data/r-bioc-rsubread-2.4.2/CHANGELOG:17: bondary ==> boundary
data/r-bioc-rsubread-2.4.2/CHANGELOG:162: Occurance ==> Occurrence
data/r-bioc-rsubread-2.4.2/CHANGELOG:189: infinit ==> infinite
data/r-bioc-rsubread-2.4.2/CHANGELOG:336: consistant ==> consistent
data/r-bioc-rsubread-2.4.2/CHANGELOG:346: quiting ==> quitting
data/r-bioc-rsubread-2.4.2/CHANGELOG:492: Incoporate ==> Incorporate
data/r-bioc-rsubread-2.4.2/CHANGELOG:495: Incoporate ==> Incorporate
data/r-bioc-rsubread-2.4.2/CHANGELOG:593: scientifc ==> scientific
data/r-bioc-rsubread-2.4.2/CHANGELOG:824: requies ==> requires
data/r-bioc-rsubread-2.4.2/CHANGELOG:824: continous ==> continuous
data/r-bioc-rsubread-2.4.2/R/align.R:21: sustems ==> systems
data/r-bioc-rsubread-2.4.2/R/buildindex.R:3: sustems ==> systems
data/r-bioc-rsubread-2.4.2/R/cellCounts.R:412: pres ==> press
data/r-bioc-rsubread-2.4.2/R/cellCounts.R:413: pres ==> press
data/r-bioc-rsubread-2.4.2/R/cellCounts.R:414: pres ==> press
data/r-bioc-rsubread-2.4.2/R/cellCounts.R:421: pres ==> press
data/r-bioc-rsubread-2.4.2/R/featureCounts.R:66: nWe ==> new
data/r-bioc-rsubread-2.4.2/R/featureCounts.R:86: argumet ==> argument
data/r-bioc-rsubread-2.4.2/R/featureCounts.R:87: argumets ==> arguments
data/r-bioc-rsubread-2.4.2/R/featureCounts.R:90: argumet ==> argument
data/r-bioc-rsubread-2.4.2/R/processExons.R:10: Souce ==> Source
data/r-bioc-rsubread-2.4.2/R/qualityScores.R:8: Pleaes ==> Please
data/r-bioc-rsubread-2.4.2/R/subjunc.R:3: sustems ==> systems
data/r-bioc-rsubread-2.4.2/inst/qualf/ref-quality-strings-20k-100bp-ERR2_70-SRR3045231.txt:4: ADDD ==> ADD
data/r-bioc-rsubread-2.4.2/inst/qualf/ref-quality-strings-20k-100bp-ERR2_70-SRR3045231.txt:15: BA ==> BY, BE
data/r-bioc-rsubread-2.4.2/inst/qualf/ref-quality-strings-20k-100bp-ERR2_70-SRR3045231.txt:55: BA ==> BY, BE
data/r-bioc-rsubread-2.4.2/inst/qualf/ref-quality-strings-20k-100bp-ERR2_70-SRR3045231.txt:236: BA ==> BY, BE
data/r-bioc-rsubread-2.4.2/inst/qualf/ref-quality-strings-20k-100bp-ERR2_70-SRR3045231.txt:263: BA ==> BY, BE
data/r-bioc-rsubread-2.4.2/inst/qualf/ref-quality-strings-20k-100bp-ERR2_70-SRR3045231.txt:317: BA ==> BY, BE
data/r-bioc-rsubread-2.4.2/inst/qualf/ref-quality-strings-20k-100bp-ERR2_70-SRR3045231.txt:387: BA ==> BY, BE
data/r-bioc-rsubread-2.4.2/inst/qualf/ref-quality-strings-20k-100bp-ERR2_70-SRR3045231.txt:558: ADDD ==> ADD
data/r-bioc-rsubread-2.4.2/inst/qualf/ref-quality-strings-20k-100bp-ERR2_70-SRR3045231.txt:576: BA ==> BY, BE
data/r-bioc-rsubread-2.4.2/inst/qualf/ref-quality-strings-20k-100bp-ERR2_70-SRR3045231.txt:673: AFE ==> SAFE
data/r-bioc-rsubread-2.4.2/inst/qualf/ref-quality-strings-20k-100bp-ERR2_70-SRR3045231.txt:715: BA ==> BY, BE
data/r-bioc-rsubread-2.4.2/inst/qualf/ref-quality-strings-20k-100bp-ERR2_70-SRR3045231.txt:738: BA ==> BY, BE
data/r-bioc-rsubread-2.4.2/inst/qualf/ref-quality-strings-20k-100bp-ERR2_70-SRR3045231.txt:920: BA ==> BY, BE
data/r-bioc-rsubread-2.4.2/inst/qualf/ref-quality-strings-20k-100bp-ERR2_70-SRR3045231.txt:986: BA ==> BY, BE
data/r-bioc-rsubread-2.4.2/inst/qualf/ref-quality-strings-20k-100bp-ERR2_70-SRR3045231.txt:1001: BA ==> BY, BE
data/r-bioc-rsubread-2.4.2/inst/qualf/ref-quality-strings-20k-100bp-ERR2_70-SRR3045231.txt:1018: BA ==> BY, BE
data/r-bioc-rsubread-2.4.2/inst/qualf/ref-quality-strings-20k-100bp-ERR2_70-SRR3045231.txt:1045: BA ==> BY, BE
data/r-bioc-rsubread-2.4.2/inst/qualf/ref-quality-strings-20k-100bp-ERR2_70-SRR3045231.txt:1054: BA ==> BY, BE
data/r-bioc-rsubread-2.4.2/inst/qualf/ref-quality-strings-20k-100bp-ERR2_70-SRR3045231.txt:1067: AFE ==> SAFE
data/r-bioc-rsubread-2.4.2/inst/qualf/ref-quality-strings-20k-100bp-ERR2_70-SRR3045231.txt:1126: BA ==> BY, BE
data/r-bioc-rsubread-2.4.2/inst/qualf/ref-quality-strings-20k-100bp-ERR2_70-SRR3045231.txt:1267: BA ==> BY, BE
data/r-bioc-rsubread-2.4.2/inst/qualf/ref-quality-strings-20k-100bp-ERR2_70-SRR3045231.txt:1277: BA ==> BY, BE
data/r-bioc-rsubread-2.4.2/inst/qualf/ref-quality-strings-20k-100bp-ERR2_70-SRR3045231.txt:1374: BA ==> BY, BE
data/r-bioc-rsubread-2.4.2/inst/qualf/ref-quality-strings-20k-100bp-ERR2_70-SRR3045231.txt:1602: ADDD ==> ADD
data/r-bioc-rsubread-2.4.2/inst/qualf/ref-quality-strings-20k-100bp-ERR2_70-SRR3045231.txt:1691: BA ==> BY, BE
data/r-bioc-rsubread-2.4.2/inst/qualf/ref-quality-strings-20k-100bp-ERR2_70-SRR3045231.txt:1737: ADDD ==> ADD
data/r-bioc-rsubread-2.4.2/inst/qualf/ref-quality-strings-20k-100bp-ERR2_70-SRR3045231.txt:1747: BA ==> BY, BE
data/r-bioc-rsubread-2.4.2/inst/qualf/ref-quality-strings-20k-100bp-ERR2_70-SRR3045231.txt:1857: BA ==> BY, BE
data/r-bioc-rsubread-2.4.2/inst/qualf/ref-quality-strings-20k-100bp-ERR2_70-SRR3045231.txt:1870: BA ==> BY, BE
data/r-bioc-rsubread-2.4.2/inst/qualf/ref-quality-strings-20k-100bp-ERR2_70-SRR3045231.txt:1871: BA ==> BY, BE
data/r-bioc-rsubread-2.4.2/inst/qualf/ref-quality-strings-20k-100bp-ERR2_70-SRR3045231.txt:1891: BA ==> BY, BE
data/r-bioc-rsubread-2.4.2/inst/qualf/ref-quality-strings-20k-100bp-ERR2_70-SRR3045231.txt:1992: BA ==> BY, BE
data/r-bioc-rsubread-2.4.2/inst/qualf/ref-quality-strings-20k-100bp-ERR2_70-SRR3045231.txt:2071: BA ==> BY, BE
data/r-bioc-rsubread-2.4.2/inst/qualf/ref-quality-strings-20k-100bp-ERR2_70-SRR3045231.txt:2131: BA ==> BY, BE
data/r-bioc-rsubread-2.4.2/inst/qualf/ref-quality-strings-20k-100bp-ERR2_70-SRR3045231.txt:2134: ADDD ==> ADD
data/r-bioc-rsubread-2.4.2/inst/qualf/ref-quality-strings-20k-100bp-ERR2_70-SRR3045231.txt:2180: BA ==> BY, BE
data/r-bioc-rsubread-2.4.2/inst/qualf/ref-quality-strings-20k-100bp-ERR2_70-SRR3045231.txt:2256: BA ==> BY, BE
data/r-bioc-rsubread-2.4.2/inst/qualf/ref-quality-strings-20k-100bp-ERR2_70-SRR3045231.txt:2350: BA ==> BY, BE
data/r-bioc-rsubread-2.4.2/inst/qualf/ref-quality-strings-20k-100bp-ERR2_70-SRR3045231.txt:2488: BA ==> BY, BE
data/r-bioc-rsubread-2.4.2/inst/qualf/ref-quality-strings-20k-100bp-ERR2_70-SRR3045231.txt:2512: BA ==> BY, BE
data/r-bioc-rsubread-2.4.2/inst/qualf/ref-quality-strings-20k-100bp-ERR2_70-SRR3045231.txt:2560: BA ==> BY, BE
data/r-bioc-rsubread-2.4.2/inst/qualf/ref-quality-strings-20k-100bp-ERR2_70-SRR3045231.txt:2580: BA ==> BY, BE
data/r-bioc-rsubread-2.4.2/inst/qualf/ref-quality-strings-20k-100bp-ERR2_70-SRR3045231.txt:2593: DED ==> DEAD
data/r-bioc-rsubread-2.4.2/inst/qualf/ref-quality-strings-20k-100bp-ERR2_70-SRR3045231.txt:2654: BA ==> BY, BE
data/r-bioc-rsubread-2.4.2/inst/qualf/ref-quality-strings-20k-100bp-ERR2_70-SRR3045231.txt:2753: BA ==> BY, BE
data/r-bioc-rsubread-2.4.2/inst/qualf/ref-quality-strings-20k-100bp-ERR2_70-SRR3045231.txt:2827: BA ==> BY, BE
data/r-bioc-rsubread-2.4.2/inst/qualf/ref-quality-strings-20k-100bp-ERR2_70-SRR3045231.txt:2838: ADDD ==> ADD
data/r-bioc-rsubread-2.4.2/inst/qualf/ref-quality-strings-20k-100bp-ERR2_70-SRR3045231.txt:2841: AADD ==> ADD
data/r-bioc-rsubread-2.4.2/inst/qualf/ref-quality-strings-20k-100bp-ERR2_70-SRR3045231.txt:2870: BA ==> BY, BE
data/r-bioc-rsubread-2.4.2/inst/qualf/ref-quality-strings-20k-100bp-ERR2_70-SRR3045231.txt:2876: BA ==> BY, BE
data/r-bioc-rsubread-2.4.2/inst/qualf/ref-quality-strings-20k-100bp-ERR2_70-SRR3045231.txt:2885: CACE ==> CACHE
data/r-bioc-rsubread-2.4.2/inst/qualf/ref-quality-strings-20k-100bp-ERR2_70-SRR3045231.txt:2885: BA ==> BY, BE
data/r-bioc-rsubread-2.4.2/inst/qualf/ref-quality-strings-20k-100bp-ERR2_70-SRR3045231.txt:2889: BA ==> BY, BE
data/r-bioc-rsubread-2.4.2/inst/qualf/ref-quality-strings-20k-100bp-ERR2_70-SRR3045231.txt:2941: BA ==> BY, BE
