data/r-bioc-rhtslib-1.22.0+dfsg/inst/doc/Rhtslib.Rmd:123: mimicks ==> mimics
data/r-bioc-rhtslib-1.22.0+dfsg/inst/include/bam.h:63: referene ==> reference
data/r-bioc-rhtslib-1.22.0+dfsg/inst/include/bam.h:80: defautl ==> default
data/r-bioc-rhtslib-1.22.0+dfsg/inst/include/bam_cat.c:63: loosly ==> loosely
data/r-bioc-rhtslib-1.22.0+dfsg/inst/include/bam_sort.c:2030: approxiate ==> approximate
data/r-bioc-rhtslib-1.22.0+dfsg/inst/include/sam.h:68: outputing ==> outputting
data/r-bioc-rhtslib-1.22.0+dfsg/src/htslib-1.7/NEWS:187: apparantly ==> apparently
data/r-bioc-rhtslib-1.22.0+dfsg/src/htslib-1.7/NEWS:191: noticable ==> noticeable
data/r-bioc-rhtslib-1.22.0+dfsg/src/htslib-1.7/NEWS:286: enviroment ==> environment
data/r-bioc-rhtslib-1.22.0+dfsg/src/htslib-1.7/NEWS:307: occurences ==> occurrences
data/r-bioc-rhtslib-1.22.0+dfsg/src/htslib-1.7/bgzf.c:52: speciallized ==> specialised, specialized
data/r-bioc-rhtslib-1.22.0+dfsg/src/htslib-1.7/bgzf.c:181: non-useful ==> useless
data/r-bioc-rhtslib-1.22.0+dfsg/src/htslib-1.7/bgzf.c:303: fpr ==> for, far, fps
data/r-bioc-rhtslib-1.22.0+dfsg/src/htslib-1.7/bgzf.c:304: fpr ==> for, far, fps
data/r-bioc-rhtslib-1.22.0+dfsg/src/htslib-1.7/bgzf.c:305: fpr ==> for, far, fps
data/r-bioc-rhtslib-1.22.0+dfsg/src/htslib-1.7/bgzf.c:306: fpr ==> for, far, fps
data/r-bioc-rhtslib-1.22.0+dfsg/src/htslib-1.7/bgzf.c:307: fpr ==> for, far, fps
data/r-bioc-rhtslib-1.22.0+dfsg/src/htslib-1.7/bgzf.c:326: fpr ==> for, far, fps
data/r-bioc-rhtslib-1.22.0+dfsg/src/htslib-1.7/bgzf.c:327: fpr ==> for, far, fps
data/r-bioc-rhtslib-1.22.0+dfsg/src/htslib-1.7/bgzf.c:328: fpr ==> for, far, fps
data/r-bioc-rhtslib-1.22.0+dfsg/src/htslib-1.7/bgzf.c:329: fpr ==> for, far, fps
data/r-bioc-rhtslib-1.22.0+dfsg/src/htslib-1.7/bgzf.c:330: fpr ==> for, far, fps
data/r-bioc-rhtslib-1.22.0+dfsg/src/htslib-1.7/bgzf.c:981: signficant ==> significant
data/r-bioc-rhtslib-1.22.0+dfsg/src/htslib-1.7/configure:4112: creat ==> create
data/r-bioc-rhtslib-1.22.0+dfsg/src/htslib-1.7/faidx.5:47: TE ==> THE, BE, WE
data/r-bioc-rhtslib-1.22.0+dfsg/src/htslib-1.7/faidx.5:130: TE ==> THE, BE, WE
data/r-bioc-rhtslib-1.22.0+dfsg/src/htslib-1.7/faidx.5:140: TE ==> THE, BE, WE
data/r-bioc-rhtslib-1.22.0+dfsg/src/htslib-1.7/hts.c:2335: assing ==> assign
data/r-bioc-rhtslib-1.22.0+dfsg/src/htslib-1.7/knetfile.c:88: addapted ==> adapted
data/r-bioc-rhtslib-1.22.0+dfsg/src/htslib-1.7/knetfile.c:147: modfied ==> modified
data/r-bioc-rhtslib-1.22.0+dfsg/src/htslib-1.7/regidx.c:41: alloced ==> allocated
data/r-bioc-rhtslib-1.22.0+dfsg/src/htslib-1.7/regidx.c:50: alloced ==> allocated
