data/r-bioc-tfbstools-1.28.0+dfsg/NEWS:40: coersion ==> coercion
data/r-bioc-tfbstools-1.28.0+dfsg/NEWS:65: implmentation ==> implementation
data/r-bioc-tfbstools-1.28.0+dfsg/R/AllClasses.r:282: obejct ==> object
data/r-bioc-tfbstools-1.28.0+dfsg/R/DB-methods.r:51: criterias ==> criteria
data/r-bioc-tfbstools-1.28.0+dfsg/R/DB-methods.r:75: ans ==> and
data/r-bioc-tfbstools-1.28.0+dfsg/R/DB-methods.r:76: ans ==> and
data/r-bioc-tfbstools-1.28.0+dfsg/R/DB-methods.r:77: ans ==> and
data/r-bioc-tfbstools-1.28.0+dfsg/R/DB-methods.r:79: ans ==> and
data/r-bioc-tfbstools-1.28.0+dfsg/R/DB-methods.r:82: ans ==> and
data/r-bioc-tfbstools-1.28.0+dfsg/R/DB-methods.r:90: ans ==> and
data/r-bioc-tfbstools-1.28.0+dfsg/R/DB-methods.r:91: ans ==> and
data/r-bioc-tfbstools-1.28.0+dfsg/R/DB-methods.r:92: ans ==> and
data/r-bioc-tfbstools-1.28.0+dfsg/R/DB-methods.r:94: ans ==> and
data/r-bioc-tfbstools-1.28.0+dfsg/R/DB-methods.r:117: vesion ==> version
data/r-bioc-tfbstools-1.28.0+dfsg/R/DB-methods.r:186: critera ==> criteria
data/r-bioc-tfbstools-1.28.0+dfsg/R/DB-methods.r:218: retrived ==> retrieved
data/r-bioc-tfbstools-1.28.0+dfsg/R/DB-methods.r:299: ans ==> and
data/r-bioc-tfbstools-1.28.0+dfsg/R/DB-methods.r:311: ans ==> and
data/r-bioc-tfbstools-1.28.0+dfsg/R/DB-methods.r:313: ans ==> and
data/r-bioc-tfbstools-1.28.0+dfsg/R/DB-methods.r:314: ans ==> and
data/r-bioc-tfbstools-1.28.0+dfsg/R/DB-methods.r:314: ans ==> and
data/r-bioc-tfbstools-1.28.0+dfsg/R/DB-methods.r:316: ans ==> and
data/r-bioc-tfbstools-1.28.0+dfsg/R/DB-methods.r:316: ans ==> and
data/r-bioc-tfbstools-1.28.0+dfsg/R/DB-methods.r:318: ans ==> and
data/r-bioc-tfbstools-1.28.0+dfsg/R/DB-methods.r:374: ans ==> and
data/r-bioc-tfbstools-1.28.0+dfsg/R/DB-methods.r:386: ans ==> and
data/r-bioc-tfbstools-1.28.0+dfsg/R/DB-methods.r:388: ans ==> and
data/r-bioc-tfbstools-1.28.0+dfsg/R/DB-methods.r:389: ans ==> and
data/r-bioc-tfbstools-1.28.0+dfsg/R/DB-methods.r:389: ans ==> and
data/r-bioc-tfbstools-1.28.0+dfsg/R/DB-methods.r:391: ans ==> and
data/r-bioc-tfbstools-1.28.0+dfsg/R/DB-methods.r:391: ans ==> and
data/r-bioc-tfbstools-1.28.0+dfsg/R/DB-methods.r:431: versin ==> version
data/r-bioc-tfbstools-1.28.0+dfsg/R/DB-methods.r:435: combiation ==> combination
data/r-bioc-tfbstools-1.28.0+dfsg/R/DB-methods.r:449: wil ==> will, well
data/r-bioc-tfbstools-1.28.0+dfsg/R/DB-methods.r:541: ans ==> and
data/r-bioc-tfbstools-1.28.0+dfsg/R/DB-methods.r:781: databse ==> database
data/r-bioc-tfbstools-1.28.0+dfsg/R/DirichletMixture.r:12: ans ==> and
data/r-bioc-tfbstools-1.28.0+dfsg/R/DirichletMixture.r:15: ans ==> and
data/r-bioc-tfbstools-1.28.0+dfsg/R/DirichletMixture.r:18: ans ==> and
data/r-bioc-tfbstools-1.28.0+dfsg/R/ICM-methods.r:41: ans ==> and
data/r-bioc-tfbstools-1.28.0+dfsg/R/ICM-methods.r:43: ans ==> and
