data/roary-3.13.0+dfsg/CHANGELOG.md:81: dependancy ==> dependency
data/roary-3.13.0+dfsg/CHANGELOG.md:139: Cant ==> Can't
data/roary-3.13.0+dfsg/CHANGELOG.md:172: Cant ==> Can't
data/roary-3.13.0+dfsg/CHANGELOG.md:207: Couldnt ==> Couldn't
data/roary-3.13.0+dfsg/CHANGELOG.md:467: dependancy ==> dependency
data/roary-3.13.0+dfsg/CHANGELOG.md:476: dependancy ==> dependency
data/roary-3.13.0+dfsg/CHANGELOG.md:530: dependancy ==> dependency
data/roary-3.13.0+dfsg/CHANGELOG.md:569: dependancies ==> dependencies
data/roary-3.13.0+dfsg/CHANGELOG.md:584: Cant ==> Can't
data/roary-3.13.0+dfsg/CHANGELOG.md:692: dependancies ==> dependencies
data/roary-3.13.0+dfsg/CHANGELOG.md:783: doesnt ==> doesn't, does not
data/roary-3.13.0+dfsg/CHANGELOG.md:784: doesnt ==> doesn't, does not
data/roary-3.13.0+dfsg/CHANGELOG.md:796: dependancies ==> dependencies
data/roary-3.13.0+dfsg/CHANGELOG.md:892: dependancy ==> dependency
data/roary-3.13.0+dfsg/CHANGELOG.md:903: theres ==> there's
data/roary-3.13.0+dfsg/CHANGELOG.md:947: dependancy ==> dependency
data/roary-3.13.0+dfsg/CHANGELOG.md:952: inital ==> initial
data/roary-3.13.0+dfsg/README.md:68: dependancies ==> dependencies
data/roary-3.13.0+dfsg/README.md:99: wont ==> won't
data/roary-3.13.0+dfsg/README.md:146: verison ==> version
data/roary-3.13.0+dfsg/README.md:178: dependancies ==> dependencies
data/roary-3.13.0+dfsg/README.md:191: doesnt ==> doesn't, does not
data/roary-3.13.0+dfsg/lib/Bio/Roary/AnnotateGroups.pm:86: Couldnt ==> Couldn't
data/roary-3.13.0+dfsg/lib/Bio/Roary/AssemblyStatistics.pm:50: Couldnt ==> Couldn't
data/roary-3.13.0+dfsg/lib/Bio/Roary/ContigsToGeneIDsFromGFF.pm:35: Couldnt ==> Couldn't
data/roary-3.13.0+dfsg/lib/Bio/Roary/GroupLabels.pm:39: Couldnt ==> Couldn't
data/roary-3.13.0+dfsg/lib/Bio/Roary/GroupStatistics.pm:47: Couldnt ==> Couldn't
data/roary-3.13.0+dfsg/lib/Bio/Roary/ParallelAllAgainstAllBlast.pm:88: Cant ==> Can't
data/roary-3.13.0+dfsg/lib/Bio/Roary/PrepareInputFiles.pm:82: doesnt ==> doesn't, does not
data/roary-3.13.0+dfsg/lib/Bio/Roary/PrepareInputFiles.pm:82: isnt ==> isn't
data/roary-3.13.0+dfsg/lib/Bio/Roary/PresenceAbsenceMatrix.pm:42: Couldnt ==> Couldn't
data/roary-3.13.0+dfsg/lib/Bio/Roary/ReformatInputGFFs.pm:70: doesnt ==> doesn't, does not
data/roary-3.13.0+dfsg/lib/Bio/Roary/ReformatInputGFFs.pm:89: didnt ==> didn't
data/roary-3.13.0+dfsg/lib/Bio/Roary/ReformatInputGFFs.pm:110: Couldnt ==> Couldn't
data/roary-3.13.0+dfsg/lib/Bio/Roary/ReformatInputGFFs.pm:110: extention ==> extension
data/roary-3.13.0+dfsg/lib/Bio/Roary/ReformatInputGFFs.pm:169: doesnt ==> doesn't, does not
