data/r-cran-phangorn-2.5.5/NAMESPACE:231: hist ==> heist, his
data/r-cran-phangorn-2.5.5/NEWS:212: experimantal ==> experimental
data/r-cran-phangorn-2.5.5/NEWS:248: excange ==> exchange
data/r-cran-phangorn-2.5.5/NEWS:390: construcion ==> construction
data/r-cran-phangorn-2.5.5/NEWS:410: consistant ==> consistent
data/r-cran-phangorn-2.5.5/NEWS:502: aviod ==> avoid
data/r-cran-phangorn-2.5.5/NEWS:526: occured ==> occurred
data/r-cran-phangorn-2.5.5/NEWS:581: ambigious ==> ambiguous
data/r-cran-phangorn-2.5.5/NEWS:625: formated ==> formatted
data/r-cran-phangorn-2.5.5/NEWS:713: experimantal ==> experimental
data/r-cran-phangorn-2.5.5/NEWS:789: concensus ==> consensus
data/r-cran-phangorn-2.5.5/README.md:23: tha ==> than, that, the
data/r-cran-phangorn-2.5.5/inst/extdata/MtZoa.dat:22: Ser ==> Set
data/r-cran-phangorn-2.5.5/inst/extdata/wag.dat:25: Ser ==> Set
data/r-cran-phangorn-2.5.5/inst/extdata/jtt-dcmut.dat:26: Ser ==> Set
data/r-cran-phangorn-2.5.5/inst/extdata/mtArt.dat:28: Ser ==> Set
data/r-cran-phangorn-2.5.5/inst/extdata/mtREV24.dat:24: Ser ==> Set
data/r-cran-phangorn-2.5.5/inst/extdata/cpREV.dat:25: Ser ==> Set
data/r-cran-phangorn-2.5.5/inst/extdata/mtmam.dat:25: Ser ==> Set
data/r-cran-phangorn-2.5.5/inst/extdata/dayhoff-dcmut.dat:26: Ser ==> Set
data/r-cran-phangorn-2.5.5/inst/extdata/trees/woodmouse.nxs:510: uptodate ==> up-to-date
data/r-cran-phangorn-2.5.5/inst/extdata/trees/RAxML_distances.Wang.nxs:1187: uptodate ==> up-to-date
data/r-cran-phangorn-2.5.5/inst/doc/Trees.Rnw:42: extenstion ==> extension
data/r-cran-phangorn-2.5.5/inst/doc/Trees.Rnw:141: supress ==> suppress
data/r-cran-phangorn-2.5.5/inst/doc/Trees.Rnw:141: permuation ==> permutation
data/r-cran-phangorn-2.5.5/inst/doc/Trees.Rnw:257: alignement ==> alignment
data/r-cran-phangorn-2.5.5/inst/doc/Networx.html:76: ot ==> to, of, or
data/r-cran-phangorn-2.5.5/inst/doc/Networx.html:289: ot ==> to, of, or
data/r-cran-phangorn-2.5.5/inst/doc/Networx.html:328: ot ==> to, of, or
data/r-cran-phangorn-2.5.5/inst/doc/Networx.html:357: ot ==> to, of, or
data/r-cran-phangorn-2.5.5/inst/doc/Networx.html:364: ot ==> to, of, or
data/r-cran-phangorn-2.5.5/inst/doc/Networx.html:372: ot ==> to, of, or
data/r-cran-phangorn-2.5.5/inst/doc/IntertwiningTreesAndNetworks.html:76: ot ==> to, of, or
data/r-cran-phangorn-2.5.5/inst/doc/IntertwiningTreesAndNetworks.html:289: ot ==> to, of, or
data/r-cran-phangorn-2.5.5/inst/doc/IntertwiningTreesAndNetworks.html:328: ot ==> to, of, or
data/r-cran-phangorn-2.5.5/inst/doc/IntertwiningTreesAndNetworks.html:330: ot ==> to, of, or
data/r-cran-phangorn-2.5.5/inst/doc/IntertwiningTreesAndNetworks.html:391: Fo ==> Of, for
data/r-cran-phangorn-2.5.5/inst/doc/IntertwiningTreesAndNetworks.html:436: ot ==> to, of, or
