data/r-bioc-grohmm-1.24.0/NAMESPACE:10: hist ==> heist, his
data/r-bioc-grohmm-1.24.0/R/detectTranscripts.R:47: Varience ==> Variance
data/r-bioc-grohmm-1.24.0/R/detectTranscripts.R:87: ANS ==> AND
data/r-bioc-grohmm-1.24.0/R/detectTranscripts.R:127: ans ==> and
data/r-bioc-grohmm-1.24.0/R/detectTranscripts.R:129: ans ==> and
data/r-bioc-grohmm-1.24.0/R/detectTranscripts.R:130: ANS ==> AND
data/r-bioc-grohmm-1.24.0/R/detectTranscripts.R:130: ANS ==> AND
data/r-bioc-grohmm-1.24.0/R/detectTranscripts.R:131: ans ==> and
data/r-bioc-grohmm-1.24.0/R/detectTranscripts.R:131: ans ==> and
data/r-bioc-grohmm-1.24.0/R/detectTranscripts.R:134: ANS ==> AND
data/r-bioc-grohmm-1.24.0/R/detectTranscripts.R:134: ANS ==> AND
data/r-bioc-grohmm-1.24.0/R/detectTranscripts.R:135: ans ==> and
data/r-bioc-grohmm-1.24.0/R/detectTranscripts.R:135: ans ==> and
data/r-bioc-grohmm-1.24.0/R/detectTranscripts.R:139: ans ==> and
data/r-bioc-grohmm-1.24.0/R/detectTranscripts.R:141: ans ==> and
data/r-bioc-grohmm-1.24.0/R/detectTranscripts.R:142: ANS ==> AND
data/r-bioc-grohmm-1.24.0/R/detectTranscripts.R:142: ANS ==> AND
data/r-bioc-grohmm-1.24.0/R/detectTranscripts.R:142: ans ==> and
data/r-bioc-grohmm-1.24.0/R/detectTranscripts.R:143: ans ==> and
data/r-bioc-grohmm-1.24.0/R/detectTranscripts.R:143: ans ==> and
data/r-bioc-grohmm-1.24.0/R/detectTranscripts.R:146: ANS ==> AND
data/r-bioc-grohmm-1.24.0/R/detectTranscripts.R:146: ANS ==> AND
data/r-bioc-grohmm-1.24.0/R/detectTranscripts.R:146: ans ==> and
data/r-bioc-grohmm-1.24.0/R/detectTranscripts.R:147: ans ==> and
data/r-bioc-grohmm-1.24.0/R/detectTranscripts.R:147: ans ==> and
data/r-bioc-grohmm-1.24.0/R/detectTranscripts.R:150: ANS ==> AND
data/r-bioc-grohmm-1.24.0/R/detectTranscripts.R:154: ANS ==> AND
data/r-bioc-grohmm-1.24.0/R/detectTranscripts.R:155: ANS ==> AND
data/r-bioc-grohmm-1.24.0/R/detectTranscripts.R:155: ANS ==> AND
data/r-bioc-grohmm-1.24.0/R/detectTranscripts.R:156: ANS ==> AND
data/r-bioc-grohmm-1.24.0/R/detectTranscripts.R:156: ANS ==> AND
data/r-bioc-grohmm-1.24.0/R/detectTranscripts.R:157: ANS ==> AND
data/r-bioc-grohmm-1.24.0/R/detectTranscripts.R:157: ANS ==> AND
data/r-bioc-grohmm-1.24.0/R/detectTranscripts.R:157: ANS ==> AND
data/r-bioc-grohmm-1.24.0/R/fitDistributions.R:29: distrubution ==> distribution
data/r-bioc-grohmm-1.24.0/R/fitDistributions.R:63: varience ==> variance
data/r-bioc-grohmm-1.24.0/R/fitDistributions.R:83: Distrubtion ==> Distribution
data/r-bioc-grohmm-1.24.0/R/fitDistributions.R:83: devined ==> defined
