data/r-bioc-genomicalignments-1.26.0/R/GAlignmentPairs-class.R:88: ans ==> and
data/r-bioc-genomicalignments-1.26.0/R/GAlignmentPairs-class.R:90: ans ==> and
data/r-bioc-genomicalignments-1.26.0/R/GAlignmentPairs-class.R:90: ans ==> and
data/r-bioc-genomicalignments-1.26.0/R/GAlignmentPairs-class.R:91: ans ==> and
data/r-bioc-genomicalignments-1.26.0/R/GAlignmentPairs-class.R:98: ans ==> and
data/r-bioc-genomicalignments-1.26.0/R/GAlignmentPairs-class.R:100: ans ==> and
data/r-bioc-genomicalignments-1.26.0/R/GAlignmentPairs-class.R:100: ans ==> and
data/r-bioc-genomicalignments-1.26.0/R/GAlignmentPairs-class.R:101: ans ==> and
data/r-bioc-genomicalignments-1.26.0/R/GAlignmentPairs-class.R:109: ans ==> and
data/r-bioc-genomicalignments-1.26.0/R/GAlignmentPairs-class.R:112: ans ==> and
data/r-bioc-genomicalignments-1.26.0/R/GAlignmentPairs-class.R:112: ans ==> and
data/r-bioc-genomicalignments-1.26.0/R/GAlignmentPairs-class.R:114: ans ==> and
data/r-bioc-genomicalignments-1.26.0/R/GAlignmentPairs-class.R:115: ans ==> and
data/r-bioc-genomicalignments-1.26.0/R/GAlignmentPairs-class.R:128: ans ==> and
data/r-bioc-genomicalignments-1.26.0/R/GAlignmentPairs-class.R:131: ans ==> and
data/r-bioc-genomicalignments-1.26.0/R/GAlignmentPairs-class.R:131: ans ==> and
data/r-bioc-genomicalignments-1.26.0/R/GAlignmentPairs-class.R:133: ans ==> and
data/r-bioc-genomicalignments-1.26.0/R/GAlignmentPairs-class.R:134: ans ==> and
data/r-bioc-genomicalignments-1.26.0/R/GAlignmentPairs-class.R:141: ans ==> and
data/r-bioc-genomicalignments-1.26.0/R/GAlignmentPairs-class.R:142: ans ==> and
data/r-bioc-genomicalignments-1.26.0/R/GAlignmentPairs-class.R:142: ans ==> and
data/r-bioc-genomicalignments-1.26.0/R/GAlignmentPairs-class.R:143: ans ==> and
data/r-bioc-genomicalignments-1.26.0/R/GAlignmentPairs-class.R:150: ans ==> and
data/r-bioc-genomicalignments-1.26.0/R/GAlignmentPairs-class.R:152: ans ==> and
data/r-bioc-genomicalignments-1.26.0/R/GAlignmentPairs-class.R:152: ans ==> and
data/r-bioc-genomicalignments-1.26.0/R/GAlignmentPairs-class.R:153: ans ==> and
data/r-bioc-genomicalignments-1.26.0/R/GAlignmentPairs-class.R:350: ans ==> and
data/r-bioc-genomicalignments-1.26.0/R/GAlignmentPairs-class.R:352: ans ==> and
data/r-bioc-genomicalignments-1.26.0/R/GAlignmentPairs-class.R:353: ans ==> and
data/r-bioc-genomicalignments-1.26.0/R/GAlignmentPairs-class.R:415: ans ==> and
data/r-bioc-genomicalignments-1.26.0/R/GAlignmentPairs-class.R:418: ans ==> and
data/r-bioc-genomicalignments-1.26.0/R/GAlignmentPairs-class.R:420: ans ==> and
data/r-bioc-genomicalignments-1.26.0/R/GAlignmentPairs-class.R:447: ans ==> and
data/r-bioc-genomicalignments-1.26.0/R/GAlignmentPairs-class.R:449: ans ==> and
data/r-bioc-genomicalignments-1.26.0/R/GAlignmentPairs-class.R:451: ans ==> and
data/r-bioc-genomicalignments-1.26.0/R/GAlignmentPairs-class.R:452: ans ==> and
data/r-bioc-genomicalignments-1.26.0/R/GAlignmentPairs-class.R:512: ans ==> and
data/r-bioc-genomicalignments-1.26.0/R/GAlignmentPairs-class.R:517: ans ==> and
data/r-bioc-genomicalignments-1.26.0/R/GAlignmentPairs-class.R:518: ans ==> and
data/r-bioc-genomicalignments-1.26.0/R/GAlignmentPairs-class.R:537: ans ==> and
data/r-bioc-genomicalignments-1.26.0/R/GAlignmentPairs-class.R:538: ans ==> and
data/r-bioc-genomicalignments-1.26.0/R/GAlignmentPairs-class.R:539: ans ==> and
data/r-bioc-genomicalignments-1.26.0/R/GAlignmentPairs-class.R:575: ans ==> and
data/r-bioc-genomicalignments-1.26.0/R/GAlignmentPairs-class.R:577: ans ==> and
data/r-bioc-genomicalignments-1.26.0/R/GAlignmentPairs-class.R:578: ans ==> and
data/r-bioc-genomicalignments-1.26.0/R/GAlignmentPairs-class.R:581: ans ==> and
data/r-bioc-genomicalignments-1.26.0/R/GAlignmentPairs-class.R:582: ans ==> and
data/r-bioc-genomicalignments-1.26.0/R/GAlignmentPairs-class.R:660: ans ==> and
data/r-bioc-genomicalignments-1.26.0/R/GAlignmentPairs-class.R:668: ans ==> and