data/r-bioc-rsubread-2.4.2/inst/qualf/ref-quality-strings-20k-100bp-ERR2_70-SRR3045231.txt:2958: ADDD ==> ADD
data/r-bioc-rsubread-2.4.2/inst/qualf/ref-quality-strings-20k-100bp-ERR2_70-SRR3045231.txt:3045: BA ==> BY, BE
data/r-bioc-rsubread-2.4.2/inst/qualf/ref-quality-strings-20k-100bp-ERR2_70-SRR3045231.txt:3063: BA ==> BY, BE
data/r-bioc-rsubread-2.4.2/inst/qualf/ref-quality-strings-20k-100bp-ERR2_70-SRR3045231.txt:3203: BA ==> BY, BE
data/r-bioc-rsubread-2.4.2/inst/qualf/ref-quality-strings-20k-100bp-ERR2_70-SRR3045231.txt:3439: BA ==> BY, BE
data/r-bioc-rsubread-2.4.2/inst/qualf/ref-quality-strings-20k-100bp-ERR2_70-SRR3045231.txt:3549: BA ==> BY, BE
data/r-bioc-rsubread-2.4.2/inst/qualf/ref-quality-strings-20k-100bp-ERR2_70-SRR3045231.txt:3555: BA ==> BY, BE
data/r-bioc-rsubread-2.4.2/inst/qualf/ref-quality-strings-20k-100bp-ERR2_70-SRR3045231.txt:3568: BA ==> BY, BE
data/r-bioc-rsubread-2.4.2/inst/qualf/ref-quality-strings-20k-100bp-ERR2_70-SRR3045231.txt:3770: ADDD ==> ADD
data/r-bioc-rsubread-2.4.2/inst/qualf/ref-quality-strings-20k-100bp-ERR2_70-SRR3045231.txt:3793: AADD ==> ADD
data/r-bioc-rsubread-2.4.2/inst/qualf/ref-quality-strings-20k-100bp-ERR2_70-SRR3045231.txt:3855: BA ==> BY, BE
data/r-bioc-rsubread-2.4.2/inst/qualf/ref-quality-strings-20k-100bp-ERR2_70-SRR3045231.txt:3857: BA ==> BY, BE
data/r-bioc-rsubread-2.4.2/inst/qualf/ref-quality-strings-20k-100bp-ERR2_70-SRR3045231.txt:3873: BA ==> BY, BE
data/r-bioc-rsubread-2.4.2/inst/qualf/ref-quality-strings-20k-100bp-ERR2_70-SRR3045231.txt:3957: BA ==> BY, BE
data/r-bioc-rsubread-2.4.2/inst/qualf/ref-quality-strings-20k-100bp-ERR2_70-SRR3045231.txt:4021: BA ==> BY, BE
data/r-bioc-rsubread-2.4.2/inst/qualf/ref-quality-strings-20k-100bp-ERR2_70-SRR3045231.txt:4091: BA ==> BY, BE
data/r-bioc-rsubread-2.4.2/inst/qualf/ref-quality-strings-20k-100bp-ERR2_70-SRR3045231.txt:4132: BA ==> BY, BE
data/r-bioc-rsubread-2.4.2/inst/qualf/ref-quality-strings-20k-100bp-ERR2_70-SRR3045231.txt:4331: BA ==> BY, BE
data/r-bioc-rsubread-2.4.2/inst/qualf/ref-quality-strings-20k-100bp-ERR2_70-SRR3045231.txt:4389: BA ==> BY, BE
data/r-bioc-rsubread-2.4.2/inst/qualf/ref-quality-strings-20k-100bp-ERR2_70-SRR3045231.txt:4409: BA ==> BY, BE
data/r-bioc-rsubread-2.4.2/inst/qualf/ref-quality-strings-20k-100bp-ERR2_70-SRR3045231.txt:4474: DAA ==> DATA
data/r-bioc-rsubread-2.4.2/inst/qualf/ref-quality-strings-20k-100bp-ERR2_70-SRR3045231.txt:4477: BA ==> BY, BE
data/r-bioc-rsubread-2.4.2/inst/qualf/ref-quality-strings-20k-100bp-ERR2_70-SRR3045231.txt:4535: BA ==> BY, BE
data/r-bioc-rsubread-2.4.2/inst/qualf/ref-quality-strings-20k-100bp-ERR2_70-SRR3045231.txt:4537: BA ==> BY, BE
data/r-bioc-rsubread-2.4.2/inst/qualf/ref-quality-strings-20k-100bp-ERR2_70-SRR3045231.txt:4554: BA ==> BY, BE
data/r-bioc-rsubread-2.4.2/inst/qualf/ref-quality-strings-20k-100bp-ERR2_70-SRR3045231.txt:4566: DAA ==> DATA
data/r-bioc-rsubread-2.4.2/inst/qualf/ref-quality-strings-20k-100bp-ERR2_70-SRR3045231.txt:4566: BA ==> BY, BE
data/r-bioc-rsubread-2.4.2/inst/qualf/ref-quality-strings-20k-100bp-ERR2_70-SRR3045231.txt:4617: BA ==> BY, BE
data/r-bioc-rsubread-2.4.2/inst/qualf/ref-quality-strings-20k-100bp-ERR2_70-SRR3045231.txt:4808: BA ==> BY, BE
data/r-bioc-rsubread-2.4.2/inst/qualf/ref-quality-strings-20k-100bp-ERR2_70-SRR3045231.txt:4820: AFE ==> SAFE
data/r-bioc-rsubread-2.4.2/inst/qualf/ref-quality-strings-20k-100bp-ERR2_70-SRR3045231.txt:4839: ADDD ==> ADD
data/r-bioc-rsubread-2.4.2/inst/qualf/ref-quality-strings-20k-100bp-ERR2_70-SRR3045231.txt:5001: BA ==> BY, BE
data/r-bioc-rsubread-2.4.2/inst/qualf/ref-quality-strings-20k-100bp-ERR2_70-SRR3045231.txt:5002: BA ==> BY, BE
data/r-bioc-rsubread-2.4.2/inst/qualf/ref-quality-strings-20k-100bp-ERR2_70-SRR3045231.txt:5054: BA ==> BY, BE
data/r-bioc-rsubread-2.4.2/inst/qualf/ref-quality-strings-20k-100bp-ERR2_70-SRR3045231.txt:5082: BA ==> BY, BE
data/r-bioc-rsubread-2.4.2/inst/qualf/ref-quality-strings-20k-100bp-ERR2_70-SRR3045231.txt:5106: BA ==> BY, BE
data/r-bioc-rsubread-2.4.2/inst/qualf/ref-quality-strings-20k-100bp-ERR2_70-SRR3045231.txt:5127: BA ==> BY, BE
data/r-bioc-rsubread-2.4.2/inst/qualf/ref-quality-strings-20k-100bp-ERR2_70-SRR3045231.txt:5140: BA ==> BY, BE
data/r-bioc-rsubread-2.4.2/inst/qualf/ref-quality-strings-20k-100bp-ERR2_70-SRR3045231.txt:5478: BA ==> BY, BE
data/r-bioc-rsubread-2.4.2/inst/qualf/ref-quality-strings-20k-100bp-ERR2_70-SRR3045231.txt:5537: BA ==> BY, BE
data/r-bioc-rsubread-2.4.2/inst/qualf/ref-quality-strings-20k-100bp-ERR2_70-SRR3045231.txt:5559: ADDD ==> ADD
data/r-bioc-rsubread-2.4.2/inst/qualf/ref-quality-strings-20k-100bp-ERR2_70-SRR3045231.txt:5629: BA ==> BY, BE
data/r-bioc-rsubread-2.4.2/inst/qualf/ref-quality-strings-20k-100bp-ERR2_70-SRR3045231.txt:5699: BA ==> BY, BE
data/r-bioc-rsubread-2.4.2/inst/qualf/ref-quality-strings-20k-100bp-ERR2_70-SRR3045231.txt:5810: BA ==> BY, BE
data/r-bioc-rsubread-2.4.2/inst/qualf/ref-quality-strings-20k-100bp-ERR2_70-SRR3045231.txt:5993: BA ==> BY, BE
data/r-bioc-rsubread-2.4.2/inst/qualf/ref-quality-strings-20k-100bp-ERR2_70-SRR3045231.txt:6009: BA ==> BY, BE
data/r-bioc-rsubread-2.4.2/inst/qualf/ref-quality-strings-20k-100bp-ERR2_70-SRR3045231.txt:6101: BA ==> BY, BE
data/r-bioc-rsubread-2.4.2/inst/qualf/ref-quality-strings-20k-100bp-ERR2_70-SRR3045231.txt:6106: BA ==> BY, BE
data/r-bioc-rsubread-2.4.2/inst/qualf/ref-quality-strings-20k-100bp-ERR2_70-SRR3045231.txt:6174: BA ==> BY, BE
data/r-bioc-rsubread-2.4.2/inst/qualf/ref-quality-strings-20k-100bp-ERR2_70-SRR3045231.txt:6211: BA ==> BY, BE
data/r-bioc-rsubread-2.4.2/inst/qualf/ref-quality-strings-20k-100bp-ERR2_70-SRR3045231.txt:6272: BA ==> BY, BE
data/r-bioc-rsubread-2.4.2/inst/qualf/ref-quality-strings-20k-100bp-ERR2_70-SRR3045231.txt:6344: BA ==> BY, BE
data/r-bioc-rsubread-2.4.2/inst/qualf/ref-quality-strings-20k-100bp-ERR2_70-SRR3045231.txt:6459: BA ==> BY, BE
data/r-bioc-rsubread-2.4.2/inst/qualf/ref-quality-strings-20k-100bp-ERR2_70-SRR3045231.txt:6584: BA ==> BY, BE
data/r-bioc-rsubread-2.4.2/inst/qualf/ref-quality-strings-20k-100bp-ERR2_70-SRR3045231.txt:6649: BA ==> BY, BE
data/r-bioc-rsubread-2.4.2/inst/qualf/ref-quality-strings-20k-100bp-ERR2_70-SRR3045231.txt:6733: BA ==> BY, BE
data/r-bioc-rsubread-2.4.2/inst/qualf/ref-quality-strings-20k-100bp-ERR2_70-SRR3045231.txt:6747: BA ==> BY, BE
data/r-bioc-rsubread-2.4.2/inst/qualf/ref-quality-strings-20k-100bp-ERR2_70-SRR3045231.txt:6806: BA ==> BY, BE
data/r-bioc-rsubread-2.4.2/inst/qualf/ref-quality-strings-20k-100bp-ERR2_70-SRR3045231.txt:6965: BA ==> BY, BE
data/r-bioc-rsubread-2.4.2/inst/qualf/ref-quality-strings-20k-100bp-ERR2_70-SRR3045231.txt:7039: DED ==> DEAD
data/r-bioc-rsubread-2.4.2/inst/qualf/ref-quality-strings-20k-100bp-ERR2_70-SRR3045231.txt:7046: DED ==> DEAD
data/r-bioc-rsubread-2.4.2/inst/qualf/ref-quality-strings-20k-100bp-ERR2_70-SRR3045231.txt:7061: DAA ==> DATA
data/r-bioc-rsubread-2.4.2/inst/qualf/ref-quality-strings-20k-100bp-ERR2_70-SRR3045231.txt:7118: BA ==> BY, BE
data/r-bioc-rsubread-2.4.2/inst/qualf/ref-quality-strings-20k-100bp-ERR2_70-SRR3045231.txt:7175: BA ==> BY, BE
data/r-bioc-rsubread-2.4.2/inst/qualf/ref-quality-strings-20k-100bp-ERR2_70-SRR3045231.txt:7197: BA ==> BY, BE
data/r-bioc-rsubread-2.4.2/inst/qualf/ref-quality-strings-20k-100bp-ERR2_70-SRR3045231.txt:7397: BA ==> BY, BE
data/r-bioc-rsubread-2.4.2/inst/qualf/ref-quality-strings-20k-100bp-ERR2_70-SRR3045231.txt:7419: BA ==> BY, BE