data/r-bioc-grohmm-1.24.0/R/fitDistributions.R:83: varience ==> variance
data/r-bioc-grohmm-1.24.0/R/fitDistributions.R:94: paremeters ==> parameters
data/r-bioc-grohmm-1.24.0/R/fitDistributions.R:98: varience ==> variance
data/r-bioc-grohmm-1.24.0/R/fitDistributions.R:108: varience ==> variance
data/r-bioc-grohmm-1.24.0/R/fitDistributions.R:108: varience ==> variance
data/r-bioc-grohmm-1.24.0/R/limitToXkb.R:22: itnervals ==> intervals
data/r-bioc-grohmm-1.24.0/R/limitToXkb.R:29: coordiates ==> coordinates
data/r-bioc-grohmm-1.24.0/R/limitToXkb.R:34: samll ==> small
data/r-bioc-grohmm-1.24.0/R/limitToXkb.R:171: constrcuted ==> constructed
data/r-bioc-grohmm-1.24.0/R/limitToXkb.R:178: availiable ==> available
data/r-bioc-grohmm-1.24.0/R/makeConsensusAnnotations.R:39: Minimun ==> Minimum
data/r-bioc-grohmm-1.24.0/R/makeConsensusAnnotations.R:41: Minimun ==> Minimum
data/r-bioc-grohmm-1.24.0/R/makeConsensusAnnotations.R:139: sencond ==> second
data/r-bioc-grohmm-1.24.0/R/metaGene.R:219: streches ==> stretches
data/r-bioc-grohmm-1.24.0/R/metaGene.R:361: interger ==> integer
data/r-bioc-grohmm-1.24.0/R/metaGene.R:380: immeidate ==> immediate
data/r-bioc-grohmm-1.24.0/R/metaGene.R:429: currenly ==> currently
data/r-bioc-grohmm-1.24.0/R/pausingIndex.R:329: aCI ==> acpi
data/r-bioc-grohmm-1.24.0/R/pausingIndex.R:331: aCI ==> acpi
data/r-bioc-grohmm-1.24.0/R/pausingIndex.R:332: aCI ==> acpi
data/r-bioc-grohmm-1.24.0/R/polymeraseWave.R:48: expetation ==> expectation
data/r-bioc-grohmm-1.24.0/R/polymeraseWave.R:90: availiable ==> available
data/r-bioc-grohmm-1.24.0/R/polymeraseWave.R:144: ANS ==> AND
data/r-bioc-grohmm-1.24.0/R/polymeraseWave.R:242: hist ==> heist, his
data/r-bioc-grohmm-1.24.0/R/polymeraseWave.R:244: hist ==> heist, his
data/r-bioc-grohmm-1.24.0/R/polymeraseWave.R:262: paremeter ==> parameter
data/r-bioc-grohmm-1.24.0/R/polymeraseWave.R:271: paremeters ==> parameters
data/r-bioc-grohmm-1.24.0/R/polymeraseWave.R:274: varience ==> variance
data/r-bioc-grohmm-1.24.0/R/polymeraseWave.R:341: ans ==> and
data/r-bioc-grohmm-1.24.0/R/polymeraseWave.R:342: ans ==> and
data/r-bioc-grohmm-1.24.0/R/polymeraseWave.R:347: ans ==> and
data/r-bioc-grohmm-1.24.0/R/polymeraseWave.R:350: ans ==> and
data/r-bioc-grohmm-1.24.0/R/polymeraseWave.R:351: ans ==> and
data/r-bioc-grohmm-1.24.0/R/polymeraseWave.R:352: ans ==> and
data/r-bioc-grohmm-1.24.0/R/polymeraseWave.R:353: ans ==> and
data/r-bioc-grohmm-1.24.0/R/polymeraseWave.R:354: ans ==> and
data/r-bioc-grohmm-1.24.0/R/polymeraseWave.R:355: ans ==> and
