data/r-bioc-shortread-1.48.0/NEWS:430: occurences ==> occurrences
data/r-bioc-shortread-1.48.0/NEWS:431: occurence ==> occurrence
data/r-bioc-shortread-1.48.0/R/AllClasses-Base.R:115: nubmer ==> number
data/r-bioc-shortread-1.48.0/R/AllClasses-Base.R:116: nubmer ==> number
data/r-bioc-shortread-1.48.0/R/AllUtilities.R:51: arugment ==> argument
data/r-bioc-shortread-1.48.0/R/Snapshot.R:64: viwer ==> viewer
data/r-bioc-shortread-1.48.0/R/Snapshot.R:154: wether ==> weather, whether
data/r-bioc-shortread-1.48.0/R/Snapshot.R:162: wether ==> weather, whether
data/r-bioc-shortread-1.48.0/R/Snapshot.R:191: fiels ==> feels, fields, files, phials
data/r-bioc-shortread-1.48.0/R/Snapshot.R:200: arguement ==> argument
data/r-bioc-shortread-1.48.0/R/Snapshot.R:248: fiels ==> feels, fields, files, phials
data/r-bioc-shortread-1.48.0/R/Snapshot.R:327: swith ==> switch
data/r-bioc-shortread-1.48.0/R/Snapshot.R:339: viwer ==> viewer
data/r-bioc-shortread-1.48.0/R/Snapshot.R:485: Orginal ==> Original
data/r-bioc-shortread-1.48.0/R/methods-AlignedRead.R:163: alignemnts ==> alignments
data/r-bioc-shortread-1.48.0/R/methods-AlignedRead.R:172: indicies ==> indices
data/r-bioc-shortread-1.48.0/R/methods-QA.R:629: Cummulative ==> Cumulative
data/r-bioc-shortread-1.48.0/R/methods-SolexaExportQA.R:257: hist ==> heist, his
data/r-bioc-shortread-1.48.0/R/methods-SolexaExportQA.R:264: hist ==> heist, his
data/r-bioc-shortread-1.48.0/R/qa_utilities.R:225: alph ==> alpha
data/r-bioc-shortread-1.48.0/R/qa_utilities.R:226: alph ==> alpha
data/r-bioc-shortread-1.48.0/R/qa_utilities.R:227: alph ==> alpha
data/r-bioc-shortread-1.48.0/R/qa_utilities.R:227: alph ==> alpha
data/r-bioc-shortread-1.48.0/R/qa_utilities.R:228: alph ==> alpha
data/r-bioc-shortread-1.48.0/R/qa_utilities.R:228: alph ==> alpha
data/r-bioc-shortread-1.48.0/R/spViewPerFeature.R:42: sigle ==> single, sigil
data/r-bioc-shortread-1.48.0/inst/doc/Overview.Rnw:403: aligment ==> alignment
data/r-bioc-shortread-1.48.0/inst/extdata/Data/C1-36Firecrest/Bustard/GERALD/s_1_sequence.txt:448: EYT ==> YET
data/r-bioc-shortread-1.48.0/inst/template/1000-Overview.html:11: refered ==> referred
data/r-bioc-shortread-1.48.0/inst/template/QAFiltered.html:5: avaialable ==> available
data/r-bioc-shortread-1.48.0/inst/template/QAQualityUse.html:6: cummulative ==> cumulative
data/r-bioc-shortread-1.48.0/inst/template/qa_solexa.Rnw:29: refered ==> referred
data/r-bioc-shortread-1.48.0/inst/template/qa_solexa.Rnw:94: migth ==> might
data/r-bioc-shortread-1.48.0/inst/unitTests/test_functions.R:134: nd ==> and, 2nd
data/r-bioc-shortread-1.48.0/inst/unitTests/test_functions.R:134: te ==> the, be, we
data/r-bioc-shortread-1.48.0/inst/unitTests/test_functions.R:135: nd ==> and, 2nd
data/r-bioc-shortread-1.48.0/inst/unitTests/test_functions.R:135: te ==> the, be, we
data/r-bioc-shortread-1.48.0/inst/unitTests/test_functions.R:136: nd ==> and, 2nd
data/r-bioc-shortread-1.48.0/inst/unitTests/test_functions.R:136: te ==> the, be, we
data/r-bioc-shortread-1.48.0/inst/unitTests/test_functions.R:137: nd ==> and, 2nd
data/r-bioc-shortread-1.48.0/inst/unitTests/test_functions.R:137: te ==> the, be, we
data/r-bioc-shortread-1.48.0/inst/unitTests/test_functions.R:140: nd ==> and, 2nd
data/r-bioc-shortread-1.48.0/inst/unitTests/test_functions.R:140: te ==> the, be, we
data/r-bioc-shortread-1.48.0/inst/unitTests/test_functions.R:143: nd ==> and, 2nd