data/r-bioc-rhtslib-1.22.0+dfsg/src/htslib-1.7/sam.5:40: POSistion ==> position
data/r-bioc-rhtslib-1.22.0+dfsg/src/htslib-1.7/sam.5:45: TE ==> THE, BE, WE
data/r-bioc-rhtslib-1.22.0+dfsg/src/htslib-1.7/sam.5:62: TE ==> THE, BE, WE
data/r-bioc-rhtslib-1.22.0+dfsg/src/htslib-1.7/sam.c:631: compability ==> compatibility
data/r-bioc-rhtslib-1.22.0+dfsg/src/htslib-1.7/sam.c:2093: coordiante ==> coordinate
data/r-bioc-rhtslib-1.22.0+dfsg/src/htslib-1.7/synced_bcf_reader.c:1011: als ==> also
data/r-bioc-rhtslib-1.22.0+dfsg/src/htslib-1.7/synced_bcf_reader.c:1011: als ==> also
data/r-bioc-rhtslib-1.22.0+dfsg/src/htslib-1.7/synced_bcf_reader.c:1165: als ==> also
data/r-bioc-rhtslib-1.22.0+dfsg/src/htslib-1.7/synced_bcf_reader.c:1173: als ==> also
data/r-bioc-rhtslib-1.22.0+dfsg/src/htslib-1.7/synced_bcf_reader.c:1175: als ==> also
data/r-bioc-rhtslib-1.22.0+dfsg/src/htslib-1.7/synced_bcf_reader.c:1175: als ==> also
data/r-bioc-rhtslib-1.22.0+dfsg/src/htslib-1.7/synced_bcf_reader.c:1180: als ==> also
data/r-bioc-rhtslib-1.22.0+dfsg/src/htslib-1.7/synced_bcf_reader.c:1182: als ==> also
data/r-bioc-rhtslib-1.22.0+dfsg/src/htslib-1.7/synced_bcf_reader.c:1182: als ==> also
data/r-bioc-rhtslib-1.22.0+dfsg/src/htslib-1.7/tabix.c:314: remainig ==> remaining
data/r-bioc-rhtslib-1.22.0+dfsg/src/htslib-1.7/textutils_internal.h:55: writen ==> written
data/r-bioc-rhtslib-1.22.0+dfsg/src/htslib-1.7/textutils_internal.h:73: funtion ==> function
data/r-bioc-rhtslib-1.22.0+dfsg/src/htslib-1.7/textutils_internal.h:90: funtion ==> function
data/r-bioc-rhtslib-1.22.0+dfsg/src/htslib-1.7/thread_pool.c:206: incase ==> in case
data/r-bioc-rhtslib-1.22.0+dfsg/src/htslib-1.7/thread_pool.c:557: incase ==> in case
data/r-bioc-rhtslib-1.22.0+dfsg/src/htslib-1.7/thread_pool.c:831: incase ==> in case
data/r-bioc-rhtslib-1.22.0+dfsg/src/htslib-1.7/thread_pool.c:1197: inbetween ==> between, in between
data/r-bioc-rhtslib-1.22.0+dfsg/src/htslib-1.7/vcf.5:44: TE ==> THE, BE, WE
data/r-bioc-rhtslib-1.22.0+dfsg/src/htslib-1.7/vcf.c:993: als ==> also
data/r-bioc-rhtslib-1.22.0+dfsg/src/htslib-1.7/vcf.c:1001: als ==> also
data/r-bioc-rhtslib-1.22.0+dfsg/src/htslib-1.7/vcf.c:2323: te ==> the, be, we
data/r-bioc-rhtslib-1.22.0+dfsg/src/htslib-1.7/vcf.c:2341: te ==> the, be, we
data/r-bioc-rhtslib-1.22.0+dfsg/src/htslib-1.7/vcf.c:2342: te ==> the, be, we
data/r-bioc-rhtslib-1.22.0+dfsg/src/htslib-1.7/vcf.c:2345: te ==> the, be, we
data/r-bioc-rhtslib-1.22.0+dfsg/src/htslib-1.7/vcf.c:2345: te ==> the, be, we