data/r-bioc-rsubread-2.4.2/inst/qualf/ref-quality-strings-20k-100bp-ERR2_70-SRR3045231.txt:7520: BA ==> BY, BE
data/r-bioc-rsubread-2.4.2/inst/qualf/ref-quality-strings-20k-100bp-ERR2_70-SRR3045231.txt:7548: ADDD ==> ADD
data/r-bioc-rsubread-2.4.2/inst/qualf/ref-quality-strings-20k-100bp-ERR2_70-SRR3045231.txt:7640: HGE ==> HE
data/r-bioc-rsubread-2.4.2/inst/qualf/ref-quality-strings-20k-100bp-ERR2_70-SRR3045231.txt:7875: ADDD ==> ADD
data/r-bioc-rsubread-2.4.2/inst/qualf/ref-quality-strings-20k-100bp-ERR2_70-SRR3045231.txt:7880: BA ==> BY, BE
data/r-bioc-rsubread-2.4.2/inst/qualf/ref-quality-strings-20k-100bp-ERR2_70-SRR3045231.txt:7898: EDE ==> EDGE
data/r-bioc-rsubread-2.4.2/inst/qualf/ref-quality-strings-20k-100bp-ERR2_70-SRR3045231.txt:7905: BA ==> BY, BE
data/r-bioc-rsubread-2.4.2/inst/qualf/ref-quality-strings-20k-100bp-ERR2_70-SRR3045231.txt:8013: ADDD ==> ADD
data/r-bioc-rsubread-2.4.2/inst/qualf/ref-quality-strings-20k-100bp-ERR2_70-SRR3045231.txt:8185: DAA ==> DATA
data/r-bioc-rsubread-2.4.2/inst/qualf/ref-quality-strings-20k-100bp-ERR2_70-SRR3045231.txt:8231: BA ==> BY, BE
data/r-bioc-rsubread-2.4.2/inst/qualf/ref-quality-strings-20k-100bp-ERR2_70-SRR3045231.txt:8292: BA ==> BY, BE
data/r-bioc-rsubread-2.4.2/inst/qualf/ref-quality-strings-20k-100bp-ERR2_70-SRR3045231.txt:8508: BA ==> BY, BE
data/r-bioc-rsubread-2.4.2/inst/qualf/ref-quality-strings-20k-100bp-ERR2_70-SRR3045231.txt:8522: BA ==> BY, BE
data/r-bioc-rsubread-2.4.2/inst/qualf/ref-quality-strings-20k-100bp-ERR2_70-SRR3045231.txt:8634: ADDD ==> ADD
data/r-bioc-rsubread-2.4.2/inst/qualf/ref-quality-strings-20k-100bp-ERR2_70-SRR3045231.txt:8645: BA ==> BY, BE
data/r-bioc-rsubread-2.4.2/inst/qualf/ref-quality-strings-20k-100bp-ERR2_70-SRR3045231.txt:8795: BA ==> BY, BE
data/r-bioc-rsubread-2.4.2/inst/qualf/ref-quality-strings-20k-100bp-ERR2_70-SRR3045231.txt:8818: BA ==> BY, BE
data/r-bioc-rsubread-2.4.2/inst/qualf/ref-quality-strings-20k-100bp-ERR2_70-SRR3045231.txt:8831: ADDD ==> ADD
data/r-bioc-rsubread-2.4.2/inst/qualf/ref-quality-strings-20k-100bp-ERR2_70-SRR3045231.txt:8936: DAA ==> DATA
data/r-bioc-rsubread-2.4.2/inst/qualf/ref-quality-strings-20k-100bp-ERR2_70-SRR3045231.txt:9024: BA ==> BY, BE
data/r-bioc-rsubread-2.4.2/inst/qualf/ref-quality-strings-20k-100bp-ERR2_70-SRR3045231.txt:9209: BA ==> BY, BE
data/r-bioc-rsubread-2.4.2/inst/qualf/ref-quality-strings-20k-100bp-ERR2_70-SRR3045231.txt:9234: BA ==> BY, BE
data/r-bioc-rsubread-2.4.2/inst/qualf/ref-quality-strings-20k-100bp-ERR2_70-SRR3045231.txt:9254: BA ==> BY, BE
data/r-bioc-rsubread-2.4.2/inst/qualf/ref-quality-strings-20k-100bp-ERR2_70-SRR3045231.txt:9419: BA ==> BY, BE
data/r-bioc-rsubread-2.4.2/inst/qualf/ref-quality-strings-20k-100bp-ERR2_70-SRR3045231.txt:9436: BA ==> BY, BE
data/r-bioc-rsubread-2.4.2/inst/qualf/ref-quality-strings-20k-100bp-ERR2_70-SRR3045231.txt:9490: ADDD ==> ADD
data/r-bioc-rsubread-2.4.2/inst/qualf/ref-quality-strings-20k-100bp-ERR2_70-SRR3045231.txt:9496: AFE ==> SAFE
data/r-bioc-rsubread-2.4.2/inst/qualf/ref-quality-strings-20k-100bp-ERR2_70-SRR3045231.txt:9531: ADDD ==> ADD
data/r-bioc-rsubread-2.4.2/inst/qualf/ref-quality-strings-20k-100bp-ERR2_70-SRR3045231.txt:9745: BA ==> BY, BE
data/r-bioc-rsubread-2.4.2/inst/qualf/ref-quality-strings-20k-100bp-ERR2_70-SRR3045231.txt:9800: AFE ==> SAFE
data/r-bioc-rsubread-2.4.2/inst/qualf/ref-quality-strings-20k-100bp-ERR2_70-SRR3045231.txt:9823: BA ==> BY, BE
data/r-bioc-rsubread-2.4.2/inst/qualf/ref-quality-strings-20k-100bp-ERR2_70-SRR3045231.txt:9964: DED ==> DEAD
data/r-bioc-rsubread-2.4.2/inst/qualf/ref-quality-strings-20k-100bp-ERR2_70-SRR3045231.txt:10374: ADDD ==> ADD
data/r-bioc-rsubread-2.4.2/inst/qualf/ref-quality-strings-20k-100bp-ERR2_70-SRR3045231.txt:10481: BA ==> BY, BE
data/r-bioc-rsubread-2.4.2/inst/qualf/ref-quality-strings-20k-100bp-ERR2_70-SRR3045231.txt:10553: BA ==> BY, BE
data/r-bioc-rsubread-2.4.2/inst/qualf/ref-quality-strings-20k-100bp-ERR2_70-SRR3045231.txt:10568: ACII ==> ASCII
data/r-bioc-rsubread-2.4.2/inst/qualf/ref-quality-strings-20k-100bp-ERR2_70-SRR3045231.txt:10642: BA ==> BY, BE
data/r-bioc-rsubread-2.4.2/inst/qualf/ref-quality-strings-20k-100bp-ERR2_70-SRR3045231.txt:10758: EGE ==> EDGE
data/r-bioc-rsubread-2.4.2/inst/qualf/ref-quality-strings-20k-100bp-ERR2_70-SRR3045231.txt:10777: ADDD ==> ADD
data/r-bioc-rsubread-2.4.2/inst/qualf/ref-quality-strings-20k-100bp-ERR2_70-SRR3045231.txt:10797: AADD ==> ADD
data/r-bioc-rsubread-2.4.2/inst/qualf/ref-quality-strings-20k-100bp-ERR2_70-SRR3045231.txt:10894: BA ==> BY, BE
data/r-bioc-rsubread-2.4.2/inst/qualf/ref-quality-strings-20k-100bp-ERR2_70-SRR3045231.txt:10975: BA ==> BY, BE
data/r-bioc-rsubread-2.4.2/inst/qualf/ref-quality-strings-20k-100bp-ERR2_70-SRR3045231.txt:10996: BA ==> BY, BE
data/r-bioc-rsubread-2.4.2/inst/qualf/ref-quality-strings-20k-100bp-ERR2_70-SRR3045231.txt:11135: AADD ==> ADD
data/r-bioc-rsubread-2.4.2/inst/qualf/ref-quality-strings-20k-100bp-ERR2_70-SRR3045231.txt:11139: BA ==> BY, BE
data/r-bioc-rsubread-2.4.2/inst/qualf/ref-quality-strings-20k-100bp-ERR2_70-SRR3045231.txt:11274: BA ==> BY, BE
data/r-bioc-rsubread-2.4.2/inst/qualf/ref-quality-strings-20k-100bp-ERR2_70-SRR3045231.txt:11319: ADDD ==> ADD
data/r-bioc-rsubread-2.4.2/inst/qualf/ref-quality-strings-20k-100bp-ERR2_70-SRR3045231.txt:11408: BA ==> BY, BE
data/r-bioc-rsubread-2.4.2/inst/qualf/ref-quality-strings-20k-100bp-ERR2_70-SRR3045231.txt:11423: AFE ==> SAFE
data/r-bioc-rsubread-2.4.2/inst/qualf/ref-quality-strings-20k-100bp-ERR2_70-SRR3045231.txt:11479: BA ==> BY, BE
data/r-bioc-rsubread-2.4.2/inst/qualf/ref-quality-strings-20k-100bp-ERR2_70-SRR3045231.txt:11479: BA ==> BY, BE
data/r-bioc-rsubread-2.4.2/inst/qualf/ref-quality-strings-20k-100bp-ERR2_70-SRR3045231.txt:11489: BA ==> BY, BE
data/r-bioc-rsubread-2.4.2/inst/qualf/ref-quality-strings-20k-100bp-ERR2_70-SRR3045231.txt:11505: BA ==> BY, BE
data/r-bioc-rsubread-2.4.2/inst/qualf/ref-quality-strings-20k-100bp-ERR2_70-SRR3045231.txt:11610: BA ==> BY, BE
data/r-bioc-rsubread-2.4.2/inst/qualf/ref-quality-strings-20k-100bp-ERR2_70-SRR3045231.txt:11615: ADDD ==> ADD
data/r-bioc-rsubread-2.4.2/inst/qualf/ref-quality-strings-20k-100bp-ERR2_70-SRR3045231.txt:11638: AADD ==> ADD
data/r-bioc-rsubread-2.4.2/inst/qualf/ref-quality-strings-20k-100bp-ERR2_70-SRR3045231.txt:11707: BA ==> BY, BE
data/r-bioc-rsubread-2.4.2/inst/qualf/ref-quality-strings-20k-100bp-ERR2_70-SRR3045231.txt:11761: BA ==> BY, BE
data/r-bioc-rsubread-2.4.2/inst/qualf/ref-quality-strings-20k-100bp-ERR2_70-SRR3045231.txt:11853: BA ==> BY, BE
data/r-bioc-rsubread-2.4.2/inst/qualf/ref-quality-strings-20k-100bp-ERR2_70-SRR3045231.txt:11980: BA ==> BY, BE
data/r-bioc-rsubread-2.4.2/inst/qualf/ref-quality-strings-20k-100bp-ERR2_70-SRR3045231.txt:11999: BA ==> BY, BE
data/r-bioc-rsubread-2.4.2/inst/qualf/ref-quality-strings-20k-100bp-ERR2_70-SRR3045231.txt:12266: ADDD ==> ADD
data/r-bioc-rsubread-2.4.2/inst/qualf/ref-quality-strings-20k-100bp-ERR2_70-SRR3045231.txt:12283: ADDD ==> ADD
data/r-bioc-rsubread-2.4.2/inst/qualf/ref-quality-strings-20k-100bp-ERR2_70-SRR3045231.txt:12283: BA ==> BY, BE
data/r-bioc-rsubread-2.4.2/inst/qualf/ref-quality-strings-20k-100bp-ERR2_70-SRR3045231.txt:12409: BA ==> BY, BE
data/r-bioc-rsubread-2.4.2/inst/qualf/ref-quality-strings-20k-100bp-ERR2_70-SRR3045231.txt:12422: CCAHE ==> CACHE
