data/r-bioc-mutationalpatterns-3.0.1+dfsg/R/bin_mutation_density.R:41: usefull ==> useful
data/r-bioc-mutationalpatterns-3.0.1+dfsg/R/binomial_test.R:39: asteriks ==> asterisk, asterisks
data/r-bioc-mutationalpatterns-3.0.1+dfsg/R/calculate_lesion_segretation.R:15: assymetries ==> asymmetries
data/r-bioc-mutationalpatterns-3.0.1+dfsg/R/calculate_lesion_segretation.R:35: distibuted ==> distributed
data/r-bioc-mutationalpatterns-3.0.1+dfsg/R/calculate_lesion_segretation.R:163: singe ==> single
data/r-bioc-mutationalpatterns-3.0.1+dfsg/R/context_potential_damage_analysis.R:79: usefull ==> useful
data/r-bioc-mutationalpatterns-3.0.1+dfsg/R/context_potential_damage_analysis.R:221: Supress ==> Suppress
data/r-bioc-mutationalpatterns-3.0.1+dfsg/R/context_potential_damage_analysis.R:409: occuring ==> occurring
data/r-bioc-mutationalpatterns-3.0.1+dfsg/R/convert_sigs_to_ref.R:36: convertion ==> conversion
data/r-bioc-mutationalpatterns-3.0.1+dfsg/R/extract_signatures.R:17: mathmatically ==> mathematically
data/r-bioc-mutationalpatterns-3.0.1+dfsg/R/genomic_distribution.R:56: conver ==> convert
data/r-bioc-mutationalpatterns-3.0.1+dfsg/R/get_indel_context.R:106: categorie ==> category, categories
data/r-bioc-mutationalpatterns-3.0.1+dfsg/R/get_indel_context.R:386: lenght ==> length
data/r-bioc-mutationalpatterns-3.0.1+dfsg/R/get_indel_context.R:447: Retreive ==> Retrieve
data/r-bioc-mutationalpatterns-3.0.1+dfsg/R/get_indel_context.R:450: retreives ==> retrieves
data/r-bioc-mutationalpatterns-3.0.1+dfsg/R/get_indel_context.R:452: retreiving ==> retrieving
data/r-bioc-mutationalpatterns-3.0.1+dfsg/R/get_indel_context.R:471: lenght ==> length
data/r-bioc-mutationalpatterns-3.0.1+dfsg/R/get_known_signatures.R:4: retreive ==> retrieve
data/r-bioc-mutationalpatterns-3.0.1+dfsg/R/get_known_signatures.R:5: retreive ==> retrieve
data/r-bioc-mutationalpatterns-3.0.1+dfsg/R/get_known_signatures.R:6: retreived ==> retrieved
data/r-bioc-mutationalpatterns-3.0.1+dfsg/R/get_mut_type.R:107: eachother ==> each other
data/r-bioc-mutationalpatterns-3.0.1+dfsg/R/get_mut_type.R:110: untill ==> until
data/r-bioc-mutationalpatterns-3.0.1+dfsg/R/get_mut_type.R:200: usefull ==> useful
data/r-bioc-mutationalpatterns-3.0.1+dfsg/R/get_ref_alt.R:3: Retreives ==> Retrieves
data/r-bioc-mutationalpatterns-3.0.1+dfsg/R/get_ref_alt.R:28: Retreives ==> Retrieves
data/r-bioc-mutationalpatterns-3.0.1+dfsg/R/get_sig_start.R:31: cant ==> can't
data/r-bioc-mutationalpatterns-3.0.1+dfsg/R/lengthen_mut_matrix.R:11: ect ==> etc
data/r-bioc-mutationalpatterns-3.0.1+dfsg/R/mut_matrix.R:26: usefull ==> useful
data/r-bioc-mutationalpatterns-3.0.1+dfsg/R/plot_compare_dbs.R:42: eachother ==> each other
data/r-bioc-mutationalpatterns-3.0.1+dfsg/R/plot_compare_indels.R:41: eachother ==> each other
data/r-bioc-mutationalpatterns-3.0.1+dfsg/R/plot_compare_mbs.R:32: eachother ==> each other
data/r-bioc-mutationalpatterns-3.0.1+dfsg/R/plot_compare_profiles.R:44: eachother ==> each other
data/r-bioc-mutationalpatterns-3.0.1+dfsg/R/plot_contribution_heatmap.R:108: hierachical ==> hierarchical
