrings-2.58.0/src/letter_frequency.c:723: ans ==> and
data/r-bioc-biostrings-2.58.0/src/letter_frequency.c:733: ans ==> and
data/r-bioc-biostrings-2.58.0/src/letter_frequency.c:737: ans ==> and
data/r-bioc-biostrings-2.58.0/src/letter_frequency.c:745: ans ==> and
data/r-bioc-biostrings-2.58.0/src/letter_frequency.c:760: ans ==> and
data/r-bioc-biostrings-2.58.0/src/letter_frequency.c:777: ans ==> and
data/r-bioc-biostrings-2.58.0/src/letter_frequency.c:779: ans ==> and
data/r-bioc-biostrings-2.58.0/src/letter_frequency.c:782: ans ==> and
data/r-bioc-biostrings-2.58.0/src/letter_frequency.c:783: ans ==> and
data/r-bioc-biostrings-2.58.0/src/letter_frequency.c:786: ans ==> and
data/r-bioc-biostrings-2.58.0/src/letter_frequency.c:792: ans ==> and
data/r-bioc-biostrings-2.58.0/src/letter_frequency.c:823: ans ==> and
data/r-bioc-biostrings-2.58.0/src/letter_frequency.c:824: ans ==> and
data/r-bioc-biostrings-2.58.0/src/letter_frequency.c:832: ans ==> and
data/r-bioc-biostrings-2.58.0/src/letter_frequency.c:835: ans ==> and
data/r-bioc-biostrings-2.58.0/src/letter_frequency.c:837: ans ==> and
data/r-bioc-biostrings-2.58.0/src/letter_frequency.c:931: ans ==> and
data/r-bioc-biostrings-2.58.0/src/letter_frequency.c:939: ans ==> and
data/r-bioc-biostrings-2.58.0/src/letter_frequency.c:940: ans ==> and
data/r-bioc-biostrings-2.58.0/src/letter_frequency.c:940: ans ==> and
data/r-bioc-biostrings-2.58.0/src/letter_frequency.c:943: ans ==> and
data/r-bioc-biostrings-2.58.0/src/letter_frequency.c:944: ans ==> and
data/r-bioc-biostrings-2.58.0/src/letter_frequency.c:946: ans ==> and
data/r-bioc-biostrings-2.58.0/src/letter_frequency.c:956: ans ==> and
data/r-bioc-biostrings-2.58.0/src/letter_frequency.c:975: ans ==> and
data/r-bioc-biostrings-2.58.0/src/letter_frequency.c:977: ans ==> and
data/r-bioc-biostrings-2.58.0/src/letter_frequency.c:980: ans ==> and
data/r-bioc-biostrings-2.58.0/src/letter_frequency.c:981: ans ==> and
data/r-bioc-biostrings-2.58.0/src/letter_frequency.c:990: ans ==> and
data/r-bioc-biostrings-2.58.0/src/letter_frequency.c:993: ans ==> and
data/r-bioc-biostrings-2.58.0/src/letter_frequency.c:1039: ans ==> and
data/r-bioc-biostrings-2.58.0/src/letter_frequency.c:1059: ans ==> and
data/r-bioc-biostrings-2.58.0/src/letter_frequency.c:1061: ans ==> and
data/r-bioc-biostrings-2.58.0/src/letter_frequency.c:1062: ans ==> and
data/r-bioc-biostrings-2.58.0/src/letter_frequency.c:1074: ans ==> and
data/r-bioc-biostrings-2.58.0/src/letter_frequency.c:1076: ans ==> and
data/r-bioc-biostrings-2.58.0/src/letter_frequency.c:1079: ans ==> and
data/r-bioc-biostrings-2.58.0/src/lowlevel_matching.c:130: alignement ==> alignment
data/r-bioc-biostrings-2.58.0/src/lowlevel_matching.c:443: ans ==> and