data/r-bioc-rsubread-2.4.2/inst/qualf/ref-quality-strings-20k-100bp-ERR2_70-SRR3045231.txt:12437: BA ==> BY, BE
data/r-bioc-rsubread-2.4.2/inst/qualf/ref-quality-strings-20k-100bp-ERR2_70-SRR3045231.txt:12514: BA ==> BY, BE
data/r-bioc-rsubread-2.4.2/inst/qualf/ref-quality-strings-20k-100bp-ERR2_70-SRR3045231.txt:12583: EGE ==> EDGE
data/r-bioc-rsubread-2.4.2/inst/qualf/ref-quality-strings-20k-100bp-ERR2_70-SRR3045231.txt:12609: ADDD ==> ADD
data/r-bioc-rsubread-2.4.2/inst/qualf/ref-quality-strings-20k-100bp-ERR2_70-SRR3045231.txt:12653: BA ==> BY, BE
data/r-bioc-rsubread-2.4.2/inst/qualf/ref-quality-strings-20k-100bp-ERR2_70-SRR3045231.txt:12656: BA ==> BY, BE
data/r-bioc-rsubread-2.4.2/inst/qualf/ref-quality-strings-20k-100bp-ERR2_70-SRR3045231.txt:12674: BA ==> BY, BE
data/r-bioc-rsubread-2.4.2/inst/qualf/ref-quality-strings-20k-100bp-ERR2_70-SRR3045231.txt:12710: BA ==> BY, BE
data/r-bioc-rsubread-2.4.2/inst/qualf/ref-quality-strings-20k-100bp-ERR2_70-SRR3045231.txt:12795: BA ==> BY, BE
data/r-bioc-rsubread-2.4.2/inst/qualf/ref-quality-strings-20k-100bp-ERR2_70-SRR3045231.txt:12834: DED ==> DEAD
data/r-bioc-rsubread-2.4.2/inst/qualf/ref-quality-strings-20k-100bp-ERR2_70-SRR3045231.txt:12885: AADD ==> ADD
data/r-bioc-rsubread-2.4.2/inst/qualf/ref-quality-strings-20k-100bp-ERR2_70-SRR3045231.txt:12953: BA ==> BY, BE
data/r-bioc-rsubread-2.4.2/inst/qualf/ref-quality-strings-20k-100bp-ERR2_70-SRR3045231.txt:12955: BA ==> BY, BE
data/r-bioc-rsubread-2.4.2/inst/qualf/ref-quality-strings-20k-100bp-ERR2_70-SRR3045231.txt:12972: BA ==> BY, BE
data/r-bioc-rsubread-2.4.2/inst/qualf/ref-quality-strings-20k-100bp-ERR2_70-SRR3045231.txt:13034: AADD ==> ADD
data/r-bioc-rsubread-2.4.2/inst/qualf/ref-quality-strings-20k-100bp-ERR2_70-SRR3045231.txt:13048: BA ==> BY, BE
data/r-bioc-rsubread-2.4.2/inst/qualf/ref-quality-strings-20k-100bp-ERR2_70-SRR3045231.txt:13063: BA ==> BY, BE
data/r-bioc-rsubread-2.4.2/inst/qualf/ref-quality-strings-20k-100bp-ERR2_70-SRR3045231.txt:13246: BA ==> BY, BE
data/r-bioc-rsubread-2.4.2/inst/qualf/ref-quality-strings-20k-100bp-ERR2_70-SRR3045231.txt:13271: BA ==> BY, BE
data/r-bioc-rsubread-2.4.2/inst/qualf/ref-quality-strings-20k-100bp-ERR2_70-SRR3045231.txt:13333: BA ==> BY, BE
data/r-bioc-rsubread-2.4.2/inst/qualf/ref-quality-strings-20k-100bp-ERR2_70-SRR3045231.txt:13460: ADGE ==> EDGE, BADGE, ADAGE
data/r-bioc-rsubread-2.4.2/inst/qualf/ref-quality-strings-20k-100bp-ERR2_70-SRR3045231.txt:13539: EGE ==> EDGE
data/r-bioc-rsubread-2.4.2/inst/qualf/ref-quality-strings-20k-100bp-ERR2_70-SRR3045231.txt:13629: BA ==> BY, BE
data/r-bioc-rsubread-2.4.2/inst/qualf/ref-quality-strings-20k-100bp-ERR2_70-SRR3045231.txt:13683: BA ==> BY, BE
data/r-bioc-rsubread-2.4.2/inst/qualf/ref-quality-strings-20k-100bp-ERR2_70-SRR3045231.txt:13709: BA ==> BY, BE
data/r-bioc-rsubread-2.4.2/inst/qualf/ref-quality-strings-20k-100bp-ERR2_70-SRR3045231.txt:13728: BA ==> BY, BE
data/r-bioc-rsubread-2.4.2/inst/qualf/ref-quality-strings-20k-100bp-ERR2_70-SRR3045231.txt:13895: AFE ==> SAFE
data/r-bioc-rsubread-2.4.2/inst/qualf/ref-quality-strings-20k-100bp-ERR2_70-SRR3045231.txt:13929: BA ==> BY, BE
data/r-bioc-rsubread-2.4.2/inst/qualf/ref-quality-strings-20k-100bp-ERR2_70-SRR3045231.txt:13940: BA ==> BY, BE
data/r-bioc-rsubread-2.4.2/inst/qualf/ref-quality-strings-20k-100bp-ERR2_70-SRR3045231.txt:13968: BA ==> BY, BE
data/r-bioc-rsubread-2.4.2/inst/qualf/ref-quality-strings-20k-100bp-ERR2_70-SRR3045231.txt:14021: EGE ==> EDGE
data/r-bioc-rsubread-2.4.2/inst/qualf/ref-quality-strings-20k-100bp-ERR2_70-SRR3045231.txt:14234: ADDD ==> ADD
data/r-bioc-rsubread-2.4.2/inst/qualf/ref-quality-strings-20k-100bp-ERR2_70-SRR3045231.txt:14338: BA ==> BY, BE
data/r-bioc-rsubread-2.4.2/inst/qualf/ref-quality-strings-20k-100bp-ERR2_70-SRR3045231.txt:14411: BA ==> BY, BE
data/r-bioc-rsubread-2.4.2/inst/qualf/ref-quality-strings-20k-100bp-ERR2_70-SRR3045231.txt:14484: BA ==> BY, BE
data/r-bioc-rsubread-2.4.2/inst/qualf/ref-quality-strings-20k-100bp-ERR2_70-SRR3045231.txt:14521: BA ==> BY, BE
data/r-bioc-rsubread-2.4.2/inst/qualf/ref-quality-strings-20k-100bp-ERR2_70-SRR3045231.txt:14557: BA ==> BY, BE
data/r-bioc-rsubread-2.4.2/inst/qualf/ref-quality-strings-20k-100bp-ERR2_70-SRR3045231.txt:14558: BA ==> BY, BE
data/r-bioc-rsubread-2.4.2/inst/qualf/ref-quality-strings-20k-100bp-ERR2_70-SRR3045231.txt:14599: EGE ==> EDGE
data/r-bioc-rsubread-2.4.2/inst/qualf/ref-quality-strings-20k-100bp-ERR2_70-SRR3045231.txt:14749: BA ==> BY, BE
data/r-bioc-rsubread-2.4.2/inst/qualf/ref-quality-strings-20k-100bp-ERR2_70-SRR3045231.txt:14764: BA ==> BY, BE
data/r-bioc-rsubread-2.4.2/inst/qualf/ref-quality-strings-20k-100bp-ERR2_70-SRR3045231.txt:15019: BA ==> BY, BE
data/r-bioc-rsubread-2.4.2/inst/qualf/ref-quality-strings-20k-100bp-ERR2_70-SRR3045231.txt:15069: BA ==> BY, BE
data/r-bioc-rsubread-2.4.2/inst/qualf/ref-quality-strings-20k-100bp-ERR2_70-SRR3045231.txt:15075: BA ==> BY, BE
data/r-bioc-rsubread-2.4.2/inst/qualf/ref-quality-strings-20k-100bp-ERR2_70-SRR3045231.txt:15094: BA ==> BY, BE
data/r-bioc-rsubread-2.4.2/inst/qualf/ref-quality-strings-20k-100bp-ERR2_70-SRR3045231.txt:15185: CAHE ==> CACHE
data/r-bioc-rsubread-2.4.2/inst/qualf/ref-quality-strings-20k-100bp-ERR2_70-SRR3045231.txt:15252: CHEC ==> CHECK
data/r-bioc-rsubread-2.4.2/inst/qualf/ref-quality-strings-20k-100bp-ERR2_70-SRR3045231.txt:15260: BA ==> BY, BE
data/r-bioc-rsubread-2.4.2/inst/qualf/ref-quality-strings-20k-100bp-ERR2_70-SRR3045231.txt:15396: ADDD ==> ADD
data/r-bioc-rsubread-2.4.2/inst/qualf/ref-quality-strings-20k-100bp-ERR2_70-SRR3045231.txt:15404: ADDD ==> ADD
data/r-bioc-rsubread-2.4.2/inst/qualf/ref-quality-strings-20k-100bp-ERR2_70-SRR3045231.txt:15436: DED ==> DEAD
data/r-bioc-rsubread-2.4.2/inst/qualf/ref-quality-strings-20k-100bp-ERR2_70-SRR3045231.txt:15544: BA ==> BY, BE
data/r-bioc-rsubread-2.4.2/inst/qualf/ref-quality-strings-20k-100bp-ERR2_70-SRR3045231.txt:15647: BA ==> BY, BE
data/r-bioc-rsubread-2.4.2/inst/qualf/ref-quality-strings-20k-100bp-ERR2_70-SRR3045231.txt:15706: BA ==> BY, BE
data/r-bioc-rsubread-2.4.2/inst/qualf/ref-quality-strings-20k-100bp-ERR2_70-SRR3045231.txt:15717: BA ==> BY, BE
data/r-bioc-rsubread-2.4.2/inst/qualf/ref-quality-strings-20k-100bp-ERR2_70-SRR3045231.txt:15747: AADD ==> ADD
data/r-bioc-rsubread-2.4.2/inst/qualf/ref-quality-strings-20k-100bp-ERR2_70-SRR3045231.txt:15897: BA ==> BY, BE
data/r-bioc-rsubread-2.4.2/inst/qualf/ref-quality-strings-20k-100bp-ERR2_70-SRR3045231.txt:15916: BA ==> BY, BE
data/r-bioc-rsubread-2.4.2/inst/qualf/ref-quality-strings-20k-100bp-ERR2_70-SRR3045231.txt:16051: BA ==> BY, BE
data/r-bioc-rsubread-2.4.2/inst/qualf/ref-quality-strings-20k-100bp-ERR2_70-SRR3045231.txt:16059: BA ==> BY, BE
data/r-bioc-rsubread-2.4.2/inst/qualf/ref-quality-strings-20k-100bp-ERR2_70-SRR3045231.txt:16068: DAA ==> DATA
data/r-bioc-rsubread-2.4.2/inst/qualf/ref-quality-strings-20k-100bp-ERR2_70-SRR3045231.txt:16096: HAA ==> HAS
data/r-bioc-rsubread-2.4.2/inst/qualf/ref-quality-strings-20k-100bp-ERR2_70-SRR3045231.txt:16103: BA ==> BY, BE
data/r-bioc-rsubread-2.4.2/inst/qualf/ref-quality-strings-20k-100bp-ERR2_70-SRR3045231.txt:16364: AFE ==> SAFE
data/r-bioc-rsubread-2.4.2/inst/qualf/ref-quality-strings-20k-100bp-ERR2_70-SRR3045231.txt:16413: ADDD ==> ADD
data/r-bioc-rsubread-2.4.2/inst/qualf/ref-quality-strings-20k-100bp-ERR2_70-SRR3045231.txt:16476: BA ==> BY, BE
data/r-bioc-rsubread-2.4.2/inst/qualf/ref-quality-strings-20k-100bp-ERR2_70-SRR3045231.txt:16488: BA ==> BY, BE
