data/r-cran-pscbs-0.65.0/NAMESPACE:61: CNA ==> CAN
data/r-cran-pscbs-0.65.0/NAMESPACE:61: CNA ==> CAN
data/r-cran-pscbs-0.65.0/NAMESPACE:70: preceeding ==> preceding, proceeding
data/r-cran-pscbs-0.65.0/NAMESPACE:221: CNA ==> CAN
data/r-cran-pscbs-0.65.0/NAMESPACE:222: CNA ==> CAN
data/r-cran-pscbs-0.65.0/R/CBS.R:67: explicity ==> explicitly
data/r-cran-pscbs-0.65.0/R/CBS.RESTRUCT.R:311: nd ==> and, 2nd
data/r-cran-pscbs-0.65.0/R/CBS.SMOOTH.R:43: dataS ==> data
data/r-cran-pscbs-0.65.0/R/CBS.SMOOTH.R:57: dataS ==> data
data/r-cran-pscbs-0.65.0/R/CBS.SMOOTH.R:57: dataS ==> data
data/r-cran-pscbs-0.65.0/R/CBS.SMOOTH.R:60: dataS ==> data
data/r-cran-pscbs-0.65.0/R/CBS.joinSegments.R:87: prevEnd ==> prevent
data/r-cran-pscbs-0.65.0/R/CBS.joinSegments.R:91: prevEnd ==> prevent
data/r-cran-pscbs-0.65.0/R/CBS.joinSegments.R:95: prevEnd ==> prevent
data/r-cran-pscbs-0.65.0/R/CNA.EXTS.R:1: CNA ==> CAN
data/r-cran-pscbs-0.65.0/R/DNAcopy.EXTS.R:56: CNA ==> CAN
data/r-cran-pscbs-0.65.0/R/PairedPSCBS.BOOT.R:14: postive ==> positive
data/r-cran-pscbs-0.65.0/R/PairedPSCBS.BOOT.R:918: whats ==> what's
data/r-cran-pscbs-0.65.0/R/PairedPSCBS.BOOT.R:919: whats ==> what's
data/r-cran-pscbs-0.65.0/R/PairedPSCBS.BOOT.R:1015: happend ==> happened, happens, happen
data/r-cran-pscbs-0.65.0/R/PairedPSCBS.BOOT.R:1025: Beause ==> Because
data/r-cran-pscbs-0.65.0/R/PairedPSCBS.CALL.R:132: convenince ==> convenience
data/r-cran-pscbs-0.65.0/R/PairedPSCBS.callAB.R:253: convenince ==> convenience
data/r-cran-pscbs-0.65.0/R/PairedPSCBS.callCopyNeutral.R:525: segements ==> segments
data/r-cran-pscbs-0.65.0/R/PairedPSCBS.callLOH.R:202: intervalls ==> intervals
data/r-cran-pscbs-0.65.0/R/PairedPSCBS.callLOH.R:272: convenince ==> convenience
data/r-cran-pscbs-0.65.0/R/PairedPSCBS.callROH.R:160: paramter ==> parameter
data/r-cran-pscbs-0.65.0/R/PairedPSCBS.estimateDeltaAB.R:18: maxium ==> maximum
data/r-cran-pscbs-0.65.0/R/PairedPSCBS.estimateDeltaAB.R:86: Unkown ==> Unknown
data/r-cran-pscbs-0.65.0/R/PairedPSCBS.estimateDeltaLOH.R:18: maxium ==> maximum
data/r-cran-pscbs-0.65.0/R/PairedPSCBS.estimateDeltaLOH.R:60: Unkown ==> Unknown
data/r-cran-pscbs-0.65.0/R/PairedPSCBS.estimateDeltaLOH.R:103: treshold ==> threshold
data/r-cran-pscbs-0.65.0/R/PairedPSCBS.estimateKappa.R:63: segements ==> segments
data/r-cran-pscbs-0.65.0/R/callSegmentationOutliers.R:53: CNA ==> CAN
data/r-cran-pscbs-0.65.0/R/callSegmentationOutliers.R:59: CNA ==> CAN
data/r-cran-pscbs-0.65.0/R/callSegmentationOutliers.R:149: Supress ==> Suppress
data/r-cran-pscbs-0.65.0/R/callSegmentationOutliers.R:149: CNA ==> CAN
data/r-cran-pscbs-0.65.0/R/callSegmentationOutliers.R:153: CNA ==> CAN