data/r-bioc-biostrings-2.58.0/src/lowlevel_matching.c:444: ans ==> and
data/r-bioc-biostrings-2.58.0/src/lowlevel_matching.c:445: ans ==> and
data/r-bioc-biostrings-2.58.0/src/lowlevel_matching.c:447: ans ==> and
data/r-bioc-biostrings-2.58.0/src/lowlevel_matching.c:465: ans ==> and
data/r-bioc-biostrings-2.58.0/src/lowlevel_matching.c:479: ans ==> and
data/r-bioc-biostrings-2.58.0/src/lowlevel_matching.c:480: ans ==> and
data/r-bioc-biostrings-2.58.0/src/lowlevel_matching.c:483: ans ==> and
data/r-bioc-biostrings-2.58.0/src/lowlevel_matching.c:484: ans ==> and
data/r-bioc-biostrings-2.58.0/src/lowlevel_matching.c:487: ans ==> and
data/r-bioc-biostrings-2.58.0/src/lowlevel_matching.c:488: ans ==> and
data/r-bioc-biostrings-2.58.0/src/lowlevel_matching.c:497: ans ==> and
data/r-bioc-biostrings-2.58.0/src/lowlevel_matching.c:515: ans ==> and
data/r-bioc-biostrings-2.58.0/src/lowlevel_matching.c:530: ans ==> and
data/r-bioc-biostrings-2.58.0/src/lowlevel_matching.c:531: ans ==> and
data/r-bioc-biostrings-2.58.0/src/lowlevel_matching.c:535: ans ==> and
data/r-bioc-biostrings-2.58.0/src/lowlevel_matching.c:536: ans ==> and
data/r-bioc-biostrings-2.58.0/src/lowlevel_matching.c:540: ans ==> and
data/r-bioc-biostrings-2.58.0/src/lowlevel_matching.c:541: ans ==> and
data/r-bioc-biostrings-2.58.0/src/lowlevel_matching.c:554: ans ==> and
data/r-bioc-biostrings-2.58.0/src/lowlevel_matching.c:567: ans ==> and
data/r-bioc-biostrings-2.58.0/src/lowlevel_matching.c:585: ans ==> and
data/r-bioc-biostrings-2.58.0/src/lowlevel_matching.c:586: ans ==> and
data/r-bioc-biostrings-2.58.0/src/lowlevel_matching.c:597: ans ==> and
data/r-bioc-biostrings-2.58.0/src/match_PWM.c:76: ans ==> and
data/r-bioc-biostrings-2.58.0/src/match_PWM.c:86: ans ==> and
data/r-bioc-biostrings-2.58.0/src/match_PWM.c:87: ans ==> and
data/r-bioc-biostrings-2.58.0/src/match_PWM.c:99: ans ==> and
data/r-bioc-biostrings-2.58.0/src/match_pattern_boyermoore.c:30: implemenation ==> implementation
data/r-bioc-biostrings-2.58.0/src/match_pattern_boyermoore.c:233: alignement ==> alignment
data/r-bioc-biostrings-2.58.0/src/match_pattern_boyermoore.c:354: inefficent ==> inefficient
data/r-bioc-biostrings-2.58.0/src/match_pattern_shiftor.c:4: BITAP ==> BITMAP
data/r-bioc-biostrings-2.58.0/src/match_pattern_shiftor.c:60: occuring ==> occurring
data/r-bioc-biostrings-2.58.0/src/match_pattern_shiftor.c:64: occured ==> occurred
data/r-bioc-biostrings-2.58.0/src/match_pattern_shiftor.c:91: ans ==> and
data/r-bioc-biostrings-2.58.0/src/match_pattern_shiftor.c:93: ans ==> and
data/r-bioc-biostrings-2.58.0/src/match_pattern_shiftor.c:94: ans ==> and
data/r-bioc-biostrings-2.58.0/src/match_pattern_shiftor.c:96: ans ==> and
