data/rsem-1.3.3+dfsg/BamConverter.h:206: orignal ==> original
data/rsem-1.3.3+dfsg/EM.cpp:315: fo ==> of, for
data/rsem-1.3.3+dfsg/EM.cpp:485: fo ==> of, for
data/rsem-1.3.3+dfsg/EM.cpp:486: fo ==> of, for
data/rsem-1.3.3+dfsg/EM.cpp:489: fo ==> of, for
data/rsem-1.3.3+dfsg/EM.cpp:490: fo ==> of, for
data/rsem-1.3.3+dfsg/EM.cpp:497: fo ==> of, for
data/rsem-1.3.3+dfsg/EM.cpp:498: fo ==> of, for
data/rsem-1.3.3+dfsg/EM.cpp:500: fo ==> of, for
data/rsem-1.3.3+dfsg/EM.cpp:618: fo ==> of, for
data/rsem-1.3.3+dfsg/EM.cpp:620: fo ==> of, for
data/rsem-1.3.3+dfsg/EM.cpp:621: fo ==> of, for
data/rsem-1.3.3+dfsg/EM.cpp:623: fo ==> of, for
data/rsem-1.3.3+dfsg/EM.cpp:624: fo ==> of, for
data/rsem-1.3.3+dfsg/Gibbs.cpp:31: fo ==> of, for
data/rsem-1.3.3+dfsg/Gibbs.cpp:226: fo ==> of, for
data/rsem-1.3.3+dfsg/Gibbs.cpp:257: fo ==> of, for
data/rsem-1.3.3+dfsg/Gibbs.cpp:259: fo ==> of, for
data/rsem-1.3.3+dfsg/Gibbs.cpp:261: fo ==> of, for
data/rsem-1.3.3+dfsg/Gibbs.cpp:315: fo ==> of, for
data/rsem-1.3.3+dfsg/Gibbs.cpp:373: fo ==> of, for
data/rsem-1.3.3+dfsg/LenDist.h:111: interger ==> integer
data/rsem-1.3.3+dfsg/LenDist.h:235: fo ==> of, for
data/rsem-1.3.3+dfsg/LenDist.h:236: fo ==> of, for
data/rsem-1.3.3+dfsg/LenDist.h:238: fo ==> of, for
data/rsem-1.3.3+dfsg/LenDist.h:240: fo ==> of, for
data/rsem-1.3.3+dfsg/NoiseProfile.h:129: fo ==> of, for
data/rsem-1.3.3+dfsg/NoiseProfile.h:130: fo ==> of, for
data/rsem-1.3.3+dfsg/NoiseProfile.h:132: fo ==> of, for
data/rsem-1.3.3+dfsg/NoiseProfile.h:134: fo ==> of, for
data/rsem-1.3.3+dfsg/NoiseQProfile.h:145: fo ==> of, for
data/rsem-1.3.3+dfsg/NoiseQProfile.h:146: fo ==> of, for
data/rsem-1.3.3+dfsg/NoiseQProfile.h:148: fo ==> of, for
data/rsem-1.3.3+dfsg/NoiseQProfile.h:149: fo ==> of, for
data/rsem-1.3.3+dfsg/Orientation.h:31: fo ==> of, for
data/rsem-1.3.3+dfsg/Orientation.h:32: fo ==> of, for
data/rsem-1.3.3+dfsg/PairedEndModel.h:335: fo ==> of, for
data/rsem-1.3.3+dfsg/PairedEndModel.h:337: fo ==> of, for
data/rsem-1.3.3+dfsg/PairedEndModel.h:338: fo ==> of, for
data/rsem-1.3.3+dfsg/PairedEndModel.h:340: fo ==> of, for
data/rsem-1.3.3+dfsg/PairedEndModel.h:340: fo ==> of, for
data/rsem-1.3.3+dfsg/PairedEndModel.h:341: fo ==> of, for
data/rsem-1.3.3+dfsg/PairedEndModel.h:341: fo ==> of, for
data/rsem-1.3.3+dfsg/PairedEndModel.h:342: fo ==> of, for
data/rsem-1.3.3+dfsg/PairedEndModel.h:342: fo ==> of, for
data/rsem-1.3.3+dfsg/PairedEndModel.h:343: fo ==> of, for
data/rsem-1.3.3+dfsg/PairedEndModel.h:343: fo ==> of, for
data/rsem-1.3.3+dfsg/PairedEndModel.h:344: fo ==> of, for
data/rsem-1.3.3+dfsg/PairedEndModel.h:344: fo ==> of, for
data/rsem-1.3.3+dfsg/PairedEndModel.h:345: fo ==> of, for
data/rsem-1.3.3+dfsg/PairedEndModel.h:348: fo ==> of, for
data/rsem-1.3.3+dfsg/PairedEndModel.h:350: fo ==> of, for
data/rsem-1.3.3+dfsg/PairedEndModel.h:352: fo ==> of, for
data/rsem-1.3.3+dfsg/PairedEndModel.h:355: fo ==> of, for
data/rsem-1.3.3+dfsg/PairedEndQModel.h:347: fo ==> of, for
data/rsem-1.3.3+dfsg/PairedEndQModel.h:349: fo ==> of, for
data/rsem-1.3.3+dfsg/PairedEndQModel.h:350: fo ==> of, for
data/rsem-1.3.3+dfsg/PairedEndQModel.h:352: fo ==> of, for
data/rsem-1.3.3+dfsg/PairedEndQModel.h:352: fo ==> of, for
data/rsem-1.3.3+dfsg/PairedEndQModel.h:353: fo ==> of, for
data/rsem-1.3.3+dfsg/PairedEndQModel.h:353: fo ==> of, for
data/rsem-1.3.3+dfsg/PairedEndQModel.h:354: fo ==> of, for
data/rsem-1.3.3+dfsg/PairedEndQModel.h:354: fo ==> of, for
data/rsem-1.3.3+dfsg/PairedEndQModel.h:355: fo ==> of, for
data/rsem-1.3.3+dfsg/PairedEndQModel.h:355: fo ==> of, for
data/rsem-1.3.3+dfsg/PairedEndQModel.h:356: fo ==> of, for
data/rsem-1.3.3+dfsg/PairedEndQModel.h:356: fo ==> of, for
data/rsem-1.3.3+dfsg/PairedEndQModel.h:357: fo ==> of, for
data/rsem-1.3.3+dfsg/PairedEndQModel.h:357: fo ==> of, for
data/rsem-1.3.3+dfsg/PairedEndQModel.h:358: fo ==> of, for
data/rsem-1.3.3+dfsg/PairedEndQModel.h:361: fo ==> of, for
data/rsem-1.3.3+dfsg/PairedEndQModel.h:363: fo ==> of, for
data/rsem-1.3.3+dfsg/PairedEndQModel.h:365: fo ==> of, for
data/rsem-1.3.3+dfsg/PairedEndQModel.h:368: fo ==> of, for
data/rsem-1.3.3+dfsg/Profile.h:151: fo ==> of, for
data/rsem-1.3.3+dfsg/Profile.h:152: fo ==> of, for
data/rsem-1.3.3+dfsg/Profile.h:156: fo ==> of, for
data/rsem-1.3.3+dfsg/Profile.h:157: fo ==> of, for
data/rsem-1.3.3+dfsg/Profile.h:159: fo ==> of, for
data/rsem-1.3.3+dfsg/QProfile.h:139: fo ==> of, for
data/rsem-1.3.3+dfsg/QProfile.h:140: fo ==> of, for
data/rsem-1.3.3+dfsg/QProfile.h:144: fo ==> of, for
data/rsem-1.3.3+dfsg/QProfile.h:145: fo ==> of, for
data/rsem-1.3.3+dfsg/QProfile.h:147: fo ==> of, for
data/rsem-1.3.3+dfsg/QualDist.h:106: fo ==> of, for
data/rsem-1.3.3+dfsg/QualDist.h:107: fo ==> of, for
data/rsem-1.3.3+dfsg/QualDist.h:108: fo ==> of, for
data/rsem-1.3.3+dfsg/QualDist.h:109: fo ==> of, for
data/rsem-1.3.3+dfsg/QualDist.h:111: fo ==> of, for
data/rsem-1.3.3+dfsg/QualDist.h:112: fo ==> of, for
data/rsem-1.3.3+dfsg/README.md:116: annotaions ==> annotations
data/rsem-1.3.3+dfsg/README.md:484: millon ==> million
data/rsem-1.3.3+dfsg/RSPD.h:171: fo ==> of, for
data/rsem-1.3.3+dfsg/RSPD.h:172: fo ==> of, for
data/rsem-1.3.3+dfsg/RSPD.h:174: fo ==> of, for
data/rsem-1.3.3+dfsg/RSPD.h:176: fo ==> of, for
data/rsem-1.3.3+dfsg/RSPD.h:178: fo ==> of, for
data/rsem-1.3.3+dfsg/RefSeq.h:107: seqences ==> sequences
data/rsem-1.3.3+dfsg/SingleModel.h:371: fo ==> of, for
data/rsem-1.3.3+dfsg/SingleModel.h:373: fo ==> of, for
data/rsem-1.3.3+dfsg/SingleModel.h:374: fo ==> of, for
data/rsem-1.3.3+dfsg/SingleModel.h:376: fo ==> of, for
data/rsem-1.3.3+dfsg/SingleModel.h:376: fo ==> of, for
data/rsem-1.3.3+dfsg/SingleModel.h:377: fo ==> of, for
data/rsem-1.3.3+dfsg/SingleModel.h:377: fo ==> of, for
data/rsem-1.3.3+dfsg/SingleModel.h:379: fo ==> of, for
data/rsem-1.3.3+dfsg/SingleModel.h:380: fo ==> of, for
data/rsem-1.3.3+dfsg/SingleModel.h:382: fo ==> of, for
data/rsem-1.3.3+dfsg/SingleModel.h:383: fo ==> of, for
data/rsem-1.3.3+dfsg/SingleModel.h:384: fo ==> of, for
data/rsem-1.3.3+dfsg/SingleModel.h:384: fo ==> of, for
data/rsem-1.3.3+dfsg/SingleModel.h:385: fo ==> of, for
data/rsem-1.3.3+dfsg/SingleModel.h:385: fo ==> of, for
data/rsem-1.3.3+dfsg/SingleModel.h:386: fo ==> of, for