data/r-bioc-tfbstools-1.28.0+dfsg/R/ICM-methods.r:43: ans ==> and
data/r-bioc-tfbstools-1.28.0+dfsg/R/ICM-methods.r:44: ans ==> and
data/r-bioc-tfbstools-1.28.0+dfsg/R/ICM-methods.r:117: ans ==> and
data/r-bioc-tfbstools-1.28.0+dfsg/R/ICM-methods.r:118: ans ==> and
data/r-bioc-tfbstools-1.28.0+dfsg/R/ICM-methods.r:142: implemenation ==> implementation
data/r-bioc-tfbstools-1.28.0+dfsg/R/IO.R:53: ans ==> and
data/r-bioc-tfbstools-1.28.0+dfsg/R/IO.R:54: ans ==> and
data/r-bioc-tfbstools-1.28.0+dfsg/R/IO.R:72: oder ==> order, odor
data/r-bioc-tfbstools-1.28.0+dfsg/R/IO.R:88: ans ==> and
data/r-bioc-tfbstools-1.28.0+dfsg/R/IO.R:90: ans ==> and
data/r-bioc-tfbstools-1.28.0+dfsg/R/IO.R:94: ans ==> and
data/r-bioc-tfbstools-1.28.0+dfsg/R/JASPAR.R:21: ans ==> and
data/r-bioc-tfbstools-1.28.0+dfsg/R/JASPAR.R:27: ans ==> and
data/r-bioc-tfbstools-1.28.0+dfsg/R/JASPAR.R:48: seperated ==> separated
data/r-bioc-tfbstools-1.28.0+dfsg/R/JASPAR.R:65: ans ==> and
data/r-bioc-tfbstools-1.28.0+dfsg/R/JASPAR.R:68: ans ==> and
data/r-bioc-tfbstools-1.28.0+dfsg/R/JASPAR.R:76: ans ==> and
data/r-bioc-tfbstools-1.28.0+dfsg/R/JASPAR.R:78: ans ==> and
data/r-bioc-tfbstools-1.28.0+dfsg/R/JASPAR.R:94: ans ==> and
data/r-bioc-tfbstools-1.28.0+dfsg/R/JASPAR.R:95: ans ==> and
data/r-bioc-tfbstools-1.28.0+dfsg/R/JASPAR.R:95: ans ==> and
data/r-bioc-tfbstools-1.28.0+dfsg/R/JASPAR.R:96: ans ==> and
data/r-bioc-tfbstools-1.28.0+dfsg/R/JASPAR.R:97: ans ==> and
data/r-bioc-tfbstools-1.28.0+dfsg/R/JASPAR.R:98: ans ==> and
data/r-bioc-tfbstools-1.28.0+dfsg/R/JASPAR.R:99: ans ==> and
data/r-bioc-tfbstools-1.28.0+dfsg/R/JASPAR.R:103: ans ==> and
data/r-bioc-tfbstools-1.28.0+dfsg/R/Motif-methods.r:29: ans ==> and
data/r-bioc-tfbstools-1.28.0+dfsg/R/Motif-methods.r:60: ans ==> and
data/r-bioc-tfbstools-1.28.0+dfsg/R/Motif-methods.r:62: ans ==> and
data/r-bioc-tfbstools-1.28.0+dfsg/R/Motif-methods.r:63: ans ==> and
data/r-bioc-tfbstools-1.28.0+dfsg/R/Motif-methods.r:70: ans ==> and
data/r-bioc-tfbstools-1.28.0+dfsg/R/Motif-methods.r:75: ans ==> and
data/r-bioc-tfbstools-1.28.0+dfsg/R/PFM-methods.r:9: ans ==> and
data/r-bioc-tfbstools-1.28.0+dfsg/R/PFM-methods.r:10: ans ==> and
data/r-bioc-tfbstools-1.28.0+dfsg/R/PFM-methods.r:25: ans ==> and
data/r-bioc-tfbstools-1.28.0+dfsg/R/PFM-methods.r:27: ans ==> and
data/r-bioc-tfbstools-1.28.0+dfsg/R/PFM-methods.r:33: ans ==> and
data/r-bioc-tfbstools-1.28.0+dfsg/R/PFM-methods.r:35: ans ==> and
data/r-bioc-tfbstools-1.28.0+dfsg/R/PFM-methods.r:41: ans ==> and
data/r-bioc-tfbstools-1.28.0+dfsg/R/PFM-methods.r:43: ans ==> and
data/r-bioc-tfbstools-1.28.0+dfsg/R/PFM-methods.r:50: ans ==> and
data/r-bioc-tfbstools-1.28.0+dfsg/R/PFM-methods.r:52: ans ==> and
data/r-bioc-tfbstools-1.28.0+dfsg/R/PFM-methods.r:59: ans ==> and