data/r-cran-pscbs-0.65.0/R/callSegmentationOutliers.R:157: CNA ==> CAN
data/r-cran-pscbs-0.65.0/R/findNeutralCopyNumberState.R:16: argumants ==> arguments
data/r-cran-pscbs-0.65.0/R/prememoize.R:15: Explictly ==> Explicitly
data/r-cran-pscbs-0.65.0/R/segmentByCBS.R:5: CNA ==> CAN
data/r-cran-pscbs-0.65.0/R/segmentByCBS.R:126: Explictly ==> Explicitly
data/r-cran-pscbs-0.65.0/R/segmentByCBS.R:282: CNA ==> CAN
data/r-cran-pscbs-0.65.0/R/segmentByCBS.R:462: dataS ==> data
data/r-cran-pscbs-0.65.0/R/segmentByCBS.R:463: dataS ==> data
data/r-cran-pscbs-0.65.0/R/segmentByCBS.R:464: dataS ==> data
data/r-cran-pscbs-0.65.0/R/segmentByCBS.R:465: dataS ==> data
data/r-cran-pscbs-0.65.0/R/segmentByCBS.R:687: Supress ==> Suppress
data/r-cran-pscbs-0.65.0/R/segmentByCBS.R:687: CNA ==> CAN
data/r-cran-pscbs-0.65.0/R/segmentByCBS.R:691: CNA ==> CAN
data/r-cran-pscbs-0.65.0/R/segmentByCBS.R:783: CNA ==> CAN
data/r-cran-pscbs-0.65.0/R/segmentByCBS.R:786: CNA ==> CAN
data/r-cran-pscbs-0.65.0/R/segmentByPairedPSCBS.R:26: seperately ==> separately
data/r-cran-pscbs-0.65.0/R/segmentByPairedPSCBS.R:387: CNA ==> CAN
data/r-cran-pscbs-0.65.0/incl/segmentByCBS,tests.Rex:27: inbetween ==> between, in between
data/r-cran-pscbs-0.65.0/incl/segmentByNonPairedPSCBS.Rex:14: dataS ==> data
data/r-cran-pscbs-0.65.0/incl/segmentByNonPairedPSCBS.Rex:17: dataS ==> data
data/r-cran-pscbs-0.65.0/incl/segmentByNonPairedPSCBS.Rex:17: dataS ==> data
data/r-cran-pscbs-0.65.0/incl/segmentByNonPairedPSCBS.Rex:19: dataS ==> data
data/r-cran-pscbs-0.65.0/incl/segmentByNonPairedPSCBS.Rex:21: dataS ==> data
data/r-cran-pscbs-0.65.0/incl/segmentByPairedPSCBS,HetsAndHoms.Rex:14: dataS ==> data
data/r-cran-pscbs-0.65.0/incl/segmentByPairedPSCBS,HetsAndHoms.Rex:17: dataS ==> data
data/r-cran-pscbs-0.65.0/incl/segmentByPairedPSCBS,HetsAndHoms.Rex:17: dataS ==> data
data/r-cran-pscbs-0.65.0/incl/segmentByPairedPSCBS,HetsAndHoms.Rex:19: dataS ==> data
data/r-cran-pscbs-0.65.0/incl/segmentByPairedPSCBS,HetsAndHoms.Rex:25: dataS ==> data
data/r-cran-pscbs-0.65.0/incl/segmentByPairedPSCBS,HetsAndHoms.Rex:28: dataS ==> data
data/r-cran-pscbs-0.65.0/incl/segmentByPairedPSCBS,HetsAndHoms.Rex:45: dataS ==> data
data/r-cran-pscbs-0.65.0/incl/segmentByPairedPSCBS,allLOH.Rex:13: happend ==> happened, happens, happen
data/r-cran-pscbs-0.65.0/incl/segmentByPairedPSCBS,allLOH.Rex:34: dataS ==> data
data/r-cran-pscbs-0.65.0/incl/segmentByPairedPSCBS,allLOH.Rex:37: dataS ==> data
data/r-cran-pscbs-0.65.0/incl/segmentByPairedPSCBS.Rex:14: dataS ==> data
data/r-cran-pscbs-0.65.0/incl/segmentByPairedPSCBS.Rex:17: dataS ==> data
data/r-cran-pscbs-0.65.0/incl/segmentByPairedPSCBS.Rex:17: dataS ==> data
data/r-cran-pscbs-0.65.0/incl/segmentByPairedPSCBS.Rex:19: dataS ==> data
