data/r-bioc-metagenomeseq-1.32.0/DESCRIPTION:9: Taxanomic ==> Taxonomic
data/r-bioc-metagenomeseq-1.32.0/DESCRIPTION:9: OTU ==> OUT
data/r-bioc-metagenomeseq-1.32.0/NEWS:3: adustment ==> adjustment
data/r-bioc-metagenomeseq-1.32.0/NEWS:43: OTU ==> OUT
data/r-bioc-metagenomeseq-1.32.0/NEWS:73: OTU ==> OUT
data/r-bioc-metagenomeseq-1.32.0/README.md:10: Taxanomic ==> Taxonomic
data/r-bioc-metagenomeseq-1.32.0/README.md:10: OTU ==> OUT
data/r-bioc-metagenomeseq-1.32.0/R/MRcoefs.R:89: adjusment ==> adjustment
data/r-bioc-metagenomeseq-1.32.0/R/MRexperiment2biom.R:18: OTU ==> OUT
data/r-bioc-metagenomeseq-1.32.0/R/allClasses.R:184: OTU ==> OUT
data/r-bioc-metagenomeseq-1.32.0/R/filterData.R:7: postive ==> positive
data/r-bioc-metagenomeseq-1.32.0/R/fitTimeSeries.R:62: Inputed ==> Inputted
data/r-bioc-metagenomeseq-1.32.0/R/fitTimeSeries.R:95: permuation ==> permutation
data/r-bioc-metagenomeseq-1.32.0/R/fitTimeSeries.R:230: OTU ==> OUT
data/r-bioc-metagenomeseq-1.32.0/R/fitTimeSeries.R:344: OTU ==> OUT
data/r-bioc-metagenomeseq-1.32.0/R/fitTimeSeries.R:497: OTU ==> OUT
data/r-bioc-metagenomeseq-1.32.0/R/loadMetaQ.R:8: otu ==> out
data/r-bioc-metagenomeseq-1.32.0/R/plotBubble.R:15: signficant ==> significant
data/r-bioc-metagenomeseq-1.32.0/R/plotFeature.R:3: OTU ==> OUT
data/r-bioc-metagenomeseq-1.32.0/R/plotGenus.R:3: OTU ==> OUT
data/r-bioc-metagenomeseq-1.32.0/R/plotOTU.R:3: OTU ==> OUT
data/r-bioc-metagenomeseq-1.32.0/R/plotOTU.R:9: otu ==> out
data/r-bioc-metagenomeseq-1.32.0/R/plotOTU.R:9: OTU ==> OUT
data/r-bioc-metagenomeseq-1.32.0/R/plotOTU.R:28: otu ==> out
data/r-bioc-metagenomeseq-1.32.0/R/plotOTU.R:31: otu ==> out
data/r-bioc-metagenomeseq-1.32.0/R/plotOTU.R:35: otu ==> out
data/r-bioc-metagenomeseq-1.32.0/R/plotOTU.R:44: otu ==> out
data/r-bioc-metagenomeseq-1.32.0/R/plotOrd.R:26: euclidian ==> euclidean
data/r-bioc-metagenomeseq-1.32.0/inst/doc/fitTimeSeries.Rnw:80: OTU ==> OUT
data/r-bioc-metagenomeseq-1.32.0/inst/doc/fitTimeSeries.Rnw:238: Paramaters ==> Parameters
data/r-bioc-metagenomeseq-1.32.0/inst/doc/fitTimeSeries.Rnw:248: OTU ==> OUT
data/r-bioc-metagenomeseq-1.32.0/inst/doc/metagenomeSeq.R:263: OTU ==> OUT
data/r-bioc-metagenomeseq-1.32.0/inst/doc/metagenomeSeq.R:272: otu ==> out
data/r-bioc-metagenomeseq-1.32.0/inst/doc/metagenomeSeq.R:275: otu ==> out
data/r-bioc-metagenomeseq-1.32.0/inst/doc/metagenomeSeq.R:275: otu ==> out
data/r-bioc-metagenomeseq-1.32.0/inst/doc/metagenomeSeq.R:278: otu ==> out
data/r-bioc-metagenomeseq-1.32.0/inst/doc/metagenomeSeq.Rnw:53: taxanomic ==> taxonomic
data/r-bioc-metagenomeseq-1.32.0/inst/doc/metagenomeSeq.Rnw:57: Taxanomic ==> Taxonomic
data/r-bioc-metagenomeseq-1.32.0/inst/doc/metagenomeSeq.Rnw:57: OTU ==> OUT
data/r-bioc-metagenomeseq-1.32.0/inst/doc/metagenomeSeq.Rnw:71: OTU ==> OUT
data/r-bioc-metagenomeseq-1.32.0/inst/doc/metagenomeSeq.Rnw:112: OTU ==> OUT
data/r-bioc-metagenomeseq-1.32.0/inst/doc/metagenomeSeq.Rnw:113: OTU ==> OUT
data/r-bioc-metagenomeseq-1.32.0/inst/doc/metagenomeSeq.Rnw:159: OTU ==> OUT
data/r-bioc-metagenomeseq-1.32.0/inst/doc/metagenomeSeq.Rnw:242: OTU ==> OUT