data/roary-3.13.0+dfsg/lib/Bio/Roary/SpreadsheetRole.pm:48: Couldnt ==> Couldn't
data/roary-3.13.0+dfsg/lib/Bio/Roary/UniqueGenesPerSample.pm:29: Couldnt ==> Couldn't
data/roary-3.13.0+dfsg/lib/Bio/Roary/UniqueGenesPerSample.pm:38: Couldnt ==> Couldn't
data/roary-3.13.0+dfsg/lib/Bio/Roary/UniqueGenesPerSample.pm:57: theres ==> there's
data/roary-3.13.0+dfsg/lib/Bio/Roary/PostAnalysis.pm:104: Transfering ==> Transferring
data/roary-3.13.0+dfsg/lib/Bio/Roary/PostAnalysis.pm:166: Theres ==> There's
data/roary-3.13.0+dfsg/lib/Bio/Roary/CommandLine/AssemblyStatistics.pm:83: Cant ==> Can't
data/roary-3.13.0+dfsg/lib/Bio/Roary/CommandLine/CreatePanGenome.pm:36: alignement ==> alignment
data/roary-3.13.0+dfsg/lib/Bio/Roary/CommandLine/CreatePanGenome.pm:42: doesnt ==> doesn't, does not
data/roary-3.13.0+dfsg/lib/Bio/Roary/CommandLine/CreatePanGenome.pm:47: dependancies ==> dependencies
data/roary-3.13.0+dfsg/lib/Bio/Roary/CommandLine/CreatePanGenome.pm:54: cant ==> can't
data/roary-3.13.0+dfsg/lib/Bio/Roary/CommandLine/ExtractProteomeFromGff.pm:70: Cant ==> Can't
data/roary-3.13.0+dfsg/lib/Bio/Roary/CommandLine/GeneAlignmentFromNucleotides.pm:56: Cant ==> Can't
data/roary-3.13.0+dfsg/lib/Bio/Roary/CommandLine/ParallelAllAgainstAllBlastp.pm:69: Cant ==> Can't
data/roary-3.13.0+dfsg/lib/Bio/Roary/CommandLine/QueryRoary.pm:72: Cant ==> Can't
data/roary-3.13.0+dfsg/lib/Bio/Roary/CommandLine/QueryRoary.pm:97: Cant ==> Can't
data/roary-3.13.0+dfsg/lib/Bio/Roary/CommandLine/Roary.pm:177: isnt ==> isn't
data/roary-3.13.0+dfsg/lib/Bio/Roary/CommandLine/Roary.pm:213: alignement ==> alignment
data/roary-3.13.0+dfsg/lib/Bio/Roary/CommandLine/Roary.pm:233: Cant ==> Can't
data/roary-3.13.0+dfsg/lib/Bio/Roary/CommandLine/Roary.pm:360: dependancies ==> dependencies
data/roary-3.13.0+dfsg/lib/Bio/Roary/CommandLine/Roary.pm:373: doesnt ==> doesn't, does not
data/roary-3.13.0+dfsg/lib/Bio/Roary/CommandLine/RoaryCoreAlignment.pm:63: Cant ==> Can't
data/roary-3.13.0+dfsg/lib/Bio/Roary/CommandLine/RoaryCoreAlignment.pm:71: Cant ==> Can't
data/roary-3.13.0+dfsg/lib/Bio/Roary/CommandLine/RoaryPostAnalysis.pm:214: usally ==> usually
data/roary-3.13.0+dfsg/lib/Bio/Roary/CommandLine/RoaryPostAnalysis.pm:225: alignement ==> alignment
data/roary-3.13.0+dfsg/lib/Bio/Roary/CommandLine/RoaryPostAnalysis.pm:226: alignement ==> alignment
data/roary-3.13.0+dfsg/lib/Bio/Roary/CommandLine/TransferAnnotationToGroups.pm:58: Cant ==> Can't
data/roary-3.13.0+dfsg/lib/Bio/Roary/CommandLine/TransferAnnotationToGroups.pm:63: Cant ==> Can't