data/r-bioc-shortread-1.48.0/inst/unitTests/test_functions.R:143: te ==> the, be, we
data/r-bioc-shortread-1.48.0/inst/unitTests/cases/s_1_sequence.txt:448: EYT ==> YET
data/r-bioc-shortread-1.48.0/man/AlignedRead-class.Rd:57: alignemnts ==> alignments
data/r-bioc-shortread-1.48.0/man/QualityScore-class.Rd:243: subseqent ==> subsequent
data/r-bioc-shortread-1.48.0/man/Sampler-class.Rd:93: indicies ==> indices
data/r-bioc-shortread-1.48.0/man/ShortReadQ-class.Rd:156: subseqent ==> subsequent
data/r-bioc-shortread-1.48.0/man/SolexaPath-class.Rd:166: fileds ==> fields
data/r-bioc-shortread-1.48.0/man/polyn.Rd:1: Utilites ==> Utilities
data/r-bioc-shortread-1.48.0/man/qa.Rd:59: evalutation ==> evaluation
data/r-bioc-shortread-1.48.0/man/qa2.Rd:220: occuring ==> occurring
data/r-bioc-shortread-1.48.0/man/qa2.Rd:229: occuring ==> occurring
data/r-bioc-shortread-1.48.0/man/readFastq.Rd:24: nubmer ==> number
data/r-bioc-shortread-1.48.0/man/readIntensities.Rd:41: folling ==> following, falling, rolling
data/r-bioc-shortread-1.48.0/man/spViewPerFeature.Rd:24: Charactor ==> Character
data/r-bioc-shortread-1.48.0/man/srduplicated.Rd:81: seqeunce ==> sequence
data/r-bioc-shortread-1.48.0/src/alphabet.c:19: ans ==> and
data/r-bioc-shortread-1.48.0/src/alphabet.c:20: ans ==> and
data/r-bioc-shortread-1.48.0/src/alphabet.c:28: ans ==> and
data/r-bioc-shortread-1.48.0/src/alphabet.c:31: ans ==> and
data/r-bioc-shortread-1.48.0/src/alphabet.c:32: ans ==> and
data/r-bioc-shortread-1.48.0/src/alphabet.c:65: ans ==> and
data/r-bioc-shortread-1.48.0/src/alphabet.c:82: ans ==> and
data/r-bioc-shortread-1.48.0/src/alphabet.c:83: ans ==> and
data/r-bioc-shortread-1.48.0/src/alphabet.c:93: ans ==> and
data/r-bioc-shortread-1.48.0/src/alphabet.c:96: ans ==> and
data/r-bioc-shortread-1.48.0/src/alphabet.c:97: ans ==> and
data/r-bioc-shortread-1.48.0/src/alphabet.c:141: ans ==> and
data/r-bioc-shortread-1.48.0/src/alphabet.c:158: ans ==> and
data/r-bioc-shortread-1.48.0/src/alphabet.c:159: ans ==> and
data/r-bioc-shortread-1.48.0/src/alphabet.c:160: ans ==> and
data/r-bioc-shortread-1.48.0/src/alphabet.c:171: ans ==> and
data/r-bioc-shortread-1.48.0/src/alphabet.c:193: ans ==> and
data/r-bioc-shortread-1.48.0/src/alphabet.c:199: ans ==> and
data/r-bioc-shortread-1.48.0/src/alphabet.c:200: ans ==> and
data/r-bioc-shortread-1.48.0/src/alphabet.c:201: ans ==> and
data/r-bioc-shortread-1.48.0/src/alphabet.c:213: ans ==> and
data/r-bioc-shortread-1.48.0/src/alphabet.c:273: ans ==> and
data/r-bioc-shortread-1.48.0/src/alphabet.c:274: ans ==> and
data/r-bioc-shortread-1.48.0/src/alphabet.c:275: ans ==> and
data/r-bioc-shortread-1.48.0/src/alphabet.c:280: ans ==> and
data/r-bioc-shortread-1.48.0/src/alphabet.c:293: ans ==> and
data/r-bioc-shortread-1.48.0/src/alphabet.c:294: ans ==> and
data/r-bioc-shortread-1.48.0/src/alphabet.c:295: ans ==> and
data/r-bioc-shortread-1.48.0/src/alphabet.c:303: ans ==> and
data/r-bioc-shortread-1.48.0/src/count.c:43: ans ==> and
data/r-bioc-shortread-1.48.0/src/count.c:49: ans ==> and
data/r-bioc-shortread-1.48.0/src/count.c:54: ans ==> and
data/r-bioc-shortread-1.48.0/src/count.c:59: ans ==> and
data/r-bioc-shortread-1.48.0/src/io.c:179: ans ==> and
data/r-bioc-shortread-1.48.0/src/io.c:185: ans ==> and
data/r-bioc-shortread-1.48.0/src/io.c:186: ans ==> and
data/r-bioc-shortread-1.48.0/src/io.c:187: ans ==> and
data/r-bioc-shortread-1.48.0/src/io.c:191: ans ==> and