data/r-bioc-grohmm-1.24.0/R/polymeraseWave.R:356: ans ==> and
data/r-bioc-grohmm-1.24.0/R/polymeraseWave.R:359: ans ==> and
data/r-bioc-grohmm-1.24.0/R/polymeraseWave.R:412: ANS ==> AND
data/r-bioc-grohmm-1.24.0/R/polymeraseWave.R:439: ans ==> and
data/r-bioc-grohmm-1.24.0/R/polymeraseWave.R:440: ans ==> and
data/r-bioc-grohmm-1.24.0/R/polymeraseWave.R:447: ANS ==> AND
data/r-bioc-grohmm-1.24.0/R/tlsFits.R:28: Rotats ==> Rotates, rotate
data/r-bioc-grohmm-1.24.0/R/tlsFits.R:30: varience ==> variance
data/r-bioc-grohmm-1.24.0/R/tlsFits.R:54: erros ==> errors
data/r-bioc-grohmm-1.24.0/R/windowAnalysis.R:36: avaliable ==> available
data/r-bioc-grohmm-1.24.0/R/writeWiggle.R:30: speicified ==> specified
data/r-bioc-grohmm-1.24.0/inst/doc/groHMM.Rnw:62: pipleline ==> pipeline
data/r-bioc-grohmm-1.24.0/inst/doc/groHMM.Rnw:296: tunning ==> tuning
data/r-bioc-grohmm-1.24.0/man/Rnorm.Rd:16: varience ==> variance
data/r-bioc-grohmm-1.24.0/man/Rnorm.exp.Rd:19: paremeters ==> parameters
data/r-bioc-grohmm-1.24.0/man/Rnorm.exp.Rd:27: varience ==> variance
data/r-bioc-grohmm-1.24.0/man/Rnorm.exp.Rd:30: Distrubtion ==> Distribution
data/r-bioc-grohmm-1.24.0/man/Rnorm.exp.Rd:30: devined ==> defined
data/r-bioc-grohmm-1.24.0/man/Rnorm.exp.Rd:30: varience ==> variance
data/r-bioc-grohmm-1.24.0/man/detectTranscripts.Rd:27: Varience ==> Variance
data/r-bioc-grohmm-1.24.0/man/limitToXkb.Rd:5: itnervals ==> intervals
data/r-bioc-grohmm-1.24.0/man/limitToXkb.Rd:19: coordiates ==> coordinates
data/r-bioc-grohmm-1.24.0/man/limitToXkb.Rd:22: itnervals ==> intervals
data/r-bioc-grohmm-1.24.0/man/makeConsensusAnnotations.Rd:12: Minimun ==> Minimum
data/r-bioc-grohmm-1.24.0/man/makeConsensusAnnotations.Rd:15: Minimun ==> Minimum
data/r-bioc-grohmm-1.24.0/man/polymeraseWave.Rd:60: availiable ==> available
data/r-bioc-grohmm-1.24.0/man/polymeraseWave.Rd:87: expetation ==> expectation
data/r-bioc-grohmm-1.24.0/man/readBed.Rd:5: constrcuted ==> constructed
data/r-bioc-grohmm-1.24.0/man/readBed.Rd:24: availiable ==> available
data/r-bioc-grohmm-1.24.0/man/windowAnalysis.Rd:24: avaliable ==> available
data/r-bioc-grohmm-1.24.0/man/writeWiggle.Rd:19: speicified ==> specified
data/r-bioc-grohmm-1.24.0/src/DecayAlgorithm.c:27: funcitons ==> functions
data/r-bioc-grohmm-1.24.0/src/DecayAlgorithm.c:67: reutrn ==> return
data/r-bioc-grohmm-1.24.0/src/DecayAlgorithm.c:67: origional ==> original
data/r-bioc-grohmm-1.24.0/src/DecayAlgorithm.c:85: DEPRICATED ==> DEPRECATED
data/r-bioc-grohmm-1.24.0/src/DecayAlgorithm.c:90: DEPRICATED ==> DEPRECATED