data/r-bioc-genomicalignments-1.26.0/R/GAlignmentPairs-class.R:668: ans ==> and
data/r-bioc-genomicalignments-1.26.0/R/GAlignmentPairs-class.R:670: ans ==> and
data/r-bioc-genomicalignments-1.26.0/R/GAlignments-class.R:183: suppoprt ==> support
data/r-bioc-genomicalignments-1.26.0/R/GAlignments-class.R:359: ans ==> and
data/r-bioc-genomicalignments-1.26.0/R/GAlignments-class.R:360: ans ==> and
data/r-bioc-genomicalignments-1.26.0/R/GAlignments-class.R:361: ans ==> and
data/r-bioc-genomicalignments-1.26.0/R/GAlignments-class.R:381: ans ==> and
data/r-bioc-genomicalignments-1.26.0/R/GAlignments-class.R:383: ans ==> and
data/r-bioc-genomicalignments-1.26.0/R/GAlignments-class.R:384: ans ==> and
data/r-bioc-genomicalignments-1.26.0/R/GAlignments-class.R:393: ans ==> and
data/r-bioc-genomicalignments-1.26.0/R/GAlignments-class.R:398: ans ==> and
data/r-bioc-genomicalignments-1.26.0/R/GAlignments-class.R:399: ans ==> and
data/r-bioc-genomicalignments-1.26.0/R/GAlignments-class.R:426: ans ==> and
data/r-bioc-genomicalignments-1.26.0/R/GAlignments-class.R:429: ans ==> and
data/r-bioc-genomicalignments-1.26.0/R/GAlignments-class.R:429: ans ==> and
data/r-bioc-genomicalignments-1.26.0/R/GAlignments-class.R:431: ans ==> and
data/r-bioc-genomicalignments-1.26.0/R/GAlignments-class.R:433: ans ==> and
data/r-bioc-genomicalignments-1.26.0/R/GAlignments-class.R:434: ans ==> and
data/r-bioc-genomicalignments-1.26.0/R/GAlignments-class.R:480: ans ==> and
data/r-bioc-genomicalignments-1.26.0/R/GAlignments-class.R:485: ans ==> and
data/r-bioc-genomicalignments-1.26.0/R/GAlignments-class.R:486: ans ==> and
data/r-bioc-genomicalignments-1.26.0/R/GAlignments-class.R:487: ans ==> and
data/r-bioc-genomicalignments-1.26.0/R/GAlignments-class.R:515: ans ==> and
data/r-bioc-genomicalignments-1.26.0/R/GAlignments-class.R:525: ans ==> and
data/r-bioc-genomicalignments-1.26.0/R/GAlignments-class.R:525: ans ==> and
data/r-bioc-genomicalignments-1.26.0/R/GAlignments-class.R:527: ans ==> and
data/r-bioc-genomicalignments-1.26.0/R/GAlignmentsList-class.R:174: ans ==> and
data/r-bioc-genomicalignments-1.26.0/R/GAlignmentsList-class.R:176: ans ==> and
data/r-bioc-genomicalignments-1.26.0/R/GAlignmentsList-class.R:178: ans ==> and
data/r-bioc-genomicalignments-1.26.0/R/GAlignmentsList-class.R:179: ans ==> and
data/r-bioc-genomicalignments-1.26.0/R/GAlignmentsList-class.R:203: ans ==> and
data/r-bioc-genomicalignments-1.26.0/R/GAlignmentsList-class.R:205: ans ==> and
data/r-bioc-genomicalignments-1.26.0/R/GAlignmentsList-class.R:206: ans ==> and
data/r-bioc-genomicalignments-1.26.0/R/GAlignmentsList-class.R:224: ans ==> and
data/r-bioc-genomicalignments-1.26.0/R/GAlignmentsList-class.R:226: ans ==> and
data/r-bioc-genomicalignments-1.26.0/R/GAlignmentsList-class.R:228: ans ==> and
data/r-bioc-genomicalignments-1.26.0/R/GAlignmentsList-class.R:229: ans ==> and
data/r-bioc-genomicalignments-1.26.0/R/GAlignmentsList-class.R:242: ans ==> and
data/r-bioc-genomicalignments-1.26.0/R/GAlignmentsList-class.R:244: ans ==> and
data/r-bioc-genomicalignments-1.26.0/R/GAlignmentsList-class.R:246: ans ==> and
data/r-bioc-genomicalignments-1.26.0/R/GAlignmentsList-class.R:247: ans ==> and
data/r-bioc-genomicalignments-1.26.0/R/OverlapEncodings-class.R:228: ans ==> and
data/r-bioc-genomicalignments-1.26.0/R/OverlapEncodings-class.R:235: ans ==> and
data/r-bioc-genomicalignments-1.26.0/R/OverlapEncodings-class.R:235: ans ==> and
data/r-bioc-genomicalignments-1.26.0/R/OverlapEncodings-class.R:237: ans ==> and
data/r-bioc-genomicalignments-1.26.0/R/cigar-utils.R:171: ans ==> and
data/r-bioc-genomicalignments-1.26.0/R/cigar-utils.R:172: ans ==> and
data/r-bioc-genomicalignments-1.26.0/R/cigar-utils.R:173: ans ==> and
data/r-bioc-genomicalignments-1.26.0/R/cigar-utils.R:322: ans ==> and
data/r-bioc-genomicalignments-1.26.0/R/cigar-utils.R:323: ans ==> and
data/r-bioc-genomicalignments-1.26.0/R/cigar-utils.R:324: ans ==> and