data/r-cran-phangorn-2.5.5/inst/doc/IntertwiningTreesAndNetworks.html:449: ot ==> to, of, or
data/r-cran-phangorn-2.5.5/inst/doc/IntertwiningTreesAndNetworks.html:459: ot ==> to, of, or
data/r-cran-phangorn-2.5.5/inst/doc/IntertwiningTreesAndNetworks.html:462: ot ==> to, of, or
data/r-cran-phangorn-2.5.5/inst/doc/IntertwiningTreesAndNetworks.html:466: fO ==> of, for
data/r-cran-phangorn-2.5.5/inst/doc/IntertwiningTreesAndNetworks.html:472: bootstapped ==> bootstrapped
data/r-cran-phangorn-2.5.5/inst/doc/IntertwiningTreesAndNetworks.html:491: ot ==> to, of, or
data/r-cran-phangorn-2.5.5/inst/doc/IntertwiningTreesAndNetworks.html:493: ot ==> to, of, or
data/r-cran-phangorn-2.5.5/inst/doc/IntertwiningTreesAndNetworks.html:493: ot ==> to, of, or
data/r-cran-phangorn-2.5.5/inst/doc/IntertwiningTreesAndNetworks.html:517: ot ==> to, of, or
data/r-cran-phangorn-2.5.5/inst/doc/IntertwiningTreesAndNetworks.html:521: te ==> the, be, we
data/r-cran-phangorn-2.5.5/inst/doc/IntertwiningTreesAndNetworks.html:542: Ue ==> Use, due
data/r-cran-phangorn-2.5.5/inst/doc/IntertwiningTreesAndNetworks.html:552: ot ==> to, of, or
data/r-cran-phangorn-2.5.5/inst/doc/IntertwiningTreesAndNetworks.html:552: ot ==> to, of, or
data/r-cran-phangorn-2.5.5/inst/doc/IntertwiningTreesAndNetworks.html:552: ot ==> to, of, or
data/r-cran-phangorn-2.5.5/inst/doc/IntertwiningTreesAndNetworks.html:553: ot ==> to, of, or
data/r-cran-phangorn-2.5.5/inst/doc/IntertwiningTreesAndNetworks.html:554: bA ==> by, be
data/r-cran-phangorn-2.5.5/inst/doc/IntertwiningTreesAndNetworks.html:554: Fro ==> For, from
data/r-cran-phangorn-2.5.5/inst/doc/IntertwiningTreesAndNetworks.Rmd:209: bootstapped ==> bootstrapped
data/r-cran-phangorn-2.5.5/inst/doc/Ancestral.Rnw:37: extenstion ==> extension
data/r-cran-phangorn-2.5.5/inst/doc/phangorn-specials.Rnw:41: extenstion ==> extension
data/r-cran-phangorn-2.5.5/inst/doc/phangorn-specials.Rnw:133: paramters ==> parameters
data/r-cran-phangorn-2.5.5/inst/doc/phangorn-specials.Rnw:256: addional ==> additional
data/r-cran-phangorn-2.5.5/src/sprdist.c:96: comparisions ==> comparisons
data/r-cran-phangorn-2.5.5/src/sprdist.c:1025: dissapeared ==> disappeared
data/r-cran-phangorn-2.5.5/src/ml.c:173: ans ==> and
data/r-cran-phangorn-2.5.5/src/ml.c:185: ans ==> and
data/r-cran-phangorn-2.5.5/src/ml.c:188: ans ==> and
data/r-cran-phangorn-2.5.5/src/ml.c:190: ans ==> and
data/r-cran-phangorn-2.5.5/src/ml.c:190: ans ==> and
data/r-cran-phangorn-2.5.5/src/ml.c:196: ans ==> and
data/r-cran-phangorn-2.5.5/src/ml.c:197: ans ==> and
data/r-cran-phangorn-2.5.5/src/ml.c:200: ans ==> and
data/r-cran-phangorn-2.5.5/src/ml.c:201: ans ==> and