data/r-bioc-biostrings-2.58.0/src/match_pdict.c:89: ans ==> and
data/r-bioc-biostrings-2.58.0/src/match_pdict.c:97: ans ==> and
data/r-bioc-biostrings-2.58.0/src/match_pdict.c:98: ans ==> and
data/r-bioc-biostrings-2.58.0/src/match_pdict.c:100: ans ==> and
data/r-bioc-biostrings-2.58.0/src/match_pdict.c:102: ans ==> and
data/r-bioc-biostrings-2.58.0/src/match_pdict.c:105: ans ==> and
data/r-bioc-biostrings-2.58.0/src/match_pdict.c:108: ans ==> and
data/r-bioc-biostrings-2.58.0/src/match_pdict.c:123: ans ==> and
data/r-bioc-biostrings-2.58.0/src/match_pdict.c:125: ans ==> and
data/r-bioc-biostrings-2.58.0/src/match_pdict.c:327: ans ==> and
data/r-bioc-biostrings-2.58.0/src/match_pdict.c:332: ans ==> and
data/r-bioc-biostrings-2.58.0/src/match_pdict.c:340: ans ==> and
data/r-bioc-biostrings-2.58.0/src/match_pdict.c:345: ans ==> and
data/r-bioc-biostrings-2.58.0/src/match_pdict.c:394: ans ==> and
data/r-bioc-biostrings-2.58.0/src/match_pdict.c:403: ans ==> and
data/r-bioc-biostrings-2.58.0/src/match_pdict.c:404: ans ==> and
data/r-bioc-biostrings-2.58.0/src/match_pdict.c:406: ans ==> and
data/r-bioc-biostrings-2.58.0/src/match_pdict.c:423: ans ==> and
data/r-bioc-biostrings-2.58.0/src/match_pdict.c:431: ans ==> and
data/r-bioc-biostrings-2.58.0/src/match_pdict.c:443: ans ==> and
data/r-bioc-biostrings-2.58.0/src/match_pdict.c:453: ans ==> and
data/r-bioc-biostrings-2.58.0/src/match_pdict.c:455: ans ==> and
data/r-bioc-biostrings-2.58.0/src/match_pdict.c:461: ans ==> and
data/r-bioc-biostrings-2.58.0/src/match_pdict.c:472: ans ==> and
data/r-bioc-biostrings-2.58.0/src/match_pdict.c:480: ans ==> and
data/r-bioc-biostrings-2.58.0/src/match_pdict_ACtree2.c:799: ans ==> and
data/r-bioc-biostrings-2.58.0/src/match_pdict_ACtree2.c:827: ans ==> and
data/r-bioc-biostrings-2.58.0/src/match_pdict_ACtree2.c:833: ans ==> and
data/r-bioc-biostrings-2.58.0/src/match_pdict_ACtree2.c:837: ans ==> and
data/r-bioc-biostrings-2.58.0/src/match_pdict_ACtree2.c:841: ans ==> and
data/r-bioc-biostrings-2.58.0/src/match_pdict_ACtree2.c:845: ans ==> and
data/r-bioc-biostrings-2.58.0/src/match_pdict_Twobit.c:63: ans ==> and
data/r-bioc-biostrings-2.58.0/src/match_pdict_Twobit.c:65: ans ==> and
data/r-bioc-biostrings-2.58.0/src/match_pdict_Twobit.c:71: ans ==> and
data/r-bioc-biostrings-2.58.0/src/match_pdict_Twobit.c:76: ans ==> and
data/r-bioc-biostrings-2.58.0/src/match_pdict_Twobit.c:81: ans ==> and
data/r-bioc-biostrings-2.58.0/src/match_pdict_Twobit.c:85: ans ==> and
data/r-bioc-biostrings-2.58.0/src/match_pdict_Twobit.c:110: ans ==> and
data/r-bioc-biostrings-2.58.0/src/match_pdict_Twobit.c:145: ans ==> and
data/r-bioc-biostrings-2.58.0/src/match_pdict_Twobit.c:147: ans ==> and
data/r-bioc-biostrings-2.58.0/src/match_reporting.c:152: ans ==> and