data/r-bioc-genomicalignments-1.26.0/R/cigar-utils.R:336: ans ==> and
data/r-bioc-genomicalignments-1.26.0/R/cigar-utils.R:337: ans ==> and
data/r-bioc-genomicalignments-1.26.0/R/cigar-utils.R:338: ans ==> and
data/r-bioc-genomicalignments-1.26.0/R/encodeOverlaps-methods.R:281: ans ==> and
data/r-bioc-genomicalignments-1.26.0/R/encodeOverlaps-methods.R:284: ans ==> and
data/r-bioc-genomicalignments-1.26.0/R/encodeOverlaps-methods.R:284: ans ==> and
data/r-bioc-genomicalignments-1.26.0/R/encodeOverlaps-methods.R:285: ans ==> and
data/r-bioc-genomicalignments-1.26.0/R/encodeOverlaps-methods.R:347: ans ==> and
data/r-bioc-genomicalignments-1.26.0/R/encodeOverlaps-methods.R:348: ans ==> and
data/r-bioc-genomicalignments-1.26.0/R/encodeOverlaps-methods.R:349: ans ==> and
data/r-bioc-genomicalignments-1.26.0/R/encodeOverlaps-methods.R:352: ans ==> and
data/r-bioc-genomicalignments-1.26.0/R/encodeOverlaps-methods.R:353: ans ==> and
data/r-bioc-genomicalignments-1.26.0/R/encodeOverlaps-methods.R:354: ans ==> and
data/r-bioc-genomicalignments-1.26.0/R/encodeOverlaps-methods.R:356: ans ==> and
data/r-bioc-genomicalignments-1.26.0/R/encodeOverlaps-methods.R:357: ans ==> and
data/r-bioc-genomicalignments-1.26.0/R/encodeOverlaps-methods.R:358: ans ==> and
data/r-bioc-genomicalignments-1.26.0/R/encodeOverlaps-methods.R:478: ans ==> and
data/r-bioc-genomicalignments-1.26.0/R/encodeOverlaps-methods.R:479: ans ==> and
data/r-bioc-genomicalignments-1.26.0/R/encodeOverlaps-methods.R:482: ans ==> and
data/r-bioc-genomicalignments-1.26.0/R/encodeOverlaps-methods.R:604: ans ==> and
data/r-bioc-genomicalignments-1.26.0/R/encodeOverlaps-methods.R:605: ans ==> and
data/r-bioc-genomicalignments-1.26.0/R/encodeOverlaps-methods.R:606: ans ==> and
data/r-bioc-genomicalignments-1.26.0/R/findMateAlignment.R:118: occurence ==> occurrence
data/r-bioc-genomicalignments-1.26.0/R/findMateAlignment.R:119: occurence ==> occurrence
data/r-bioc-genomicalignments-1.26.0/R/findMateAlignment.R:120: occurence ==> occurrence
data/r-bioc-genomicalignments-1.26.0/R/findMateAlignment.R:130: ans ==> and
data/r-bioc-genomicalignments-1.26.0/R/findMateAlignment.R:131: ans ==> and
data/r-bioc-genomicalignments-1.26.0/R/findMateAlignment.R:132: ans ==> and
data/r-bioc-genomicalignments-1.26.0/R/findMateAlignment.R:207: ans ==> and
data/r-bioc-genomicalignments-1.26.0/R/findMateAlignment.R:210: ans ==> and
data/r-bioc-genomicalignments-1.26.0/R/findMateAlignment.R:213: ans ==> and
data/r-bioc-genomicalignments-1.26.0/R/findMateAlignment.R:215: ans ==> and
data/r-bioc-genomicalignments-1.26.0/R/findMateAlignment.R:215: ans ==> and
data/r-bioc-genomicalignments-1.26.0/R/findMateAlignment.R:221: ans ==> and
data/r-bioc-genomicalignments-1.26.0/R/findSpliceOverlaps-methods.R:78: ans ==> and
data/r-bioc-genomicalignments-1.26.0/R/findSpliceOverlaps-methods.R:83: ans ==> and
data/r-bioc-genomicalignments-1.26.0/R/findSpliceOverlaps-methods.R:92: ans ==> and
data/r-bioc-genomicalignments-1.26.0/R/findSpliceOverlaps-methods.R:93: ans ==> and
data/r-bioc-genomicalignments-1.26.0/R/findSpliceOverlaps-methods.R:95: ans ==> and
data/r-bioc-genomicalignments-1.26.0/R/findSpliceOverlaps-methods.R:139: ans ==> and
data/r-bioc-genomicalignments-1.26.0/R/findSpliceOverlaps-methods.R:141: ans ==> and
data/r-bioc-genomicalignments-1.26.0/R/findSpliceOverlaps-methods.R:147: ans ==> and
data/r-bioc-genomicalignments-1.26.0/R/findSpliceOverlaps-methods.R:149: ans ==> and
data/r-bioc-genomicalignments-1.26.0/R/junctions-methods.R:22: ans ==> and
data/r-bioc-genomicalignments-1.26.0/R/junctions-methods.R:25: ans ==> and
data/r-bioc-genomicalignments-1.26.0/R/junctions-methods.R:26: ans ==> and
data/r-bioc-genomicalignments-1.26.0/R/junctions-methods.R:40: ans ==> and
data/r-bioc-genomicalignments-1.26.0/R/junctions-methods.R:42: ans ==> and
data/r-bioc-genomicalignments-1.26.0/R/junctions-methods.R:44: ans ==> and
data/r-bioc-genomicalignments-1.26.0/R/junctions-methods.R:46: ans ==> and