data/r-bioc-tfbstools-1.28.0+dfsg/R/PFM-methods.r:61: ans ==> and
data/r-bioc-tfbstools-1.28.0+dfsg/R/PFM-methods.r:84: ans ==> and
data/r-bioc-tfbstools-1.28.0+dfsg/R/PFM-methods.r:86: ans ==> and
data/r-bioc-tfbstools-1.28.0+dfsg/R/PWM-methods.r:101: ans ==> and
data/r-bioc-tfbstools-1.28.0+dfsg/R/PWM-methods.r:103: ans ==> and
data/r-bioc-tfbstools-1.28.0+dfsg/R/PWM-methods.r:103: ans ==> and
data/r-bioc-tfbstools-1.28.0+dfsg/R/PWM-methods.r:104: ans ==> and
data/r-bioc-tfbstools-1.28.0+dfsg/R/PWM-methods.r:124: ans ==> and
data/r-bioc-tfbstools-1.28.0+dfsg/R/PWM-methods.r:125: ans ==> and
data/r-bioc-tfbstools-1.28.0+dfsg/R/PWM-methods.r:147: ans ==> and
data/r-bioc-tfbstools-1.28.0+dfsg/R/PWM-methods.r:150: ans ==> and
data/r-bioc-tfbstools-1.28.0+dfsg/R/PWM-methods.r:153: ans ==> and
data/r-bioc-tfbstools-1.28.0+dfsg/R/PWM-methods.r:167: ans ==> and
data/r-bioc-tfbstools-1.28.0+dfsg/R/PWM-methods.r:169: ans ==> and
data/r-bioc-tfbstools-1.28.0+dfsg/R/PWM-methods.r:171: ans ==> and
data/r-bioc-tfbstools-1.28.0+dfsg/R/PWM-methods.r:253: ans ==> and
data/r-bioc-tfbstools-1.28.0+dfsg/R/PWM-methods.r:261: ans ==> and
data/r-bioc-tfbstools-1.28.0+dfsg/R/PWM-methods.r:262: ans ==> and
data/r-bioc-tfbstools-1.28.0+dfsg/R/PWM-methods.r:263: ans ==> and
data/r-bioc-tfbstools-1.28.0+dfsg/R/PWM-methods.r:273: ans ==> and
data/r-bioc-tfbstools-1.28.0+dfsg/R/PWM-methods.r:280: ans ==> and
data/r-bioc-tfbstools-1.28.0+dfsg/R/PWM-methods.r:281: ans ==> and
data/r-bioc-tfbstools-1.28.0+dfsg/R/PWM-methods.r:282: ans ==> and
data/r-bioc-tfbstools-1.28.0+dfsg/R/PWM-methods.r:292: ans ==> and
data/r-bioc-tfbstools-1.28.0+dfsg/R/PWM-methods.r:301: ans ==> and
data/r-bioc-tfbstools-1.28.0+dfsg/R/PWM-methods.r:302: ans ==> and
data/r-bioc-tfbstools-1.28.0+dfsg/R/PWM-methods.r:303: ans ==> and
data/r-bioc-tfbstools-1.28.0+dfsg/R/PWM-methods.r:312: ans ==> and
data/r-bioc-tfbstools-1.28.0+dfsg/R/PWM-methods.r:320: ans ==> and
data/r-bioc-tfbstools-1.28.0+dfsg/R/PWM-methods.r:321: ans ==> and
data/r-bioc-tfbstools-1.28.0+dfsg/R/PWM-methods.r:322: ans ==> and
data/r-bioc-tfbstools-1.28.0+dfsg/R/PWM-methods.r:328: ans ==> and
data/r-bioc-tfbstools-1.28.0+dfsg/R/PWM-methods.r:333: ans ==> and
data/r-bioc-tfbstools-1.28.0+dfsg/R/PWM-methods.r:334: ans ==> and
data/r-bioc-tfbstools-1.28.0+dfsg/R/PWM-methods.r:442: ans ==> and
data/r-bioc-tfbstools-1.28.0+dfsg/R/PWM-methods.r:451: ans ==> and
data/r-bioc-tfbstools-1.28.0+dfsg/R/PWM-methods.r:460: ans ==> and
data/r-bioc-tfbstools-1.28.0+dfsg/R/PWM-methods.r:460: ans ==> and
data/r-bioc-tfbstools-1.28.0+dfsg/R/PWM-methods.r:463: ans ==> and
data/r-bioc-tfbstools-1.28.0+dfsg/R/PWM-methods.r:472: ans ==> and
data/r-bioc-tfbstools-1.28.0+dfsg/R/PWM-methods.r:481: ans ==> and