data/rsem-1.3.3+dfsg/SingleModel.h:389: fo ==> of, for
data/rsem-1.3.3+dfsg/SingleModel.h:391: fo ==> of, for
data/rsem-1.3.3+dfsg/SingleModel.h:393: fo ==> of, for
data/rsem-1.3.3+dfsg/SingleModel.h:396: fo ==> of, for
data/rsem-1.3.3+dfsg/SingleQModel.h:384: fo ==> of, for
data/rsem-1.3.3+dfsg/SingleQModel.h:386: fo ==> of, for
data/rsem-1.3.3+dfsg/SingleQModel.h:387: fo ==> of, for
data/rsem-1.3.3+dfsg/SingleQModel.h:389: fo ==> of, for
data/rsem-1.3.3+dfsg/SingleQModel.h:389: fo ==> of, for
data/rsem-1.3.3+dfsg/SingleQModel.h:390: fo ==> of, for
data/rsem-1.3.3+dfsg/SingleQModel.h:390: fo ==> of, for
data/rsem-1.3.3+dfsg/SingleQModel.h:392: fo ==> of, for
data/rsem-1.3.3+dfsg/SingleQModel.h:393: fo ==> of, for
data/rsem-1.3.3+dfsg/SingleQModel.h:395: fo ==> of, for
data/rsem-1.3.3+dfsg/SingleQModel.h:396: fo ==> of, for
data/rsem-1.3.3+dfsg/SingleQModel.h:397: fo ==> of, for
data/rsem-1.3.3+dfsg/SingleQModel.h:397: fo ==> of, for
data/rsem-1.3.3+dfsg/SingleQModel.h:398: fo ==> of, for
data/rsem-1.3.3+dfsg/SingleQModel.h:398: fo ==> of, for
data/rsem-1.3.3+dfsg/SingleQModel.h:399: fo ==> of, for
data/rsem-1.3.3+dfsg/SingleQModel.h:399: fo ==> of, for
data/rsem-1.3.3+dfsg/SingleQModel.h:400: fo ==> of, for
data/rsem-1.3.3+dfsg/SingleQModel.h:403: fo ==> of, for
data/rsem-1.3.3+dfsg/SingleQModel.h:405: fo ==> of, for
data/rsem-1.3.3+dfsg/SingleQModel.h:407: fo ==> of, for
data/rsem-1.3.3+dfsg/SingleQModel.h:410: fo ==> of, for
data/rsem-1.3.3+dfsg/Transcripts.h:138: fo ==> of, for
data/rsem-1.3.3+dfsg/Transcripts.h:140: fo ==> of, for
data/rsem-1.3.3+dfsg/Transcripts.h:141: fo ==> of, for
data/rsem-1.3.3+dfsg/WHAT_IS_NEW:5: maked ==> marked, made
data/rsem-1.3.3+dfsg/WHAT_IS_NEW:7: agains ==> against, again
data/rsem-1.3.3+dfsg/WHAT_IS_NEW:136: Splitted ==> Split
data/rsem-1.3.3+dfsg/WriteResults.h:127: fo ==> of, for
data/rsem-1.3.3+dfsg/WriteResults.h:226: fo ==> of, for
data/rsem-1.3.3+dfsg/WriteResults.h:230: fo ==> of, for
data/rsem-1.3.3+dfsg/WriteResults.h:232: fo ==> of, for
data/rsem-1.3.3+dfsg/WriteResults.h:233: fo ==> of, for
data/rsem-1.3.3+dfsg/WriteResults.h:238: fo ==> of, for
data/rsem-1.3.3+dfsg/WriteResults.h:240: fo ==> of, for
data/rsem-1.3.3+dfsg/WriteResults.h:241: fo ==> of, for
data/rsem-1.3.3+dfsg/WriteResults.h:244: fo ==> of, for
data/rsem-1.3.3+dfsg/WriteResults.h:246: fo ==> of, for
data/rsem-1.3.3+dfsg/WriteResults.h:248: fo ==> of, for
data/rsem-1.3.3+dfsg/WriteResults.h:250: fo ==> of, for
data/rsem-1.3.3+dfsg/WriteResults.h:252: fo ==> of, for
data/rsem-1.3.3+dfsg/WriteResults.h:254: fo ==> of, for
data/rsem-1.3.3+dfsg/WriteResults.h:255: fo ==> of, for
data/rsem-1.3.3+dfsg/WriteResults.h:260: fo ==> of, for
data/rsem-1.3.3+dfsg/WriteResults.h:263: fo ==> of, for
data/rsem-1.3.3+dfsg/WriteResults.h:267: fo ==> of, for
data/rsem-1.3.3+dfsg/WriteResults.h:271: fo ==> of, for
data/rsem-1.3.3+dfsg/WriteResults.h:274: fo ==> of, for
data/rsem-1.3.3+dfsg/WriteResults.h:276: fo ==> of, for
data/rsem-1.3.3+dfsg/WriteResults.h:278: fo ==> of, for
data/rsem-1.3.3+dfsg/WriteResults.h:280: fo ==> of, for
data/rsem-1.3.3+dfsg/WriteResults.h:282: fo ==> of, for
data/rsem-1.3.3+dfsg/WriteResults.h:284: fo ==> of, for
data/rsem-1.3.3+dfsg/WriteResults.h:286: fo ==> of, for
data/rsem-1.3.3+dfsg/WriteResults.h:287: fo ==> of, for
data/rsem-1.3.3+dfsg/WriteResults.h:291: fo ==> of, for
data/rsem-1.3.3+dfsg/WriteResults.h:294: fo ==> of, for
data/rsem-1.3.3+dfsg/WriteResults.h:298: fo ==> of, for
data/rsem-1.3.3+dfsg/WriteResults.h:301: fo ==> of, for
data/rsem-1.3.3+dfsg/WriteResults.h:303: fo ==> of, for
data/rsem-1.3.3+dfsg/WriteResults.h:305: fo ==> of, for
data/rsem-1.3.3+dfsg/WriteResults.h:307: fo ==> of, for
data/rsem-1.3.3+dfsg/WriteResults.h:309: fo ==> of, for
data/rsem-1.3.3+dfsg/WriteResults.h:311: fo ==> of, for
data/rsem-1.3.3+dfsg/WriteResults.h:312: fo ==> of, for
data/rsem-1.3.3+dfsg/WriteResults.h:317: fo ==> of, for
data/rsem-1.3.3+dfsg/WriteResults.h:321: fo ==> of, for
data/rsem-1.3.3+dfsg/WriteResults.h:323: fo ==> of, for
data/rsem-1.3.3+dfsg/WriteResults.h:324: fo ==> of, for
data/rsem-1.3.3+dfsg/WriteResults.h:333: fo ==> of, for
data/rsem-1.3.3+dfsg/WriteResults.h:334: fo ==> of, for
data/rsem-1.3.3+dfsg/WriteResults.h:336: fo ==> of, for
data/rsem-1.3.3+dfsg/WriteResults.h:340: fo ==> of, for
data/rsem-1.3.3+dfsg/WriteResults.h:343: fo ==> of, for
data/rsem-1.3.3+dfsg/WriteResults.h:345: fo ==> of, for
data/rsem-1.3.3+dfsg/WriteResults.h:347: fo ==> of, for
data/rsem-1.3.3+dfsg/WriteResults.h:349: fo ==> of, for
data/rsem-1.3.3+dfsg/WriteResults.h:351: fo ==> of, for
data/rsem-1.3.3+dfsg/WriteResults.h:352: fo ==> of, for
data/rsem-1.3.3+dfsg/WriteResults.h:359: fo ==> of, for
data/rsem-1.3.3+dfsg/WriteResults.h:410: fo ==> of, for
data/rsem-1.3.3+dfsg/WriteResults.h:411: fo ==> of, for
data/rsem-1.3.3+dfsg/WriteResults.h:414: fo ==> of, for
data/rsem-1.3.3+dfsg/WriteResults.h:416: fo ==> of, for
data/rsem-1.3.3+dfsg/WriteResults.h:418: fo ==> of, for
data/rsem-1.3.3+dfsg/WriteResults.h:420: fo ==> of, for
data/rsem-1.3.3+dfsg/WriteResults.h:422: fo ==> of, for
data/rsem-1.3.3+dfsg/WriteResults.h:423: fo ==> of, for
data/rsem-1.3.3+dfsg/WriteResults.h:428: fo ==> of, for
data/rsem-1.3.3+dfsg/WriteResults.h:429: fo ==> of, for
data/rsem-1.3.3+dfsg/WriteResults.h:432: fo ==> of, for
data/rsem-1.3.3+dfsg/WriteResults.h:434: fo ==> of, for
data/rsem-1.3.3+dfsg/WriteResults.h:436: fo ==> of, for
data/rsem-1.3.3+dfsg/WriteResults.h:438: fo ==> of, for
data/rsem-1.3.3+dfsg/WriteResults.h:440: fo ==> of, for
data/rsem-1.3.3+dfsg/WriteResults.h:442: fo ==> of, for
data/rsem-1.3.3+dfsg/WriteResults.h:443: fo ==> of, for
data/rsem-1.3.3+dfsg/WriteResults.h:447: fo ==> of, for
data/rsem-1.3.3+dfsg/WriteResults.h:448: fo ==> of, for
data/rsem-1.3.3+dfsg/WriteResults.h:451: fo ==> of, for
data/rsem-1.3.3+dfsg/WriteResults.h:453: fo ==> of, for
data/rsem-1.3.3+dfsg/WriteResults.h:455: fo ==> of, for
data/rsem-1.3.3+dfsg/WriteResults.h:457: fo ==> of, for
data/rsem-1.3.3+dfsg/WriteResults.h:459: fo ==> of, for
data/rsem-1.3.3+dfsg/WriteResults.h:460: fo ==> of, for
data/rsem-1.3.3+dfsg/WriteResults.h:465: fo ==> of, for
data/rsem-1.3.3+dfsg/WriteResults.h:466: fo ==> of, for