data/r-bioc-genomicalignments-1.26.0/R/junctions-methods.R:62: ans ==> and
data/r-bioc-genomicalignments-1.26.0/R/junctions-methods.R:64: ans ==> and
data/r-bioc-genomicalignments-1.26.0/R/junctions-methods.R:65: ans ==> and
data/r-bioc-genomicalignments-1.26.0/R/junctions-methods.R:116: ans ==> and
data/r-bioc-genomicalignments-1.26.0/R/junctions-methods.R:118: ans ==> and
data/r-bioc-genomicalignments-1.26.0/R/junctions-methods.R:118: ans ==> and
data/r-bioc-genomicalignments-1.26.0/R/junctions-methods.R:119: ans ==> and
data/r-bioc-genomicalignments-1.26.0/R/junctions-methods.R:119: ans ==> and
data/r-bioc-genomicalignments-1.26.0/R/junctions-methods.R:146: ans ==> and
data/r-bioc-genomicalignments-1.26.0/R/junctions-methods.R:147: ans ==> and
data/r-bioc-genomicalignments-1.26.0/R/junctions-methods.R:171: ans ==> and
data/r-bioc-genomicalignments-1.26.0/R/junctions-methods.R:179: ans ==> and
data/r-bioc-genomicalignments-1.26.0/R/junctions-methods.R:180: ans ==> and
data/r-bioc-genomicalignments-1.26.0/R/junctions-methods.R:215: ans ==> and
data/r-bioc-genomicalignments-1.26.0/R/junctions-methods.R:216: ans ==> and
data/r-bioc-genomicalignments-1.26.0/R/junctions-methods.R:218: ans ==> and
data/r-bioc-genomicalignments-1.26.0/R/junctions-methods.R:253: ans ==> and
data/r-bioc-genomicalignments-1.26.0/R/junctions-methods.R:254: ans ==> and
data/r-bioc-genomicalignments-1.26.0/R/junctions-methods.R:285: ans ==> and
data/r-bioc-genomicalignments-1.26.0/R/junctions-methods.R:286: ans ==> and
data/r-bioc-genomicalignments-1.26.0/R/junctions-methods.R:288: ans ==> and
data/r-bioc-genomicalignments-1.26.0/R/junctions-methods.R:289: ans ==> and
data/r-bioc-genomicalignments-1.26.0/R/readGAlignments.R:14: ans ==> and
data/r-bioc-genomicalignments-1.26.0/R/readGAlignments.R:15: ans ==> and
data/r-bioc-genomicalignments-1.26.0/R/readGAlignments.R:16: ans ==> and
data/r-bioc-genomicalignments-1.26.0/R/readGAlignments.R:18: ans ==> and
data/r-bioc-genomicalignments-1.26.0/R/readGAlignments.R:117: ans ==> and
data/r-bioc-genomicalignments-1.26.0/R/readGAlignments.R:120: ans ==> and
data/r-bioc-genomicalignments-1.26.0/R/readGAlignments.R:379: ans ==> and
data/r-bioc-genomicalignments-1.26.0/R/readGAlignments.R:382: ans ==> and
data/r-bioc-genomicalignments-1.26.0/R/stackStringsFromGAlignments.R:25: ans ==> and
data/r-bioc-genomicalignments-1.26.0/R/stackStringsFromGAlignments.R:29: ans ==> and
data/r-bioc-genomicalignments-1.26.0/R/stackStringsFromGAlignments.R:30: ans ==> and
data/r-bioc-genomicalignments-1.26.0/R/stackStringsFromGAlignments.R:31: ans ==> and
data/r-bioc-genomicalignments-1.26.0/R/stackStringsFromGAlignments.R:98: singe ==> single
data/r-bioc-genomicalignments-1.26.0/R/stackStringsFromGAlignments.R:122: ans ==> and
data/r-bioc-genomicalignments-1.26.0/R/stackStringsFromGAlignments.R:128: ans ==> and
data/r-bioc-genomicalignments-1.26.0/R/stackStringsFromGAlignments.R:135: ans ==> and
data/r-bioc-genomicalignments-1.26.0/R/stackStringsFromGAlignments.R:137: ans ==> and
data/r-bioc-genomicalignments-1.26.0/R/summarizeOverlaps-methods.R:110: ambigous ==> ambiguous
data/r-bioc-genomicalignments-1.26.0/R/summarizeOverlaps-methods.R:123: ambigous ==> ambiguous
data/r-bioc-genomicalignments-1.26.0/R/utils.R:9: ans ==> and
data/r-bioc-genomicalignments-1.26.0/R/utils.R:9: ans ==> and
data/r-bioc-genomicalignments-1.26.0/R/utils.R:9: ans ==> and
data/r-bioc-genomicalignments-1.26.0/R/utils.R:9: ans ==> and
data/r-bioc-genomicalignments-1.26.0/inst/doc/OverlapEncodings.Rnw:130: explicitely ==> explicitly
data/r-bioc-genomicalignments-1.26.0/inst/doc/OverlapEncodings.Rnw:135: occurence ==> occurrence
data/r-bioc-genomicalignments-1.26.0/inst/doc/OverlapEncodings.Rnw:224: occurence ==> occurrence
data/r-bioc-genomicalignments-1.26.0/inst/doc/OverlapEncodings.Rnw:614: occurences ==> occurrences
data/r-bioc-genomicalignments-1.26.0/inst/doc/OverlapEncodings.Rnw:615: occurences ==> occurrences