data/r-cran-pscbs-0.65.0/incl/segmentByPairedPSCBS.Rex:21: dataS ==> data
data/r-cran-pscbs-0.65.0/inst/templates/rsp/CBS,report.tex.rsp:199: partion ==> partition, portion
data/r-cran-pscbs-0.65.0/inst/templates/rsp/NonPairedPSCBS,report.tex.rsp:142: partion ==> partition, portion
data/r-cran-pscbs-0.65.0/inst/templates/rsp/PairedPSCBS,report.tex.rsp:214: partion ==> partition, portion
data/r-cran-pscbs-0.65.0/inst/templates/rsp/PairedPSCBS,report.tex.rsp:590: occuring ==> occurring
data/r-cran-pscbs-0.65.0/man/bootstrapTCNandDHByRegion.PairedPSCBS.Rd:28: postive ==> positive
data/r-cran-pscbs-0.65.0/man/callSegmentationOutliers.Rd:26: CNA ==> CAN
data/r-cran-pscbs-0.65.0/man/callSegmentationOutliers.Rd:63: CNA ==> CAN
data/r-cran-pscbs-0.65.0/man/estimateDeltaAB.PairedPSCBS.Rd:31: maxium ==> maximum
data/r-cran-pscbs-0.65.0/man/estimateDeltaLOH.PairedPSCBS.Rd:30: maxium ==> maximum
data/r-cran-pscbs-0.65.0/man/estimateDeltaLOHByMinC1ForNonAB.PairedPSCBS.Rd:37: treshold ==> threshold
data/r-cran-pscbs-0.65.0/man/estimateKappaByC1Density.PairedPSCBS.Rd:27: segements ==> segments
data/r-cran-pscbs-0.65.0/man/findNeutralCopyNumberState.Rd:28: argumants ==> arguments
data/r-cran-pscbs-0.65.0/man/segmentByCBS.Rd:14: CNA ==> CAN
data/r-cran-pscbs-0.65.0/man/segmentByCBS.Rd:167: inbetween ==> between, in between
data/r-cran-pscbs-0.65.0/man/segmentByNonPairedPSCBS.Rd:104: dataS ==> data
data/r-cran-pscbs-0.65.0/man/segmentByNonPairedPSCBS.Rd:107: dataS ==> data
data/r-cran-pscbs-0.65.0/man/segmentByNonPairedPSCBS.Rd:107: dataS ==> data
data/r-cran-pscbs-0.65.0/man/segmentByNonPairedPSCBS.Rd:109: dataS ==> data
data/r-cran-pscbs-0.65.0/man/segmentByNonPairedPSCBS.Rd:111: dataS ==> data
data/r-cran-pscbs-0.65.0/man/segmentByPairedPSCBS.Rd:42: seperately ==> separately
data/r-cran-pscbs-0.65.0/man/segmentByPairedPSCBS.Rd:160: dataS ==> data
data/r-cran-pscbs-0.65.0/man/segmentByPairedPSCBS.Rd:163: dataS ==> data
data/r-cran-pscbs-0.65.0/man/segmentByPairedPSCBS.Rd:163: dataS ==> data
data/r-cran-pscbs-0.65.0/man/segmentByPairedPSCBS.Rd:165: dataS ==> data
data/r-cran-pscbs-0.65.0/man/segmentByPairedPSCBS.Rd:167: dataS ==> data
data/r-cran-pscbs-0.65.0/revdep/problems.md:78: orignal ==> original
data/r-cran-pscbs-0.65.0/revdep/problems.md:78: devided ==> divided
data/r-cran-pscbs-0.65.0/tests/PairedPSCBS,boot.R:17: dataS ==> data
data/r-cran-pscbs-0.65.0/tests/PairedPSCBS,boot.R:18: dataS ==> data
data/r-cran-pscbs-0.65.0/tests/PairedPSCBS,boot.R:18: dataS ==> data
data/r-cran-pscbs-0.65.0/tests/PairedPSCBS,boot.R:20: dataS ==> data
data/r-cran-pscbs-0.65.0/tests/PairedPSCBS,boot.R:27: dataS ==> data