data/rsem-1.3.3+dfsg/WriteResults.h:469: fo ==> of, for
data/rsem-1.3.3+dfsg/WriteResults.h:471: fo ==> of, for
data/rsem-1.3.3+dfsg/WriteResults.h:473: fo ==> of, for
data/rsem-1.3.3+dfsg/WriteResults.h:475: fo ==> of, for
data/rsem-1.3.3+dfsg/WriteResults.h:476: fo ==> of, for
data/rsem-1.3.3+dfsg/WriteResults.h:483: fo ==> of, for
data/rsem-1.3.3+dfsg/WriteResults.h:585: fo ==> of, for
data/rsem-1.3.3+dfsg/WriteResults.h:586: fo ==> of, for
data/rsem-1.3.3+dfsg/WriteResults.h:589: fo ==> of, for
data/rsem-1.3.3+dfsg/WriteResults.h:592: fo ==> of, for
data/rsem-1.3.3+dfsg/WriteResults.h:597: fo ==> of, for
data/rsem-1.3.3+dfsg/WriteResults.h:598: fo ==> of, for
data/rsem-1.3.3+dfsg/WriteResults.h:602: fo ==> of, for
data/rsem-1.3.3+dfsg/WriteResults.h:609: fo ==> of, for
data/rsem-1.3.3+dfsg/WriteResults.h:613: fo ==> of, for
data/rsem-1.3.3+dfsg/WriteResults.h:617: fo ==> of, for
data/rsem-1.3.3+dfsg/WriteResults.h:618: fo ==> of, for
data/rsem-1.3.3+dfsg/WriteResults.h:622: fo ==> of, for
data/rsem-1.3.3+dfsg/WriteResults.h:627: fo ==> of, for
data/rsem-1.3.3+dfsg/WriteResults.h:628: fo ==> of, for
data/rsem-1.3.3+dfsg/WriteResults.h:632: fo ==> of, for
data/rsem-1.3.3+dfsg/WriteResults.h:634: fo ==> of, for
data/rsem-1.3.3+dfsg/calcCI.cpp:146: ommit ==> omit
data/rsem-1.3.3+dfsg/calcCI.cpp:388: fo ==> of, for
data/rsem-1.3.3+dfsg/calcCI.cpp:447: fo ==> of, for
data/rsem-1.3.3+dfsg/calcCI.cpp:449: fo ==> of, for
data/rsem-1.3.3+dfsg/calcCI.cpp:451: fo ==> of, for
data/rsem-1.3.3+dfsg/calcCI.cpp:453: fo ==> of, for
data/rsem-1.3.3+dfsg/calcCI.cpp:455: fo ==> of, for
data/rsem-1.3.3+dfsg/calcCI.cpp:457: fo ==> of, for
data/rsem-1.3.3+dfsg/calcCI.cpp:459: fo ==> of, for
data/rsem-1.3.3+dfsg/calcCI.cpp:460: fo ==> of, for
data/rsem-1.3.3+dfsg/calcCI.cpp:465: fo ==> of, for
data/rsem-1.3.3+dfsg/calcCI.cpp:467: fo ==> of, for
data/rsem-1.3.3+dfsg/calcCI.cpp:469: fo ==> of, for
data/rsem-1.3.3+dfsg/calcCI.cpp:471: fo ==> of, for
data/rsem-1.3.3+dfsg/calcCI.cpp:473: fo ==> of, for
data/rsem-1.3.3+dfsg/calcCI.cpp:475: fo ==> of, for
data/rsem-1.3.3+dfsg/calcCI.cpp:477: fo ==> of, for
data/rsem-1.3.3+dfsg/calcCI.cpp:478: fo ==> of, for
data/rsem-1.3.3+dfsg/calcCI.cpp:483: fo ==> of, for
data/rsem-1.3.3+dfsg/calcCI.cpp:485: fo ==> of, for
data/rsem-1.3.3+dfsg/calcCI.cpp:487: fo ==> of, for
data/rsem-1.3.3+dfsg/calcCI.cpp:489: fo ==> of, for
data/rsem-1.3.3+dfsg/calcCI.cpp:491: fo ==> of, for
data/rsem-1.3.3+dfsg/calcCI.cpp:493: fo ==> of, for
data/rsem-1.3.3+dfsg/calcCI.cpp:495: fo ==> of, for
data/rsem-1.3.3+dfsg/calcCI.cpp:496: fo ==> of, for
data/rsem-1.3.3+dfsg/parseIt.cpp:74: supressed ==> suppressed
data/rsem-1.3.3+dfsg/rsem-calculate-expression:1138: conrol ==> control
data/rsem-1.3.3+dfsg/rsem-gen-transcript-plots:129: covarege ==> coverage
data/rsem-1.3.3+dfsg/rsem-gen-transcript-plots:129: arithmetics ==> arithmetic
data/rsem-1.3.3+dfsg/rsem-prepare-reference:128: alreay ==> already
data/rsem-1.3.3+dfsg/rsem-run-prsem-testing-procedure:192: ARGUMENGS ==> ARGUMENTS
data/rsem-1.3.3+dfsg/rsem-run-prsem-testing-procedure:220: conrol ==> control
data/rsem-1.3.3+dfsg/rsem-run-prsem-testing-procedure:279: referece ==> reference
data/rsem-1.3.3+dfsg/rsem_perl_utils.pm:30: Plase ==> Please
data/rsem-1.3.3+dfsg/samValidator.cpp:95: nWe ==> new
data/rsem-1.3.3+dfsg/simulation.cpp:167: millon ==> million
data/rsem-1.3.3+dfsg/wiggle.cpp:87: fo ==> of, for
data/rsem-1.3.3+dfsg/wiggle.cpp:88: fo ==> of, for
data/rsem-1.3.3+dfsg/wiggle.cpp:94: fo ==> of, for
data/rsem-1.3.3+dfsg/wiggle.cpp:110: fo ==> of, for
data/rsem-1.3.3+dfsg/wiggle.cpp:111: fo ==> of, for
data/rsem-1.3.3+dfsg/wiggle.cpp:118: fo ==> of, for
data/rsem-1.3.3+dfsg/wiggle.cpp:119: fo ==> of, for
data/rsem-1.3.3+dfsg/wiggle.h:33: fo ==> of, for
data/rsem-1.3.3+dfsg/rsem-gff3-to-gtf:302: successully ==> successfully
data/rsem-1.3.3+dfsg/pRSEM/ChIPSeqExperiment.py:138: cann't ==> can't
data/rsem-1.3.3+dfsg/pRSEM/process-rnaseq.R:207: dum ==> dumb
data/rsem-1.3.3+dfsg/pRSEM/process-rnaseq.R:211: dum ==> dumb
data/rsem-1.3.3+dfsg/pRSEM/process-rnaseq.R:710: parition ==> partition
data/rsem-1.3.3+dfsg/pRSEM/Prsem.py:170: contect ==> contact, context, connect
data/rsem-1.3.3+dfsg/pRSEM/Transcript.py:23: postion ==> position
data/rsem-1.3.3+dfsg/pRSEM/Transcript.py:26: postion ==> position
data/rsem-1.3.3+dfsg/pRSEM/Util.py:41: singal ==> signal, single
data/rsem-1.3.3+dfsg/pRSEM/idrCode/README.txt:33: doesnt ==> doesn't, does not
data/rsem-1.3.3+dfsg/pRSEM/idrCode/README.txt:92: atleast ==> at least
data/rsem-1.3.3+dfsg/pRSEM/idrCode/README.txt:101: sav ==> save
data/rsem-1.3.3+dfsg/pRSEM/idrCode/README.txt:102: sav ==> save
data/rsem-1.3.3+dfsg/pRSEM/idrCode/batch-consistency-analysis.r:96: sav ==> save
data/rsem-1.3.3+dfsg/pRSEM/idrCode/batch-consistency-analysis.r:97: sav ==> save
data/rsem-1.3.3+dfsg/pRSEM/idrCode/batch-consistency-analysis.r:108: sav ==> save
data/rsem-1.3.3+dfsg/pRSEM/idrCode/batch-consistency-analysis.r:109: sav ==> save
data/rsem-1.3.3+dfsg/pRSEM/idrCode/batch-consistency-plot-merged2.r:106: sav ==> save
data/rsem-1.3.3+dfsg/pRSEM/idrCode/batch-consistency-plot-merged2.r:107: sav ==> save
data/rsem-1.3.3+dfsg/pRSEM/idrCode/batch-consistency-plot-merged2.r:192: sav ==> save
data/rsem-1.3.3+dfsg/pRSEM/idrCode/batch-consistency-plot.r:32: sav ==> save
data/rsem-1.3.3+dfsg/pRSEM/idrCode/batch-consistency-plot.r:33: sav ==> save
data/rsem-1.3.3+dfsg/pRSEM/idrCode/functions-all-clayton-12-13.r:296: syncronize ==> synchronize
data/rsem-1.3.3+dfsg/pRSEM/idrCode/functions-all-clayton-12-13.r:989: hist ==> heist, his
data/rsem-1.3.3+dfsg/pRSEM/idrCode/functions-all-clayton-12-13.r:1085: histgram ==> histogram
data/rsem-1.3.3+dfsg/pRSEM/idrCode/functions-all-clayton-12-13.r:1149: hist ==> heist, his
data/rsem-1.3.3+dfsg/pRSEM/idrCode/functions-all-clayton-12-13.r:1150: hist ==> heist, his
data/rsem-1.3.3+dfsg/pRSEM/idrCode/functions-all-clayton-12-13.r:1168: hist ==> heist, his
data/rsem-1.3.3+dfsg/pRSEM/idrCode/functions-all-clayton-12-13.r:1169: hist ==> heist, his
data/rsem-1.3.3+dfsg/pRSEM/idrCode/functions-all-clayton-12-13.r:1230: hist ==> heist, his
data/rsem-1.3.3+dfsg/pRSEM/idrCode/functions-all-clayton-12-13.r:1231: hist ==> heist, his