data/r-bioc-tfbstools-1.28.0+dfsg/R/PWM-methods.r:481: ans ==> and
data/r-bioc-tfbstools-1.28.0+dfsg/R/PWM-methods.r:483: ans ==> and
data/r-bioc-tfbstools-1.28.0+dfsg/R/PWM-methods.r:494: ans ==> and
data/r-bioc-tfbstools-1.28.0+dfsg/R/PWM-methods.r:496: ans ==> and
data/r-bioc-tfbstools-1.28.0+dfsg/R/PWM-methods.r:505: ans ==> and
data/r-bioc-tfbstools-1.28.0+dfsg/R/PWM-methods.r:506: ans ==> and
data/r-bioc-tfbstools-1.28.0+dfsg/R/PWM-methods.r:555: ans ==> and
data/r-bioc-tfbstools-1.28.0+dfsg/R/PWM-methods.r:564: ans ==> and
data/r-bioc-tfbstools-1.28.0+dfsg/R/PWM-methods.r:564: ans ==> and
data/r-bioc-tfbstools-1.28.0+dfsg/R/PWM-methods.r:567: ans ==> and
data/r-bioc-tfbstools-1.28.0+dfsg/R/PWM-methods.r:568: ans ==> and
data/r-bioc-tfbstools-1.28.0+dfsg/R/PWM-methods.r:569: ans ==> and
data/r-bioc-tfbstools-1.28.0+dfsg/R/PWM-methods.r:570: ans ==> and
data/r-bioc-tfbstools-1.28.0+dfsg/R/PWM-methods.r:572: ans ==> and
data/r-bioc-tfbstools-1.28.0+dfsg/R/PWM-methods.r:616: ans ==> and
data/r-bioc-tfbstools-1.28.0+dfsg/R/PWM-methods.r:618: ans ==> and
data/r-bioc-tfbstools-1.28.0+dfsg/R/PWM-methods.r:626: ans ==> and
data/r-bioc-tfbstools-1.28.0+dfsg/R/PWM-methods.r:628: ans ==> and
data/r-bioc-tfbstools-1.28.0+dfsg/R/SiteSet-methods.r:41: ans ==> and
data/r-bioc-tfbstools-1.28.0+dfsg/R/SiteSet-methods.r:42: ans ==> and
data/r-bioc-tfbstools-1.28.0+dfsg/R/SiteSet-methods.r:52: ans ==> and
data/r-bioc-tfbstools-1.28.0+dfsg/R/SiteSet-methods.r:53: ans ==> and
data/r-bioc-tfbstools-1.28.0+dfsg/R/SiteSet-methods.r:59: ans ==> and
data/r-bioc-tfbstools-1.28.0+dfsg/R/SiteSet-methods.r:60: ans ==> and
data/r-bioc-tfbstools-1.28.0+dfsg/R/SiteSet-methods.r:60: ans ==> and
data/r-bioc-tfbstools-1.28.0+dfsg/R/SiteSet-methods.r:61: ans ==> and
data/r-bioc-tfbstools-1.28.0+dfsg/R/SiteSet-methods.r:67: ans ==> and
data/r-bioc-tfbstools-1.28.0+dfsg/R/SiteSet-methods.r:68: ans ==> and
data/r-bioc-tfbstools-1.28.0+dfsg/R/SiteSet-methods.r:68: ans ==> and
data/r-bioc-tfbstools-1.28.0+dfsg/R/SiteSet-methods.r:69: ans ==> and
data/r-bioc-tfbstools-1.28.0+dfsg/R/SiteSet-methods.r:78: ans ==> and
data/r-bioc-tfbstools-1.28.0+dfsg/R/SiteSet-methods.r:79: ans ==> and
data/r-bioc-tfbstools-1.28.0+dfsg/R/SiteSet-methods.r:85: ans ==> and
data/r-bioc-tfbstools-1.28.0+dfsg/R/SiteSet-methods.r:86: ans ==> and
data/r-bioc-tfbstools-1.28.0+dfsg/R/SiteSet-methods.r:92: ans ==> and
data/r-bioc-tfbstools-1.28.0+dfsg/R/SiteSet-methods.r:93: ans ==> and
data/r-bioc-tfbstools-1.28.0+dfsg/R/SiteSet-methods.r:99: ans ==> and
data/r-bioc-tfbstools-1.28.0+dfsg/R/SiteSet-methods.r:100: ans ==> and
data/r-bioc-tfbstools-1.28.0+dfsg/R/SiteSet-methods.r:162: ans ==> and
data/r-bioc-tfbstools-1.28.0+dfsg/R/SiteSet-methods.r:169: ans ==> and