data/r-bioc-rsubread-2.4.2/inst/qualf/ref-quality-strings-20k-100bp-ERR2_70-SRR3045231.txt:16550: BA ==> BY, BE
data/r-bioc-rsubread-2.4.2/inst/qualf/ref-quality-strings-20k-100bp-ERR2_70-SRR3045231.txt:16550: BA ==> BY, BE
data/r-bioc-rsubread-2.4.2/inst/qualf/ref-quality-strings-20k-100bp-ERR2_70-SRR3045231.txt:16689: BA ==> BY, BE
data/r-bioc-rsubread-2.4.2/inst/qualf/ref-quality-strings-20k-100bp-ERR2_70-SRR3045231.txt:16772: AADD ==> ADD
data/r-bioc-rsubread-2.4.2/inst/qualf/ref-quality-strings-20k-100bp-ERR2_70-SRR3045231.txt:16805: BA ==> BY, BE
data/r-bioc-rsubread-2.4.2/inst/qualf/ref-quality-strings-20k-100bp-ERR2_70-SRR3045231.txt:16841: BA ==> BY, BE
data/r-bioc-rsubread-2.4.2/inst/qualf/ref-quality-strings-20k-100bp-ERR2_70-SRR3045231.txt:16859: ADDD ==> ADD
data/r-bioc-rsubread-2.4.2/inst/qualf/ref-quality-strings-20k-100bp-ERR2_70-SRR3045231.txt:16978: ADDD ==> ADD
data/r-bioc-rsubread-2.4.2/inst/qualf/ref-quality-strings-20k-100bp-ERR2_70-SRR3045231.txt:16985: BA ==> BY, BE
data/r-bioc-rsubread-2.4.2/inst/qualf/ref-quality-strings-20k-100bp-ERR2_70-SRR3045231.txt:17018: BA ==> BY, BE
data/r-bioc-rsubread-2.4.2/inst/qualf/ref-quality-strings-20k-100bp-ERR2_70-SRR3045231.txt:17025: BA ==> BY, BE
data/r-bioc-rsubread-2.4.2/inst/qualf/ref-quality-strings-20k-100bp-ERR2_70-SRR3045231.txt:17212: BA ==> BY, BE
data/r-bioc-rsubread-2.4.2/inst/qualf/ref-quality-strings-20k-100bp-ERR2_70-SRR3045231.txt:17284: BA ==> BY, BE
data/r-bioc-rsubread-2.4.2/inst/qualf/ref-quality-strings-20k-100bp-ERR2_70-SRR3045231.txt:17388: BA ==> BY, BE
data/r-bioc-rsubread-2.4.2/inst/qualf/ref-quality-strings-20k-100bp-ERR2_70-SRR3045231.txt:17416: BA ==> BY, BE
data/r-bioc-rsubread-2.4.2/inst/qualf/ref-quality-strings-20k-100bp-ERR2_70-SRR3045231.txt:17458: BA ==> BY, BE
data/r-bioc-rsubread-2.4.2/inst/qualf/ref-quality-strings-20k-100bp-ERR2_70-SRR3045231.txt:17521: BA ==> BY, BE
data/r-bioc-rsubread-2.4.2/inst/qualf/ref-quality-strings-20k-100bp-ERR2_70-SRR3045231.txt:17766: BA ==> BY, BE
data/r-bioc-rsubread-2.4.2/inst/qualf/ref-quality-strings-20k-100bp-ERR2_70-SRR3045231.txt:17792: BA ==> BY, BE
data/r-bioc-rsubread-2.4.2/inst/qualf/ref-quality-strings-20k-100bp-ERR2_70-SRR3045231.txt:17837: BA ==> BY, BE
data/r-bioc-rsubread-2.4.2/inst/qualf/ref-quality-strings-20k-100bp-ERR2_70-SRR3045231.txt:17886: BA ==> BY, BE
data/r-bioc-rsubread-2.4.2/inst/qualf/ref-quality-strings-20k-100bp-ERR2_70-SRR3045231.txt:17898: BA ==> BY, BE
data/r-bioc-rsubread-2.4.2/inst/qualf/ref-quality-strings-20k-100bp-ERR2_70-SRR3045231.txt:17956: ADDD ==> ADD
data/r-bioc-rsubread-2.4.2/inst/qualf/ref-quality-strings-20k-100bp-ERR2_70-SRR3045231.txt:18070: BA ==> BY, BE
data/r-bioc-rsubread-2.4.2/inst/qualf/ref-quality-strings-20k-100bp-ERR2_70-SRR3045231.txt:18116: BA ==> BY, BE
data/r-bioc-rsubread-2.4.2/inst/qualf/ref-quality-strings-20k-100bp-ERR2_70-SRR3045231.txt:18182: BA ==> BY, BE
data/r-bioc-rsubread-2.4.2/inst/qualf/ref-quality-strings-20k-100bp-ERR2_70-SRR3045231.txt:18204: BA ==> BY, BE
data/r-bioc-rsubread-2.4.2/inst/qualf/ref-quality-strings-20k-100bp-ERR2_70-SRR3045231.txt:18323: BA ==> BY, BE
data/r-bioc-rsubread-2.4.2/inst/qualf/ref-quality-strings-20k-100bp-ERR2_70-SRR3045231.txt:18349: BA ==> BY, BE
data/r-bioc-rsubread-2.4.2/inst/qualf/ref-quality-strings-20k-100bp-ERR2_70-SRR3045231.txt:18371: BA ==> BY, BE
data/r-bioc-rsubread-2.4.2/inst/qualf/ref-quality-strings-20k-100bp-ERR2_70-SRR3045231.txt:18471: DED ==> DEAD
data/r-bioc-rsubread-2.4.2/inst/qualf/ref-quality-strings-20k-100bp-ERR2_70-SRR3045231.txt:18571: BA ==> BY, BE
data/r-bioc-rsubread-2.4.2/inst/qualf/ref-quality-strings-20k-100bp-ERR2_70-SRR3045231.txt:18638: BA ==> BY, BE
data/r-bioc-rsubread-2.4.2/inst/qualf/ref-quality-strings-20k-100bp-ERR2_70-SRR3045231.txt:18732: BA ==> BY, BE
data/r-bioc-rsubread-2.4.2/inst/qualf/ref-quality-strings-20k-100bp-ERR2_70-SRR3045231.txt:18874: ACI ==> ACPI
data/r-bioc-rsubread-2.4.2/inst/qualf/ref-quality-strings-20k-100bp-ERR2_70-SRR3045231.txt:18937: DAA ==> DATA
data/r-bioc-rsubread-2.4.2/inst/qualf/ref-quality-strings-20k-100bp-ERR2_70-SRR3045231.txt:18937: BA ==> BY, BE
data/r-bioc-rsubread-2.4.2/inst/qualf/ref-quality-strings-20k-100bp-ERR2_70-SRR3045231.txt:19075: BA ==> BY, BE
data/r-bioc-rsubread-2.4.2/inst/qualf/ref-quality-strings-20k-100bp-ERR2_70-SRR3045231.txt:19166: ADDD ==> ADD
data/r-bioc-rsubread-2.4.2/inst/qualf/ref-quality-strings-20k-100bp-ERR2_70-SRR3045231.txt:19231: BA ==> BY, BE
data/r-bioc-rsubread-2.4.2/inst/qualf/ref-quality-strings-20k-100bp-ERR2_70-SRR3045231.txt:19565: ADDD ==> ADD
data/r-bioc-rsubread-2.4.2/inst/qualf/ref-quality-strings-20k-100bp-ERR2_70-SRR3045231.txt:19581: BA ==> BY, BE
data/r-bioc-rsubread-2.4.2/inst/qualf/ref-quality-strings-20k-100bp-ERR2_70-SRR3045231.txt:19582: BA ==> BY, BE
data/r-bioc-rsubread-2.4.2/inst/qualf/ref-quality-strings-20k-100bp-ERR2_70-SRR3045231.txt:19788: BA ==> BY, BE
data/r-bioc-rsubread-2.4.2/inst/qualf/ref-quality-strings-20k-100bp-ERR2_70-SRR3045231.txt:19798: BA ==> BY, BE
data/r-bioc-rsubread-2.4.2/inst/qualf/ref-quality-strings-20k-100bp-ERR2_70-SRR3045231.txt:19799: ADDD ==> ADD
data/r-bioc-rsubread-2.4.2/inst/qualf/ref-quality-strings-20k-100bp-ERR2_70-SRR3045231.txt:19799: BA ==> BY, BE
data/r-bioc-rsubread-2.4.2/inst/qualf/ref-quality-strings-20k-100bp-ERR2_70-SRR3045231.txt:19826: ADDD ==> ADD
data/r-bioc-rsubread-2.4.2/inst/qualf/ref-quality-strings-20k-75bp-ERR1_59-SRR3649332.txt:248: ADGE ==> EDGE, BADGE, ADAGE
data/r-bioc-rsubread-2.4.2/inst/qualf/ref-quality-strings-20k-75bp-ERR1_59-SRR3649332.txt:310: AFE ==> SAFE
data/r-bioc-rsubread-2.4.2/inst/qualf/ref-quality-strings-20k-75bp-ERR1_59-SRR3649332.txt:484: BA ==> BY, BE
data/r-bioc-rsubread-2.4.2/inst/qualf/ref-quality-strings-20k-75bp-ERR1_59-SRR3649332.txt:532: BA ==> BY, BE
data/r-bioc-rsubread-2.4.2/inst/qualf/ref-quality-strings-20k-75bp-ERR1_59-SRR3649332.txt:910: BA ==> BY, BE
data/r-bioc-rsubread-2.4.2/inst/qualf/ref-quality-strings-20k-75bp-ERR1_59-SRR3649332.txt:1261: ADDD ==> ADD
data/r-bioc-rsubread-2.4.2/inst/qualf/ref-quality-strings-20k-75bp-ERR1_59-SRR3649332.txt:1402: EDE ==> EDGE
data/r-bioc-rsubread-2.4.2/inst/qualf/ref-quality-strings-20k-75bp-ERR1_59-SRR3649332.txt:1905: ADDD ==> ADD
data/r-bioc-rsubread-2.4.2/inst/qualf/ref-quality-strings-20k-75bp-ERR1_59-SRR3649332.txt:2102: EDE ==> EDGE
data/r-bioc-rsubread-2.4.2/inst/qualf/ref-quality-strings-20k-75bp-ERR1_59-SRR3649332.txt:2153: ADDD ==> ADD
data/r-bioc-rsubread-2.4.2/inst/qualf/ref-quality-strings-20k-75bp-ERR1_59-SRR3649332.txt:2165: ADDD ==> ADD
data/r-bioc-rsubread-2.4.2/inst/qualf/ref-quality-strings-20k-75bp-ERR1_59-SRR3649332.txt:2493: AFE ==> SAFE
data/r-bioc-rsubread-2.4.2/inst/qualf/ref-quality-strings-20k-75bp-ERR1_59-SRR3649332.txt:2580: BA ==> BY, BE
data/r-bioc-rsubread-2.4.2/inst/qualf/ref-quality-strings-20k-75bp-ERR1_59-SRR3649332.txt:2580: BA ==> BY, BE
data/r-bioc-rsubread-2.4.2/inst/qualf/ref-quality-strings-20k-75bp-ERR1_59-SRR3649332.txt:3345: BA ==> BY, BE
data/r-bioc-rsubread-2.4.2/inst/qualf/ref-quality-strings-20k-75bp-ERR1_59-SRR3649332.txt:3483: BA ==> BY, BE
data/r-bioc-rsubread-2.4.2/inst/qualf/ref-quality-strings-20k-75bp-ERR1_59-SRR3649332.txt:3630: EDE ==> EDGE
data/r-bioc-rsubread-2.4.2/inst/qualf/ref-quality-strings-20k-75bp-ERR1_59-SRR3649332.txt:4001: BA ==> BY, BE