data/r-bioc-rhtslib-1.22.0+dfsg/src/htslib-1.7/vcf.c:2345: te ==> the, be, we
data/r-bioc-rhtslib-1.22.0+dfsg/src/htslib-1.7/vcf.c:2347: te ==> the, be, we
data/r-bioc-rhtslib-1.22.0+dfsg/src/htslib-1.7/vcf.c:2355: te ==> the, be, we
data/r-bioc-rhtslib-1.22.0+dfsg/src/htslib-1.7/vcf.c:2356: te ==> the, be, we
data/r-bioc-rhtslib-1.22.0+dfsg/src/htslib-1.7/vcf.c:2359: te ==> the, be, we
data/r-bioc-rhtslib-1.22.0+dfsg/src/htslib-1.7/vcf.c:2359: te ==> the, be, we
data/r-bioc-rhtslib-1.22.0+dfsg/src/htslib-1.7/vcf.c:2359: te ==> the, be, we
data/r-bioc-rhtslib-1.22.0+dfsg/src/htslib-1.7/vcf.c:2361: te ==> the, be, we
data/r-bioc-rhtslib-1.22.0+dfsg/src/htslib-1.7/vcf.c:2450: als ==> also
data/r-bioc-rhtslib-1.22.0+dfsg/src/htslib-1.7/vcf.c:2452: als ==> also
data/r-bioc-rhtslib-1.22.0+dfsg/src/htslib-1.7/vcf.c:2461: als ==> also
data/r-bioc-rhtslib-1.22.0+dfsg/src/htslib-1.7/vcf.c:2464: als ==> also
data/r-bioc-rhtslib-1.22.0+dfsg/src/htslib-1.7/vcf.c:3468: accomodate ==> accommodate
data/r-bioc-rhtslib-1.22.0+dfsg/src/htslib-1.7/vcf.c:3560: als ==> also
data/r-bioc-rhtslib-1.22.0+dfsg/src/htslib-1.7/vcf.c:3560: als ==> also
data/r-bioc-rhtslib-1.22.0+dfsg/src/htslib-1.7/vcf.c:3564: als ==> also
data/r-bioc-rhtslib-1.22.0+dfsg/src/htslib-1.7/vcf.c:3565: als ==> also
data/r-bioc-rhtslib-1.22.0+dfsg/src/htslib-1.7/vcf.c:3565: als ==> also
data/r-bioc-rhtslib-1.22.0+dfsg/src/htslib-1.7/vcf.c:3566: als ==> also
data/r-bioc-rhtslib-1.22.0+dfsg/src/htslib-1.7/vcf.c:3581: als ==> also
data/r-bioc-rhtslib-1.22.0+dfsg/src/htslib-1.7/vcf.c:3584: als ==> also
data/r-bioc-rhtslib-1.22.0+dfsg/src/htslib-1.7/vcf.c:3584: als ==> also
data/r-bioc-rhtslib-1.22.0+dfsg/src/htslib-1.7/vcf.c:3588: als ==> also
data/r-bioc-rhtslib-1.22.0+dfsg/src/htslib-1.7/vcf.c:3591: als ==> also
data/r-bioc-rhtslib-1.22.0+dfsg/src/htslib-1.7/vcf.c:3598: als ==> also
data/r-bioc-rhtslib-1.22.0+dfsg/src/htslib-1.7/vcf.c:3606: als ==> also
data/r-bioc-rhtslib-1.22.0+dfsg/src/htslib-1.7/vcf.c:3608: als ==> also
data/r-bioc-rhtslib-1.22.0+dfsg/src/htslib-1.7/vcf.c:3611: als ==> also
data/r-bioc-rhtslib-1.22.0+dfsg/src/htslib-1.7/cram/cram_decode.c:1536: BA ==> BY, BE
data/r-bioc-rhtslib-1.22.0+dfsg/src/htslib-1.7/cram/cram_decode.c:1629: BA ==> BY, BE
data/r-bioc-rhtslib-1.22.0+dfsg/src/htslib-1.7/cram/cram_decode.c:1676: BA ==> BY, BE
data/r-bioc-rhtslib-1.22.0+dfsg/src/htslib-1.7/cram/cram_decode.c:2164: incase ==> in case
data/r-bioc-rhtslib-1.22.0+dfsg/src/htslib-1.7/cram/cram_encode.c:371: BA ==> BY, BE
data/r-bioc-rhtslib-1.22.0+dfsg/src/htslib-1.7/cram/cram_encode.c:1520: BA ==> BY, BE