data/r-bioc-genomicalignments-1.26.0/inst/doc/OverlapEncodings.Rnw:616: occurences ==> occurrences
data/r-bioc-genomicalignments-1.26.0/inst/doc/OverlapEncodings.Rnw:766: occurences ==> occurrences
data/r-bioc-genomicalignments-1.26.0/inst/doc/OverlapEncodings.Rnw:767: occurences ==> occurrences
data/r-bioc-genomicalignments-1.26.0/inst/doc/OverlapEncodings.Rnw:768: occurences ==> occurrences
data/r-bioc-genomicalignments-1.26.0/inst/doc/OverlapEncodings.Rnw:769: occurences ==> occurrences
data/r-bioc-genomicalignments-1.26.0/inst/doc/OverlapEncodings.Rnw:771: occurences ==> occurrences
data/r-bioc-genomicalignments-1.26.0/inst/doc/OverlapEncodings.Rnw:1357: occurences ==> occurrences
data/r-bioc-genomicalignments-1.26.0/inst/doc/OverlapEncodings.Rnw:1358: occurences ==> occurrences
data/r-bioc-genomicalignments-1.26.0/inst/doc/OverlapEncodings.Rnw:1359: occurences ==> occurrences
data/r-bioc-genomicalignments-1.26.0/inst/doc/OverlapEncodings.Rnw:1444: occurences ==> occurrences
data/r-bioc-genomicalignments-1.26.0/inst/doc/OverlapEncodings.Rnw:1445: occurences ==> occurrences
data/r-bioc-genomicalignments-1.26.0/inst/doc/OverlapEncodings.Rnw:1448: occurences ==> occurrences
data/r-bioc-genomicalignments-1.26.0/inst/doc/OverlapEncodings.Rnw:1603: aligments ==> alignments
data/r-bioc-genomicalignments-1.26.0/inst/doc/WorkingWithAlignedNucleotides.Rnw:336: occurence ==> occurrence
data/r-bioc-genomicalignments-1.26.0/inst/doc/summarizeOverlaps.Rnw:132: becasue ==> because
data/r-bioc-genomicalignments-1.26.0/inst/doc/summarizeOverlaps.Rnw:222: excercise ==> exercise
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data/r-bioc-genomicalignments-1.26.0/inst/unitTests/test_cigar-utils.R:60: ans ==> and
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data/r-bioc-genomicalignments-1.26.0/inst/unitTests/test_cigar-utils.R:72: ans ==> and
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data/r-bioc-genomicalignments-1.26.0/inst/unitTests/test_cigar-utils.R:80: ans ==> and
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data/r-bioc-genomicalignments-1.26.0/inst/unitTests/test_cigar-utils.R:102: ans ==> and
data/r-bioc-genomicalignments-1.26.0/inst/unitTests/test_cigar-utils.R:105: ans ==> and
data/r-bioc-genomicalignments-1.26.0/inst/unitTests/test_cigar-utils.R:107: ans ==> and
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data/r-bioc-genomicalignments-1.26.0/inst/unitTests/test_coordinate-mapping-methods.R:14: ans ==> and
data/r-bioc-genomicalignments-1.26.0/inst/unitTests/test_coordinate-mapping-methods.R:15: ans ==> and
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data/r-bioc-genomicalignments-1.26.0/inst/unitTests/test_coordinate-mapping-methods.R:18: ans ==> and
data/r-bioc-genomicalignments-1.26.0/inst/unitTests/test_coordinate-mapping-methods.R:19: ans ==> and
data/r-bioc-genomicalignments-1.26.0/inst/unitTests/test_coordinate-mapping-methods.R:20: ans ==> and
data/r-bioc-genomicalignments-1.26.0/inst/unitTests/test_coordinate-mapping-methods.R:22: ans ==> and
data/r-bioc-genomicalignments-1.26.0/inst/unitTests/test_coordinate-mapping-methods.R:23: ans ==> and
data/r-bioc-genomicalignments-1.26.0/inst/unitTests/test_coordinate-mapping-methods.R:24: ans ==> and
data/r-bioc-genomicalignments-1.26.0/inst/unitTests/test_coordinate-mapping-methods.R:32: ans ==> and
data/r-bioc-genomicalignments-1.26.0/inst/unitTests/test_coordinate-mapping-methods.R:33: ans ==> and
data/r-bioc-genomicalignments-1.26.0/inst/unitTests/test_coordinate-mapping-methods.R:34: ans ==> and
data/r-bioc-genomicalignments-1.26.0/inst/unitTests/test_coordinate-mapping-methods.R:35: ans ==> and
data/r-bioc-genomicalignments-1.26.0/inst/unitTests/test_coordinate-mapping-methods.R:36: ans ==> and
data/r-bioc-genomicalignments-1.26.0/inst/unitTests/test_coordinate-mapping-methods.R:37: ans ==> and
data/r-bioc-genomicalignments-1.26.0/inst/unitTests/test_coordinate-mapping-methods.R:41: ans ==> and