data/r-cran-phangorn-2.5.5/src/ml.c:207: ans ==> and
data/r-cran-phangorn-2.5.5/src/ml.c:223: ans ==> and
data/r-cran-phangorn-2.5.5/src/ml.c:227: ans ==> and
data/r-cran-phangorn-2.5.5/src/ml.c:229: ans ==> and
data/r-cran-phangorn-2.5.5/src/ml.c:229: ans ==> and
data/r-cran-phangorn-2.5.5/src/ml.c:237: ans ==> and
data/r-cran-phangorn-2.5.5/src/ml.c:240: ans ==> and
data/r-cran-phangorn-2.5.5/src/ml.c:243: ans ==> and
data/r-cran-phangorn-2.5.5/src/ml.c:246: ans ==> and
data/r-cran-phangorn-2.5.5/src/ml.c:567: ans ==> and
data/r-cran-phangorn-2.5.5/src/ml.c:571: ans ==> and
data/r-cran-phangorn-2.5.5/src/ml.c:579: ans ==> and
data/r-cran-phangorn-2.5.5/src/ml.c:587: ans ==> and
data/r-cran-phangorn-2.5.5/src/ml.c:594: ans ==> and
data/r-cran-phangorn-2.5.5/src/ml.c:599: ans ==> and
data/r-cran-phangorn-2.5.5/src/ml.c:600: ans ==> and
data/r-cran-phangorn-2.5.5/src/ml.c:601: ans ==> and
data/r-cran-phangorn-2.5.5/src/phangorn.c:260: ans ==> and
data/r-cran-phangorn-2.5.5/src/phangorn.c:262: ans ==> and
data/r-cran-phangorn-2.5.5/src/phangorn.c:266: ans ==> and
data/r-cran-phangorn-2.5.5/R/discrete.gamma.R:16: wether ==> weather, whether
data/r-cran-phangorn-2.5.5/R/discrete.gamma.R:16: continous ==> continuous
data/r-cran-phangorn-2.5.5/R/discrete.gamma.R:18: wether ==> weather, whether
data/r-cran-phangorn-2.5.5/R/discrete.gamma.R:18: cummulative ==> cumulative
data/r-cran-phangorn-2.5.5/R/read.nexus.splits.R:297: uptodate ==> up-to-date
data/r-cran-phangorn-2.5.5/R/SH.R:12: occurances ==> occurrences
data/r-cran-phangorn-2.5.5/R/pmlPart.R:331: AllEdge ==> allege
data/r-cran-phangorn-2.5.5/R/pmlPart.R:343: AllEdge ==> allege
data/r-cran-phangorn-2.5.5/R/pmlPart.R:419: AllEdge ==> allege
data/r-cran-phangorn-2.5.5/R/pmlPart.R:422: AllEdge ==> allege
data/r-cran-phangorn-2.5.5/R/pmlPart.R:465: AllEdge ==> allege
data/r-cran-phangorn-2.5.5/R/pmlPart.R:574: AllEdge ==> allege
data/r-cran-phangorn-2.5.5/R/pmlPart.R:578: AllEdge ==> allege
data/r-cran-phangorn-2.5.5/R/pmlPart.R:886: AllEdge ==> allege
data/r-cran-phangorn-2.5.5/R/pmlPart.R:914: AllEdge ==> allege
data/r-cran-phangorn-2.5.5/R/pmlPart.R:931: AllEdge ==> allege
data/r-cran-phangorn-2.5.5/R/pmlPart.R:941: AllEdge ==> allege
data/r-cran-phangorn-2.5.5/R/codonTest.R:30: whith ==> with
data/r-cran-phangorn-2.5.5/R/distTree.R:605: programing ==> programming
data/r-cran-phangorn-2.5.5/R/distTree.R:660: programing ==> programming
data/r-cran-phangorn-2.5.5/R/SOWH.R:125: hist ==> heist, his
data/r-cran-phangorn-2.5.5/R/phylo.R:255: lik ==> like, lick, link
data/r-cran-phangorn-2.5.5/R/phylo.R:256: lik ==> like, lick, link
data/r-cran-phangorn-2.5.5/R/phylo.R:1484: probabilty ==> probability
data/r-cran-phangorn-2.5.5/R/Densi.R:78: skalar ==> scalar