data/r-bioc-rhtslib-1.22.0+dfsg/src/htslib-1.7/cram/cram_encode.c:2433: occurence ==> occurrence
data/r-bioc-rhtslib-1.22.0+dfsg/src/htslib-1.7/cram/cram_encode.c:2837: BA ==> BY, BE
data/r-bioc-rhtslib-1.22.0+dfsg/src/htslib-1.7/cram/cram_external.c:281: incase ==> in case
data/r-bioc-rhtslib-1.22.0+dfsg/src/htslib-1.7/cram/cram_index.h:51: sucess ==> success
data/r-bioc-rhtslib-1.22.0+dfsg/src/htslib-1.7/cram/cram_io.c:599: strat ==> start, strata
data/r-bioc-rhtslib-1.22.0+dfsg/src/htslib-1.7/cram/cram_io.c:623: strat ==> start, strata
data/r-bioc-rhtslib-1.22.0+dfsg/src/htslib-1.7/cram/cram_io.c:665: reenabled ==> re-enabled
data/r-bioc-rhtslib-1.22.0+dfsg/src/htslib-1.7/cram/cram_io.c:971: incase ==> in case
data/r-bioc-rhtslib-1.22.0+dfsg/src/htslib-1.7/cram/cram_io.c:1008: incase ==> in case
data/r-bioc-rhtslib-1.22.0+dfsg/src/htslib-1.7/cram/cram_io.c:1023: strat ==> start, strata
data/r-bioc-rhtslib-1.22.0+dfsg/src/htslib-1.7/cram/cram_io.c:1026: strat ==> start, strata
data/r-bioc-rhtslib-1.22.0+dfsg/src/htslib-1.7/cram/cram_io.c:1098: strat ==> start, strata
data/r-bioc-rhtslib-1.22.0+dfsg/src/htslib-1.7/cram/cram_io.c:1313: strat ==> start, strata
data/r-bioc-rhtslib-1.22.0+dfsg/src/htslib-1.7/cram/cram_io.c:1316: strat ==> start, strata
data/r-bioc-rhtslib-1.22.0+dfsg/src/htslib-1.7/cram/cram_io.c:1392: strat ==> start, strata
data/r-bioc-rhtslib-1.22.0+dfsg/src/htslib-1.7/cram/cram_io.c:1392: strat ==> start, strata
data/r-bioc-rhtslib-1.22.0+dfsg/src/htslib-1.7/cram/cram_io.c:1398: strat ==> start, strata
data/r-bioc-rhtslib-1.22.0+dfsg/src/htslib-1.7/cram/cram_io.c:1438: strat ==> start, strata
data/r-bioc-rhtslib-1.22.0+dfsg/src/htslib-1.7/cram/cram_io.c:1613: incase ==> in case
data/r-bioc-rhtslib-1.22.0+dfsg/src/htslib-1.7/cram/cram_io.c:2017: sucess ==> success
data/r-bioc-rhtslib-1.22.0+dfsg/src/htslib-1.7/cram/cram_io.c:2073: incase ==> in case
data/r-bioc-rhtslib-1.22.0+dfsg/src/htslib-1.7/cram/cram_io.c:2160: thrid ==> third
data/r-bioc-rhtslib-1.22.0+dfsg/src/htslib-1.7/cram/cram_io.c:2176: thrid ==> third
data/r-bioc-rhtslib-1.22.0+dfsg/src/htslib-1.7/cram/cram_io.c:2178: thrid ==> third
data/r-bioc-rhtslib-1.22.0+dfsg/src/htslib-1.7/cram/cram_structs.h:65: existance ==> existence
data/r-bioc-rhtslib-1.22.0+dfsg/src/htslib-1.7/cram/cram_structs.h:232: strat ==> start, strata
data/r-bioc-rhtslib-1.22.0+dfsg/src/htslib-1.7/cram/cram_structs.h:727: substituion ==> substitution
data/r-bioc-rhtslib-1.22.0+dfsg/src/htslib-1.7/cram/mFILE.c:131: alloced ==> allocated
data/r-bioc-rhtslib-1.22.0+dfsg/src/htslib-1.7/cram/mFILE.c:203: alloced ==> allocated