data/r-bioc-metagenomeseq-1.32.0/inst/doc/metagenomeSeq.Rnw:290: preferrable ==> preferable
data/r-bioc-metagenomeseq-1.32.0/inst/doc/metagenomeSeq.Rnw:321: OTU ==> OUT
data/r-bioc-metagenomeseq-1.32.0/inst/doc/metagenomeSeq.Rnw:340: OTU ==> OUT
data/r-bioc-metagenomeseq-1.32.0/inst/doc/metagenomeSeq.Rnw:344: acheive ==> achieve
data/r-bioc-metagenomeseq-1.32.0/inst/doc/metagenomeSeq.Rnw:509: OTU ==> OUT
data/r-bioc-metagenomeseq-1.32.0/inst/doc/metagenomeSeq.Rnw:577: OTU ==> OUT
data/r-bioc-metagenomeseq-1.32.0/inst/doc/metagenomeSeq.Rnw:596: OTU ==> OUT
data/r-bioc-metagenomeseq-1.32.0/inst/doc/metagenomeSeq.Rnw:630: OTU ==> OUT
data/r-bioc-metagenomeseq-1.32.0/inst/doc/metagenomeSeq.Rnw:633: OTU ==> OUT
data/r-bioc-metagenomeseq-1.32.0/inst/doc/metagenomeSeq.Rnw:642: otu ==> out
data/r-bioc-metagenomeseq-1.32.0/inst/doc/metagenomeSeq.Rnw:645: otu ==> out
data/r-bioc-metagenomeseq-1.32.0/inst/doc/metagenomeSeq.Rnw:645: otu ==> out
data/r-bioc-metagenomeseq-1.32.0/inst/doc/metagenomeSeq.Rnw:648: otu ==> out
data/r-bioc-metagenomeseq-1.32.0/inst/doc/metagenomeSeq.Rnw:690: formated ==> formatted
data/r-bioc-metagenomeseq-1.32.0/inst/doc/metagenomeSeq.Rnw:692: taxanomic ==> taxonomic
data/r-bioc-metagenomeseq-1.32.0/inst/extdata/CHK_NAME.otus.count.csv:1: OTU ==> OUT
data/r-bioc-metagenomeseq-1.32.0/inst/extdata/CHK_otus.taxonomy.csv:1: OTU ==> OUT
data/r-bioc-metagenomeseq-1.32.0/man/MRexperiment-class.Rd:36: OTU ==> OUT
data/r-bioc-metagenomeseq-1.32.0/man/filterData.Rd:12: postive ==> positive
data/r-bioc-metagenomeseq-1.32.0/man/fitMultipleTimeSeries.Rd:12: OTU ==> OUT
data/r-bioc-metagenomeseq-1.32.0/man/fitSSTimeSeries.Rd:38: OTU ==> OUT
data/r-bioc-metagenomeseq-1.32.0/man/fitTimeSeries.Rd:41: OTU ==> OUT
data/r-bioc-metagenomeseq-1.32.0/man/loadMetaQ.Rd:14: otu ==> out
data/r-bioc-metagenomeseq-1.32.0/man/lungData.Rd:5: OTU ==> OUT
data/r-bioc-metagenomeseq-1.32.0/man/lungData.Rd:6: OTU ==> OUT
data/r-bioc-metagenomeseq-1.32.0/man/lungData.Rd:6: otu ==> out
data/r-bioc-metagenomeseq-1.32.0/man/lungData.Rd:6: OTU ==> OUT
data/r-bioc-metagenomeseq-1.32.0/man/lungData.Rd:11: OTU ==> OUT
data/r-bioc-metagenomeseq-1.32.0/man/metagenomeSeq-package.Rd:7: Taxanomic ==> Taxonomic
data/r-bioc-metagenomeseq-1.32.0/man/metagenomeSeq-package.Rd:7: OTU ==> OUT
data/r-bioc-metagenomeseq-1.32.0/man/mouseData.Rd:5: OTU ==> OUT
data/r-bioc-metagenomeseq-1.32.0/man/mouseData.Rd:6: OTU ==> OUT
data/r-bioc-metagenomeseq-1.32.0/man/mouseData.Rd:6: OTU ==> OUT
data/r-bioc-metagenomeseq-1.32.0/man/mouseData.Rd:6: otu ==> out
data/r-bioc-metagenomeseq-1.32.0/man/mouseData.Rd:11: OTU ==> OUT
data/r-bioc-metagenomeseq-1.32.0/man/newMRexperiment.Rd:18: OTU ==> OUT
data/r-bioc-metagenomeseq-1.32.0/man/plotBubble.Rd:34: signficant ==> significant
data/r-bioc-metagenomeseq-1.32.0/man/plotFeature.Rd:45: OTU ==> OUT
data/r-bioc-metagenomeseq-1.32.0/man/plotGenus.Rd:55: OTU ==> OUT
data/r-bioc-metagenomeseq-1.32.0/man/plotOTU.Rd:9: otu ==> out
data/r-bioc-metagenomeseq-1.32.0/man/plotOTU.Rd:25: otu ==> out
data/r-bioc-metagenomeseq-1.32.0/man/plotOTU.Rd:25: OTU ==> OUT