data/rsem-1.3.3+dfsg/pRSEM/idrCode/functions-all-clayton-12-13.r:1261: hist ==> heist, his
data/rsem-1.3.3+dfsg/pRSEM/idrCode/functions-all-clayton-12-13.r:1262: hist ==> heist, his
data/rsem-1.3.3+dfsg/pRSEM/idrCode/functions-all-clayton-12-13.r:1294: hist ==> heist, his
data/rsem-1.3.3+dfsg/pRSEM/idrCode/functions-all-clayton-12-13.r:1295: hist ==> heist, his
data/rsem-1.3.3+dfsg/pRSEM/idrCode/functions-all-clayton-12-13.r:1435: hist ==> heist, his
data/rsem-1.3.3+dfsg/pRSEM/idrCode/functions-all-clayton-12-13.r:1436: hist ==> heist, his
data/rsem-1.3.3+dfsg/pRSEM/idrCode/functions-all-clayton-12-13.r:1702: hist ==> heist, his
data/rsem-1.3.3+dfsg/pRSEM/idrCode/functions-all-clayton-12-13.r:1703: hist ==> heist, his
data/rsem-1.3.3+dfsg/pRSEM/idrCode/functions-all-clayton-12-13.r:1736: hist ==> heist, his
data/rsem-1.3.3+dfsg/pRSEM/idrCode/functions-all-clayton-12-13.r:1737: hist ==> heist, his
data/rsem-1.3.3+dfsg/pRSEM/idrCode/functions-all-clayton-12-13.r:1898: hist ==> heist, his
data/rsem-1.3.3+dfsg/pRSEM/idrCode/functions-all-clayton-12-13.r:1899: hist ==> heist, his
data/rsem-1.3.3+dfsg/pRSEM/idrCode/functions-all-clayton-12-13.r:1900: hist ==> heist, his
data/rsem-1.3.3+dfsg/pRSEM/idrCode/functions-all-clayton-12-13.r:1901: hist ==> heist, his
data/rsem-1.3.3+dfsg/pRSEM/idrCode/functions-all-clayton-12-13.r:1913: hist ==> heist, his
data/rsem-1.3.3+dfsg/pRSEM/idrCode/functions-all-clayton-12-13.r:1925: hist ==> heist, his
data/rsem-1.3.3+dfsg/pRSEM/idrCode/functions-all-clayton-12-13.r:3063: strucutre ==> structure
data/rsem-1.3.3+dfsg/pRSEM/phantompeakqualtools/README.txt:145: severly ==> severely
data/rsem-1.3.3+dfsg/pRSEM/phantompeakqualtools/README.txt:147: mappping ==> mapping
data/rsem-1.3.3+dfsg/pRSEM/phantompeakqualtools/README.txt:147: upto ==> up to
data/rsem-1.3.3+dfsg/pRSEM/phantompeakqualtools/spp_1.10.1_on_R3.2/R/zroutines.R:252: indecies ==> indices
data/rsem-1.3.3+dfsg/pRSEM/phantompeakqualtools/spp_1.10.1_on_R3.2/R/zroutines.R:276: indecies ==> indices
data/rsem-1.3.3+dfsg/pRSEM/phantompeakqualtools/spp_1.10.1_on_R3.2/R/zroutines.R:283: indecies ==> indices
data/rsem-1.3.3+dfsg/pRSEM/phantompeakqualtools/spp_1.10.1_on_R3.2/R/zroutines.R:459: paramters ==> parameters
data/rsem-1.3.3+dfsg/pRSEM/phantompeakqualtools/spp_1.10.1_on_R3.2/R/zroutines.R:685: nd ==> and, 2nd
data/rsem-1.3.3+dfsg/pRSEM/phantompeakqualtools/spp_1.10.1_on_R3.2/R/zroutines.R:686: nd ==> and, 2nd
data/rsem-1.3.3+dfsg/pRSEM/phantompeakqualtools/spp_1.10.1_on_R3.2/R/zroutines.R:686: nd ==> and, 2nd
data/rsem-1.3.3+dfsg/pRSEM/phantompeakqualtools/spp_1.10.1_on_R3.2/R/zroutines.R:686: nd ==> and, 2nd
data/rsem-1.3.3+dfsg/pRSEM/phantompeakqualtools/spp_1.10.1_on_R3.2/R/zroutines.R:686: nd ==> and, 2nd
data/rsem-1.3.3+dfsg/pRSEM/phantompeakqualtools/spp_1.10.1_on_R3.2/R/zroutines.R:921: multipled ==> multiplied
data/rsem-1.3.3+dfsg/pRSEM/phantompeakqualtools/spp_1.10.1_on_R3.2/R/zroutines.R:1627: cooridnates ==> coordinates
data/rsem-1.3.3+dfsg/pRSEM/phantompeakqualtools/spp_1.10.1_on_R3.2/R/zroutines.R:1698: intepreted ==> interpreted
data/rsem-1.3.3+dfsg/pRSEM/phantompeakqualtools/spp_1.10.1_on_R3.2/R/zroutines.R:1734: ans ==> and
data/rsem-1.3.3+dfsg/pRSEM/phantompeakqualtools/spp_1.10.1_on_R3.2/R/zroutines.R:1735: ans ==> and
data/rsem-1.3.3+dfsg/pRSEM/phantompeakqualtools/spp_1.10.1_on_R3.2/R/zroutines.R:1736: ans ==> and
data/rsem-1.3.3+dfsg/pRSEM/phantompeakqualtools/spp_1.10.1_on_R3.2/R/zroutines.R:1778: nd ==> and, 2nd
data/rsem-1.3.3+dfsg/pRSEM/phantompeakqualtools/spp_1.10.1_on_R3.2/R/zroutines.R:1787: nd ==> and, 2nd
data/rsem-1.3.3+dfsg/pRSEM/phantompeakqualtools/spp_1.10.1_on_R3.2/R/zroutines.R:1787: nd ==> and, 2nd
data/rsem-1.3.3+dfsg/pRSEM/phantompeakqualtools/spp_1.10.1_on_R3.2/R/zroutines.R:2086: dout ==> doubt
data/rsem-1.3.3+dfsg/pRSEM/phantompeakqualtools/spp_1.10.1_on_R3.2/R/zroutines.R:2111: dout ==> doubt
data/rsem-1.3.3+dfsg/pRSEM/phantompeakqualtools/spp_1.10.1_on_R3.2/R/zroutines.R:2111: dout ==> doubt
data/rsem-1.3.3+dfsg/pRSEM/phantompeakqualtools/spp_1.10.1_on_R3.2/R/zroutines.R:2113: dout ==> doubt
data/rsem-1.3.3+dfsg/pRSEM/phantompeakqualtools/spp_1.10.1_on_R3.2/R/zroutines.R:2116: dout ==> doubt
data/rsem-1.3.3+dfsg/pRSEM/phantompeakqualtools/spp_1.10.1_on_R3.2/R/zroutines.R:2118: dout ==> doubt
data/rsem-1.3.3+dfsg/pRSEM/phantompeakqualtools/spp_1.10.1_on_R3.2/R/zroutines.R:2123: postive ==> positive
data/rsem-1.3.3+dfsg/pRSEM/phantompeakqualtools/spp_1.10.1_on_R3.2/R/zroutines.R:2141: dout ==> doubt
data/rsem-1.3.3+dfsg/pRSEM/phantompeakqualtools/spp_1.10.1_on_R3.2/R/zroutines.R:2141: dout ==> doubt
data/rsem-1.3.3+dfsg/pRSEM/phantompeakqualtools/spp_1.10.1_on_R3.2/R/zroutines.R:2142: dout ==> doubt
data/rsem-1.3.3+dfsg/pRSEM/phantompeakqualtools/spp_1.10.1_on_R3.2/R/zroutines.R:2143: dout ==> doubt
data/rsem-1.3.3+dfsg/pRSEM/phantompeakqualtools/spp_1.10.1_on_R3.2/R/zroutines.R:2146: dout ==> doubt
data/rsem-1.3.3+dfsg/pRSEM/phantompeakqualtools/spp_1.10.1_on_R3.2/R/zroutines.R:2148: dout ==> doubt
data/rsem-1.3.3+dfsg/pRSEM/phantompeakqualtools/spp_1.10.1_on_R3.2/man/add.broad.peak.regions.Rd:10: postions ==> positions
data/rsem-1.3.3+dfsg/pRSEM/phantompeakqualtools/spp_1.10.1_on_R3.2/man/add.broad.peak.regions.Rd:16: optionall ==> optional, optionally
data/rsem-1.3.3+dfsg/pRSEM/phantompeakqualtools/spp_1.10.1_on_R3.2/man/add.broad.peak.regions.Rd:23: postions ==> positions
data/rsem-1.3.3+dfsg/pRSEM/phantompeakqualtools/spp_1.10.1_on_R3.2/man/get.broad.enrichment.clusters.Rd:20: eachother ==> each other
data/rsem-1.3.3+dfsg/pRSEM/phantompeakqualtools/spp_1.10.1_on_R3.2/man/get.conservative.fold.enrichment.profile.Rd:30: eachother ==> each other
data/rsem-1.3.3+dfsg/pRSEM/phantompeakqualtools/spp_1.10.1_on_R3.2/man/get.conservative.fold.enrichment.profile.Rd:37: caclulation ==> calculation
data/rsem-1.3.3+dfsg/pRSEM/phantompeakqualtools/spp_1.10.1_on_R3.2/man/get.conservative.fold.enrichment.profile.Rd:53: fo ==> of, for
data/rsem-1.3.3+dfsg/pRSEM/phantompeakqualtools/spp_1.10.1_on_R3.2/man/get.mser.Rd:43: multple ==> multiple
data/rsem-1.3.3+dfsg/pRSEM/phantompeakqualtools/spp_1.10.1_on_R3.2/man/get.smoothed.tag.density.Rd:21: multipled ==> multiplied