data/r-bioc-rhtslib-1.22.0+dfsg/src/htslib-1.7/cram/mFILE.c:221: alloced ==> allocated
data/r-bioc-rhtslib-1.22.0+dfsg/src/htslib-1.7/cram/mFILE.c:252: requring ==> requiring
data/r-bioc-rhtslib-1.22.0+dfsg/src/htslib-1.7/cram/mFILE.c:301: alloced ==> allocated
data/r-bioc-rhtslib-1.22.0+dfsg/src/htslib-1.7/cram/mFILE.c:356: Mmaped ==> Mapped
data/r-bioc-rhtslib-1.22.0+dfsg/src/htslib-1.7/cram/mFILE.c:374: mmaped ==> mapped
data/r-bioc-rhtslib-1.22.0+dfsg/src/htslib-1.7/cram/mFILE.c:412: mmaped ==> mapped
data/r-bioc-rhtslib-1.22.0+dfsg/src/htslib-1.7/cram/mFILE.c:523: alloced ==> allocated
data/r-bioc-rhtslib-1.22.0+dfsg/src/htslib-1.7/cram/mFILE.c:524: alloced ==> allocated
data/r-bioc-rhtslib-1.22.0+dfsg/src/htslib-1.7/cram/mFILE.c:524: alloced ==> allocated
data/r-bioc-rhtslib-1.22.0+dfsg/src/htslib-1.7/cram/mFILE.c:527: alloced ==> allocated
data/r-bioc-rhtslib-1.22.0+dfsg/src/htslib-1.7/cram/mFILE.h:43: alloced ==> allocated
data/r-bioc-rhtslib-1.22.0+dfsg/src/htslib-1.7/cram/os.h:163: incase ==> in case
data/r-bioc-rhtslib-1.22.0+dfsg/src/htslib-1.7/cram/rANS_byte.h:4: ANS ==> AND
data/r-bioc-rhtslib-1.22.0+dfsg/src/htslib-1.7/cram/sam_header.c:1097: incase ==> in case
data/r-bioc-rhtslib-1.22.0+dfsg/src/htslib-1.7/cram/sam_header.c:1105: sucess ==> success
data/r-bioc-rhtslib-1.22.0+dfsg/src/htslib-1.7/cram/sam_header.h:415: incase ==> in case
data/r-bioc-rhtslib-1.22.0+dfsg/src/htslib-1.7/cram/sam_header.h:420: sucess ==> success
data/r-bioc-rhtslib-1.22.0+dfsg/src/htslib-1.7/cram/string_alloc.c:51: Tha ==> Than, that, the
data/r-bioc-rhtslib-1.22.0+dfsg/src/htslib-1.7/htslib/bgzf.h:154: writen ==> written
data/r-bioc-rhtslib-1.22.0+dfsg/src/htslib-1.7/htslib/bgzf.h:274: delimitor ==> delimiter
data/r-bioc-rhtslib-1.22.0+dfsg/src/htslib-1.7/htslib/cram.h:167: incase ==> in case
data/r-bioc-rhtslib-1.22.0+dfsg/src/htslib-1.7/htslib/cram.h:422: occured ==> occurred
data/r-bioc-rhtslib-1.22.0+dfsg/src/htslib-1.7/htslib/hts.h:743: Intialises ==> Initialises
data/r-bioc-rhtslib-1.22.0+dfsg/src/htslib-1.7/htslib/khash.h:579: conenient ==> convenient
data/r-bioc-rhtslib-1.22.0+dfsg/src/htslib-1.7/htslib/kstring.h:231: failue ==> failure
data/r-bioc-rhtslib-1.22.0+dfsg/src/htslib-1.7/htslib/synced_bcf_reader.h:68: paralel ==> parallel
data/r-bioc-rhtslib-1.22.0+dfsg/src/htslib-1.7/htslib/synced_bcf_reader.h:111: als ==> also
data/r-bioc-rhtslib-1.22.0+dfsg/src/htslib-1.7/htslib/synced_bcf_reader.h:275: intepreted ==> interpreted
data/r-bioc-rhtslib-1.22.0+dfsg/src/htslib-1.7/htslib/synced_bcf_reader.h:279: als ==> also