data/r-bioc-tfbstools-1.28.0+dfsg/R/SiteSet-methods.r:171: ans ==> and
data/r-bioc-tfbstools-1.28.0+dfsg/R/SiteSet-methods.r:251: ans ==> and
data/r-bioc-tfbstools-1.28.0+dfsg/R/SiteSet-methods.r:253: ans ==> and
data/r-bioc-tfbstools-1.28.0+dfsg/R/SiteSet-methods.r:268: ans ==> and
data/r-bioc-tfbstools-1.28.0+dfsg/R/SiteSet-methods.r:269: ans ==> and
data/r-bioc-tfbstools-1.28.0+dfsg/R/SiteSet-methods.r:274: ans ==> and
data/r-bioc-tfbstools-1.28.0+dfsg/R/SiteSet-methods.r:275: ans ==> and
data/r-bioc-tfbstools-1.28.0+dfsg/R/SiteSet-methods.r:311: ans ==> and
data/r-bioc-tfbstools-1.28.0+dfsg/R/SiteSet-methods.r:312: ans ==> and
data/r-bioc-tfbstools-1.28.0+dfsg/R/TFFM.R:78: ans ==> and
data/r-bioc-tfbstools-1.28.0+dfsg/R/TFFM.R:81: ans ==> and
data/r-bioc-tfbstools-1.28.0+dfsg/R/TFFM.R:83: ans ==> and
data/r-bioc-tfbstools-1.28.0+dfsg/R/TFFM.R:86: ans ==> and
data/r-bioc-tfbstools-1.28.0+dfsg/R/TFFM.R:86: ans ==> and
data/r-bioc-tfbstools-1.28.0+dfsg/R/TFFM.R:87: ans ==> and
data/r-bioc-tfbstools-1.28.0+dfsg/R/TFFM.R:88: ans ==> and
data/r-bioc-tfbstools-1.28.0+dfsg/R/TFFM.R:88: ans ==> and
data/r-bioc-tfbstools-1.28.0+dfsg/R/TFFM.R:89: ans ==> and
data/r-bioc-tfbstools-1.28.0+dfsg/R/TFFM.R:97: ans ==> and
data/r-bioc-tfbstools-1.28.0+dfsg/R/TFFM.R:101: ans ==> and
data/r-bioc-tfbstools-1.28.0+dfsg/R/TFFM.R:103: ans ==> and
data/r-bioc-tfbstools-1.28.0+dfsg/R/TFFM.R:105: ans ==> and
data/r-bioc-tfbstools-1.28.0+dfsg/R/TFFM.R:105: ans ==> and
data/r-bioc-tfbstools-1.28.0+dfsg/R/TFFM.R:106: ans ==> and
data/r-bioc-tfbstools-1.28.0+dfsg/R/TFFM.R:107: ans ==> and
data/r-bioc-tfbstools-1.28.0+dfsg/R/TFFM.R:107: ans ==> and
data/r-bioc-tfbstools-1.28.0+dfsg/R/TFFM.R:108: ans ==> and
data/r-bioc-tfbstools-1.28.0+dfsg/R/TFFM.R:108: ans ==> and
data/r-bioc-tfbstools-1.28.0+dfsg/R/TFFM.R:108: ans ==> and
data/r-bioc-tfbstools-1.28.0+dfsg/R/TFFM.R:109: ans ==> and
data/r-bioc-tfbstools-1.28.0+dfsg/R/TFFM.R:118: ans ==> and
data/r-bioc-tfbstools-1.28.0+dfsg/R/TFFM.R:119: ans ==> and
data/r-bioc-tfbstools-1.28.0+dfsg/R/TFFM.R:119: ans ==> and
data/r-bioc-tfbstools-1.28.0+dfsg/R/TFFM.R:120: ans ==> and
data/r-bioc-tfbstools-1.28.0+dfsg/R/TFFM.R:121: ans ==> and
data/r-bioc-tfbstools-1.28.0+dfsg/R/TFFM.R:121: ans ==> and
data/r-bioc-tfbstools-1.28.0+dfsg/R/TFFM.R:122: ans ==> and
data/r-bioc-tfbstools-1.28.0+dfsg/R/TFFM.R:128: ans ==> and
data/r-bioc-tfbstools-1.28.0+dfsg/R/TFFM.R:135: ans ==> and
data/r-bioc-tfbstools-1.28.0+dfsg/R/TFFM.R:137: ans ==> and
data/r-bioc-tfbstools-1.28.0+dfsg/R/TFFM.R:137: ans ==> and
data/r-bioc-tfbstools-1.28.0+dfsg/R/TFFM.R:138: ans ==> and
data/r-bioc-tfbstools-1.28.0+dfsg/R/TFFM.R:139: ans ==> and
data/r-bioc-tfbstools-1.28.0+dfsg/R/TFFM.R:139: ans ==> and
data/r-bioc-tfbstools-1.28.0+dfsg/R/TFFM.R:140: ans ==> and