data/rsem-1.3.3+dfsg/pRSEM/phantompeakqualtools/spp_1.10.1_on_R3.2/man/get.smoothed.tag.density.Rd:24: eachother ==> each other
data/rsem-1.3.3+dfsg/pRSEM/phantompeakqualtools/spp_1.10.1_on_R3.2/man/read.bam.tags.Rd:7: alignemnts ==> alignments
data/rsem-1.3.3+dfsg/pRSEM/phantompeakqualtools/spp_1.10.1_on_R3.2/man/read.eland.tags.Rd:20: considred ==> considered
data/rsem-1.3.3+dfsg/pRSEM/phantompeakqualtools/spp_1.10.1_on_R3.2/man/remove.local.tag.anomalies.Rd:28: definining ==> defining
data/rsem-1.3.3+dfsg/pRSEM/phantompeakqualtools/spp_1.10.1_on_R3.2/man/write.narrowpeak.binding.Rd:19: borad ==> board
data/rsem-1.3.3+dfsg/pRSEM/phantompeakqualtools/spp_1.10.1_on_R3.2/man/writewig.Rd:22: Wheter ==> Whether
data/rsem-1.3.3+dfsg/pRSEM/phantompeakqualtools/spp_1.10.1_on_R3.2/src/BGZF.cpp:36: ba ==> by, be
data/rsem-1.3.3+dfsg/pRSEM/phantompeakqualtools/spp_1.10.1_on_R3.2/src/BamAlignment.h:149: SetIs ==> set is, settees
data/rsem-1.3.3+dfsg/pRSEM/phantompeakqualtools/spp_1.10.1_on_R3.2/src/BamMultiReader.cpp:389: ba ==> by, be
data/rsem-1.3.3+dfsg/pRSEM/phantompeakqualtools/spp_1.10.1_on_R3.2/src/BamMultiReader.cpp:390: ba ==> by, be
data/rsem-1.3.3+dfsg/pRSEM/phantompeakqualtools/spp_1.10.1_on_R3.2/src/BamMultiReader.cpp:392: ba ==> by, be
data/rsem-1.3.3+dfsg/pRSEM/phantompeakqualtools/spp_1.10.1_on_R3.2/src/BamReader_p.h:96: inernal ==> internal
data/rsem-1.3.3+dfsg/pRSEM/phantompeakqualtools/spp_1.10.1_on_R3.2/src/BamStandardIndex_p.cpp:321: succes ==> success
data/rsem-1.3.3+dfsg/pRSEM/phantompeakqualtools/spp_1.10.1_on_R3.2/src/BamToolsIndex_p.cpp:76: intialize ==> initialize
data/rsem-1.3.3+dfsg/pRSEM/phantompeakqualtools/spp_1.10.1_on_R3.2/src/BamToolsIndex_p.cpp:159: accomodate ==> accommodate
data/rsem-1.3.3+dfsg/pRSEM/phantompeakqualtools/spp_1.10.1_on_R3.2/src/bamread.cpp:158: ans ==> and
data/rsem-1.3.3+dfsg/pRSEM/phantompeakqualtools/spp_1.10.1_on_R3.2/src/bamread.cpp:159: ans ==> and
data/rsem-1.3.3+dfsg/pRSEM/phantompeakqualtools/spp_1.10.1_on_R3.2/src/bamread.cpp:207: ans ==> and
data/rsem-1.3.3+dfsg/pRSEM/phantompeakqualtools/spp_1.10.1_on_R3.2/src/bamread.cpp:210: ans ==> and
data/rsem-1.3.3+dfsg/pRSEM/phantompeakqualtools/spp_1.10.1_on_R3.2/src/bamread.cpp:217: ans ==> and
data/rsem-1.3.3+dfsg/pRSEM/phantompeakqualtools/spp_1.10.1_on_R3.2/src/bed2vector.cpp:206: ans ==> and
data/rsem-1.3.3+dfsg/pRSEM/phantompeakqualtools/spp_1.10.1_on_R3.2/src/bed2vector.cpp:207: ans ==> and
data/rsem-1.3.3+dfsg/pRSEM/phantompeakqualtools/spp_1.10.1_on_R3.2/src/bed2vector.cpp:216: ans ==> and
data/rsem-1.3.3+dfsg/pRSEM/phantompeakqualtools/spp_1.10.1_on_R3.2/src/bed2vector.cpp:219: ans ==> and
data/rsem-1.3.3+dfsg/pRSEM/phantompeakqualtools/spp_1.10.1_on_R3.2/src/bed2vector.cpp:226: ans ==> and
data/rsem-1.3.3+dfsg/pRSEM/phantompeakqualtools/spp_1.10.1_on_R3.2/src/bed2vector.cpp:343: ans ==> and
data/rsem-1.3.3+dfsg/pRSEM/phantompeakqualtools/spp_1.10.1_on_R3.2/src/bed2vector.cpp:344: ans ==> and
data/rsem-1.3.3+dfsg/pRSEM/phantompeakqualtools/spp_1.10.1_on_R3.2/src/bed2vector.cpp:381: ans ==> and
data/rsem-1.3.3+dfsg/pRSEM/phantompeakqualtools/spp_1.10.1_on_R3.2/src/bed2vector.cpp:384: ans ==> and
data/rsem-1.3.3+dfsg/pRSEM/phantompeakqualtools/spp_1.10.1_on_R3.2/src/bed2vector.cpp:391: ans ==> and
data/rsem-1.3.3+dfsg/pRSEM/phantompeakqualtools/spp_1.10.1_on_R3.2/src/bed2vector.cpp:529: ans ==> and
data/rsem-1.3.3+dfsg/pRSEM/phantompeakqualtools/spp_1.10.1_on_R3.2/src/bed2vector.cpp:530: ans ==> and
data/rsem-1.3.3+dfsg/pRSEM/phantompeakqualtools/spp_1.10.1_on_R3.2/src/bed2vector.cpp:585: ans ==> and
data/rsem-1.3.3+dfsg/pRSEM/phantompeakqualtools/spp_1.10.1_on_R3.2/src/bed2vector.cpp:588: ans ==> and
data/rsem-1.3.3+dfsg/pRSEM/phantompeakqualtools/spp_1.10.1_on_R3.2/src/bed2vector.cpp:595: ans ==> and
data/rsem-1.3.3+dfsg/pRSEM/phantompeakqualtools/spp_1.10.1_on_R3.2/src/bed2vector.cpp:739: ans ==> and
data/rsem-1.3.3+dfsg/pRSEM/phantompeakqualtools/spp_1.10.1_on_R3.2/src/bed2vector.cpp:740: ans ==> and
data/rsem-1.3.3+dfsg/pRSEM/phantompeakqualtools/spp_1.10.1_on_R3.2/src/bed2vector.cpp:777: ans ==> and
data/rsem-1.3.3+dfsg/pRSEM/phantompeakqualtools/spp_1.10.1_on_R3.2/src/bed2vector.cpp:780: ans ==> and
data/rsem-1.3.3+dfsg/pRSEM/phantompeakqualtools/spp_1.10.1_on_R3.2/src/bed2vector.cpp:787: ans ==> and
data/rsem-1.3.3+dfsg/pRSEM/phantompeakqualtools/spp_1.10.1_on_R3.2/src/bed2vector.cpp:914: ans ==> and
data/rsem-1.3.3+dfsg/pRSEM/phantompeakqualtools/spp_1.10.1_on_R3.2/src/bed2vector.cpp:915: ans ==> and
data/rsem-1.3.3+dfsg/pRSEM/phantompeakqualtools/spp_1.10.1_on_R3.2/src/bed2vector.cpp:963: ans ==> and
data/rsem-1.3.3+dfsg/pRSEM/phantompeakqualtools/spp_1.10.1_on_R3.2/src/bed2vector.cpp:966: ans ==> and
data/rsem-1.3.3+dfsg/pRSEM/phantompeakqualtools/spp_1.10.1_on_R3.2/src/bed2vector.cpp:973: ans ==> and
data/rsem-1.3.3+dfsg/pRSEM/phantompeakqualtools/spp_1.10.1_on_R3.2/src/bed2vector.cpp:1124: ans ==> and
data/rsem-1.3.3+dfsg/pRSEM/phantompeakqualtools/spp_1.10.1_on_R3.2/src/bed2vector.cpp:1125: ans ==> and
data/rsem-1.3.3+dfsg/pRSEM/phantompeakqualtools/spp_1.10.1_on_R3.2/src/bed2vector.cpp:1173: ans ==> and
data/rsem-1.3.3+dfsg/pRSEM/phantompeakqualtools/spp_1.10.1_on_R3.2/src/bed2vector.cpp:1176: ans ==> and
data/rsem-1.3.3+dfsg/pRSEM/phantompeakqualtools/spp_1.10.1_on_R3.2/src/bed2vector.cpp:1183: ans ==> and
data/rsem-1.3.3+dfsg/pRSEM/phantompeakqualtools/spp_1.10.1_on_R3.2/src/bed2vector.cpp:1412: ans ==> and
data/rsem-1.3.3+dfsg/pRSEM/phantompeakqualtools/spp_1.10.1_on_R3.2/src/bed2vector.cpp:1413: ans ==> and
data/rsem-1.3.3+dfsg/pRSEM/phantompeakqualtools/spp_1.10.1_on_R3.2/src/bed2vector.cpp:1461: ans ==> and
data/rsem-1.3.3+dfsg/pRSEM/phantompeakqualtools/spp_1.10.1_on_R3.2/src/bed2vector.cpp:1464: ans ==> and
data/rsem-1.3.3+dfsg/pRSEM/phantompeakqualtools/spp_1.10.1_on_R3.2/src/bed2vector.cpp:1471: ans ==> and
data/rsem-1.3.3+dfsg/pRSEM/phantompeakqualtools/spp_1.10.1_on_R3.2/src/bed2vector.cpp:1625: ans ==> and
data/rsem-1.3.3+dfsg/pRSEM/phantompeakqualtools/spp_1.10.1_on_R3.2/src/bed2vector.cpp:1626: ans ==> and
data/rsem-1.3.3+dfsg/pRSEM/phantompeakqualtools/spp_1.10.1_on_R3.2/src/bed2vector.cpp:1674: ans ==> and
data/rsem-1.3.3+dfsg/pRSEM/phantompeakqualtools/spp_1.10.1_on_R3.2/src/bed2vector.cpp:1677: ans ==> and