data/r-bioc-rhtslib-1.22.0+dfsg/src/htslib-1.7/htslib/synced_bcf_reader.h:324: succes ==> success
data/r-bioc-rhtslib-1.22.0+dfsg/src/htslib-1.7/htslib/vcf.h:72: dictonaries ==> dictionaries
data/r-bioc-rhtslib-1.22.0+dfsg/src/htslib-1.7/htslib/vcf.h:178: als ==> also
data/r-bioc-rhtslib-1.22.0+dfsg/src/htslib-1.7/htslib/vcf.h:179: als ==> also
data/r-bioc-rhtslib-1.22.0+dfsg/src/htslib-1.7/htslib/vcfutils.h:84: splitted ==> split
data/r-bioc-rhtslib-1.22.0+dfsg/src/htslib-1.7/test/c1#unknown.sam:2: permuations ==> permutations
data/r-bioc-rhtslib-1.22.0+dfsg/src/htslib-1.7/test/ce#1.sam:2: BA ==> BY, BE
data/r-bioc-rhtslib-1.22.0+dfsg/src/htslib-1.7/test/ce#2.sam:2: BA ==> BY, BE
data/r-bioc-rhtslib-1.22.0+dfsg/src/htslib-1.7/test/ce#5.sam:6: BA ==> BY, BE
data/r-bioc-rhtslib-1.22.0+dfsg/src/htslib-1.7/test/ce#5.sam:7: BA ==> BY, BE
data/r-bioc-rhtslib-1.22.0+dfsg/src/htslib-1.7/test/ce#5.sam:8: BA ==> BY, BE
data/r-bioc-rhtslib-1.22.0+dfsg/src/htslib-1.7/test/ce#5.sam:9: BA ==> BY, BE
data/r-bioc-rhtslib-1.22.0+dfsg/src/htslib-1.7/test/ce#5.sam:10: BA ==> BY, BE
data/r-bioc-rhtslib-1.22.0+dfsg/src/htslib-1.7/test/ce#5.sam:11: BA ==> BY, BE
data/r-bioc-rhtslib-1.22.0+dfsg/src/htslib-1.7/test/ce#5b.sam:6: BA ==> BY, BE
data/r-bioc-rhtslib-1.22.0+dfsg/src/htslib-1.7/test/ce#5b.sam:7: BA ==> BY, BE
data/r-bioc-rhtslib-1.22.0+dfsg/src/htslib-1.7/test/ce#5b.sam:8: BA ==> BY, BE
data/r-bioc-rhtslib-1.22.0+dfsg/src/htslib-1.7/test/ce#5b.sam:9: BA ==> BY, BE
data/r-bioc-rhtslib-1.22.0+dfsg/src/htslib-1.7/test/ce#5b.sam:10: BA ==> BY, BE
data/r-bioc-rhtslib-1.22.0+dfsg/src/htslib-1.7/test/ce#large_seq.sam:3: BA ==> BY, BE
data/r-bioc-rhtslib-1.22.0+dfsg/src/htslib-1.7/test/ce#tag_depadded.sam:4: BA ==> BY, BE
data/r-bioc-rhtslib-1.22.0+dfsg/src/htslib-1.7/test/ce#tag_depadded.sam:5: BA ==> BY, BE
data/r-bioc-rhtslib-1.22.0+dfsg/src/htslib-1.7/test/ce#tag_depadded.sam:6: BA ==> BY, BE
data/r-bioc-rhtslib-1.22.0+dfsg/src/htslib-1.7/test/ce#tag_depadded.sam:7: BA ==> BY, BE
data/r-bioc-rhtslib-1.22.0+dfsg/src/htslib-1.7/test/ce#tag_depadded.sam:8: BA ==> BY, BE
data/r-bioc-rhtslib-1.22.0+dfsg/src/htslib-1.7/test/ce#tag_padded.sam:4: BA ==> BY, BE
data/r-bioc-rhtslib-1.22.0+dfsg/src/htslib-1.7/test/ce#tag_padded.sam:5: BA ==> BY, BE
data/r-bioc-rhtslib-1.22.0+dfsg/src/htslib-1.7/test/ce#tag_padded.sam:6: BA ==> BY, BE
data/r-bioc-rhtslib-1.22.0+dfsg/src/htslib-1.7/test/ce#tag_padded.sam:7: BA ==> BY, BE
data/r-bioc-rhtslib-1.22.0+dfsg/src/htslib-1.7/test/ce#tag_padded.sam:8: BA ==> BY, BE
