data/r-bioc-monocle-2.18.0/R/BEAM.R:352: branchs ==> branches
data/r-bioc-monocle-2.18.0/R/BEAM.R:493: hirearchy ==> hierarchy
data/r-bioc-monocle-2.18.0/R/BEAM.R:497: branchs ==> branches
data/r-bioc-monocle-2.18.0/R/BEAM.R:508: stablize ==> stabilize
data/r-bioc-monocle-2.18.0/R/BEAM.R:509: branchs ==> branches
data/r-bioc-monocle-2.18.0/R/BEAM.R:674: branchs ==> branches
data/r-bioc-monocle-2.18.0/R/BEAM.R:681: stablize ==> stabilize
data/r-bioc-monocle-2.18.0/R/BEAM.R:682: branchs ==> branches
data/r-bioc-monocle-2.18.0/R/CellDataSet.R:22: auxilliary ==> auxiliary
data/r-bioc-monocle-2.18.0/R/cds_conversion.R:11: setted ==> set
data/r-bioc-monocle-2.18.0/R/clustering.R:64: multipled ==> multiplied
data/r-bioc-monocle-2.18.0/R/clustering.R:68: coefficent ==> coefficient
data/r-bioc-monocle-2.18.0/R/expr_models.R:399: ans ==> and
data/r-bioc-monocle-2.18.0/R/expr_models.R:401: ans ==> and
data/r-bioc-monocle-2.18.0/R/expr_models.R:409: accpets ==> accepts
data/r-bioc-monocle-2.18.0/R/expr_models.R:547: ans ==> and
data/r-bioc-monocle-2.18.0/R/expr_models.R:549: ans ==> and
data/r-bioc-monocle-2.18.0/R/expr_models.R:553: ans ==> and
data/r-bioc-monocle-2.18.0/R/methods-CellTypeHierarchy.R:209: multipled ==> multiplied
data/r-bioc-monocle-2.18.0/R/normalization.R:102: occuring ==> occurring
data/r-bioc-monocle-2.18.0/R/normalization.R:105: occuring ==> occurring
data/r-bioc-monocle-2.18.0/R/normalization.R:107: occuring ==> occurring
data/r-bioc-monocle-2.18.0/R/normalization.R:138: anouncement ==> announcement
data/r-bioc-monocle-2.18.0/R/normalization.R:171: algoritm ==> algorithm
data/r-bioc-monocle-2.18.0/R/normalization.R:187: anouncement ==> announcement
data/r-bioc-monocle-2.18.0/R/order_cells.R:93: remaing ==> remaining
data/r-bioc-monocle-2.18.0/R/order_cells.R:966: gaurd ==> guard, gourd
data/r-bioc-monocle-2.18.0/R/order_cells.R:1708: inbetween ==> between, in between
data/r-bioc-monocle-2.18.0/R/order_cells.R:1735: intial ==> initial
data/r-bioc-monocle-2.18.0/R/plotting.R:167: funtionality ==> functionality
data/r-bioc-monocle-2.18.0/R/plotting.R:288: layed ==> laid
data/r-bioc-monocle-2.18.0/R/plotting.R:418: layed ==> laid
data/r-bioc-monocle-2.18.0/R/plotting.R:545: layed ==> laid
data/r-bioc-monocle-2.18.0/R/plotting.R:653: layed ==> laid
data/r-bioc-monocle-2.18.0/R/plotting.R:1116: committment ==> commitment
data/r-bioc-monocle-2.18.0/R/plotting.R:1284: branchs ==> branches
data/r-bioc-monocle-2.18.0/R/plotting.R:1286: branchs ==> branches
data/r-bioc-monocle-2.18.0/R/plotting.R:1289: branchs ==> branches
data/r-bioc-monocle-2.18.0/R/plotting.R:1297: layed ==> laid
data/r-bioc-monocle-2.18.0/R/plotting.R:1614: pallette ==> palette
data/r-bioc-monocle-2.18.0/R/plotting.R:1657: branchs ==> branches
data/r-bioc-monocle-2.18.0/R/plotting.R:1668: branchs ==> branches
data/r-bioc-monocle-2.18.0/R/plotting.R:1685: committment ==> commitment
data/r-bioc-monocle-2.18.0/R/plotting.R:2003: funtionality ==> functionality
data/r-bioc-monocle-2.18.0/R/plotting.R:2344: funtionality ==> functionality
data/r-bioc-monocle-2.18.0/R/plotting.R:2419: committment ==> commitment
data/r-bioc-monocle-2.18.0/R/plotting.R:2623: layed ==> laid
data/r-bioc-monocle-2.18.0/R/utils.R:430: representive ==> representative
data/r-bioc-monocle-2.18.0/actual_vignette_holder/monocle-vignette-original.Rnw:22: Massachussetts ==> Massachusetts