data/r-bioc-genomicalignments-1.26.0/inst/unitTests/test_coordinate-mapping-methods.R:42: ans ==> and
data/r-bioc-genomicalignments-1.26.0/inst/unitTests/test_coordinate-mapping-methods.R:43: ans ==> and
data/r-bioc-genomicalignments-1.26.0/inst/unitTests/test_coordinate-mapping-methods.R:49: ans ==> and
data/r-bioc-genomicalignments-1.26.0/inst/unitTests/test_coordinate-mapping-methods.R:50: ans ==> and
data/r-bioc-genomicalignments-1.26.0/inst/unitTests/test_coordinate-mapping-methods.R:51: ans ==> and
data/r-bioc-genomicalignments-1.26.0/inst/unitTests/test_coordinate-mapping-methods.R:52: ans ==> and
data/r-bioc-genomicalignments-1.26.0/inst/unitTests/test_coordinate-mapping-methods.R:58: ans ==> and
data/r-bioc-genomicalignments-1.26.0/inst/unitTests/test_coordinate-mapping-methods.R:59: ans ==> and
data/r-bioc-genomicalignments-1.26.0/inst/unitTests/test_coordinate-mapping-methods.R:60: ans ==> and
data/r-bioc-genomicalignments-1.26.0/inst/unitTests/test_coordinate-mapping-methods.R:61: ans ==> and
data/r-bioc-genomicalignments-1.26.0/inst/unitTests/test_coordinate-mapping-methods.R:62: ans ==> and
data/r-bioc-genomicalignments-1.26.0/inst/unitTests/test_coordinate-mapping-methods.R:63: ans ==> and
data/r-bioc-genomicalignments-1.26.0/inst/unitTests/test_coordinate-mapping-methods.R:64: ans ==> and
data/r-bioc-genomicalignments-1.26.0/inst/unitTests/test_coordinate-mapping-methods.R:68: ans ==> and
data/r-bioc-genomicalignments-1.26.0/inst/unitTests/test_coordinate-mapping-methods.R:69: ans ==> and
data/r-bioc-genomicalignments-1.26.0/inst/unitTests/test_coordinate-mapping-methods.R:70: ans ==> and
data/r-bioc-genomicalignments-1.26.0/inst/unitTests/test_coordinate-mapping-methods.R:71: ans ==> and
data/r-bioc-genomicalignments-1.26.0/inst/unitTests/test_coordinate-mapping-methods.R:79: ans ==> and
data/r-bioc-genomicalignments-1.26.0/inst/unitTests/test_coordinate-mapping-methods.R:80: ans ==> and
data/r-bioc-genomicalignments-1.26.0/inst/unitTests/test_coordinate-mapping-methods.R:81: ans ==> and
data/r-bioc-genomicalignments-1.26.0/inst/unitTests/test_coordinate-mapping-methods.R:82: ans ==> and
data/r-bioc-genomicalignments-1.26.0/inst/unitTests/test_coordinate-mapping-methods.R:83: ans ==> and
data/r-bioc-genomicalignments-1.26.0/inst/unitTests/test_coordinate-mapping-methods.R:84: ans ==> and
data/r-bioc-genomicalignments-1.26.0/inst/unitTests/test_coordinate-mapping-methods.R:85: ans ==> and
data/r-bioc-genomicalignments-1.26.0/inst/unitTests/test_coordinate-mapping-methods.R:90: ans ==> and
data/r-bioc-genomicalignments-1.26.0/inst/unitTests/test_coordinate-mapping-methods.R:91: ans ==> and
data/r-bioc-genomicalignments-1.26.0/inst/unitTests/test_coordinate-mapping-methods.R:92: ans ==> and
data/r-bioc-genomicalignments-1.26.0/inst/unitTests/test_coordinate-mapping-methods.R:93: ans ==> and
data/r-bioc-genomicalignments-1.26.0/inst/unitTests/test_coordinate-mapping-methods.R:94: ans ==> and
data/r-bioc-genomicalignments-1.26.0/inst/unitTests/test_coordinate-mapping-methods.R:102: ans ==> and
data/r-bioc-genomicalignments-1.26.0/inst/unitTests/test_coordinate-mapping-methods.R:104: ans ==> and
data/r-bioc-genomicalignments-1.26.0/inst/unitTests/test_readGAlignments.R:48: FO ==> OF, FOR
data/r-bioc-genomicalignments-1.26.0/inst/unitTests/test_readGAlignments.R:50: FO ==> OF, FOR
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data/r-bioc-genomicalignments-1.26.0/man/GAlignments-class.Rd:323: decending ==> descending
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data/r-bioc-genomicalignments-1.26.0/man/intra-range-methods.Rd:108: matadata ==> metadata
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data/r-bioc-genomicalignments-1.26.0/man/junctions-methods.Rd:162: ouput ==> output
data/r-bioc-genomicalignments-1.26.0/man/junctions-methods.Rd:308: ouput ==> output