data/r-bioc-biostrings-2.58.0/src/match_reporting.c:155: ans ==> and
data/r-bioc-biostrings-2.58.0/src/match_reporting.c:156: ans ==> and
data/r-bioc-biostrings-2.58.0/src/match_reporting.c:156: ans ==> and
data/r-bioc-biostrings-2.58.0/src/match_reporting.c:157: ans ==> and
data/r-bioc-biostrings-2.58.0/src/match_reporting.c:158: ans ==> and
data/r-bioc-biostrings-2.58.0/src/match_reporting.c:160: ans ==> and
data/r-bioc-biostrings-2.58.0/src/match_reporting.c:220: ans ==> and
data/r-bioc-biostrings-2.58.0/src/match_reporting.c:222: ans ==> and
data/r-bioc-biostrings-2.58.0/src/match_reporting.c:224: ans ==> and
data/r-bioc-biostrings-2.58.0/src/match_reporting.c:227: ans ==> and
data/r-bioc-biostrings-2.58.0/src/match_reporting.c:229: ans ==> and
data/r-bioc-biostrings-2.58.0/src/match_reporting.c:310: ans ==> and
data/r-bioc-biostrings-2.58.0/src/match_reporting.c:323: ans ==> and
data/r-bioc-biostrings-2.58.0/src/match_reporting.c:325: ans ==> and
data/r-bioc-biostrings-2.58.0/src/pmatchPattern.c:45: ans ==> and
data/r-bioc-biostrings-2.58.0/src/pmatchPattern.c:56: ans ==> and
data/r-bioc-biostrings-2.58.0/src/pmatchPattern.c:57: ans ==> and
data/r-bioc-biostrings-2.58.0/src/pmatchPattern.c:59: ans ==> and
data/r-bioc-biostrings-2.58.0/src/pmatchPattern.c:71: ans ==> and
data/r-bioc-biostrings-2.58.0/src/pmatchPattern.c:82: ans ==> and
data/r-bioc-biostrings-2.58.0/src/pmatchPattern.c:83: ans ==> and
data/r-bioc-biostrings-2.58.0/src/pmatchPattern.c:85: ans ==> and
data/r-bioc-biostrings-2.58.0/src/read_fasta_files.c:357: ans ==> and
data/r-bioc-biostrings-2.58.0/src/read_fasta_files.c:389: ans ==> and
data/r-bioc-biostrings-2.58.0/src/read_fasta_files.c:393: ans ==> and
data/r-bioc-biostrings-2.58.0/src/read_fasta_files.c:397: ans ==> and
data/r-bioc-biostrings-2.58.0/src/read_fasta_files.c:413: ans ==> and
data/r-bioc-biostrings-2.58.0/src/read_fasta_files.c:427: ans ==> and
data/r-bioc-biostrings-2.58.0/src/read_fasta_files.c:430: ans ==> and
data/r-bioc-biostrings-2.58.0/src/read_fasta_files.c:445: ans ==> and
data/r-bioc-biostrings-2.58.0/src/read_fasta_files.c:588: ans ==> and
data/r-bioc-biostrings-2.58.0/src/read_fasta_files.c:594: ans ==> and
data/r-bioc-biostrings-2.58.0/src/read_fasta_files.c:596: ans ==> and
data/r-bioc-biostrings-2.58.0/src/read_fasta_files.c:614: ans ==> and
data/r-bioc-biostrings-2.58.0/src/read_fastq_files.c:513: ans ==> and
data/r-bioc-biostrings-2.58.0/src/read_fastq_files.c:566: ans ==> and
data/r-bioc-biostrings-2.58.0/src/read_fastq_files.c:567: ans ==> and
data/r-bioc-biostrings-2.58.0/src/read_fastq_files.c:568: ans ==> and
data/r-bioc-biostrings-2.58.0/src/read_fastq_files.c:570: ans ==> and