data/r-cran-pscbs-0.65.0/tests/segmentByCBS,calls.R:23: dataS ==> data
data/r-cran-pscbs-0.65.0/tests/segmentByCBS,calls.R:26: dataS ==> data
data/r-cran-pscbs-0.65.0/tests/segmentByCBS,calls.R:26: dataS ==> data
data/r-cran-pscbs-0.65.0/tests/segmentByCBS,calls.R:28: dataS ==> data
data/r-cran-pscbs-0.65.0/tests/segmentByCBS,calls.R:30: dataS ==> data
data/r-cran-pscbs-0.65.0/tests/segmentByCBS,calls.R:34: dataS ==> data
data/r-cran-pscbs-0.65.0/tests/segmentByCBS,report.R:22: dataS ==> data
data/r-cran-pscbs-0.65.0/tests/segmentByCBS,report.R:25: dataS ==> data
data/r-cran-pscbs-0.65.0/tests/segmentByCBS,report.R:25: dataS ==> data
data/r-cran-pscbs-0.65.0/tests/segmentByCBS,report.R:27: dataS ==> data
data/r-cran-pscbs-0.65.0/tests/segmentByCBS,report.R:29: dataS ==> data
data/r-cran-pscbs-0.65.0/tests/segmentByCBS,report.R:33: dataS ==> data
data/r-cran-pscbs-0.65.0/tests/segmentByNonPairedPSCBS,medianDH.R:19: dataS ==> data
data/r-cran-pscbs-0.65.0/tests/segmentByNonPairedPSCBS,medianDH.R:22: dataS ==> data
data/r-cran-pscbs-0.65.0/tests/segmentByNonPairedPSCBS,medianDH.R:22: dataS ==> data
data/r-cran-pscbs-0.65.0/tests/segmentByNonPairedPSCBS,medianDH.R:25: dataS ==> data
data/r-cran-pscbs-0.65.0/tests/segmentByNonPairedPSCBS,medianDH.R:27: dataS ==> data
data/r-cran-pscbs-0.65.0/tests/segmentByNonPairedPSCBS,medianDH.R:27: dataS ==> data
data/r-cran-pscbs-0.65.0/tests/segmentByNonPairedPSCBS,medianDH.R:29: dataS ==> data
data/r-cran-pscbs-0.65.0/tests/segmentByNonPairedPSCBS,medianDH.R:32: dataS ==> data
data/r-cran-pscbs-0.65.0/tests/segmentByPairedPSCBS,DH.R:10: dataS ==> data
data/r-cran-pscbs-0.65.0/tests/segmentByPairedPSCBS,DH.R:14: dataS ==> data
data/r-cran-pscbs-0.65.0/tests/segmentByPairedPSCBS,DH.R:14: dataS ==> data
data/r-cran-pscbs-0.65.0/tests/segmentByPairedPSCBS,DH.R:20: dataS ==> data
data/r-cran-pscbs-0.65.0/tests/segmentByPairedPSCBS,DH.R:21: dataS ==> data
data/r-cran-pscbs-0.65.0/tests/segmentByPairedPSCBS,calls.R:14: dataS ==> data
data/r-cran-pscbs-0.65.0/tests/segmentByPairedPSCBS,calls.R:17: dataS ==> data
data/r-cran-pscbs-0.65.0/tests/segmentByPairedPSCBS,calls.R:24: dataS ==> data
data/r-cran-pscbs-0.65.0/tests/segmentByPairedPSCBS,calls.R:24: dataS ==> data
data/r-cran-pscbs-0.65.0/tests/segmentByPairedPSCBS,calls.R:35: dataS ==> data
data/r-cran-pscbs-0.65.0/tests/segmentByPairedPSCBS,calls.R:38: dataS ==> data
data/r-cran-pscbs-0.65.0/tests/segmentByPairedPSCBS,futures.R:13: dataS ==> data
data/r-cran-pscbs-0.65.0/tests/segmentByPairedPSCBS,futures.R:18: dataS ==> data
data/r-cran-pscbs-0.65.0/tests/segmentByPairedPSCBS,futures.R:18: dataS ==> data
data/r-cran-pscbs-0.65.0/tests/segmentByPairedPSCBS,futures.R:26: dataS ==> data