data/r-cran-phangorn-2.5.5/R/networx.R:75: allEdges ==> alleges
data/r-cran-phangorn-2.5.5/R/networx.R:81: allEdges ==> alleges
data/r-cran-phangorn-2.5.5/R/networx.R:86: allEdges ==> alleges
data/r-cran-phangorn-2.5.5/R/networx.R:87: allEdges ==> alleges
data/r-cran-phangorn-2.5.5/R/networx.R:87: allEdges ==> alleges
data/r-cran-phangorn-2.5.5/R/networx.R:89: allEdges ==> alleges
data/r-cran-phangorn-2.5.5/R/networx.R:89: allEdges ==> alleges
data/r-cran-phangorn-2.5.5/R/networx.R:90: allEdges ==> alleges
data/r-cran-phangorn-2.5.5/R/networx.R:90: allEdges ==> alleges
data/r-cran-phangorn-2.5.5/R/networx.R:114: pathes ==> paths
data/r-cran-phangorn-2.5.5/R/networx.R:152: alle ==> all, alley
data/r-cran-phangorn-2.5.5/R/delta.score.R:52: hist ==> heist, his
data/r-cran-phangorn-2.5.5/R/pmlMix.R:356: AllEdge ==> allege
data/r-cran-phangorn-2.5.5/R/pmlMix.R:413: AllEdge ==> allege
data/r-cran-phangorn-2.5.5/R/pmlMix.R:413: AllEdge ==> allege
data/r-cran-phangorn-2.5.5/R/pmlMix.R:494: AllEdge ==> allege
data/r-cran-phangorn-2.5.5/R/treeManipulation.R:91: nodel ==> model, nodal
data/r-cran-phangorn-2.5.5/R/zzz.R:13: hist ==> heist, his
data/r-cran-phangorn-2.5.5/vignettes/phangorn.bib:638: maxumum ==> maximum
data/r-cran-phangorn-2.5.5/vignettes/Trees.Rnw:42: extenstion ==> extension
data/r-cran-phangorn-2.5.5/vignettes/Trees.Rnw:141: supress ==> suppress
data/r-cran-phangorn-2.5.5/vignettes/Trees.Rnw:141: permuation ==> permutation
data/r-cran-phangorn-2.5.5/vignettes/Trees.Rnw:257: alignement ==> alignment
data/r-cran-phangorn-2.5.5/vignettes/IntertwiningTreesAndNetworks.Rmd:209: bootstapped ==> bootstrapped
data/r-cran-phangorn-2.5.5/vignettes/Ancestral.Rnw:37: extenstion ==> extension
data/r-cran-phangorn-2.5.5/vignettes/phangorn-specials.Rnw:41: extenstion ==> extension
data/r-cran-phangorn-2.5.5/vignettes/phangorn-specials.Rnw:133: paramters ==> parameters
data/r-cran-phangorn-2.5.5/vignettes/phangorn-specials.Rnw:256: addional ==> additional
data/r-cran-phangorn-2.5.5/man/pml.Rd:97: probabilty ==> probability
data/r-cran-phangorn-2.5.5/man/midpoint.Rd:24: nodel ==> model, nodal
data/r-cran-phangorn-2.5.5/man/discrete.gamma.Rd:23: wether ==> weather, whether
data/r-cran-phangorn-2.5.5/man/discrete.gamma.Rd:23: continous ==> continuous
data/r-cran-phangorn-2.5.5/man/discrete.gamma.Rd:26: wether ==> weather, whether
data/r-cran-phangorn-2.5.5/man/discrete.gamma.Rd:26: cummulative ==> cumulative
data/r-cran-phangorn-2.5.5/man/densiTree.Rd:33: skalar ==> scalar
data/r-cran-phangorn-2.5.5/man/delta.score.Rd:25: hist ==> heist, his
data/r-cran-phangorn-2.5.5/man/codonTest.Rd:33: whith ==> with
data/r-cran-phangorn-2.5.5/man/SH.test.Rd:19: occurances ==> occurrences