data/r-bioc-mutationalpatterns-3.0.1+dfsg/R/plot_contribution_heatmap.R:144: hierachical ==> hierarchical
data/r-bioc-mutationalpatterns-3.0.1+dfsg/R/plot_cosine_heatmap.R:54: eachother ==> each other
data/r-bioc-mutationalpatterns-3.0.1+dfsg/R/plot_cosine_heatmap.R:107: hierachical ==> hierarchical
data/r-bioc-mutationalpatterns-3.0.1+dfsg/R/plot_cosine_heatmap.R:143: hierachical ==> hierarchical
data/r-bioc-mutationalpatterns-3.0.1+dfsg/R/plot_profile_heatmap.R:4: usefull ==> useful
data/r-bioc-mutationalpatterns-3.0.1+dfsg/R/plot_profile_heatmap.R:84: seperately ==> separately
data/r-bioc-mutationalpatterns-3.0.1+dfsg/R/plot_river.R:4: usefull ==> useful
data/r-bioc-mutationalpatterns-3.0.1+dfsg/R/plot_signature_strand_bias.R:29: Creat ==> Create
data/r-bioc-mutationalpatterns-3.0.1+dfsg/R/plot_spectrum_region.R:14: usefull ==> useful
data/r-bioc-mutationalpatterns-3.0.1+dfsg/R/plot_spectrum_region.R:17: usefull ==> useful
data/r-bioc-mutationalpatterns-3.0.1+dfsg/R/plot_spectrum_region.R:19: usefull ==> useful
data/r-bioc-mutationalpatterns-3.0.1+dfsg/R/read_vcfs_as_granges.R:64: compatability ==> compatibility
data/r-bioc-mutationalpatterns-3.0.1+dfsg/R/rename_nmf_signatures.R:10: usefull ==> useful
data/r-bioc-mutationalpatterns-3.0.1+dfsg/R/rename_nmf_signatures.R:17: whith ==> with
data/r-bioc-mutationalpatterns-3.0.1+dfsg/R/signature_potential_damage_analysis.R:14: substracting ==> subtracting
data/r-bioc-mutationalpatterns-3.0.1+dfsg/inst/NEWS:129: case-insesitive ==> case-insensitive
data/r-bioc-mutationalpatterns-3.0.1+dfsg/inst/NEWS:218: unneccesarily ==> unnecessarily
data/r-bioc-mutationalpatterns-3.0.1+dfsg/inst/doc/Introduction_to_MutationalPatterns.Rmd:156: usefull ==> useful
data/r-bioc-mutationalpatterns-3.0.1+dfsg/inst/doc/Introduction_to_MutationalPatterns.Rmd:326: usefull ==> useful
data/r-bioc-mutationalpatterns-3.0.1+dfsg/inst/doc/Introduction_to_MutationalPatterns.Rmd:426: usefull ==> useful
data/r-bioc-mutationalpatterns-3.0.1+dfsg/inst/doc/Introduction_to_MutationalPatterns.Rmd:444: usefull ==> useful
data/r-bioc-mutationalpatterns-3.0.1+dfsg/inst/doc/Introduction_to_MutationalPatterns.Rmd:544: usefull ==> useful
data/r-bioc-mutationalpatterns-3.0.1+dfsg/inst/doc/Introduction_to_MutationalPatterns.Rmd:942: usefull ==> useful
data/r-bioc-mutationalpatterns-3.0.1+dfsg/inst/doc/Introduction_to_MutationalPatterns.Rmd:968: usefull ==> useful
data/r-bioc-mutationalpatterns-3.0.1+dfsg/inst/doc/Introduction_to_MutationalPatterns.Rmd:1068: Asteriks ==> Asterisk, asterisks
data/r-bioc-mutationalpatterns-3.0.1+dfsg/inst/doc/Introduction_to_MutationalPatterns.Rmd:1080: asteriks ==> asterisk, asterisks
data/r-bioc-mutationalpatterns-3.0.1+dfsg/inst/doc/Introduction_to_MutationalPatterns.Rmd:1081: asteriks ==> asterisk, asterisks
data/r-bioc-mutationalpatterns-3.0.1+dfsg/inst/doc/Introduction_to_MutationalPatterns.Rmd:1349: Asteriks ==> Asterisk, asterisks
data/r-bioc-mutationalpatterns-3.0.1+dfsg/inst/doc/Introduction_to_MutationalPatterns.Rmd:1446: usefull ==> useful