data/r-bioc-rhtslib-1.22.0+dfsg/src/htslib-1.7/test/ce#unmap.sam:1: BA ==> BY, BE
data/r-bioc-rhtslib-1.22.0+dfsg/src/htslib-1.7/test/ce#unmap.sam:2: BA ==> BY, BE
data/r-bioc-rhtslib-1.22.0+dfsg/src/htslib-1.7/test/ce#unmap.sam:3: BA ==> BY, BE
data/r-bioc-rhtslib-1.22.0+dfsg/src/htslib-1.7/test/ce#unmap.sam:4: BA ==> BY, BE
data/r-bioc-rhtslib-1.22.0+dfsg/src/htslib-1.7/test/ce#unmap.sam:5: BA ==> BY, BE
data/r-bioc-rhtslib-1.22.0+dfsg/src/htslib-1.7/test/ce#unmap.sam:6: BA ==> BY, BE
data/r-bioc-rhtslib-1.22.0+dfsg/src/htslib-1.7/test/ce#unmap1.sam:11: BA ==> BY, BE
data/r-bioc-rhtslib-1.22.0+dfsg/src/htslib-1.7/test/ce#unmap2.sam:11: BA ==> BY, BE
data/r-bioc-rhtslib-1.22.0+dfsg/src/htslib-1.7/test/ce#unmap2.sam:20: BA ==> BY, BE
data/r-bioc-rhtslib-1.22.0+dfsg/src/htslib-1.7/test/ce#unmap2.sam:21: BA ==> BY, BE
data/r-bioc-rhtslib-1.22.0+dfsg/src/htslib-1.7/test/test-bcf-sr.pl:99: als ==> also
data/r-bioc-rhtslib-1.22.0+dfsg/src/htslib-1.7/test/test-bcf-sr.pl:102: als ==> also
data/r-bioc-rhtslib-1.22.0+dfsg/src/htslib-1.7/test/test-bcf-sr.pl:112: als ==> also
data/r-bioc-rhtslib-1.22.0+dfsg/src/htslib-1.7/test/test-bcf-sr.pl:115: als ==> also
data/r-bioc-rhtslib-1.22.0+dfsg/src/htslib-1.7/test/test-bcf-sr.pl:125: als ==> also
data/r-bioc-rhtslib-1.22.0+dfsg/src/htslib-1.7/test/test-bcf-sr.pl:128: als ==> also
data/r-bioc-rhtslib-1.22.0+dfsg/src/htslib-1.7/test/test-vcf-hdr-in.vcf:7: Lod ==> Load
data/r-bioc-rhtslib-1.22.0+dfsg/src/htslib-1.7/test/test-vcf-hdr-in.vcf:8: Lod ==> Load
data/r-bioc-rhtslib-1.22.0+dfsg/src/htslib-1.7/test/test-vcf-hdr.out:8: Lod ==> Load
data/r-bioc-rhtslib-1.22.0+dfsg/src/htslib-1.7/test/test-vcf-hdr.out:9: Lod ==> Load
data/r-bioc-rhtslib-1.22.0+dfsg/src/htslib-1.7/test/test.pl:48: nNumber ==> number
data/r-bioc-rhtslib-1.22.0+dfsg/src/htslib-1.7/test/test.pl:167: tthe ==> the
data/r-bioc-rhtslib-1.22.0+dfsg/src/htslib-1.7/test/test.pl:191: tthe ==> the
data/r-bioc-rhtslib-1.22.0+dfsg/src/htslib-1.7/test/test_view.c:88: specificed ==> specified
data/r-bioc-rhtslib-1.22.0+dfsg/src/htslib-1.7/test/xx#large_aux.sam:2: ba ==> by, be
data/r-bioc-rhtslib-1.22.0+dfsg/src/htslib-1.7/test/xx#large_aux.sam:2: fo ==> of, for
data/r-bioc-rhtslib-1.22.0+dfsg/src/htslib-1.7/test/xx#large_aux.sam:3: ba ==> by, be
data/r-bioc-rhtslib-1.22.0+dfsg/src/htslib-1.7/test/xx#large_aux.sam:3: fo ==> of, for
data/r-bioc-rhtslib-1.22.0+dfsg/src/htslib-1.7/test/xx#large_aux.sam:3: Ba ==> By, be
data/r-bioc-rhtslib-1.22.0+dfsg/src/htslib-1.7/test/xx#large_aux.sam:3: Fo ==> Of, for
data/r-bioc-rhtslib-1.22.0+dfsg/vignettes/Rhtslib.Rmd:123: mimicks ==> mimics