data/rdp-alignment-1.2.0/parseErrorAnalysis.py:465: tE ==> the, be, we
data/rdp-alignment-1.2.0/parseErrorAnalysis.py:466: tE ==> the, be, we
data/rdp-alignment-1.2.0/parseErrorAnalysis.py:595: positons ==> positions, positrons
data/rdp-alignment-1.2.0/nbproject/build-impl.xml:26: atleast ==> at least
data/rdp-alignment-1.2.0/nbproject/build-impl.xml:202: testng ==> testing
data/rdp-alignment-1.2.0/nbproject/build-impl.xml:203: testng ==> testing
data/rdp-alignment-1.2.0/nbproject/build-impl.xml:205: testng ==> testing
data/rdp-alignment-1.2.0/nbproject/build-impl.xml:208: testng ==> testing
data/rdp-alignment-1.2.0/nbproject/build-impl.xml:211: testng ==> testing
data/rdp-alignment-1.2.0/nbproject/build-impl.xml:211: testng ==> testing
data/rdp-alignment-1.2.0/nbproject/build-impl.xml:212: testng ==> testing
data/rdp-alignment-1.2.0/nbproject/build-impl.xml:214: testng ==> testing
data/rdp-alignment-1.2.0/nbproject/build-impl.xml:215: testng ==> testing
data/rdp-alignment-1.2.0/nbproject/build-impl.xml:426: testng ==> testing
data/rdp-alignment-1.2.0/nbproject/build-impl.xml:427: testng ==> testing
data/rdp-alignment-1.2.0/nbproject/build-impl.xml:434: testng ==> testing
data/rdp-alignment-1.2.0/nbproject/build-impl.xml:442: testng ==> testing
data/rdp-alignment-1.2.0/nbproject/build-impl.xml:442: testng ==> testing
data/rdp-alignment-1.2.0/nbproject/build-impl.xml:443: testng ==> testing
data/rdp-alignment-1.2.0/nbproject/build-impl.xml:443: testng ==> testing
data/rdp-alignment-1.2.0/nbproject/build-impl.xml:443: testng ==> testing
data/rdp-alignment-1.2.0/nbproject/build-impl.xml:443: testng ==> testing
data/rdp-alignment-1.2.0/nbproject/build-impl.xml:443: TestNG ==> testing
data/rdp-alignment-1.2.0/nbproject/build-impl.xml:450: testng ==> testing
data/rdp-alignment-1.2.0/nbproject/build-impl.xml:480: testng ==> testing
data/rdp-alignment-1.2.0/nbproject/build-impl.xml:488: testng ==> testing
data/rdp-alignment-1.2.0/nbproject/build-impl.xml:490: testng ==> testing
data/rdp-alignment-1.2.0/nbproject/build-impl.xml:585: testng ==> testing
data/rdp-alignment-1.2.0/nbproject/build-impl.xml:594: testng ==> testing
data/rdp-alignment-1.2.0/nbproject/build-impl.xml:599: testng ==> testing
data/rdp-alignment-1.2.0/nbproject/build-impl.xml:599: TestNG ==> testing
data/rdp-alignment-1.2.0/nbproject/build-impl.xml:603: testng ==> testing
data/rdp-alignment-1.2.0/nbproject/build-impl.xml:605: testng ==> testing
data/rdp-alignment-1.2.0/nbproject/build-impl.xml:606: testng ==> testing
data/rdp-alignment-1.2.0/nbproject/build-impl.xml:612: testng ==> testing
data/rdp-alignment-1.2.0/nbproject/build-impl.xml:646: testng ==> testing
data/rdp-alignment-1.2.0/src/edu/msu/cme/rdp/alignment/AlignmentMerger.java:174: begining ==> beginning
data/rdp-alignment-1.2.0/src/edu/msu/cme/rdp/alignment/hmm/HMMER3bParser.java:78: ALPH ==> ALPHA
data/rdp-alignment-1.2.0/src/edu/msu/cme/rdp/alignment/hmm/scoring/ForwardScorer.java:107: begining ==> beginning
data/rdp-alignment-1.2.0/src/edu/msu/cme/rdp/alignment/hmm/scoring/ForwardScorer.java:130: begining ==> beginning
data/rdp-alignment-1.2.0/src/edu/msu/cme/rdp/alignment/pairwise/ScoringMatrix.java:100: symetric ==> symmetric