data/r-bioc-tfbstools-1.28.0+dfsg/R/TFFM.R:149: ans ==> and
data/r-bioc-tfbstools-1.28.0+dfsg/R/TFFM.R:150: ans ==> and
data/r-bioc-tfbstools-1.28.0+dfsg/R/Wrappers-methods.r:35: ans ==> and
data/r-bioc-tfbstools-1.28.0+dfsg/R/Wrappers-methods.r:36: ans ==> and
data/r-bioc-tfbstools-1.28.0+dfsg/R/Wrappers-methods.r:37: ans ==> and
data/r-bioc-tfbstools-1.28.0+dfsg/R/Wrappers-methods.r:39: ans ==> and
data/r-bioc-tfbstools-1.28.0+dfsg/R/Wrappers-methods.r:49: ans ==> and
data/r-bioc-tfbstools-1.28.0+dfsg/R/Wrappers-methods.r:57: ans ==> and
data/r-bioc-tfbstools-1.28.0+dfsg/R/Wrappers-methods.r:57: ans ==> and
data/r-bioc-tfbstools-1.28.0+dfsg/R/Wrappers-methods.r:58: ans ==> and
data/r-bioc-tfbstools-1.28.0+dfsg/R/Wrappers-methods.r:60: ans ==> and
data/r-bioc-tfbstools-1.28.0+dfsg/R/Wrappers-methods.r:73: ans ==> and
data/r-bioc-tfbstools-1.28.0+dfsg/R/Wrappers-methods.r:75: ans ==> and
data/r-bioc-tfbstools-1.28.0+dfsg/R/Wrappers-methods.r:75: ans ==> and
data/r-bioc-tfbstools-1.28.0+dfsg/R/Wrappers-methods.r:76: ans ==> and
data/r-bioc-tfbstools-1.28.0+dfsg/R/Wrappers-methods.r:77: ans ==> and
data/r-bioc-tfbstools-1.28.0+dfsg/R/Wrappers-methods.r:141: ans ==> and
data/r-bioc-tfbstools-1.28.0+dfsg/R/Wrappers-methods.r:142: ans ==> and
data/r-bioc-tfbstools-1.28.0+dfsg/R/Wrappers-methods.r:202: ans ==> and
data/r-bioc-tfbstools-1.28.0+dfsg/R/Wrappers-methods.r:203: ans ==> and
data/r-bioc-tfbstools-1.28.0+dfsg/R/XMatrix-methods.r:116: ans ==> and
data/r-bioc-tfbstools-1.28.0+dfsg/R/XMatrix-methods.r:117: ans ==> and
data/r-bioc-tfbstools-1.28.0+dfsg/R/XMatrix-methods.r:119: ans ==> and
data/r-bioc-tfbstools-1.28.0+dfsg/R/XMatrix-methods.r:120: ans ==> and
data/r-bioc-tfbstools-1.28.0+dfsg/R/XMatrixList-methods.r:19: ans ==> and
data/r-bioc-tfbstools-1.28.0+dfsg/R/XMatrixList-methods.r:20: ans ==> and
data/r-bioc-tfbstools-1.28.0+dfsg/R/coercion-methods.r:31: ans ==> and
data/r-bioc-tfbstools-1.28.0+dfsg/R/coercion-methods.r:44: ans ==> and
data/r-bioc-tfbstools-1.28.0+dfsg/R/coercion-methods.r:55: ans ==> and
data/r-bioc-tfbstools-1.28.0+dfsg/R/coercion-methods.r:62: ans ==> and
data/r-bioc-tfbstools-1.28.0+dfsg/R/coercion-methods.r:68: ans ==> and
data/r-bioc-tfbstools-1.28.0+dfsg/R/coercion-methods.r:69: ans ==> and
data/r-bioc-tfbstools-1.28.0+dfsg/R/coercion-methods.r:73: ans ==> and
data/r-bioc-tfbstools-1.28.0+dfsg/R/coercion-methods.r:74: ans ==> and
data/r-bioc-tfbstools-1.28.0+dfsg/R/coercion-methods.r:79: ans ==> and
data/r-bioc-tfbstools-1.28.0+dfsg/R/coercion-methods.r:80: ans ==> and
data/r-bioc-tfbstools-1.28.0+dfsg/R/coercion-methods.r:85: ans ==> and
data/r-bioc-tfbstools-1.28.0+dfsg/R/coercion-methods.r:92: ans ==> and
data/r-bioc-tfbstools-1.28.0+dfsg/R/coercion-methods.r:102: ans ==> and