data/r-bioc-genomicalignments-1.26.0/man/summarizeOverlaps-methods.Rd:62: funtions ==> functions
data/r-bioc-genomicalignments-1.26.0/man/summarizeOverlaps-methods.Rd:464: ouput ==> output
data/r-bioc-genomicalignments-1.26.0/src/cigar_utils.c:261: ans ==> and
data/r-bioc-genomicalignments-1.26.0/src/cigar_utils.c:269: ans ==> and
data/r-bioc-genomicalignments-1.26.0/src/cigar_utils.c:271: ans ==> and
data/r-bioc-genomicalignments-1.26.0/src/cigar_utils.c:276: ans ==> and
data/r-bioc-genomicalignments-1.26.0/src/cigar_utils.c:282: ans ==> and
data/r-bioc-genomicalignments-1.26.0/src/cigar_utils.c:289: ans ==> and
data/r-bioc-genomicalignments-1.26.0/src/cigar_utils.c:300: ans ==> and
data/r-bioc-genomicalignments-1.26.0/src/cigar_utils.c:353: ans ==> and
data/r-bioc-genomicalignments-1.26.0/src/cigar_utils.c:360: ans ==> and
data/r-bioc-genomicalignments-1.26.0/src/cigar_utils.c:386: ans ==> and
data/r-bioc-genomicalignments-1.26.0/src/cigar_utils.c:390: ans ==> and
data/r-bioc-genomicalignments-1.26.0/src/cigar_utils.c:395: ans ==> and
data/r-bioc-genomicalignments-1.26.0/src/cigar_utils.c:402: ans ==> and
data/r-bioc-genomicalignments-1.26.0/src/cigar_utils.c:422: ans ==> and
data/r-bioc-genomicalignments-1.26.0/src/cigar_utils.c:426: ans ==> and
data/r-bioc-genomicalignments-1.26.0/src/cigar_utils.c:473: ans ==> and
data/r-bioc-genomicalignments-1.26.0/src/cigar_utils.c:480: ans ==> and
data/r-bioc-genomicalignments-1.26.0/src/cigar_utils.c:481: ans ==> and
data/r-bioc-genomicalignments-1.26.0/src/cigar_utils.c:481: ans ==> and
data/r-bioc-genomicalignments-1.26.0/src/cigar_utils.c:482: ans ==> and
data/r-bioc-genomicalignments-1.26.0/src/cigar_utils.c:483: ans ==> and
data/r-bioc-genomicalignments-1.26.0/src/cigar_utils.c:486: ans ==> and
data/r-bioc-genomicalignments-1.26.0/src/cigar_utils.c:506: ans ==> and
data/r-bioc-genomicalignments-1.26.0/src/cigar_utils.c:508: ans ==> and
data/r-bioc-genomicalignments-1.26.0/src/cigar_utils.c:518: ans ==> and
data/r-bioc-genomicalignments-1.26.0/src/cigar_utils.c:520: ans ==> and
data/r-bioc-genomicalignments-1.26.0/src/cigar_utils.c:523: ans ==> and
data/r-bioc-genomicalignments-1.26.0/src/cigar_utils.c:525: ans ==> and
data/r-bioc-genomicalignments-1.26.0/src/cigar_utils.c:531: ans ==> and
data/r-bioc-genomicalignments-1.26.0/src/cigar_utils.c:544: ans ==> and
data/r-bioc-genomicalignments-1.26.0/src/cigar_utils.c:548: ans ==> and
data/r-bioc-genomicalignments-1.26.0/src/cigar_utils.c:587: ans ==> and
data/r-bioc-genomicalignments-1.26.0/src/cigar_utils.c:680: ans ==> and
data/r-bioc-genomicalignments-1.26.0/src/cigar_utils.c:683: ans ==> and
data/r-bioc-genomicalignments-1.26.0/src/cigar_utils.c:696: ans ==> and
data/r-bioc-genomicalignments-1.26.0/src/cigar_utils.c:705: ans ==> and
data/r-bioc-genomicalignments-1.26.0/src/cigar_utils.c:706: ans ==> and
data/r-bioc-genomicalignments-1.26.0/src/cigar_utils.c:737: ans ==> and
data/r-bioc-genomicalignments-1.26.0/src/cigar_utils.c:896: ans ==> and
data/r-bioc-genomicalignments-1.26.0/src/cigar_utils.c:924: ans ==> and
data/r-bioc-genomicalignments-1.26.0/src/cigar_utils.c:925: ans ==> and
data/r-bioc-genomicalignments-1.26.0/src/cigar_utils.c:926: ans ==> and
data/r-bioc-genomicalignments-1.26.0/src/cigar_utils.c:928: ans ==> and
data/r-bioc-genomicalignments-1.26.0/src/cigar_utils.c:1085: ans ==> and
data/r-bioc-genomicalignments-1.26.0/src/cigar_utils.c:1113: ans ==> and
data/r-bioc-genomicalignments-1.26.0/src/cigar_utils.c:1114: ans ==> and
data/r-bioc-genomicalignments-1.26.0/src/cigar_utils.c:1115: ans ==> and
data/r-bioc-genomicalignments-1.26.0/src/cigar_utils.c:1117: ans ==> and
data/r-bioc-genomicalignments-1.26.0/src/coordinate_mapping_methods.c:122: ans ==> and
data/r-bioc-genomicalignments-1.26.0/src/coordinate_mapping_methods.c:149: ans ==> and
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data/r-bioc-genomicalignments-1.26.0/src/coordinate_mapping_methods.c:312: ans ==> and