data/r-cran-pscbs-0.65.0/tests/segmentByPairedPSCBS,futures.R:32: dataS ==> data
data/r-cran-pscbs-0.65.0/tests/segmentByPairedPSCBS,futures.R:33: dataS ==> data
data/r-cran-pscbs-0.65.0/tests/segmentByPairedPSCBS,noNormalBAFs.R:10: dataS ==> data
data/r-cran-pscbs-0.65.0/tests/segmentByPairedPSCBS,noNormalBAFs.R:15: dataS ==> data
data/r-cran-pscbs-0.65.0/tests/segmentByPairedPSCBS,noNormalBAFs.R:15: dataS ==> data
data/r-cran-pscbs-0.65.0/tests/segmentByPairedPSCBS,noNormalBAFs.R:26: dataS ==> data
data/r-cran-pscbs-0.65.0/tests/segmentByPairedPSCBS,noNormalBAFs.R:28: dataS ==> data
data/r-cran-pscbs-0.65.0/tests/segmentByPairedPSCBS,report.R:20: dataS ==> data
data/r-cran-pscbs-0.65.0/tests/segmentByPairedPSCBS,report.R:23: dataS ==> data
data/r-cran-pscbs-0.65.0/tests/segmentByPairedPSCBS,report.R:23: dataS ==> data
data/r-cran-pscbs-0.65.0/tests/segmentByPairedPSCBS,report.R:25: dataS ==> data
data/r-cran-pscbs-0.65.0/tests/segmentByPairedPSCBS,report.R:27: dataS ==> data
data/r-cran-pscbs-0.65.0/tests/segmentByPairedPSCBS,report.R:31: dataS ==> data
data/r-cran-pscbs-0.65.0/tests/segmentByPairedPSCBS,seqOfSegmentsByDP.R:16: dataS ==> data
data/r-cran-pscbs-0.65.0/tests/segmentByPairedPSCBS,seqOfSegmentsByDP.R:21: dataS ==> data
data/r-cran-pscbs-0.65.0/tests/segmentByPairedPSCBS,seqOfSegmentsByDP.R:21: dataS ==> data
data/r-cran-pscbs-0.65.0/tests/segmentByPairedPSCBS,seqOfSegmentsByDP.R:32: dataS ==> data
data/r-cran-pscbs-0.65.0/tests/segmentByPairedPSCBS,seqOfSegmentsByDP.R:34: dataS ==> data
data/r-cran-pscbs-0.65.0/tests/segmentByPairedPSCBS,seqOfSegmentsByDP.R:37: dataS ==> data
data/r-cran-pscbs-0.65.0/tests/segmentByPairedPSCBS,seqOfSegmentsByDP.R:41: dataS ==> data
data/r-cran-pscbs-0.65.0/tests/segmentByPairedPSCBS.R:20: dataS ==> data
data/r-cran-pscbs-0.65.0/tests/segmentByPairedPSCBS.R:25: dataS ==> data
data/r-cran-pscbs-0.65.0/tests/segmentByPairedPSCBS.R:25: dataS ==> data
data/r-cran-pscbs-0.65.0/tests/segmentByPairedPSCBS.R:33: dataS ==> data
data/r-cran-pscbs-0.65.0/tests/segmentByPairedPSCBS.R:49: dataS ==> data
data/r-cran-pscbs-0.65.0/tests/segmentByPairedPSCBS.R:75: dataS ==> data
data/r-cran-pscbs-0.65.0/tests/segmentByPairedPSCBS.R:100: dataS ==> data
data/r-cran-pscbs-0.65.0/tests/segmentByPairedPSCBS.R:125: dataS ==> data
data/r-cran-pscbs-0.65.0/vignettes/CBS.tex.rsp:167: observered ==> observed
data/r-cran-pscbs-0.65.0/vignettes/CBS.tex.rsp:213: partical ==> partial, particle
data/r-cran-pscbs-0.65.0/vignettes/PairedPSCBS.tex.rsp:171: observered ==> observed
data/r-cran-pscbs-0.65.0/vignettes/PairedPSCBS.tex.rsp:284: choosen ==> chosen
data/r-cran-pscbs-0.65.0/vignettes/PairedPSCBS.tex.rsp:308: choosen ==> chosen