data/r-bioc-monocle-2.18.0/actual_vignette_holder/monocle-vignette-original.Rnw:333: specifc ==> specific
data/r-bioc-monocle-2.18.0/actual_vignette_holder/monocle-vignette-original.Rnw:444: memeory ==> memory
data/r-bioc-monocle-2.18.0/actual_vignette_holder/monocle-vignette-original.Rnw:510: acceptible ==> acceptable
data/r-bioc-monocle-2.18.0/actual_vignette_holder/monocle-vignette-original.Rnw:512: frome ==> from
data/r-bioc-monocle-2.18.0/actual_vignette_holder/monocle-vignette-original.Rnw:526: expresion ==> expression
data/r-bioc-monocle-2.18.0/actual_vignette_holder/monocle-vignette-original.Rnw:693: thats ==> that's
data/r-bioc-monocle-2.18.0/actual_vignette_holder/monocle-vignette-original.Rnw:720: througout ==> throughout
data/r-bioc-monocle-2.18.0/actual_vignette_holder/monocle-vignette-original.Rnw:1071: convinient ==> convenient
data/r-bioc-monocle-2.18.0/actual_vignette_holder/monocle-vignette-original.Rnw:1181: Occassionally ==> Occasionally
data/r-bioc-monocle-2.18.0/actual_vignette_holder/monocle-vignette-original.Rnw:1309: signficant ==> significant
data/r-bioc-monocle-2.18.0/actual_vignette_holder/monocle-vignette-original.Rnw:1336: stragegy ==> strategy
data/r-bioc-monocle-2.18.0/actual_vignette_holder/monocle-vignette-original.Rnw:1341: Appling ==> Applying, appalling
data/r-bioc-monocle-2.18.0/actual_vignette_holder/monocle-vignette-original.Rnw:1365: explictly ==> explicitly
data/r-bioc-monocle-2.18.0/actual_vignette_holder/monocle-vignette-original.Rnw:1454: algoritm ==> algorithm
data/r-bioc-monocle-2.18.0/actual_vignette_holder/monocle-vignette-original.Rnw:1509: stragegy ==> strategy
data/r-bioc-monocle-2.18.0/actual_vignette_holder/monocle-vignette-original.Rnw:1567: implmentation ==> implementation
data/r-bioc-monocle-2.18.0/inst/doc/monocle-vignette.Rnw:22: Massachussetts ==> Massachusetts
data/r-bioc-monocle-2.18.0/man/CellDataSet.Rd:39: auxilliary ==> auxiliary
data/r-bioc-monocle-2.18.0/man/calABCs.Rd:44: branchs ==> branches
data/r-bioc-monocle-2.18.0/man/calILRs.Rd:33: stablize ==> stabilize
data/r-bioc-monocle-2.18.0/man/calILRs.Rd:34: branchs ==> branches
data/r-bioc-monocle-2.18.0/man/calILRs.Rd:55: hirearchy ==> hierarchy
data/r-bioc-monocle-2.18.0/man/calILRs.Rd:59: branchs ==> branches
data/r-bioc-monocle-2.18.0/man/calibrate_per_cell_total_proposal.Rd:17: anouncement ==> announcement
data/r-bioc-monocle-2.18.0/man/clusterCells.Rd:37: multipled ==> multiplied
data/r-bioc-monocle-2.18.0/man/clusterCells.Rd:45: coefficent ==> coefficient
data/r-bioc-monocle-2.18.0/man/detectBifurcationPoint.Rd:28: branchs ==> branches
data/r-bioc-monocle-2.18.0/man/detectBifurcationPoint.Rd:42: stablize ==> stabilize
data/r-bioc-monocle-2.18.0/man/detectBifurcationPoint.Rd:43: branchs ==> branches
data/r-bioc-monocle-2.18.0/man/estimateSizeFactorsForMatrix.Rd:15: representive ==> representative
data/r-bioc-monocle-2.18.0/man/estimate_t.Rd:5: occuring ==> occurring
data/r-bioc-monocle-2.18.0/man/estimate_t.Rd:24: occuring ==> occurring
data/r-bioc-monocle-2.18.0/man/estimate_t.Rd:26: occuring ==> occurring
data/r-bioc-monocle-2.18.0/man/exportCDS.Rd:16: setted ==> set
data/r-bioc-monocle-2.18.0/man/newCellTypeHierarchy.Rd:24: multipled ==> multiplied
data/r-bioc-monocle-2.18.0/man/plot_genes_branched_heatmap.Rd:5: branchs ==> branches