data/roary-3.13.0+dfsg/lib/Bio/Roary/CommandLine/UniqueGenesPerSample.pm:54: Cant ==> Can't
data/roary-3.13.0+dfsg/lib/Bio/Roary/External/IterativeCdhit.pm:44: senario ==> scenario
data/roary-3.13.0+dfsg/lib/Bio/Roary/External/Mcl.pm:52: senario ==> scenario
data/roary-3.13.0+dfsg/lib/Bio/Roary/Output/BlastIdentityFrequency.pm:33: Couldnt ==> Couldn't
data/roary-3.13.0+dfsg/lib/Bio/Roary/Output/BlastIdentityFrequency.pm:42: Couldnt ==> Couldn't
data/roary-3.13.0+dfsg/lib/Bio/Roary/Output/CoreGeneAlignmentCoordinatesEMBL.pm:41: Couldnt ==> Couldn't
data/roary-3.13.0+dfsg/lib/Bio/Roary/Output/DifferenceBetweenSets.pm:3: whats ==> what's
data/roary-3.13.0+dfsg/lib/Bio/Roary/Output/DifferenceBetweenSets.pm:3: whats ==> what's
data/roary-3.13.0+dfsg/lib/Bio/Roary/Output/DifferenceBetweenSets.pm:7: whats ==> what's
data/roary-3.13.0+dfsg/lib/Bio/Roary/Output/DifferenceBetweenSets.pm:7: whats ==> what's
data/roary-3.13.0+dfsg/lib/Bio/Roary/Output/EmblGroups.pm:43: Couldnt ==> Couldn't
data/roary-3.13.0+dfsg/lib/Bio/Roary/Output/EmblGroups.pm:50: Couldnt ==> Couldn't
data/roary-3.13.0+dfsg/lib/Bio/Roary/Output/EmblGroups.pm:99: coordindates ==> coordinates
data/roary-3.13.0+dfsg/lib/Bio/Roary/Output/EmblGroups.pm:116: coordindates ==> coordinates
data/roary-3.13.0+dfsg/lib/Bio/Roary/Output/EmblGroups.pm:175: coordindates ==> coordinates
data/roary-3.13.0+dfsg/lib/Bio/Roary/Output/EmblGroups.pm:180: coordindates ==> coordinates
data/roary-3.13.0+dfsg/lib/Bio/Roary/Output/GroupsMultifastaNucleotide.pm:79: Theres ==> There's
data/roary-3.13.0+dfsg/lib/Bio/Roary/Output/GroupsMultifastaProtein.pm:37: shouldnt ==> shouldn't
data/roary-3.13.0+dfsg/t/Bio/Roary/CombinedProteome.t:37: Cant ==> Can't
data/roary-3.13.0+dfsg/t/Bio/Roary/CombinedProteome.t:37: existant ==> existent
data/roary-3.13.0+dfsg/t/Bio/Roary/OrderGenes.t:136: shouldnt ==> shouldn't
data/roary-3.13.0+dfsg/t/Bio/Roary/ReformatInputGFFs.t:22: shouldnt ==> shouldn't
data/roary-3.13.0+dfsg/t/Bio/Roary/ReformatInputGFFs.t:22: arent ==> aren't
data/roary-3.13.0+dfsg/t/Bio/Roary/ReformatInputGFFs.t:26: shouldnt ==> shouldn't
data/roary-3.13.0+dfsg/t/Bio/Roary/ReformatInputGFFs.t:42: thats ==> that's
data/roary-3.13.0+dfsg/t/Bio/Roary/ReformatInputGFFs.t:49: shouldnt ==> shouldn't
data/roary-3.13.0+dfsg/t/Bio/Roary/ReformatInputGFFs.t:51: thats ==> that's
data/roary-3.13.0+dfsg/t/Bio/Roary/CommandLine/RoaryReorderSpreadsheet.t:17: tre ==> tree
data/roary-3.13.0+dfsg/t/Bio/Roary/CommandLine/RoaryReorderSpreadsheet.t:19: tre ==> tree