data/r-bioc-tfbstools-1.28.0+dfsg/R/coercion-methods.r:104: ans ==> and
data/r-bioc-tfbstools-1.28.0+dfsg/R/coercion-methods.r:109: ans ==> and
data/r-bioc-tfbstools-1.28.0+dfsg/R/coercion-methods.r:110: ans ==> and
data/r-bioc-tfbstools-1.28.0+dfsg/R/coercion-methods.r:143: ans ==> and
data/r-bioc-tfbstools-1.28.0+dfsg/R/coercion-methods.r:144: ans ==> and
data/r-bioc-tfbstools-1.28.0+dfsg/R/coercion-methods.r:148: coersion ==> coercion
data/r-bioc-tfbstools-1.28.0+dfsg/R/coercion-methods.r:154: ans ==> and
data/r-bioc-tfbstools-1.28.0+dfsg/R/coercion-methods.r:155: ans ==> and
data/r-bioc-tfbstools-1.28.0+dfsg/R/coercion-methods.r:160: ans ==> and
data/r-bioc-tfbstools-1.28.0+dfsg/R/coercion-methods.r:161: ans ==> and
data/r-bioc-tfbstools-1.28.0+dfsg/R/coercion-methods.r:194: ans ==> and
data/r-bioc-tfbstools-1.28.0+dfsg/R/coercion-methods.r:195: ans ==> and
data/r-bioc-tfbstools-1.28.0+dfsg/R/show-methods.r:80: ans ==> and
data/r-bioc-tfbstools-1.28.0+dfsg/R/show-methods.r:85: ans ==> and
data/r-bioc-tfbstools-1.28.0+dfsg/R/util-methods.r:40: ans ==> and
data/r-bioc-tfbstools-1.28.0+dfsg/R/util-methods.r:44: ans ==> and
data/r-bioc-tfbstools-1.28.0+dfsg/R/util-methods.r:46: ans ==> and
data/r-bioc-tfbstools-1.28.0+dfsg/R/util-methods.r:83: ans ==> and
data/r-bioc-tfbstools-1.28.0+dfsg/R/util-methods.r:99: ans ==> and
data/r-bioc-tfbstools-1.28.0+dfsg/R/util-methods.r:102: ans ==> and
data/r-bioc-tfbstools-1.28.0+dfsg/inst/TFBSToolsBuild/build.r:100: ans ==> and
data/r-bioc-tfbstools-1.28.0+dfsg/inst/doc/TFBSTools.R:119: comparsion ==> comparison
data/r-bioc-tfbstools-1.28.0+dfsg/inst/doc/TFBSTools.Rmd:57: mutiple ==> multiple
data/r-bioc-tfbstools-1.28.0+dfsg/inst/doc/TFBSTools.Rmd:94: assocated ==> associated
data/r-bioc-tfbstools-1.28.0+dfsg/inst/doc/TFBSTools.Rmd:157: scaning ==> scanning
data/r-bioc-tfbstools-1.28.0+dfsg/inst/doc/TFBSTools.Rmd:209: criterias ==> criteria
data/r-bioc-tfbstools-1.28.0+dfsg/inst/doc/TFBSTools.Rmd:324: comparsion ==> comparison
data/r-bioc-tfbstools-1.28.0+dfsg/inst/doc/TFBSTools.Rmd:370: selcted ==> selected
data/r-bioc-tfbstools-1.28.0+dfsg/inst/doc/TFBSTools.Rmd:401: requied ==> required
data/r-bioc-tfbstools-1.28.0+dfsg/inst/obsolete/TFBSTools.Rnw:57: mutiple ==> multiple
data/r-bioc-tfbstools-1.28.0+dfsg/inst/obsolete/TFBSTools.Rnw:94: assocated ==> associated
data/r-bioc-tfbstools-1.28.0+dfsg/inst/obsolete/TFBSTools.Rnw:153: scaning ==> scanning
data/r-bioc-tfbstools-1.28.0+dfsg/inst/obsolete/TFBSTools.Rnw:206: criterias ==> criteria
data/r-bioc-tfbstools-1.28.0+dfsg/inst/obsolete/TFBSTools.Rnw:320: comparsion ==> comparison
data/r-bioc-tfbstools-1.28.0+dfsg/inst/obsolete/TFBSTools.Rnw:370: selcted ==> selected
data/r-bioc-tfbstools-1.28.0+dfsg/inst/obsolete/TFBSTools.Rnw:402: requied ==> required