data/r-bioc-metagenomeseq-1.32.0/man/plotOTU.Rd:51: OTU ==> OUT
data/r-bioc-metagenomeseq-1.32.0/man/plotOTU.Rd:61: otu ==> out
data/r-bioc-metagenomeseq-1.32.0/man/plotOrd.Rd:16: euclidian ==> euclidean
data/r-bioc-metagenomeseq-1.32.0/man/ssFit.Rd:37: Inputed ==> Inputted
data/r-bioc-metagenomeseq-1.32.0/man/ssPerm.Rd:18: permuation ==> permutation
data/r-bioc-metagenomeseq-1.32.0/vignettes/fitTimeSeries.Rnw:80: OTU ==> OUT
data/r-bioc-metagenomeseq-1.32.0/vignettes/fitTimeSeries.Rnw:238: Paramaters ==> Parameters
data/r-bioc-metagenomeseq-1.32.0/vignettes/fitTimeSeries.Rnw:248: OTU ==> OUT
data/r-bioc-metagenomeseq-1.32.0/vignettes/metagenomeSeq.Rnw:53: taxanomic ==> taxonomic
data/r-bioc-metagenomeseq-1.32.0/vignettes/metagenomeSeq.Rnw:57: Taxanomic ==> Taxonomic
data/r-bioc-metagenomeseq-1.32.0/vignettes/metagenomeSeq.Rnw:57: OTU ==> OUT
data/r-bioc-metagenomeseq-1.32.0/vignettes/metagenomeSeq.Rnw:71: OTU ==> OUT
data/r-bioc-metagenomeseq-1.32.0/vignettes/metagenomeSeq.Rnw:112: OTU ==> OUT
data/r-bioc-metagenomeseq-1.32.0/vignettes/metagenomeSeq.Rnw:113: OTU ==> OUT
data/r-bioc-metagenomeseq-1.32.0/vignettes/metagenomeSeq.Rnw:159: OTU ==> OUT
data/r-bioc-metagenomeseq-1.32.0/vignettes/metagenomeSeq.Rnw:242: OTU ==> OUT
data/r-bioc-metagenomeseq-1.32.0/vignettes/metagenomeSeq.Rnw:290: preferrable ==> preferable
data/r-bioc-metagenomeseq-1.32.0/vignettes/metagenomeSeq.Rnw:321: OTU ==> OUT
data/r-bioc-metagenomeseq-1.32.0/vignettes/metagenomeSeq.Rnw:340: OTU ==> OUT
data/r-bioc-metagenomeseq-1.32.0/vignettes/metagenomeSeq.Rnw:344: acheive ==> achieve
data/r-bioc-metagenomeseq-1.32.0/vignettes/metagenomeSeq.Rnw:509: OTU ==> OUT
data/r-bioc-metagenomeseq-1.32.0/vignettes/metagenomeSeq.Rnw:577: OTU ==> OUT
data/r-bioc-metagenomeseq-1.32.0/vignettes/metagenomeSeq.Rnw:596: OTU ==> OUT
data/r-bioc-metagenomeseq-1.32.0/vignettes/metagenomeSeq.Rnw:630: OTU ==> OUT
data/r-bioc-metagenomeseq-1.32.0/vignettes/metagenomeSeq.Rnw:633: OTU ==> OUT
data/r-bioc-metagenomeseq-1.32.0/vignettes/metagenomeSeq.Rnw:642: otu ==> out
data/r-bioc-metagenomeseq-1.32.0/vignettes/metagenomeSeq.Rnw:645: otu ==> out
data/r-bioc-metagenomeseq-1.32.0/vignettes/metagenomeSeq.Rnw:645: otu ==> out
data/r-bioc-metagenomeseq-1.32.0/vignettes/metagenomeSeq.Rnw:648: otu ==> out
data/r-bioc-metagenomeseq-1.32.0/vignettes/metagenomeSeq.Rnw:690: formated ==> formatted
data/r-bioc-metagenomeseq-1.32.0/vignettes/metagenomeSeq.Rnw:692: taxanomic ==> taxonomic
data/r-bioc-metagenomeseq-1.32.0/debian/README.source:6: OTU ==> OUT
data/r-bioc-metagenomeseq-1.32.0/debian/README.source:6: otu ==> out
data/r-bioc-metagenomeseq-1.32.0/debian/README.source:7: OTU ==> OUT
data/r-bioc-metagenomeseq-1.32.0/debian/README.source:12: OTU ==> OUT
data/r-bioc-metagenomeseq-1.32.0/debian/README.source:12: OTU ==> OUT
data/r-bioc-metagenomeseq-1.32.0/debian/README.source:13: otu ==> out
data/r-bioc-metagenomeseq-1.32.0/debian/control:33: Taxanomic ==> Taxonomic
data/r-bioc-metagenomeseq-1.32.0/debian/control:33: OTU ==> OUT
data/r-bioc-metagenomeseq-1.32.0/debian/copyright:106: MERCHANTIBILITY ==> MERCHANTABILITY