data/roary-3.13.0+dfsg/t/Bio/Roary/CommandLine/RoaryReorderSpreadsheet.t:21: tre ==> tree
data/roary-3.13.0+dfsg/t/Bio/Roary/CommandLine/RoaryReorderSpreadsheet.t:24: tre ==> tree
data/roary-3.13.0+dfsg/t/Bio/Roary/CommandLine/RoaryReorderSpreadsheet.t:26: tre ==> tree
data/roary-3.13.0+dfsg/t/Bio/Roary/CommandLine/RoaryReorderSpreadsheet.t:28: tre ==> tree
data/roary-3.13.0+dfsg/t/Bio/Roary/CommandLine/RoaryReorderSpreadsheet.t:30: tre ==> tree
data/roary-3.13.0+dfsg/t/Bio/Roary/CommandLine/RoaryReorderSpreadsheet.t:32: tre ==> tree
data/roary-3.13.0+dfsg/t/Bio/Roary/CommandLine/RoaryReorderSpreadsheet.t:35: tre ==> tree
data/roary-3.13.0+dfsg/t/Bio/Roary/CommandLine/RoaryReorderSpreadsheet.t:37: tre ==> tree
data/roary-3.13.0+dfsg/t/Bio/Roary/CommandLine/RoaryReorderSpreadsheet.t:39: tre ==> tree
data/roary-3.13.0+dfsg/t/Bio/Roary/CommandLine/RoaryReorderSpreadsheet.t:41: tre ==> tree
data/roary-3.13.0+dfsg/t/Bio/Roary/CommandLine/RoaryReorderSpreadsheet.t:43: tre ==> tree
data/roary-3.13.0+dfsg/t/Bio/Roary/Output/CoreGeneAlignmentCoorindatesEMBL.t:33: theres ==> there's
data/roary-3.13.0+dfsg/t/Bio/Roary/Output/GroupsMultifastas.t:35: contect ==> contact, context, connect
data/roary-3.13.0+dfsg/t/Bio/Roary/Output/GroupsMultifastas.t:39: contect ==> contact, context, connect
data/roary-3.13.0+dfsg/t/Bio/Roary/Output/GroupsMultifastasNucleotide.t:63: doesnt ==> doesn't, does not
data/roary-3.13.0+dfsg/t/Bio/Roary/Output/GroupsMultifastasNucleotide.t:64: doesnt ==> doesn't, does not
data/roary-3.13.0+dfsg/t/data/expected_some_different_output:16: nanE ==> name
data/roary-3.13.0+dfsg/t/data/real_data_1.gff:45: nanE ==> name
data/roary-3.13.0+dfsg/t/data/real_data_2.gff:45: nanE ==> name
data/roary-3.13.0+dfsg/.pc/rename_R_script.patch/lib/Bio/Roary/PostAnalysis.pm:104: Transfering ==> Transferring
data/roary-3.13.0+dfsg/.pc/rename_R_script.patch/lib/Bio/Roary/PostAnalysis.pm:166: Theres ==> There's
data/roary-3.13.0+dfsg/.pc/use-debian-perl-path.patch/t/Bio/Roary/CombinedProteome.t:37: Cant ==> Can't
data/roary-3.13.0+dfsg/.pc/use-debian-perl-path.patch/t/Bio/Roary/CombinedProteome.t:37: existant ==> existent
data/roary-3.13.0+dfsg/.pc/use-debian-perl-path.patch/t/Bio/Roary/OrderGenes.t:136: shouldnt ==> shouldn't
data/roary-3.13.0+dfsg/.pc/use-debian-perl-path.patch/t/Bio/Roary/ReformatInputGFFs.t:22: shouldnt ==> shouldn't
data/roary-3.13.0+dfsg/.pc/use-debian-perl-path.patch/t/Bio/Roary/ReformatInputGFFs.t:22: arent ==> aren't
data/roary-3.13.0+dfsg/.pc/use-debian-perl-path.patch/t/Bio/Roary/ReformatInputGFFs.t:26: shouldnt ==> shouldn't