data/r-bioc-tfbstools-1.28.0+dfsg/inst/obsolete/matrixAligner.c:222: throgh ==> through
data/r-bioc-tfbstools-1.28.0+dfsg/inst/obsolete/matrixAligner.c:228: posible ==> possible
data/r-bioc-tfbstools-1.28.0+dfsg/man/IUPAC2Matrix.Rd:7: Postion ==> Position
data/r-bioc-tfbstools-1.28.0+dfsg/man/MotifSet-class.Rd:17: softwares ==> software
data/r-bioc-tfbstools-1.28.0+dfsg/man/SiteSet-class.Rd:93: retuned ==> returned
data/r-bioc-tfbstools-1.28.0+dfsg/man/SiteSet-class.Rd:95: refernce ==> reference
data/r-bioc-tfbstools-1.28.0+dfsg/man/XMatrix-class.Rd:141: Obejct ==> Object
data/r-bioc-tfbstools-1.28.0+dfsg/man/XMatrix-class.Rd:227: Coersion ==> Coercion
data/r-bioc-tfbstools-1.28.0+dfsg/man/dmmEM-methods.Rd:36: implemention ==> implementation
data/r-bioc-tfbstools-1.28.0+dfsg/man/getMatrixSet-methods.Rd:37: criterias ==> criteria
data/r-bioc-tfbstools-1.28.0+dfsg/man/getMatrixSet-methods.Rd:66: criterias ==> criteria
data/r-bioc-tfbstools-1.28.0+dfsg/man/getMatrixSet-methods.Rd:91: criterias ==> criteria
data/r-bioc-tfbstools-1.28.0+dfsg/man/permuteMatrix-methods.Rd:22: obejct ==> object
data/r-bioc-tfbstools-1.28.0+dfsg/man/readJASPARMatrix.Rd:27: exmaple ==> example
data/r-bioc-tfbstools-1.28.0+dfsg/man/readXMLTFFM.Rd:8: ouput ==> output
data/r-bioc-tfbstools-1.28.0+dfsg/man/runMEME-methods.Rd:32: addtional ==> additional
data/r-bioc-tfbstools-1.28.0+dfsg/man/runMEME-methods.Rd:39: defult ==> default
data/r-bioc-tfbstools-1.28.0+dfsg/man/searchAln-methods.Rd:47: chracter ==> character
data/r-bioc-tfbstools-1.28.0+dfsg/man/toICM-methods.Rd:50: contect ==> contact, context, connect
data/r-bioc-tfbstools-1.28.0+dfsg/src/matrixAlignerDynamic.c:28: arrary ==> array
data/r-bioc-tfbstools-1.28.0+dfsg/src/matrixAlignerDynamic.c:229: throgh ==> through
data/r-bioc-tfbstools-1.28.0+dfsg/src/matrixAlignerDynamic.c:235: posible ==> possible
data/r-bioc-tfbstools-1.28.0+dfsg/tests/testthat/test_MEME.R:4: ans ==> and
data/r-bioc-tfbstools-1.28.0+dfsg/tests/testthat/test_MEME.R:5: ans ==> and
data/r-bioc-tfbstools-1.28.0+dfsg/tests/testthat/test_MEME.R:6: ans ==> and
data/r-bioc-tfbstools-1.28.0+dfsg/tests/testthat/test_MEME.R:7: ans ==> and
data/r-bioc-tfbstools-1.28.0+dfsg/vignettes/TFBSTools.Rmd:57: mutiple ==> multiple
data/r-bioc-tfbstools-1.28.0+dfsg/vignettes/TFBSTools.Rmd:94: assocated ==> associated
data/r-bioc-tfbstools-1.28.0+dfsg/vignettes/TFBSTools.Rmd:157: scaning ==> scanning
data/r-bioc-tfbstools-1.28.0+dfsg/vignettes/TFBSTools.Rmd:209: criterias ==> criteria
data/r-bioc-tfbstools-1.28.0+dfsg/vignettes/TFBSTools.Rmd:324: comparsion ==> comparison
data/r-bioc-tfbstools-1.28.0+dfsg/vignettes/TFBSTools.Rmd:370: selcted ==> selected
data/r-bioc-tfbstools-1.28.0+dfsg/vignettes/TFBSTools.Rmd:401: requied ==> required