data/r-bioc-rsubread-2.4.2/inst/qualf/ref-quality-strings-20k-75bp-ERR1_59-SRR3649332.txt:4043: BA ==> BY, BE
data/r-bioc-rsubread-2.4.2/inst/qualf/ref-quality-strings-20k-75bp-ERR1_59-SRR3649332.txt:4132: BA ==> BY, BE
data/r-bioc-rsubread-2.4.2/inst/qualf/ref-quality-strings-20k-75bp-ERR1_59-SRR3649332.txt:4505: ADDD ==> ADD
data/r-bioc-rsubread-2.4.2/inst/qualf/ref-quality-strings-20k-75bp-ERR1_59-SRR3649332.txt:4702: DAA ==> DATA
data/r-bioc-rsubread-2.4.2/inst/qualf/ref-quality-strings-20k-75bp-ERR1_59-SRR3649332.txt:4841: BA ==> BY, BE
data/r-bioc-rsubread-2.4.2/inst/qualf/ref-quality-strings-20k-75bp-ERR1_59-SRR3649332.txt:4969: BA ==> BY, BE
data/r-bioc-rsubread-2.4.2/inst/qualf/ref-quality-strings-20k-75bp-ERR1_59-SRR3649332.txt:5096: BA ==> BY, BE
data/r-bioc-rsubread-2.4.2/inst/qualf/ref-quality-strings-20k-75bp-ERR1_59-SRR3649332.txt:5100: AFE ==> SAFE
data/r-bioc-rsubread-2.4.2/inst/qualf/ref-quality-strings-20k-75bp-ERR1_59-SRR3649332.txt:5124: ADDD ==> ADD
data/r-bioc-rsubread-2.4.2/inst/qualf/ref-quality-strings-20k-75bp-ERR1_59-SRR3649332.txt:5149: BA ==> BY, BE
data/r-bioc-rsubread-2.4.2/inst/qualf/ref-quality-strings-20k-75bp-ERR1_59-SRR3649332.txt:5166: BA ==> BY, BE
data/r-bioc-rsubread-2.4.2/inst/qualf/ref-quality-strings-20k-75bp-ERR1_59-SRR3649332.txt:5292: BA ==> BY, BE
data/r-bioc-rsubread-2.4.2/inst/qualf/ref-quality-strings-20k-75bp-ERR1_59-SRR3649332.txt:5457: BA ==> BY, BE
data/r-bioc-rsubread-2.4.2/inst/qualf/ref-quality-strings-20k-75bp-ERR1_59-SRR3649332.txt:5860: BA ==> BY, BE
data/r-bioc-rsubread-2.4.2/inst/qualf/ref-quality-strings-20k-75bp-ERR1_59-SRR3649332.txt:6038: BA ==> BY, BE
data/r-bioc-rsubread-2.4.2/inst/qualf/ref-quality-strings-20k-75bp-ERR1_59-SRR3649332.txt:6151: DED ==> DEAD
data/r-bioc-rsubread-2.4.2/inst/qualf/ref-quality-strings-20k-75bp-ERR1_59-SRR3649332.txt:6306: BA ==> BY, BE
data/r-bioc-rsubread-2.4.2/inst/qualf/ref-quality-strings-20k-75bp-ERR1_59-SRR3649332.txt:6464: ADDD ==> ADD
data/r-bioc-rsubread-2.4.2/inst/qualf/ref-quality-strings-20k-75bp-ERR1_59-SRR3649332.txt:6503: BA ==> BY, BE
data/r-bioc-rsubread-2.4.2/inst/qualf/ref-quality-strings-20k-75bp-ERR1_59-SRR3649332.txt:6582: BA ==> BY, BE
data/r-bioc-rsubread-2.4.2/inst/qualf/ref-quality-strings-20k-75bp-ERR1_59-SRR3649332.txt:6668: BA ==> BY, BE
data/r-bioc-rsubread-2.4.2/inst/qualf/ref-quality-strings-20k-75bp-ERR1_59-SRR3649332.txt:6867: BA ==> BY, BE
data/r-bioc-rsubread-2.4.2/inst/qualf/ref-quality-strings-20k-75bp-ERR1_59-SRR3649332.txt:7208: ADDD ==> ADD
data/r-bioc-rsubread-2.4.2/inst/qualf/ref-quality-strings-20k-75bp-ERR1_59-SRR3649332.txt:7335: ADDD ==> ADD
data/r-bioc-rsubread-2.4.2/inst/qualf/ref-quality-strings-20k-75bp-ERR1_59-SRR3649332.txt:7431: BA ==> BY, BE
data/r-bioc-rsubread-2.4.2/inst/qualf/ref-quality-strings-20k-75bp-ERR1_59-SRR3649332.txt:7525: DAA ==> DATA
data/r-bioc-rsubread-2.4.2/inst/qualf/ref-quality-strings-20k-75bp-ERR1_59-SRR3649332.txt:7525: CAHCE ==> CACHE
data/r-bioc-rsubread-2.4.2/inst/qualf/ref-quality-strings-20k-75bp-ERR1_59-SRR3649332.txt:8114: BA ==> BY, BE
data/r-bioc-rsubread-2.4.2/inst/qualf/ref-quality-strings-20k-75bp-ERR1_59-SRR3649332.txt:8134: BA ==> BY, BE
data/r-bioc-rsubread-2.4.2/inst/qualf/ref-quality-strings-20k-75bp-ERR1_59-SRR3649332.txt:8158: CACE ==> CACHE
data/r-bioc-rsubread-2.4.2/inst/qualf/ref-quality-strings-20k-75bp-ERR1_59-SRR3649332.txt:8173: BA ==> BY, BE
data/r-bioc-rsubread-2.4.2/inst/qualf/ref-quality-strings-20k-75bp-ERR1_59-SRR3649332.txt:8398: AADD ==> ADD
data/r-bioc-rsubread-2.4.2/inst/qualf/ref-quality-strings-20k-75bp-ERR1_59-SRR3649332.txt:8496: BA ==> BY, BE
data/r-bioc-rsubread-2.4.2/inst/qualf/ref-quality-strings-20k-75bp-ERR1_59-SRR3649332.txt:8523: BA ==> BY, BE
data/r-bioc-rsubread-2.4.2/inst/qualf/ref-quality-strings-20k-75bp-ERR1_59-SRR3649332.txt:8755: DED ==> DEAD
data/r-bioc-rsubread-2.4.2/inst/qualf/ref-quality-strings-20k-75bp-ERR1_59-SRR3649332.txt:8859: DAA ==> DATA
data/r-bioc-rsubread-2.4.2/inst/qualf/ref-quality-strings-20k-75bp-ERR1_59-SRR3649332.txt:8864: AFE ==> SAFE
data/r-bioc-rsubread-2.4.2/inst/qualf/ref-quality-strings-20k-75bp-ERR1_59-SRR3649332.txt:8999: BA ==> BY, BE
data/r-bioc-rsubread-2.4.2/inst/qualf/ref-quality-strings-20k-75bp-ERR1_59-SRR3649332.txt:9146: BA ==> BY, BE
data/r-bioc-rsubread-2.4.2/inst/qualf/ref-quality-strings-20k-75bp-ERR1_59-SRR3649332.txt:9197: BA ==> BY, BE
data/r-bioc-rsubread-2.4.2/inst/qualf/ref-quality-strings-20k-75bp-ERR1_59-SRR3649332.txt:9322: BA ==> BY, BE
data/r-bioc-rsubread-2.4.2/inst/qualf/ref-quality-strings-20k-75bp-ERR1_59-SRR3649332.txt:9342: BA ==> BY, BE
data/r-bioc-rsubread-2.4.2/inst/qualf/ref-quality-strings-20k-75bp-ERR1_59-SRR3649332.txt:9563: ADDD ==> ADD
data/r-bioc-rsubread-2.4.2/inst/qualf/ref-quality-strings-20k-75bp-ERR1_59-SRR3649332.txt:9894: ADDD ==> ADD
data/r-bioc-rsubread-2.4.2/inst/qualf/ref-quality-strings-20k-75bp-ERR1_59-SRR3649332.txt:9913: DED ==> DEAD
data/r-bioc-rsubread-2.4.2/inst/qualf/ref-quality-strings-20k-75bp-ERR1_59-SRR3649332.txt:10097: BA ==> BY, BE
data/r-bioc-rsubread-2.4.2/inst/qualf/ref-quality-strings-20k-75bp-ERR1_59-SRR3649332.txt:10449: BA ==> BY, BE
data/r-bioc-rsubread-2.4.2/inst/qualf/ref-quality-strings-20k-75bp-ERR1_59-SRR3649332.txt:10602: BA ==> BY, BE
data/r-bioc-rsubread-2.4.2/inst/qualf/ref-quality-strings-20k-75bp-ERR1_59-SRR3649332.txt:10709: EGE ==> EDGE
data/r-bioc-rsubread-2.4.2/inst/qualf/ref-quality-strings-20k-75bp-ERR1_59-SRR3649332.txt:10737: BA ==> BY, BE
data/r-bioc-rsubread-2.4.2/inst/qualf/ref-quality-strings-20k-75bp-ERR1_59-SRR3649332.txt:10769: BA ==> BY, BE
data/r-bioc-rsubread-2.4.2/inst/qualf/ref-quality-strings-20k-75bp-ERR1_59-SRR3649332.txt:10838: BA ==> BY, BE
data/r-bioc-rsubread-2.4.2/inst/qualf/ref-quality-strings-20k-75bp-ERR1_59-SRR3649332.txt:10916: BA ==> BY, BE
data/r-bioc-rsubread-2.4.2/inst/qualf/ref-quality-strings-20k-75bp-ERR1_59-SRR3649332.txt:10957: DAA ==> DATA
data/r-bioc-rsubread-2.4.2/inst/qualf/ref-quality-strings-20k-75bp-ERR1_59-SRR3649332.txt:11066: BA ==> BY, BE
data/r-bioc-rsubread-2.4.2/inst/qualf/ref-quality-strings-20k-75bp-ERR1_59-SRR3649332.txt:11111: BA ==> BY, BE
data/r-bioc-rsubread-2.4.2/inst/qualf/ref-quality-strings-20k-75bp-ERR1_59-SRR3649332.txt:11228: BA ==> BY, BE
data/r-bioc-rsubread-2.4.2/inst/qualf/ref-quality-strings-20k-75bp-ERR1_59-SRR3649332.txt:11295: DED ==> DEAD
data/r-bioc-rsubread-2.4.2/inst/qualf/ref-quality-strings-20k-75bp-ERR1_59-SRR3649332.txt:11559: BA ==> BY, BE
data/r-bioc-rsubread-2.4.2/inst/qualf/ref-quality-strings-20k-75bp-ERR1_59-SRR3649332.txt:11673: BA ==> BY, BE
data/r-bioc-rsubread-2.4.2/inst/qualf/ref-quality-strings-20k-75bp-ERR1_59-SRR3649332.txt:11773: BA ==> BY, BE
data/r-bioc-rsubread-2.4.2/inst/qualf/ref-quality-strings-20k-75bp-ERR1_59-SRR3649332.txt:11936: BA ==> BY, BE
data/r-bioc-rsubread-2.4.2/inst/qualf/ref-quality-strings-20k-75bp-ERR1_59-SRR3649332.txt:11940: CACE ==> CACHE
data/r-bioc-rsubread-2.4.2/inst/qualf/ref-quality-strings-20k-75bp-ERR1_59-SRR3649332.txt:11974: HGE ==> HE
data/r-bioc-rsubread-2.4.2/inst/qualf/ref-quality-strings-20k-75bp-ERR1_59-SRR3649332.txt:12019: AFE ==> SAFE
data/r-bioc-rsubread-2.4.2/inst/qualf/ref-quality-strings-20k-75bp-ERR1_59-SRR3649332.txt:12075: ADDD ==> ADD
data/r-bioc-rsubread-2.4.2/inst/qualf/ref-quality-strings-20k-75bp-ERR1_59-SRR3649332.txt:12103: BA ==> BY, BE
data/r-bioc-rsubread-2.4.2/inst/qualf/ref-quality-strings-20k-75bp-ERR1_59-SRR3649332.txt:12270: BA ==> BY, BE