data/roary-3.13.0+dfsg/.pc/use-debian-perl-path.patch/t/Bio/Roary/ReformatInputGFFs.t:42: thats ==> that's
data/roary-3.13.0+dfsg/.pc/use-debian-perl-path.patch/t/Bio/Roary/ReformatInputGFFs.t:49: shouldnt ==> shouldn't
data/roary-3.13.0+dfsg/.pc/use-debian-perl-path.patch/t/Bio/Roary/ReformatInputGFFs.t:51: thats ==> that's
data/roary-3.13.0+dfsg/.pc/use-debian-perl-path.patch/t/Bio/Roary/CommandLine/RoaryReorderSpreadsheet.t:17: tre ==> tree
data/roary-3.13.0+dfsg/.pc/use-debian-perl-path.patch/t/Bio/Roary/CommandLine/RoaryReorderSpreadsheet.t:19: tre ==> tree
data/roary-3.13.0+dfsg/.pc/use-debian-perl-path.patch/t/Bio/Roary/CommandLine/RoaryReorderSpreadsheet.t:21: tre ==> tree
data/roary-3.13.0+dfsg/.pc/use-debian-perl-path.patch/t/Bio/Roary/CommandLine/RoaryReorderSpreadsheet.t:24: tre ==> tree
data/roary-3.13.0+dfsg/.pc/use-debian-perl-path.patch/t/Bio/Roary/CommandLine/RoaryReorderSpreadsheet.t:26: tre ==> tree
data/roary-3.13.0+dfsg/.pc/use-debian-perl-path.patch/t/Bio/Roary/CommandLine/RoaryReorderSpreadsheet.t:28: tre ==> tree
data/roary-3.13.0+dfsg/.pc/use-debian-perl-path.patch/t/Bio/Roary/CommandLine/RoaryReorderSpreadsheet.t:30: tre ==> tree
data/roary-3.13.0+dfsg/.pc/use-debian-perl-path.patch/t/Bio/Roary/CommandLine/RoaryReorderSpreadsheet.t:32: tre ==> tree
data/roary-3.13.0+dfsg/.pc/use-debian-perl-path.patch/t/Bio/Roary/CommandLine/RoaryReorderSpreadsheet.t:35: tre ==> tree
data/roary-3.13.0+dfsg/.pc/use-debian-perl-path.patch/t/Bio/Roary/CommandLine/RoaryReorderSpreadsheet.t:37: tre ==> tree
data/roary-3.13.0+dfsg/.pc/use-debian-perl-path.patch/t/Bio/Roary/CommandLine/RoaryReorderSpreadsheet.t:39: tre ==> tree
data/roary-3.13.0+dfsg/.pc/use-debian-perl-path.patch/t/Bio/Roary/CommandLine/RoaryReorderSpreadsheet.t:41: tre ==> tree
data/roary-3.13.0+dfsg/.pc/use-debian-perl-path.patch/t/Bio/Roary/CommandLine/RoaryReorderSpreadsheet.t:43: tre ==> tree
data/roary-3.13.0+dfsg/.pc/use-debian-perl-path.patch/t/Bio/Roary/Output/CoreGeneAlignmentCoorindatesEMBL.t:33: theres ==> there's
data/roary-3.13.0+dfsg/.pc/use-debian-perl-path.patch/t/Bio/Roary/Output/GroupsMultifastas.t:35: contect ==> contact, context, connect
data/roary-3.13.0+dfsg/.pc/use-debian-perl-path.patch/t/Bio/Roary/Output/GroupsMultifastas.t:39: contect ==> contact, context, connect
data/roary-3.13.0+dfsg/.pc/use-debian-perl-path.patch/t/Bio/Roary/Output/GroupsMultifastasNucleotide.t:63: doesnt ==> doesn't, does not
data/roary-3.13.0+dfsg/.pc/use-debian-perl-path.patch/t/Bio/Roary/Output/GroupsMultifastasNucleotide.t:64: doesnt ==> doesn't, does not