data/r-bioc-monocle-2.18.0/man/plot_genes_branched_heatmap.Rd:30: branchs ==> branches
data/r-bioc-monocle-2.18.0/man/plot_genes_branched_heatmap.Rd:65: committment ==> commitment
data/r-bioc-monocle-2.18.0/man/plot_genes_branched_heatmap.Rd:69: branchs ==> branches
data/r-bioc-monocle-2.18.0/man/plot_genes_branched_pseudotime.Rd:18: branchs ==> branches
data/r-bioc-monocle-2.18.0/man/plot_genes_branched_pseudotime.Rd:34: layed ==> laid
data/r-bioc-monocle-2.18.0/man/plot_genes_branched_pseudotime.Rd:59: branchs ==> branches
data/r-bioc-monocle-2.18.0/man/plot_genes_branched_pseudotime.Rd:61: branchs ==> branches
data/r-bioc-monocle-2.18.0/man/plot_genes_in_pseudotime.Rd:23: layed ==> laid
data/r-bioc-monocle-2.18.0/man/plot_genes_jitter.Rd:25: layed ==> laid
data/r-bioc-monocle-2.18.0/man/plot_genes_positive_cells.Rd:23: layed ==> laid
data/r-bioc-monocle-2.18.0/man/plot_genes_violin.Rd:25: layed ==> laid
data/r-bioc-monocle-2.18.0/man/plot_multiple_branches_heatmap.Rd:51: committment ==> commitment
data/r-bioc-monocle-2.18.0/man/plot_multiple_branches_pseudotime.Rd:30: layed ==> laid
data/r-bioc-monocle-2.18.0/man/plot_pseudotime_heatmap.Rd:47: committment ==> commitment
data/r-bioc-monocle-2.18.0/man/relative2abs.Rd:41: anouncement ==> announcement
data/r-bioc-monocle-2.18.0/man/relative2abs.Rd:60: algoritm ==> algorithm
data/r-bioc-monocle-2.18.0/man/vstExprs.Rd:21: accpets ==> accepts
data/r-bioc-monocle-2.18.0/src/clustering.cpp:8: determinded ==> determined
data/r-bioc-monocle-2.18.0/vignettes/framed.sty:73: ouside ==> outside
data/r-bioc-monocle-2.18.0/vignettes/monocle-vignette-knitr.tex:72: Massachussetts ==> Massachusetts
data/r-bioc-monocle-2.18.0/vignettes/monocle-vignette-knitr.tex:458: specifc ==> specific
data/r-bioc-monocle-2.18.0/vignettes/monocle-vignette-knitr.tex:591: memeory ==> memory
data/r-bioc-monocle-2.18.0/vignettes/monocle-vignette-knitr.tex:692: acceptible ==> acceptable
data/r-bioc-monocle-2.18.0/vignettes/monocle-vignette-knitr.tex:694: frome ==> from
data/r-bioc-monocle-2.18.0/vignettes/monocle-vignette-knitr.tex:732: expresion ==> expression
data/r-bioc-monocle-2.18.0/vignettes/monocle-vignette-knitr.tex:1106: thats ==> that's
data/r-bioc-monocle-2.18.0/vignettes/monocle-vignette-knitr.tex:1168: througout ==> throughout
data/r-bioc-monocle-2.18.0/vignettes/monocle-vignette-knitr.tex:1723: convinient ==> convenient
data/r-bioc-monocle-2.18.0/vignettes/monocle-vignette-knitr.tex:1900: Occassionally ==> Occasionally
data/r-bioc-monocle-2.18.0/vignettes/monocle-vignette-knitr.tex:2107: signficant ==> significant
data/r-bioc-monocle-2.18.0/vignettes/monocle-vignette-knitr.tex:2145: stragegy ==> strategy
data/r-bioc-monocle-2.18.0/vignettes/monocle-vignette-knitr.tex:2150: Appling ==> Applying, appalling
data/r-bioc-monocle-2.18.0/vignettes/monocle-vignette-knitr.tex:2174: explictly ==> explicitly
data/r-bioc-monocle-2.18.0/vignettes/monocle-vignette-knitr.tex:2263: algoritm ==> algorithm
data/r-bioc-monocle-2.18.0/vignettes/monocle-vignette-knitr.tex:2318: stragegy ==> strategy
data/r-bioc-monocle-2.18.0/vignettes/monocle-vignette-knitr.tex:2376: implmentation ==> implementation
data/r-bioc-monocle-2.18.0/vignettes/monocle-vignette.Rnw:22: Massachussetts ==> Massachusetts
data/r-bioc-monocle-2.18.0/vignettes/monocle_alg.bib:134: inthe ==> in the