data/rsem-1.3.3+dfsg/pRSEM/phantompeakqualtools/spp_1.10.1_on_R3.2/src/bed2vector.cpp:1684: ans ==> and
data/rsem-1.3.3+dfsg/pRSEM/phantompeakqualtools/spp_1.10.1_on_R3.2/src/bed2vector.cpp:1844: ans ==> and
data/rsem-1.3.3+dfsg/pRSEM/phantompeakqualtools/spp_1.10.1_on_R3.2/src/bed2vector.cpp:1845: ans ==> and
data/rsem-1.3.3+dfsg/pRSEM/phantompeakqualtools/spp_1.10.1_on_R3.2/src/bed2vector.cpp:1901: ans ==> and
data/rsem-1.3.3+dfsg/pRSEM/phantompeakqualtools/spp_1.10.1_on_R3.2/src/bed2vector.cpp:1904: ans ==> and
data/rsem-1.3.3+dfsg/pRSEM/phantompeakqualtools/spp_1.10.1_on_R3.2/src/bed2vector.cpp:1911: ans ==> and
data/rsem-1.3.3+dfsg/pRSEM/phantompeakqualtools/spp_1.10.1_on_R3.2/src/bed2vector.cpp:2030: ans ==> and
data/rsem-1.3.3+dfsg/pRSEM/phantompeakqualtools/spp_1.10.1_on_R3.2/src/bed2vector.cpp:2031: ans ==> and
data/rsem-1.3.3+dfsg/pRSEM/phantompeakqualtools/spp_1.10.1_on_R3.2/src/bed2vector.cpp:2079: ans ==> and
data/rsem-1.3.3+dfsg/pRSEM/phantompeakqualtools/spp_1.10.1_on_R3.2/src/bed2vector.cpp:2082: ans ==> and
data/rsem-1.3.3+dfsg/pRSEM/phantompeakqualtools/spp_1.10.1_on_R3.2/src/bed2vector.cpp:2089: ans ==> and
data/rsem-1.3.3+dfsg/pRSEM/phantompeakqualtools/spp_1.10.1_on_R3.2/src/bed2vector.cpp:2201: ans ==> and
data/rsem-1.3.3+dfsg/pRSEM/phantompeakqualtools/spp_1.10.1_on_R3.2/src/bed2vector.cpp:2202: ans ==> and
data/rsem-1.3.3+dfsg/pRSEM/phantompeakqualtools/spp_1.10.1_on_R3.2/src/bed2vector.cpp:2231: ans ==> and
data/rsem-1.3.3+dfsg/pRSEM/phantompeakqualtools/spp_1.10.1_on_R3.2/src/bed2vector.cpp:2234: ans ==> and
data/rsem-1.3.3+dfsg/pRSEM/phantompeakqualtools/spp_1.10.1_on_R3.2/src/bed2vector.cpp:2241: ans ==> and
data/rsem-1.3.3+dfsg/pRSEM/phantompeakqualtools/spp_1.10.1_on_R3.2/src/bed2vector.cpp:2373: ans ==> and
data/rsem-1.3.3+dfsg/pRSEM/phantompeakqualtools/spp_1.10.1_on_R3.2/src/bed2vector.cpp:2374: ans ==> and
data/rsem-1.3.3+dfsg/pRSEM/phantompeakqualtools/spp_1.10.1_on_R3.2/src/bed2vector.cpp:2403: ans ==> and
data/rsem-1.3.3+dfsg/pRSEM/phantompeakqualtools/spp_1.10.1_on_R3.2/src/bed2vector.cpp:2406: ans ==> and
data/rsem-1.3.3+dfsg/pRSEM/phantompeakqualtools/spp_1.10.1_on_R3.2/src/bed2vector.cpp:2413: ans ==> and
data/rsem-1.3.3+dfsg/pRSEM/phantompeakqualtools/spp_1.10.1_on_R3.2/src/bed2vector.cpp:2576: ans ==> and
data/rsem-1.3.3+dfsg/pRSEM/phantompeakqualtools/spp_1.10.1_on_R3.2/src/bed2vector.cpp:2577: ans ==> and
data/rsem-1.3.3+dfsg/pRSEM/phantompeakqualtools/spp_1.10.1_on_R3.2/src/bed2vector.cpp:2614: ans ==> and
data/rsem-1.3.3+dfsg/pRSEM/phantompeakqualtools/spp_1.10.1_on_R3.2/src/bed2vector.cpp:2617: ans ==> and
data/rsem-1.3.3+dfsg/pRSEM/phantompeakqualtools/spp_1.10.1_on_R3.2/src/bed2vector.cpp:2624: ans ==> and
data/rsem-1.3.3+dfsg/pRSEM/phantompeakqualtools/spp_1.10.1_on_R3.2/src/cdensum.c:9: dout ==> doubt
data/rsem-1.3.3+dfsg/pRSEM/phantompeakqualtools/spp_1.10.1_on_R3.2/src/cdensum.c:12: dout ==> doubt
data/rsem-1.3.3+dfsg/pRSEM/phantompeakqualtools/spp_1.10.1_on_R3.2/src/cdensum.c:30: dout ==> doubt
data/rsem-1.3.3+dfsg/pRSEM/phantompeakqualtools/spp_1.10.1_on_R3.2/src/cdensum.c:37: dout ==> doubt
data/rsem-1.3.3+dfsg/pRSEM/phantompeakqualtools/spp_1.10.1_on_R3.2/src/cdensum.c:41: dout ==> doubt
data/rsem-1.3.3+dfsg/pRSEM/phantompeakqualtools/spp_1.10.1_on_R3.2/src/cdensum.c:44: indecies ==> indices
data/rsem-1.3.3+dfsg/pRSEM/phantompeakqualtools/spp_1.10.1_on_R3.2/src/cdensum.c:58: dout ==> doubt
data/rsem-1.3.3+dfsg/pRSEM/phantompeakqualtools/spp_1.10.1_on_R3.2/src/cdensum.c:80: dout ==> doubt
data/rsem-1.3.3+dfsg/pRSEM/phantompeakqualtools/spp_1.10.1_on_R3.2/src/cdensum.c:83: indecies ==> indices
data/rsem-1.3.3+dfsg/pRSEM/phantompeakqualtools/spp_1.10.1_on_R3.2/src/cdensum.c:97: dout ==> doubt
data/rsem-1.3.3+dfsg/pRSEM/phantompeakqualtools/spp_1.10.1_on_R3.2/src/cdensum.c:121: dout ==> doubt
data/rsem-1.3.3+dfsg/pRSEM/phantompeakqualtools/spp_1.10.1_on_R3.2/src/cdensum.c:124: indecies ==> indices
data/rsem-1.3.3+dfsg/pRSEM/phantompeakqualtools/spp_1.10.1_on_R3.2/src/cdensum.c:138: dout ==> doubt
data/rsem-1.3.3+dfsg/pRSEM/phantompeakqualtools/spp_1.10.1_on_R3.2/src/maqread.cpp:144: ans ==> and
data/rsem-1.3.3+dfsg/pRSEM/phantompeakqualtools/spp_1.10.1_on_R3.2/src/maqread.cpp:145: ans ==> and
data/rsem-1.3.3+dfsg/pRSEM/phantompeakqualtools/spp_1.10.1_on_R3.2/src/maqread.cpp:193: ans ==> and
data/rsem-1.3.3+dfsg/pRSEM/phantompeakqualtools/spp_1.10.1_on_R3.2/src/maqread.cpp:196: ans ==> and
data/rsem-1.3.3+dfsg/pRSEM/phantompeakqualtools/spp_1.10.1_on_R3.2/src/maqread.cpp:203: ans ==> and
data/rsem-1.3.3+dfsg/pRSEM/phantompeakqualtools/spp_1.10.1_on_R3.2/src/peaks.cpp:90: indecies ==> indices
data/rsem-1.3.3+dfsg/pRSEM/phantompeakqualtools/spp_1.10.1_on_R3.2/src/peaks.cpp:97: nd ==> and, 2nd
data/rsem-1.3.3+dfsg/pRSEM/phantompeakqualtools/spp_1.10.1_on_R3.2/src/peaks.cpp:100: nd ==> and, 2nd
data/rsem-1.3.3+dfsg/pRSEM/phantompeakqualtools/spp_1.10.1_on_R3.2/src/peaks.cpp:103: nd ==> and, 2nd
data/rsem-1.3.3+dfsg/pRSEM/phantompeakqualtools/spp_1.10.1_on_R3.2/src/peaks.cpp:109: nd ==> and, 2nd
data/rsem-1.3.3+dfsg/pRSEM/phantompeakqualtools/spp_1.10.1_on_R3.2/src/peaks.cpp:118: nd ==> and, 2nd
data/rsem-1.3.3+dfsg/pRSEM/phantompeakqualtools/spp_1.10.1_on_R3.2/src/peaks.cpp:123: nd ==> and, 2nd
data/rsem-1.3.3+dfsg/pRSEM/phantompeakqualtools/spp_1.10.1_on_R3.2/src/peaks.cpp:186: indecies ==> indices
data/rsem-1.3.3+dfsg/pRSEM/phantompeakqualtools/spp_1.10.1_on_R3.2/src/peaks.cpp:510: indecies ==> indices
data/rsem-1.3.3+dfsg/pRSEM/phantompeakqualtools/spp_1.10.1_on_R3.2/src/peaks.cpp:537: boudnary ==> boundary
data/rsem-1.3.3+dfsg/pRSEM/phantompeakqualtools/spp_1.10.1_on_R3.2/src/wdl.cpp:26: hist ==> heist, his
data/rsem-1.3.3+dfsg/pRSEM/phantompeakqualtools/spp_1.10.1_on_R3.2/src/wdl.cpp:27: hist ==> heist, his
data/rsem-1.3.3+dfsg/pRSEM/phantompeakqualtools/spp_1.10.1_on_R3.2/src/wdl.cpp:35: hist ==> heist, his
data/rsem-1.3.3+dfsg/pRSEM/phantompeakqualtools/spp_1.10.1_on_R3.2/src/wdl.cpp:36: hist ==> heist, his
data/rsem-1.3.3+dfsg/pRSEM/phantompeakqualtools/spp_1.10.1_on_R3.2/src/wdl.cpp:180: varn ==> warn
data/rsem-1.3.3+dfsg/pRSEM/phantompeakqualtools/spp_1.10.1_on_R3.2/src/wdl.cpp:196: varn ==> warn