data/r-bioc-genomicalignments-1.26.0/src/encodeOverlaps_methods.c:223: ans ==> and
data/r-bioc-genomicalignments-1.26.0/src/encodeOverlaps_methods.c:228: ans ==> and
data/r-bioc-genomicalignments-1.26.0/src/encodeOverlaps_methods.c:230: ans ==> and
data/r-bioc-genomicalignments-1.26.0/src/encodeOverlaps_methods.c:230: ans ==> and
data/r-bioc-genomicalignments-1.26.0/src/encodeOverlaps_methods.c:234: ans ==> and
data/r-bioc-genomicalignments-1.26.0/src/encodeOverlaps_methods.c:237: ans ==> and
data/r-bioc-genomicalignments-1.26.0/src/encodeOverlaps_methods.c:240: ans ==> and
data/r-bioc-genomicalignments-1.26.0/src/encodeOverlaps_methods.c:244: ans ==> and
data/r-bioc-genomicalignments-1.26.0/src/encodeOverlaps_methods.c:253: ans ==> and
data/r-bioc-genomicalignments-1.26.0/src/encodeOverlaps_methods.c:257: ans ==> and
data/r-bioc-genomicalignments-1.26.0/src/encodeOverlaps_methods.c:263: ans ==> and
data/r-bioc-genomicalignments-1.26.0/src/encodeOverlaps_methods.c:265: ans ==> and
data/r-bioc-genomicalignments-1.26.0/src/encodeOverlaps_methods.c:277: ans ==> and
data/r-bioc-genomicalignments-1.26.0/src/encodeOverlaps_methods.c:280: ans ==> and
data/r-bioc-genomicalignments-1.26.0/src/encodeOverlaps_methods.c:281: ans ==> and
data/r-bioc-genomicalignments-1.26.0/src/encodeOverlaps_methods.c:282: ans ==> and
data/r-bioc-genomicalignments-1.26.0/src/encodeOverlaps_methods.c:284: ans ==> and
data/r-bioc-genomicalignments-1.26.0/src/encodeOverlaps_methods.c:311: ans ==> and
data/r-bioc-genomicalignments-1.26.0/src/encodeOverlaps_methods.c:334: ans ==> and
data/r-bioc-genomicalignments-1.26.0/src/encodeOverlaps_methods.c:337: ans ==> and
data/r-bioc-genomicalignments-1.26.0/src/encodeOverlaps_methods.c:397: ans ==> and
data/r-bioc-genomicalignments-1.26.0/src/encodeOverlaps_methods.c:431: ans ==> and
data/r-bioc-genomicalignments-1.26.0/src/encodeOverlaps_methods.c:434: ans ==> and
data/r-bioc-genomicalignments-1.26.0/src/encodeOverlaps_methods.c:450: ans ==> and
data/r-bioc-genomicalignments-1.26.0/src/encodeOverlaps_methods.c:486: ans ==> and
data/r-bioc-genomicalignments-1.26.0/src/encodeOverlaps_methods.c:489: ans ==> and
data/r-bioc-genomicalignments-1.26.0/vignettes/OverlapEncodings.Rnw:130: explicitely ==> explicitly
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data/r-bioc-genomicalignments-1.26.0/vignettes/OverlapEncodings.Rnw:224: occurence ==> occurrence
data/r-bioc-genomicalignments-1.26.0/vignettes/OverlapEncodings.Rnw:614: occurences ==> occurrences
data/r-bioc-genomicalignments-1.26.0/vignettes/OverlapEncodings.Rnw:615: occurences ==> occurrences
data/r-bioc-genomicalignments-1.26.0/vignettes/OverlapEncodings.Rnw:616: occurences ==> occurrences
data/r-bioc-genomicalignments-1.26.0/vignettes/OverlapEncodings.Rnw:766: occurences ==> occurrences
data/r-bioc-genomicalignments-1.26.0/vignettes/OverlapEncodings.Rnw:767: occurences ==> occurrences
data/r-bioc-genomicalignments-1.26.0/vignettes/OverlapEncodings.Rnw:768: occurences ==> occurrences
data/r-bioc-genomicalignments-1.26.0/vignettes/OverlapEncodings.Rnw:769: occurences ==> occurrences
data/r-bioc-genomicalignments-1.26.0/vignettes/OverlapEncodings.Rnw:771: occurences ==> occurrences
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data/r-bioc-genomicalignments-1.26.0/vignettes/OverlapEncodings.Rnw:1358: occurences ==> occurrences
data/r-bioc-genomicalignments-1.26.0/vignettes/OverlapEncodings.Rnw:1359: occurences ==> occurrences
data/r-bioc-genomicalignments-1.26.0/vignettes/OverlapEncodings.Rnw:1444: occurences ==> occurrences
data/r-bioc-genomicalignments-1.26.0/vignettes/OverlapEncodings.Rnw:1445: occurences ==> occurrences
data/r-bioc-genomicalignments-1.26.0/vignettes/OverlapEncodings.Rnw:1448: occurences ==> occurrences
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data/r-bioc-genomicalignments-1.26.0/.pc/disable-testing-pasillaBamSubset.patch/inst/unitTests/test_readGAlignmentsList.R:60: FO ==> OF, FOR