data/r-bioc-mutationalpatterns-3.0.1+dfsg/inst/doc/Introduction_to_MutationalPatterns.Rmd:1511: assymetries ==> asymmetries
data/r-bioc-mutationalpatterns-3.0.1+dfsg/inst/doc/Introduction_to_MutationalPatterns.Rmd:1513: usefull ==> useful
data/r-bioc-mutationalpatterns-3.0.1+dfsg/inst/doc/Introduction_to_MutationalPatterns.Rmd:1519: usefull ==> useful
data/r-bioc-mutationalpatterns-3.0.1+dfsg/inst/doc/Introduction_to_MutationalPatterns.Rmd:1542: assymetries ==> asymmetries
data/r-bioc-mutationalpatterns-3.0.1+dfsg/inst/scripts/create_example_regulatory_regions.R:38: conver ==> convert
data/r-bioc-mutationalpatterns-3.0.1+dfsg/inst/scripts/create_example_vcfs.R:6: usefull ==> useful
data/r-bioc-mutationalpatterns-3.0.1+dfsg/man/MutationalPatterns-package.Rd:22: publically ==> publicly
data/r-bioc-mutationalpatterns-3.0.1+dfsg/man/bin_mutation_density.Rd:49: usefull ==> useful
data/r-bioc-mutationalpatterns-3.0.1+dfsg/man/calculate_lesion_segregation.Rd:23: distibuted ==> distributed
data/r-bioc-mutationalpatterns-3.0.1+dfsg/man/calculate_lesion_segregation.Rd:52: assymetries ==> asymmetries
data/r-bioc-mutationalpatterns-3.0.1+dfsg/man/context_potential_damage_analysis.Rd:98: usefull ==> useful
data/r-bioc-mutationalpatterns-3.0.1+dfsg/man/extract_signatures.Rd:30: mathmatically ==> mathematically
data/r-bioc-mutationalpatterns-3.0.1+dfsg/man/genomic_distribution.Rd:67: conver ==> convert
data/r-bioc-mutationalpatterns-3.0.1+dfsg/man/get_known_signatures.Rd:46: retreive ==> retrieve
data/r-bioc-mutationalpatterns-3.0.1+dfsg/man/get_known_signatures.Rd:47: retreive ==> retrieve
data/r-bioc-mutationalpatterns-3.0.1+dfsg/man/get_known_signatures.Rd:48: retreived ==> retrieved
data/r-bioc-mutationalpatterns-3.0.1+dfsg/man/lengthen_mut_matrix.Rd:24: ect ==> etc
data/r-bioc-mutationalpatterns-3.0.1+dfsg/man/mut_matrix.Rd:39: usefull ==> useful
data/r-bioc-mutationalpatterns-3.0.1+dfsg/man/plot_compare_dbs.Rd:56: eachother ==> each other
data/r-bioc-mutationalpatterns-3.0.1+dfsg/man/plot_compare_indels.Rd:56: eachother ==> each other
data/r-bioc-mutationalpatterns-3.0.1+dfsg/man/plot_compare_mbs.Rd:47: eachother ==> each other
data/r-bioc-mutationalpatterns-3.0.1+dfsg/man/plot_compare_profiles.Rd:66: eachother ==> each other
data/r-bioc-mutationalpatterns-3.0.1+dfsg/man/plot_cosine_heatmap.Rd:74: eachother ==> each other
data/r-bioc-mutationalpatterns-3.0.1+dfsg/man/plot_profile_heatmap.Rd:24: usefull ==> useful
data/r-bioc-mutationalpatterns-3.0.1+dfsg/man/plot_river.Rd:19: usefull ==> useful
data/r-bioc-mutationalpatterns-3.0.1+dfsg/man/plot_signature_strand_bias.Rd:36: Creat ==> Create
data/r-bioc-mutationalpatterns-3.0.1+dfsg/man/plot_spectrum_region.Rd:61: usefull ==> useful
data/r-bioc-mutationalpatterns-3.0.1+dfsg/man/plot_spectrum_region.Rd:64: usefull ==> useful
data/r-bioc-mutationalpatterns-3.0.1+dfsg/man/plot_spectrum_region.Rd:66: usefull ==> useful
data/r-bioc-mutationalpatterns-3.0.1+dfsg/man/read_vcfs_as_granges.Rd:83: compatability ==> compatibility