data/r-bioc-rsubread-2.4.2/inst/qualf/ref-quality-strings-20k-75bp-ERR1_59-SRR3649332.txt:12366: AFE ==> SAFE
data/r-bioc-rsubread-2.4.2/inst/qualf/ref-quality-strings-20k-75bp-ERR1_59-SRR3649332.txt:12710: BA ==> BY, BE
data/r-bioc-rsubread-2.4.2/inst/qualf/ref-quality-strings-20k-75bp-ERR1_59-SRR3649332.txt:12727: DED ==> DEAD
data/r-bioc-rsubread-2.4.2/inst/qualf/ref-quality-strings-20k-75bp-ERR1_59-SRR3649332.txt:12781: BA ==> BY, BE
data/r-bioc-rsubread-2.4.2/inst/qualf/ref-quality-strings-20k-75bp-ERR1_59-SRR3649332.txt:13150: BA ==> BY, BE
data/r-bioc-rsubread-2.4.2/inst/qualf/ref-quality-strings-20k-75bp-ERR1_59-SRR3649332.txt:13237: BA ==> BY, BE
data/r-bioc-rsubread-2.4.2/inst/qualf/ref-quality-strings-20k-75bp-ERR1_59-SRR3649332.txt:13649: BA ==> BY, BE
data/r-bioc-rsubread-2.4.2/inst/qualf/ref-quality-strings-20k-75bp-ERR1_59-SRR3649332.txt:13816: BA ==> BY, BE
data/r-bioc-rsubread-2.4.2/inst/qualf/ref-quality-strings-20k-75bp-ERR1_59-SRR3649332.txt:13888: BA ==> BY, BE
data/r-bioc-rsubread-2.4.2/inst/qualf/ref-quality-strings-20k-75bp-ERR1_59-SRR3649332.txt:13995: BA ==> BY, BE
data/r-bioc-rsubread-2.4.2/inst/qualf/ref-quality-strings-20k-75bp-ERR1_59-SRR3649332.txt:14086: ADDD ==> ADD
data/r-bioc-rsubread-2.4.2/inst/qualf/ref-quality-strings-20k-75bp-ERR1_59-SRR3649332.txt:14236: BA ==> BY, BE
data/r-bioc-rsubread-2.4.2/inst/qualf/ref-quality-strings-20k-75bp-ERR1_59-SRR3649332.txt:14316: DAA ==> DATA
data/r-bioc-rsubread-2.4.2/inst/qualf/ref-quality-strings-20k-75bp-ERR1_59-SRR3649332.txt:14443: BA ==> BY, BE
data/r-bioc-rsubread-2.4.2/inst/qualf/ref-quality-strings-20k-75bp-ERR1_59-SRR3649332.txt:14518: ADDD ==> ADD
data/r-bioc-rsubread-2.4.2/inst/qualf/ref-quality-strings-20k-75bp-ERR1_59-SRR3649332.txt:14640: ADDD ==> ADD
data/r-bioc-rsubread-2.4.2/inst/qualf/ref-quality-strings-20k-75bp-ERR1_59-SRR3649332.txt:14791: DAA ==> DATA
data/r-bioc-rsubread-2.4.2/inst/qualf/ref-quality-strings-20k-75bp-ERR1_59-SRR3649332.txt:14875: BA ==> BY, BE
data/r-bioc-rsubread-2.4.2/inst/qualf/ref-quality-strings-20k-75bp-ERR1_59-SRR3649332.txt:14984: BA ==> BY, BE
data/r-bioc-rsubread-2.4.2/inst/qualf/ref-quality-strings-20k-75bp-ERR1_59-SRR3649332.txt:15064: BA ==> BY, BE
data/r-bioc-rsubread-2.4.2/inst/qualf/ref-quality-strings-20k-75bp-ERR1_59-SRR3649332.txt:15165: ADDD ==> ADD
data/r-bioc-rsubread-2.4.2/inst/qualf/ref-quality-strings-20k-75bp-ERR1_59-SRR3649332.txt:15210: ADDD ==> ADD
data/r-bioc-rsubread-2.4.2/inst/qualf/ref-quality-strings-20k-75bp-ERR1_59-SRR3649332.txt:15342: BA ==> BY, BE
data/r-bioc-rsubread-2.4.2/inst/qualf/ref-quality-strings-20k-75bp-ERR1_59-SRR3649332.txt:15489: BA ==> BY, BE
data/r-bioc-rsubread-2.4.2/inst/qualf/ref-quality-strings-20k-75bp-ERR1_59-SRR3649332.txt:15580: BA ==> BY, BE
data/r-bioc-rsubread-2.4.2/inst/qualf/ref-quality-strings-20k-75bp-ERR1_59-SRR3649332.txt:15658: BA ==> BY, BE
data/r-bioc-rsubread-2.4.2/inst/qualf/ref-quality-strings-20k-75bp-ERR1_59-SRR3649332.txt:16034: BA ==> BY, BE
data/r-bioc-rsubread-2.4.2/inst/qualf/ref-quality-strings-20k-75bp-ERR1_59-SRR3649332.txt:16304: ADDD ==> ADD
data/r-bioc-rsubread-2.4.2/inst/qualf/ref-quality-strings-20k-75bp-ERR1_59-SRR3649332.txt:16380: DED ==> DEAD
data/r-bioc-rsubread-2.4.2/inst/qualf/ref-quality-strings-20k-75bp-ERR1_59-SRR3649332.txt:16411: BA ==> BY, BE
data/r-bioc-rsubread-2.4.2/inst/qualf/ref-quality-strings-20k-75bp-ERR1_59-SRR3649332.txt:16541: DAA ==> DATA
data/r-bioc-rsubread-2.4.2/inst/qualf/ref-quality-strings-20k-75bp-ERR1_59-SRR3649332.txt:16695: AADD ==> ADD
data/r-bioc-rsubread-2.4.2/inst/qualf/ref-quality-strings-20k-75bp-ERR1_59-SRR3649332.txt:17036: BA ==> BY, BE
data/r-bioc-rsubread-2.4.2/inst/qualf/ref-quality-strings-20k-75bp-ERR1_59-SRR3649332.txt:17452: BA ==> BY, BE
data/r-bioc-rsubread-2.4.2/inst/qualf/ref-quality-strings-20k-75bp-ERR1_59-SRR3649332.txt:17465: DAA ==> DATA
data/r-bioc-rsubread-2.4.2/inst/qualf/ref-quality-strings-20k-75bp-ERR1_59-SRR3649332.txt:17559: BA ==> BY, BE
data/r-bioc-rsubread-2.4.2/inst/qualf/ref-quality-strings-20k-75bp-ERR1_59-SRR3649332.txt:17838: BA ==> BY, BE
data/r-bioc-rsubread-2.4.2/inst/qualf/ref-quality-strings-20k-75bp-ERR1_59-SRR3649332.txt:17852: DAA ==> DATA
data/r-bioc-rsubread-2.4.2/inst/qualf/ref-quality-strings-20k-75bp-ERR1_59-SRR3649332.txt:17855: BA ==> BY, BE
data/r-bioc-rsubread-2.4.2/inst/qualf/ref-quality-strings-20k-75bp-ERR1_59-SRR3649332.txt:17881: BA ==> BY, BE
data/r-bioc-rsubread-2.4.2/inst/qualf/ref-quality-strings-20k-75bp-ERR1_59-SRR3649332.txt:17884: ADDD ==> ADD
data/r-bioc-rsubread-2.4.2/inst/qualf/ref-quality-strings-20k-75bp-ERR1_59-SRR3649332.txt:18045: CCHE ==> CACHE
data/r-bioc-rsubread-2.4.2/inst/qualf/ref-quality-strings-20k-75bp-ERR1_59-SRR3649332.txt:18067: ADDD ==> ADD
data/r-bioc-rsubread-2.4.2/inst/qualf/ref-quality-strings-20k-75bp-ERR1_59-SRR3649332.txt:18360: ADDD ==> ADD
data/r-bioc-rsubread-2.4.2/inst/qualf/ref-quality-strings-20k-75bp-ERR1_59-SRR3649332.txt:18578: EDE ==> EDGE
data/r-bioc-rsubread-2.4.2/inst/qualf/ref-quality-strings-20k-75bp-ERR1_59-SRR3649332.txt:18656: BA ==> BY, BE
data/r-bioc-rsubread-2.4.2/inst/qualf/ref-quality-strings-20k-75bp-ERR1_59-SRR3649332.txt:18778: ADDD ==> ADD
data/r-bioc-rsubread-2.4.2/inst/qualf/ref-quality-strings-20k-75bp-ERR1_59-SRR3649332.txt:19368: BA ==> BY, BE
data/r-bioc-rsubread-2.4.2/inst/qualf/ref-quality-strings-20k-75bp-ERR1_59-SRR3649332.txt:19434: AFE ==> SAFE
data/r-bioc-rsubread-2.4.2/inst/qualf/ref-quality-strings-20k-75bp-ERR1_59-SRR3649332.txt:19451: BA ==> BY, BE
data/r-bioc-rsubread-2.4.2/inst/qualf/ref-quality-strings-20k-75bp-ERR1_59-SRR3649332.txt:19472: DED ==> DEAD
data/r-bioc-rsubread-2.4.2/inst/qualf/ref-quality-strings-20k-75bp-ERR1_59-SRR3649332.txt:19493: BA ==> BY, BE
data/r-bioc-rsubread-2.4.2/inst/qualf/ref-quality-strings-20k-75bp-ERR1_59-SRR3649332.txt:19702: BA ==> BY, BE
data/r-bioc-rsubread-2.4.2/inst/qualf/ref-quality-strings-20k-75bp-ERR1_59-SRR3649332.txt:19789: BA ==> BY, BE
data/r-bioc-rsubread-2.4.2/inst/qualf/ref-quality-strings-20k-75bp-ERR1_59-SRR3649332.txt:19789: BA ==> BY, BE
data/r-bioc-rsubread-2.4.2/man/align.Rd:159: threhold ==> threshold
data/r-bioc-rsubread-2.4.2/man/buildindex.Rd:21: charater ==> character
data/r-bioc-rsubread-2.4.2/man/buildindex.Rd:73: artifical ==> artificial
data/r-bioc-rsubread-2.4.2/man/detectionCall.Rd:15: specifing ==> specifying
data/r-bioc-rsubread-2.4.2/man/featureCounts.Rd:93: assiged ==> assigned
data/r-bioc-rsubread-2.4.2/man/featureCounts.Rd:119: appliable ==> applicable
data/r-bioc-rsubread-2.4.2/man/featureCounts.Rd:120: satisify ==> satisfy
data/r-bioc-rsubread-2.4.2/man/featureCounts.Rd:120: appliable ==> applicable
data/r-bioc-rsubread-2.4.2/man/featureCounts.Rd:166: faciliate ==> facilitate
data/r-bioc-rsubread-2.4.2/man/featureCounts.Rd:179: provdied ==> provided
data/r-bioc-rsubread-2.4.2/man/processExons.Rd:3: Coordiates ==> Coordinates
data/r-bioc-rsubread-2.4.2/man/promoterRegions.Rd:14: inclued ==> included
data/r-bioc-rsubread-2.4.2/man/promoterRegions.Rd:15: inclued ==> included
data/r-bioc-rsubread-2.4.2/src/HelperFunctions.c:1809: retreived ==> retrieved
data/r-bioc-rsubread-2.4.2/src/HelperFunctions.c:2690: Hel ==> Help, hell, heal
data/r-bioc-rsubread-2.4.2/src/HelperFunctions.h:133: retrived ==> retrieved
data/r-bioc-rsubread-2.4.2/src/HelperFunctions.h:143: constitues ==> constitutes