data/r-bioc-grohmm-1.24.0/src/MLEfit.c:78: paremeters ==> parameters
data/r-bioc-grohmm-1.24.0/src/MLEfit.c:132: thrid ==> third
data/r-bioc-grohmm-1.24.0/src/MLEfit.c:171: paremeter ==> parameter
data/r-bioc-grohmm-1.24.0/src/MLEfit.c:206: paremeter ==> parameter
data/r-bioc-grohmm-1.24.0/src/MLEfit.c:309: shoudl ==> should
data/r-bioc-grohmm-1.24.0/src/MLEfit.c:392: compatable ==> compatible
data/r-bioc-grohmm-1.24.0/src/Windowing.c:27: funcitons ==> functions
data/r-bioc-grohmm-1.24.0/src/Windowing.c:205: ans ==> and
data/r-bioc-grohmm-1.24.0/src/Windowing.c:213: orderd ==> ordered
data/r-bioc-grohmm-1.24.0/src/Windowing.c:230: ans ==> and
data/r-bioc-grohmm-1.24.0/src/Windowing.c:255: ans ==> and
data/r-bioc-grohmm-1.24.0/src/Windowing.c:268: ans ==> and
data/r-bioc-grohmm-1.24.0/src/Windowing.c:281: ans ==> and
data/r-bioc-grohmm-1.24.0/src/Windowing.c:288: ans ==> and
data/r-bioc-grohmm-1.24.0/src/Windowing.c:292: ans ==> and
data/r-bioc-grohmm-1.24.0/src/hmmEM.c:34: algorthm ==> algorithm
data/r-bioc-grohmm-1.24.0/src/hmmEM.c:143: paremeters ==> parameters
data/r-bioc-grohmm-1.24.0/src/hmmEM.c:241: paremeters ==> parameters
data/r-bioc-grohmm-1.24.0/src/hmmEM.c:251: paremeters ==> parameters
data/r-bioc-grohmm-1.24.0/src/hmmEM.c:388: paremeters ==> parameters
data/r-bioc-grohmm-1.24.0/src/hmmEM.c:421: enviroment ==> environment
data/r-bioc-grohmm-1.24.0/src/hmmFwBw.c:83: implementaitons ==> implementations
data/r-bioc-grohmm-1.24.0/src/hmmFwBw.c:158: debuging ==> debugging
data/r-bioc-grohmm-1.24.0/src/hmmHeader.h:215: paremeters ==> parameters
data/r-bioc-grohmm-1.24.0/src/hmmHeader.h:273: complience ==> compliance
data/r-bioc-grohmm-1.24.0/src/hmmMiscFunctions.c:61: contiguos ==> contiguous
data/r-bioc-grohmm-1.24.0/src/hmmMiscFunctions.c:92: contiguos ==> contiguous
data/r-bioc-grohmm-1.24.0/src/hmmMiscFunctions.c:122: paremeters ==> parameters
data/r-bioc-grohmm-1.24.0/src/hmmMiscFunctions.c:200: paremeters ==> parameters
data/r-bioc-grohmm-1.24.0/src/hmmMiscFunctions.c:360: varience ==> variance
data/r-bioc-grohmm-1.24.0/src/hmmMiscFunctions.c:364: varience ==> variance
data/r-bioc-grohmm-1.24.0/src/hmmMiscFunctions.c:375: DOSEN'T ==> DOESN'T
data/r-bioc-grohmm-1.24.0/src/hmmMiscFunctions.c:603: paremeters ==> parameters
data/r-bioc-grohmm-1.24.0/src/hmmViterbi.c:170: paremeters ==> parameters
data/r-bioc-grohmm-1.24.0/vignettes/groHMM.Rnw:62: pipleline ==> pipeline
data/r-bioc-grohmm-1.24.0/vignettes/groHMM.Rnw:296: tunning ==> tuning