data/r-bioc-mutationalpatterns-3.0.1+dfsg/man/rename_nmf_signatures.Rd:19: whith ==> with
data/r-bioc-mutationalpatterns-3.0.1+dfsg/man/rename_nmf_signatures.Rd:29: usefull ==> useful
data/r-bioc-mutationalpatterns-3.0.1+dfsg/man/signature_potential_damage_analysis.Rd:33: substracting ==> subtracting
data/r-bioc-mutationalpatterns-3.0.1+dfsg/tests/testthat/test-mut_type_occurrences.R:15: occurence ==> occurrence
data/r-bioc-mutationalpatterns-3.0.1+dfsg/tests/testthat/test-mut_type_occurrences.R:18: occurence ==> occurrence
data/r-bioc-mutationalpatterns-3.0.1+dfsg/tests/testthat/test-mut_type_occurrences.R:27: Outpus ==> Output, outputs
data/r-bioc-mutationalpatterns-3.0.1+dfsg/tests/testthat/test-plot_cosine_heatmap.R:31: eachother ==> each other
data/r-bioc-mutationalpatterns-3.0.1+dfsg/vignettes/Introduction_to_MutationalPatterns.Rmd:156: usefull ==> useful
data/r-bioc-mutationalpatterns-3.0.1+dfsg/vignettes/Introduction_to_MutationalPatterns.Rmd:326: usefull ==> useful
data/r-bioc-mutationalpatterns-3.0.1+dfsg/vignettes/Introduction_to_MutationalPatterns.Rmd:426: usefull ==> useful
data/r-bioc-mutationalpatterns-3.0.1+dfsg/vignettes/Introduction_to_MutationalPatterns.Rmd:444: usefull ==> useful
data/r-bioc-mutationalpatterns-3.0.1+dfsg/vignettes/Introduction_to_MutationalPatterns.Rmd:544: usefull ==> useful
data/r-bioc-mutationalpatterns-3.0.1+dfsg/vignettes/Introduction_to_MutationalPatterns.Rmd:942: usefull ==> useful
data/r-bioc-mutationalpatterns-3.0.1+dfsg/vignettes/Introduction_to_MutationalPatterns.Rmd:968: usefull ==> useful
data/r-bioc-mutationalpatterns-3.0.1+dfsg/vignettes/Introduction_to_MutationalPatterns.Rmd:1068: Asteriks ==> Asterisk, asterisks
data/r-bioc-mutationalpatterns-3.0.1+dfsg/vignettes/Introduction_to_MutationalPatterns.Rmd:1080: asteriks ==> asterisk, asterisks
data/r-bioc-mutationalpatterns-3.0.1+dfsg/vignettes/Introduction_to_MutationalPatterns.Rmd:1081: asteriks ==> asterisk, asterisks
data/r-bioc-mutationalpatterns-3.0.1+dfsg/vignettes/Introduction_to_MutationalPatterns.Rmd:1349: Asteriks ==> Asterisk, asterisks
data/r-bioc-mutationalpatterns-3.0.1+dfsg/vignettes/Introduction_to_MutationalPatterns.Rmd:1446: usefull ==> useful
data/r-bioc-mutationalpatterns-3.0.1+dfsg/vignettes/Introduction_to_MutationalPatterns.Rmd:1511: assymetries ==> asymmetries
data/r-bioc-mutationalpatterns-3.0.1+dfsg/vignettes/Introduction_to_MutationalPatterns.Rmd:1513: usefull ==> useful
data/r-bioc-mutationalpatterns-3.0.1+dfsg/vignettes/Introduction_to_MutationalPatterns.Rmd:1519: usefull ==> useful
data/r-bioc-mutationalpatterns-3.0.1+dfsg/vignettes/Introduction_to_MutationalPatterns.Rmd:1542: assymetries ==> asymmetries
data/r-bioc-mutationalpatterns-3.0.1+dfsg/vignettes/references.bib:68: Ake ==> Ache
data/r-bioc-mutationalpatterns-3.0.1+dfsg/vignettes/references.bib:187: Teh ==> The
data/r-bioc-mutationalpatterns-3.0.1+dfsg/vignettes/references.bib:227: Pich ==> Pitch
data/r-bioc-mutationalpatterns-3.0.1+dfsg/vignettes/references.bib:227: Pich ==> Pitch