data/r-bioc-shortread-1.48.0/src/io.c:197: ans ==> and
data/r-bioc-shortread-1.48.0/src/io.c:198: ans ==> and
data/r-bioc-shortread-1.48.0/src/io.c:203: ans ==> and
data/r-bioc-shortread-1.48.0/src/io.c:220: ans ==> and
data/r-bioc-shortread-1.48.0/src/io.c:264: ans ==> and
data/r-bioc-shortread-1.48.0/src/io.c:268: ans ==> and
data/r-bioc-shortread-1.48.0/src/io.c:274: ans ==> and
data/r-bioc-shortread-1.48.0/src/io.c:279: ans ==> and
data/r-bioc-shortread-1.48.0/src/io.c:280: ans ==> and
data/r-bioc-shortread-1.48.0/src/io.c:280: ans ==> and
data/r-bioc-shortread-1.48.0/src/io.c:327: ans ==> and
data/r-bioc-shortread-1.48.0/src/io.c:336: ans ==> and
data/r-bioc-shortread-1.48.0/src/io.c:337: ans ==> and
data/r-bioc-shortread-1.48.0/src/io.c:339: ans ==> and
data/r-bioc-shortread-1.48.0/src/io.c:341: ans ==> and
data/r-bioc-shortread-1.48.0/src/io.c:342: ans ==> and
data/r-bioc-shortread-1.48.0/src/io.c:348: ans ==> and
data/r-bioc-shortread-1.48.0/src/io.c:354: ans ==> and
data/r-bioc-shortread-1.48.0/src/io.c:356: ans ==> and
data/r-bioc-shortread-1.48.0/src/io.c:357: ans ==> and
data/r-bioc-shortread-1.48.0/src/io.c:358: ans ==> and
data/r-bioc-shortread-1.48.0/src/io.c:359: ans ==> and
data/r-bioc-shortread-1.48.0/src/io.c:362: ans ==> and
data/r-bioc-shortread-1.48.0/src/io.c:453: ans ==> and
data/r-bioc-shortread-1.48.0/src/io.c:458: ans ==> and
data/r-bioc-shortread-1.48.0/src/io.c:474: ans ==> and
data/r-bioc-shortread-1.48.0/src/io.c:480: ans ==> and
data/r-bioc-shortread-1.48.0/src/io.c:482: ans ==> and
data/r-bioc-shortread-1.48.0/src/sampler.c:108: ans ==> and
data/r-bioc-shortread-1.48.0/src/sampler.c:109: ans ==> and
data/r-bioc-shortread-1.48.0/src/sampler.c:111: ans ==> and
data/r-bioc-shortread-1.48.0/src/sampler.c:113: ans ==> and
data/r-bioc-shortread-1.48.0/src/sampler.c:117: ans ==> and
data/r-bioc-shortread-1.48.0/src/sampler.c:118: ans ==> and
data/r-bioc-shortread-1.48.0/src/sampler.c:119: ans ==> and
data/r-bioc-shortread-1.48.0/src/sampler.c:177: ans ==> and
data/r-bioc-shortread-1.48.0/src/sampler.c:180: ans ==> and
data/r-bioc-shortread-1.48.0/src/util.c:83: ans ==> and
data/r-bioc-shortread-1.48.0/src/util.c:85: ans ==> and
data/r-bioc-shortread-1.48.0/src/util.c:111: becuase ==> because
data/r-bioc-shortread-1.48.0/src/util.c:191: ans ==> and
data/r-bioc-shortread-1.48.0/src/util.c:194: ans ==> and
data/r-bioc-shortread-1.48.0/src/util.c:212: ans ==> and
data/r-bioc-shortread-1.48.0/src/util.c:221: ans ==> and
data/r-bioc-shortread-1.48.0/vignettes/Overview.Rnw:403: aligment ==> alignment
data/r-bioc-shortread-1.48.0/vignettes/README:1: extention ==> extension
data/r-bioc-shortread-1.48.0/vignettes/ShortRead_and_HilbertVis.Rnw_:241: funcion ==> function
data/r-bioc-shortread-1.48.0/vignettes/ShortRead_and_HilbertVis.Rnw_:300: teh ==> the
data/r-bioc-shortread-1.48.0/vignettes/ShortRead_and_HilbertVis.Rnw_:300: desribed ==> described
data/r-bioc-shortread-1.48.0/vignettes/ShortRead_and_HilbertVis.Rnw_:446: occurance ==> occurrence
data/r-bioc-shortread-1.48.0/vignettes/simon2.bst:7: alph ==> alpha
data/r-bioc-shortread-1.48.0/vignettes/simon2.bst:11: alph ==> alpha
data/r-bioc-shortread-1.48.0/vignettes/simon2.bst:240: edn ==> end
data/r-bioc-shortread-1.48.0/vignettes/simon2.bst:306: Ser ==> Set
data/r-bioc-shortread-1.48.0/vignettes/simon2.bst:334: Relativ ==> Relative
data/r-bioc-shortread-1.48.0/debian/copyright:127: MERCHANTIBILITY ==> MERCHANTABILITY