data/r-bioc-rsubread-2.4.2/src/LRMchro-event.c:84: te ==> the, be, we
data/r-bioc-rsubread-2.4.2/src/LRMchro-event.c:118: te ==> the, be, we
data/r-bioc-rsubread-2.4.2/src/LRMchro-event.c:178: te ==> the, be, we
data/r-bioc-rsubread-2.4.2/src/LRMchro-event.c:179: te ==> the, be, we
data/r-bioc-rsubread-2.4.2/src/LRMchro-event.c:185: te ==> the, be, we
data/r-bioc-rsubread-2.4.2/src/LRMchro-event.c:185: te ==> the, be, we
data/r-bioc-rsubread-2.4.2/src/LRMchro-event.c:221: thise ==> these, this
data/r-bioc-rsubread-2.4.2/src/LRMchro-event.c:222: thise ==> these, this
data/r-bioc-rsubread-2.4.2/src/LRMchro-event.c:223: thise ==> these, this
data/r-bioc-rsubread-2.4.2/src/LRMseek-zlib.c:200: TRE ==> TREE
data/r-bioc-rsubread-2.4.2/src/SNPCalling.c:243: inclued ==> included
data/r-bioc-rsubread-2.4.2/src/SNPCalling.c:423: inclued ==> included
data/r-bioc-rsubread-2.4.2/src/SNPCalling.c:1488: immediatly ==> immediately
data/r-bioc-rsubread-2.4.2/src/SNPCalling.c:1713: unparseable ==> unparsable
data/r-bioc-rsubread-2.4.2/src/core-indel.c:1087: thn ==> then
data/r-bioc-rsubread-2.4.2/src/core-indel.c:1089: thn ==> then
data/r-bioc-rsubread-2.4.2/src/core-indel.c:1089: thn ==> then
data/r-bioc-rsubread-2.4.2/src/core-indel.c:1089: thn ==> then
data/r-bioc-rsubread-2.4.2/src/core-indel.c:1090: thn ==> then
data/r-bioc-rsubread-2.4.2/src/core-indel.c:1098: thn ==> then
data/r-bioc-rsubread-2.4.2/src/core-indel.c:1183: thn ==> then
data/r-bioc-rsubread-2.4.2/src/core-indel.c:1183: thn ==> then
data/r-bioc-rsubread-2.4.2/src/core-indel.c:1183: thn ==> then
data/r-bioc-rsubread-2.4.2/src/core-indel.c:1184: thn ==> then
data/r-bioc-rsubread-2.4.2/src/core-indel.c:1210: thn ==> then
data/r-bioc-rsubread-2.4.2/src/core-indel.c:1212: thn ==> then
data/r-bioc-rsubread-2.4.2/src/core-indel.c:1212: thn ==> then
data/r-bioc-rsubread-2.4.2/src/core-indel.c:1212: thn ==> then
data/r-bioc-rsubread-2.4.2/src/core-indel.c:1213: thn ==> then
data/r-bioc-rsubread-2.4.2/src/core-indel.c:1656: MAPP ==> MAP
data/r-bioc-rsubread-2.4.2/src/core-indel.c:1672: negativ ==> negative
data/r-bioc-rsubread-2.4.2/src/core-indel.c:2157: COMMEN ==> COMMEND, COMMENT, COMMON
data/r-bioc-rsubread-2.4.2/src/core-junction.c:329: explainations ==> explanations
data/r-bioc-rsubread-2.4.2/src/core-junction.c:478: explainations ==> explanations
data/r-bioc-rsubread-2.4.2/src/core-junction.c:1326: differnet ==> different
data/r-bioc-rsubread-2.4.2/src/core-junction.c:2861: bondary ==> boundary
data/r-bioc-rsubread-2.4.2/src/core-junction.c:5285: everytime ==> every time
data/r-bioc-rsubread-2.4.2/src/core-junction.h:92: poping ==> popping, pooping
data/r-bioc-rsubread-2.4.2/src/core.c:76: argumant ==> argument
data/r-bioc-rsubread-2.4.2/src/core.c:82: argumant ==> argument
data/r-bioc-rsubread-2.4.2/src/core.c:95: argumant ==> argument
data/r-bioc-rsubread-2.4.2/src/core.c:101: argumant ==> argument
data/r-bioc-rsubread-2.4.2/src/core.c:113: argumant ==> argument
data/r-bioc-rsubread-2.4.2/src/core.c:2314: deleteion ==> deletion
data/r-bioc-rsubread-2.4.2/src/core.c:2937: Occurance ==> Occurrence
data/r-bioc-rsubread-2.4.2/src/core.c:3705: writting ==> writing
data/r-bioc-rsubread-2.4.2/src/core.h:321: applys ==> applies
data/r-bioc-rsubread-2.4.2/src/core.h:322: applys ==> applies
data/r-bioc-rsubread-2.4.2/src/core.h:475: deside ==> decide
data/r-bioc-rsubread-2.4.2/src/core.h:629: writen ==> written
data/r-bioc-rsubread-2.4.2/src/detectionCallAnnotation.c:359: finsihed ==> finished
data/r-bioc-rsubread-2.4.2/src/gen_rand_reads.c:353: aovid ==> avoid
data/r-bioc-rsubread-2.4.2/src/gen_rand_reads.c:434: arbitratry ==> arbitrary
data/r-bioc-rsubread-2.4.2/src/hashtable.h:79: minumum ==> minimum
data/r-bioc-rsubread-2.4.2/src/input-blc.c:342: fpr ==> for, far, fps
data/r-bioc-rsubread-2.4.2/src/input-blc.c:343: fpr ==> for, far, fps
data/r-bioc-rsubread-2.4.2/src/input-files.c:3028: THID ==> THIS
data/r-bioc-rsubread-2.4.2/src/input-files.c:3351: eles ==> else
data/r-bioc-rsubread-2.4.2/src/input-files.c:3379: eles ==> else
data/r-bioc-rsubread-2.4.2/src/input-files.c:3390: eles ==> else
data/r-bioc-rsubread-2.4.2/src/input-files.c:4382: ELES ==> ELSE
data/r-bioc-rsubread-2.4.2/src/input-files.c:6173: tHI ==> the, this
data/r-bioc-rsubread-2.4.2/src/input-files.h:246: flie ==> file
data/r-bioc-rsubread-2.4.2/src/longread-mapping.c:277: bewteen ==> between
data/r-bioc-rsubread-2.4.2/src/longread-mapping.c:348: thid ==> this
data/r-bioc-rsubread-2.4.2/src/longread-mapping.c:352: thid ==> this
data/r-bioc-rsubread-2.4.2/src/propmapped.c:441: ELES ==> ELSE
data/r-bioc-rsubread-2.4.2/src/readSummary.c:1088: REALL ==> REAL, REALLY
data/r-bioc-rsubread-2.4.2/src/readSummary.c:2048: tHI ==> the, this
data/r-bioc-rsubread-2.4.2/src/readSummary.c:2129: sction ==> section, suction
data/r-bioc-rsubread-2.4.2/src/readSummary.c:3650: thi ==> the, this
data/r-bioc-rsubread-2.4.2/src/readSummary.c:3651: thi ==> the, this
data/r-bioc-rsubread-2.4.2/src/readSummary.c:3651: thi ==> the, this
data/r-bioc-rsubread-2.4.2/src/readSummary.c:3651: thi ==> the, this
data/r-bioc-rsubread-2.4.2/src/readSummary.c:3652: thi ==> the, this
data/r-bioc-rsubread-2.4.2/src/readSummary.c:4193: ommited ==> omitted
data/r-bioc-rsubread-2.4.2/src/readSummary.c:4905: thrid ==> third
data/r-bioc-rsubread-2.4.2/src/readSummary.c:4906: thrid ==> third
data/r-bioc-rsubread-2.4.2/src/readSummary.c:4906: thrid ==> third
data/r-bioc-rsubread-2.4.2/src/readSummary.c:4906: thrid ==> third
data/r-bioc-rsubread-2.4.2/src/readSummary.c:4907: thrid ==> third
data/r-bioc-rsubread-2.4.2/src/readSummary.c:4908: thrid ==> third
data/r-bioc-rsubread-2.4.2/src/readSummary.c:4909: thrid ==> third
data/r-bioc-rsubread-2.4.2/src/readSummary.c:6927: allowd ==> allowed, allow, allows
data/r-bioc-rsubread-2.4.2/src/readSummary.c:6940: caculated ==> calculated
data/r-bioc-rsubread-2.4.2/src/readSummary.c:8041: Invalide ==> Invalid
data/r-bioc-rsubread-2.4.2/src/readSummary.c:8214: dosn't ==> doesn't
data/r-bioc-rsubread-2.4.2/src/removeDupReads.c:277: temperary ==> temporary
data/r-bioc-rsubread-2.4.2/src/sambam-file.c:22: Specication ==> Specification
data/r-bioc-rsubread-2.4.2/src/sambam-file.c:209: Unknwon ==> Unknown
data/r-bioc-rsubread-2.4.2/src/sambam-file.h:216: commitable ==> committable
data/r-bioc-rsubread-2.4.2/src/seek-zlib.c:277: concatinated ==> concatenated
data/r-bioc-rsubread-2.4.2/src/sorted-hashtable.c:308: occurance ==> occurrence
data/r-bioc-rsubread-2.4.2/src/sorted-hashtable.c:315: occurance ==> occurrence
data/r-bioc-rsubread-2.4.2/src/sorted-hashtable.c:317: occurance ==> occurrence
data/r-bioc-rsubread-2.4.2/src/sorted-hashtable.c:322: occurance ==> occurrence
data/r-bioc-rsubread-2.4.2/src/sorted-hashtable.c:323: occurance ==> occurrence
data/r-bioc-rsubread-2.4.2/src/sorted-hashtable.c:327: occurance ==> occurrence
data/r-bioc-rsubread-2.4.2/src/sorted-hashtable.c:332: occurance ==> occurrence
data/r-bioc-rsubread-2.4.2/src/sorted-hashtable.h:48: occured ==> occurred
data/r-bioc-rsubread-2.4.2/src/sorted-hashtable.h:56: existance ==> existence
data/r-bioc-rsubread-2.4.2/src/sublog.c:34: ocur ==> occur
data/r-bioc-rsubread-2.4.2/src/sublog.c:50: ocur ==> occur
data/r-bioc-rsubread-2.4.2/src/sublog.c:51: ocur ==> occur
data/r-bioc-rsubread-2.4.2/src/sublog.c:52: ocur ==> occur
data/r-bioc-rsubread-2.4.2/src/sublog.c:59: ocur ==> occur
data/r-bioc-rsubread-2.4.2/debian/copyright:21: retreived ==> retrieved