data/rsem-1.3.3+dfsg/pRSEM/phantompeakqualtools/spp_1.10.1_on_R3.2/src/wdl.cpp:204: varn ==> warn
data/rsem-1.3.3+dfsg/pRSEM/phantompeakqualtools/spp_1.10.1_on_R3.2/src/wdl.cpp:245: varn ==> warn
data/rsem-1.3.3+dfsg/pRSEM/phantompeakqualtools/spp_1.10.1_on_R3.2/src/wdl.cpp:254: varn ==> warn
data/rsem-1.3.3+dfsg/pRSEM/phantompeakqualtools/spp_1.10.1_on_R3.2/src/wdl.cpp:254: varn ==> warn
data/rsem-1.3.3+dfsg/pRSEM/phantompeakqualtools/spp_1.10.1_on_R3.2/src/wdl.cpp:254: varn ==> warn
data/rsem-1.3.3+dfsg/pRSEM/phantompeakqualtools/spp_1.10.1_on_R3.2/src/wdl.cpp:342: hist ==> heist, his
data/rsem-1.3.3+dfsg/pRSEM/phantompeakqualtools/spp_1.10.1_on_R3.2/src/wdl.cpp:343: hist ==> heist, his
data/rsem-1.3.3+dfsg/pRSEM/phantompeakqualtools/spp_1.10.1_on_R3.2/src/wdl.cpp:352: hist ==> heist, his
data/rsem-1.3.3+dfsg/pRSEM/phantompeakqualtools/spp_1.10.1_on_R3.2/src/wdl.cpp:353: hist ==> heist, his
data/rsem-1.3.3+dfsg/pRSEM/phantompeakqualtools/spp_1.10.1_on_R3.3/R/zroutines.R:252: indecies ==> indices
data/rsem-1.3.3+dfsg/pRSEM/phantompeakqualtools/spp_1.10.1_on_R3.3/R/zroutines.R:276: indecies ==> indices
data/rsem-1.3.3+dfsg/pRSEM/phantompeakqualtools/spp_1.10.1_on_R3.3/R/zroutines.R:283: indecies ==> indices
data/rsem-1.3.3+dfsg/pRSEM/phantompeakqualtools/spp_1.10.1_on_R3.3/R/zroutines.R:459: paramters ==> parameters
data/rsem-1.3.3+dfsg/pRSEM/phantompeakqualtools/spp_1.10.1_on_R3.3/R/zroutines.R:685: nd ==> and, 2nd
data/rsem-1.3.3+dfsg/pRSEM/phantompeakqualtools/spp_1.10.1_on_R3.3/R/zroutines.R:686: nd ==> and, 2nd
data/rsem-1.3.3+dfsg/pRSEM/phantompeakqualtools/spp_1.10.1_on_R3.3/R/zroutines.R:686: nd ==> and, 2nd
data/rsem-1.3.3+dfsg/pRSEM/phantompeakqualtools/spp_1.10.1_on_R3.3/R/zroutines.R:686: nd ==> and, 2nd
data/rsem-1.3.3+dfsg/pRSEM/phantompeakqualtools/spp_1.10.1_on_R3.3/R/zroutines.R:686: nd ==> and, 2nd
data/rsem-1.3.3+dfsg/pRSEM/phantompeakqualtools/spp_1.10.1_on_R3.3/R/zroutines.R:921: multipled ==> multiplied
data/rsem-1.3.3+dfsg/pRSEM/phantompeakqualtools/spp_1.10.1_on_R3.3/R/zroutines.R:1627: cooridnates ==> coordinates
data/rsem-1.3.3+dfsg/pRSEM/phantompeakqualtools/spp_1.10.1_on_R3.3/R/zroutines.R:1698: intepreted ==> interpreted
data/rsem-1.3.3+dfsg/pRSEM/phantompeakqualtools/spp_1.10.1_on_R3.3/R/zroutines.R:1734: ans ==> and
data/rsem-1.3.3+dfsg/pRSEM/phantompeakqualtools/spp_1.10.1_on_R3.3/R/zroutines.R:1735: ans ==> and
data/rsem-1.3.3+dfsg/pRSEM/phantompeakqualtools/spp_1.10.1_on_R3.3/R/zroutines.R:1736: ans ==> and
data/rsem-1.3.3+dfsg/pRSEM/phantompeakqualtools/spp_1.10.1_on_R3.3/R/zroutines.R:1778: nd ==> and, 2nd
data/rsem-1.3.3+dfsg/pRSEM/phantompeakqualtools/spp_1.10.1_on_R3.3/R/zroutines.R:1787: nd ==> and, 2nd
data/rsem-1.3.3+dfsg/pRSEM/phantompeakqualtools/spp_1.10.1_on_R3.3/R/zroutines.R:1787: nd ==> and, 2nd
data/rsem-1.3.3+dfsg/pRSEM/phantompeakqualtools/spp_1.10.1_on_R3.3/R/zroutines.R:2086: dout ==> doubt
data/rsem-1.3.3+dfsg/pRSEM/phantompeakqualtools/spp_1.10.1_on_R3.3/R/zroutines.R:2111: dout ==> doubt
data/rsem-1.3.3+dfsg/pRSEM/phantompeakqualtools/spp_1.10.1_on_R3.3/R/zroutines.R:2111: dout ==> doubt
data/rsem-1.3.3+dfsg/pRSEM/phantompeakqualtools/spp_1.10.1_on_R3.3/R/zroutines.R:2113: dout ==> doubt
data/rsem-1.3.3+dfsg/pRSEM/phantompeakqualtools/spp_1.10.1_on_R3.3/R/zroutines.R:2116: dout ==> doubt
data/rsem-1.3.3+dfsg/pRSEM/phantompeakqualtools/spp_1.10.1_on_R3.3/R/zroutines.R:2118: dout ==> doubt
data/rsem-1.3.3+dfsg/pRSEM/phantompeakqualtools/spp_1.10.1_on_R3.3/R/zroutines.R:2123: postive ==> positive
data/rsem-1.3.3+dfsg/pRSEM/phantompeakqualtools/spp_1.10.1_on_R3.3/R/zroutines.R:2141: dout ==> doubt
data/rsem-1.3.3+dfsg/pRSEM/phantompeakqualtools/spp_1.10.1_on_R3.3/R/zroutines.R:2141: dout ==> doubt
data/rsem-1.3.3+dfsg/pRSEM/phantompeakqualtools/spp_1.10.1_on_R3.3/R/zroutines.R:2142: dout ==> doubt
data/rsem-1.3.3+dfsg/pRSEM/phantompeakqualtools/spp_1.10.1_on_R3.3/R/zroutines.R:2143: dout ==> doubt
data/rsem-1.3.3+dfsg/pRSEM/phantompeakqualtools/spp_1.10.1_on_R3.3/R/zroutines.R:2146: dout ==> doubt
data/rsem-1.3.3+dfsg/pRSEM/phantompeakqualtools/spp_1.10.1_on_R3.3/R/zroutines.R:2148: dout ==> doubt
data/rsem-1.3.3+dfsg/pRSEM/phantompeakqualtools/spp_1.10.1_on_R3.3/man/add.broad.peak.regions.Rd:10: postions ==> positions
data/rsem-1.3.3+dfsg/pRSEM/phantompeakqualtools/spp_1.10.1_on_R3.3/man/add.broad.peak.regions.Rd:16: optionall ==> optional, optionally
data/rsem-1.3.3+dfsg/pRSEM/phantompeakqualtools/spp_1.10.1_on_R3.3/man/add.broad.peak.regions.Rd:23: postions ==> positions
data/rsem-1.3.3+dfsg/pRSEM/phantompeakqualtools/spp_1.10.1_on_R3.3/man/get.broad.enrichment.clusters.Rd:20: eachother ==> each other
data/rsem-1.3.3+dfsg/pRSEM/phantompeakqualtools/spp_1.10.1_on_R3.3/man/get.conservative.fold.enrichment.profile.Rd:30: eachother ==> each other
data/rsem-1.3.3+dfsg/pRSEM/phantompeakqualtools/spp_1.10.1_on_R3.3/man/get.conservative.fold.enrichment.profile.Rd:37: caclulation ==> calculation
data/rsem-1.3.3+dfsg/pRSEM/phantompeakqualtools/spp_1.10.1_on_R3.3/man/get.conservative.fold.enrichment.profile.Rd:53: fo ==> of, for
data/rsem-1.3.3+dfsg/pRSEM/phantompeakqualtools/spp_1.10.1_on_R3.3/man/get.mser.Rd:43: multple ==> multiple
data/rsem-1.3.3+dfsg/pRSEM/phantompeakqualtools/spp_1.10.1_on_R3.3/man/get.smoothed.tag.density.Rd:21: multipled ==> multiplied
data/rsem-1.3.3+dfsg/pRSEM/phantompeakqualtools/spp_1.10.1_on_R3.3/man/get.smoothed.tag.density.Rd:24: eachother ==> each other
data/rsem-1.3.3+dfsg/pRSEM/phantompeakqualtools/spp_1.10.1_on_R3.3/man/read.bam.tags.Rd:7: alignemnts ==> alignments
data/rsem-1.3.3+dfsg/pRSEM/phantompeakqualtools/spp_1.10.1_on_R3.3/man/read.eland.tags.Rd:20: considred ==> considered
data/rsem-1.3.3+dfsg/pRSEM/phantompeakqualtools/spp_1.10.1_on_R3.3/man/remove.local.tag.anomalies.Rd:28: definining ==> defining
data/rsem-1.3.3+dfsg/pRSEM/phantompeakqualtools/spp_1.10.1_on_R3.3/man/write.narrowpeak.binding.Rd:19: borad ==> board
data/rsem-1.3.3+dfsg/pRSEM/phantompeakqualtools/spp_1.10.1_on_R3.3/man/writewig.Rd:22: Wheter ==> Whether
data/rsem-1.3.3+dfsg/pRSEM/phantompeakqualtools/spp_1.10.1_on_R3.3/src/BGZF.cpp:36: ba ==> by, be
data/rsem-1.3.3+dfsg/pRSEM/phantompeakqualtools/spp_1.10.1_on_R3.3/src/BamAlignment.h:149: SetIs ==> set is, settees