data/r-bioc-biostrings-2.58.0/src/replaceAt.c:135: ans ==> and
data/r-bioc-biostrings-2.58.0/src/replaceAt.c:163: ans ==> and
data/r-bioc-biostrings-2.58.0/src/replaceAt.c:173: ans ==> and
data/r-bioc-biostrings-2.58.0/src/replaceAt.c:183: ans ==> and
data/r-bioc-biostrings-2.58.0/src/replaceAt.c:205: ans ==> and
data/r-bioc-biostrings-2.58.0/src/replaceAt.c:269: ans ==> and
data/r-bioc-biostrings-2.58.0/src/replaceAt.c:280: ans ==> and
data/r-bioc-biostrings-2.58.0/src/replaceAt.c:304: ans ==> and
data/r-bioc-biostrings-2.58.0/src/replace_letter_at.c:97: ans ==> and
data/r-bioc-biostrings-2.58.0/src/replace_letter_at.c:140: ans ==> and
data/r-bioc-biostrings-2.58.0/src/replace_letter_at.c:142: ans ==> and
data/r-bioc-biostrings-2.58.0/src/translate.c:142: ans ==> and
data/r-bioc-biostrings-2.58.0/src/translate.c:186: ans ==> and
data/r-bioc-biostrings-2.58.0/src/translate.c:187: ans ==> and
data/r-bioc-biostrings-2.58.0/src/translate.c:188: ans ==> and
data/r-bioc-biostrings-2.58.0/src/translate.c:222: ans ==> and
data/r-bioc-biostrings-2.58.0/src/unstrsplit_methods.c:58: ans ==> and
data/r-bioc-biostrings-2.58.0/src/unstrsplit_methods.c:81: ans ==> and
data/r-bioc-biostrings-2.58.0/src/unstrsplit_methods.c:84: ans ==> and
data/r-bioc-biostrings-2.58.0/src/unstrsplit_methods.c:95: ans ==> and
data/r-bioc-biostrings-2.58.0/src/unstrsplit_methods.c:97: ans ==> and
data/r-bioc-biostrings-2.58.0/src/utils.c:20: ans ==> and
data/r-bioc-biostrings-2.58.0/src/utils.c:25: ans ==> and
data/r-bioc-biostrings-2.58.0/src/utils.c:27: ans ==> and
data/r-bioc-biostrings-2.58.0/src/utils.c:29: ans ==> and
data/r-bioc-biostrings-2.58.0/src/xscat.c:19: ans ==> and
data/r-bioc-biostrings-2.58.0/src/xscat.c:52: ans ==> and
data/r-bioc-biostrings-2.58.0/src/xscat.c:54: ans ==> and
data/r-bioc-biostrings-2.58.0/src/xscat.c:67: ans ==> and
data/r-bioc-biostrings-2.58.0/src/xscat.c:108: ans ==> and
data/r-bioc-biostrings-2.58.0/src/xscat.c:111: ans ==> and
data/r-bioc-biostrings-2.58.0/src/xscat.c:134: ans ==> and
data/r-bioc-biostrings-2.58.0/vignettes/Biostrings2Classes.Rnw:80: instanciated ==> instantiated
data/r-bioc-biostrings-2.58.0/vignettes/MultipleAlignments.Rnw:179: occurances ==> occurrences
data/r-bioc-biostrings-2.58.0/vignettes/MultipleAlignments.Rnw:187: collumns ==> columns
data/r-bioc-biostrings-2.58.0/vignettes/PairwiseAlignments.Rnw:189: tranlates ==> translates
data/r-bioc-biostrings-2.58.0/vignettes/matchprobes.Rnw:93: explicitely ==> explicitly
data/r-bioc-biostrings-2.58.0/vignettes/matchprobes.Rnw:185: explicitely ==> explicitly
data/r-bioc-biostrings-2.58.0/vignettes/matchprobes.Rnw:267: corresponing ==> corresponding
data/r-bioc-biostrings-2.58.0/debian/copyright:107: MERCHANTIBILITY ==> MERCHANTABILITY