data/rsem-1.3.3+dfsg/pRSEM/phantompeakqualtools/spp_1.10.1_on_R3.3/src/BamMultiReader.cpp:389: ba ==> by, be
data/rsem-1.3.3+dfsg/pRSEM/phantompeakqualtools/spp_1.10.1_on_R3.3/src/BamMultiReader.cpp:390: ba ==> by, be
data/rsem-1.3.3+dfsg/pRSEM/phantompeakqualtools/spp_1.10.1_on_R3.3/src/BamMultiReader.cpp:392: ba ==> by, be
data/rsem-1.3.3+dfsg/pRSEM/phantompeakqualtools/spp_1.10.1_on_R3.3/src/BamReader_p.h:96: inernal ==> internal
data/rsem-1.3.3+dfsg/pRSEM/phantompeakqualtools/spp_1.10.1_on_R3.3/src/BamStandardIndex_p.cpp:321: succes ==> success
data/rsem-1.3.3+dfsg/pRSEM/phantompeakqualtools/spp_1.10.1_on_R3.3/src/BamToolsIndex_p.cpp:76: intialize ==> initialize
data/rsem-1.3.3+dfsg/pRSEM/phantompeakqualtools/spp_1.10.1_on_R3.3/src/BamToolsIndex_p.cpp:159: accomodate ==> accommodate
data/rsem-1.3.3+dfsg/pRSEM/phantompeakqualtools/spp_1.10.1_on_R3.3/src/bamread.cpp:160: ans ==> and
data/rsem-1.3.3+dfsg/pRSEM/phantompeakqualtools/spp_1.10.1_on_R3.3/src/bamread.cpp:161: ans ==> and
data/rsem-1.3.3+dfsg/pRSEM/phantompeakqualtools/spp_1.10.1_on_R3.3/src/bamread.cpp:209: ans ==> and
data/rsem-1.3.3+dfsg/pRSEM/phantompeakqualtools/spp_1.10.1_on_R3.3/src/bamread.cpp:212: ans ==> and
data/rsem-1.3.3+dfsg/pRSEM/phantompeakqualtools/spp_1.10.1_on_R3.3/src/bamread.cpp:219: ans ==> and
data/rsem-1.3.3+dfsg/pRSEM/phantompeakqualtools/spp_1.10.1_on_R3.3/src/bed2vector.cpp:208: ans ==> and
data/rsem-1.3.3+dfsg/pRSEM/phantompeakqualtools/spp_1.10.1_on_R3.3/src/bed2vector.cpp:209: ans ==> and
data/rsem-1.3.3+dfsg/pRSEM/phantompeakqualtools/spp_1.10.1_on_R3.3/src/bed2vector.cpp:218: ans ==> and
data/rsem-1.3.3+dfsg/pRSEM/phantompeakqualtools/spp_1.10.1_on_R3.3/src/bed2vector.cpp:221: ans ==> and
data/rsem-1.3.3+dfsg/pRSEM/phantompeakqualtools/spp_1.10.1_on_R3.3/src/bed2vector.cpp:228: ans ==> and
data/rsem-1.3.3+dfsg/pRSEM/phantompeakqualtools/spp_1.10.1_on_R3.3/src/bed2vector.cpp:345: ans ==> and
data/rsem-1.3.3+dfsg/pRSEM/phantompeakqualtools/spp_1.10.1_on_R3.3/src/bed2vector.cpp:346: ans ==> and
data/rsem-1.3.3+dfsg/pRSEM/phantompeakqualtools/spp_1.10.1_on_R3.3/src/bed2vector.cpp:383: ans ==> and
data/rsem-1.3.3+dfsg/pRSEM/phantompeakqualtools/spp_1.10.1_on_R3.3/src/bed2vector.cpp:386: ans ==> and
data/rsem-1.3.3+dfsg/pRSEM/phantompeakqualtools/spp_1.10.1_on_R3.3/src/bed2vector.cpp:393: ans ==> and
data/rsem-1.3.3+dfsg/pRSEM/phantompeakqualtools/spp_1.10.1_on_R3.3/src/bed2vector.cpp:531: ans ==> and
data/rsem-1.3.3+dfsg/pRSEM/phantompeakqualtools/spp_1.10.1_on_R3.3/src/bed2vector.cpp:532: ans ==> and
data/rsem-1.3.3+dfsg/pRSEM/phantompeakqualtools/spp_1.10.1_on_R3.3/src/bed2vector.cpp:587: ans ==> and
data/rsem-1.3.3+dfsg/pRSEM/phantompeakqualtools/spp_1.10.1_on_R3.3/src/bed2vector.cpp:590: ans ==> and
data/rsem-1.3.3+dfsg/pRSEM/phantompeakqualtools/spp_1.10.1_on_R3.3/src/bed2vector.cpp:597: ans ==> and
data/rsem-1.3.3+dfsg/pRSEM/phantompeakqualtools/spp_1.10.1_on_R3.3/src/bed2vector.cpp:741: ans ==> and
data/rsem-1.3.3+dfsg/pRSEM/phantompeakqualtools/spp_1.10.1_on_R3.3/src/bed2vector.cpp:742: ans ==> and
data/rsem-1.3.3+dfsg/pRSEM/phantompeakqualtools/spp_1.10.1_on_R3.3/src/bed2vector.cpp:779: ans ==> and
data/rsem-1.3.3+dfsg/pRSEM/phantompeakqualtools/spp_1.10.1_on_R3.3/src/bed2vector.cpp:782: ans ==> and
data/rsem-1.3.3+dfsg/pRSEM/phantompeakqualtools/spp_1.10.1_on_R3.3/src/bed2vector.cpp:789: ans ==> and
data/rsem-1.3.3+dfsg/pRSEM/phantompeakqualtools/spp_1.10.1_on_R3.3/src/bed2vector.cpp:916: ans ==> and
data/rsem-1.3.3+dfsg/pRSEM/phantompeakqualtools/spp_1.10.1_on_R3.3/src/bed2vector.cpp:917: ans ==> and
data/rsem-1.3.3+dfsg/pRSEM/phantompeakqualtools/spp_1.10.1_on_R3.3/src/bed2vector.cpp:965: ans ==> and
data/rsem-1.3.3+dfsg/pRSEM/phantompeakqualtools/spp_1.10.1_on_R3.3/src/bed2vector.cpp:968: ans ==> and
data/rsem-1.3.3+dfsg/pRSEM/phantompeakqualtools/spp_1.10.1_on_R3.3/src/bed2vector.cpp:975: ans ==> and
data/rsem-1.3.3+dfsg/pRSEM/phantompeakqualtools/spp_1.10.1_on_R3.3/src/bed2vector.cpp:1126: ans ==> and
data/rsem-1.3.3+dfsg/pRSEM/phantompeakqualtools/spp_1.10.1_on_R3.3/src/bed2vector.cpp:1127: ans ==> and
data/rsem-1.3.3+dfsg/pRSEM/phantompeakqualtools/spp_1.10.1_on_R3.3/src/bed2vector.cpp:1175: ans ==> and
data/rsem-1.3.3+dfsg/pRSEM/phantompeakqualtools/spp_1.10.1_on_R3.3/src/bed2vector.cpp:1178: ans ==> and
data/rsem-1.3.3+dfsg/pRSEM/phantompeakqualtools/spp_1.10.1_on_R3.3/src/bed2vector.cpp:1185: ans ==> and
data/rsem-1.3.3+dfsg/pRSEM/phantompeakqualtools/spp_1.10.1_on_R3.3/src/bed2vector.cpp:1414: ans ==> and
data/rsem-1.3.3+dfsg/pRSEM/phantompeakqualtools/spp_1.10.1_on_R3.3/src/bed2vector.cpp:1415: ans ==> and
data/rsem-1.3.3+dfsg/pRSEM/phantompeakqualtools/spp_1.10.1_on_R3.3/src/bed2vector.cpp:1463: ans ==> and
data/rsem-1.3.3+dfsg/pRSEM/phantompeakqualtools/spp_1.10.1_on_R3.3/src/bed2vector.cpp:1466: ans ==> and
data/rsem-1.3.3+dfsg/pRSEM/phantompeakqualtools/spp_1.10.1_on_R3.3/src/bed2vector.cpp:1473: ans ==> and
data/rsem-1.3.3+dfsg/pRSEM/phantompeakqualtools/spp_1.10.1_on_R3.3/src/bed2vector.cpp:1627: ans ==> and
data/rsem-1.3.3+dfsg/pRSEM/phantompeakqualtools/spp_1.10.1_on_R3.3/src/bed2vector.cpp:1628: ans ==> and
data/rsem-1.3.3+dfsg/pRSEM/phantompeakqualtools/spp_1.10.1_on_R3.3/src/bed2vector.cpp:1676: ans ==> and
data/rsem-1.3.3+dfsg/pRSEM/phantompeakqualtools/spp_1.10.1_on_R3.3/src/bed2vector.cpp:1679: ans ==> and
data/rsem-1.3.3+dfsg/pRSEM/phantompeakqualtools/spp_1.10.1_on_R3.3/src/bed2vector.cpp:1686: ans ==> and
data/rsem-1.3.3+dfsg/pRSEM/phantompeakqualtools/spp_1.10.1_on_R3.3/src/bed2vector.cpp:1846: ans ==> and
data/rsem-1.3.3+dfsg/pRSEM/phantompeakqualtools/spp_1.10.1_on_R3.3/src/bed2vector.cpp:1847: ans ==> and
data/rsem-1.3.3+dfsg/pRSEM/phantompeakqualtools/spp_1.10.1_on_R3.3/src/bed2vector.cpp:1903: ans ==> and
data/rsem-1.3.3+dfsg/pRSEM/phantompeakqualtools/spp_1.10.1_on_R3.3/src/bed2vector.cpp:1906: ans ==> and
data/rsem-1.3.3+dfsg/pRSEM/phantompeakqualtools/spp_1.10.1_on_R3.3/src/bed2vector.cpp:1913: ans ==> and
data/rsem-1.3.3+dfsg/pRSEM/phantompeakqualtools/spp_1.10.1_on_R3.3/src/bed2vector.cpp:2032: ans ==> and
data/rsem-1.3.3+dfsg/pRSEM/phantompeakqualtools/spp_1.10.1_on_R3.3/src/bed2vector.cpp:2033: ans ==> and
data/rsem-1.3.3+dfsg/pRSEM/phantompeakqualtools/spp_1.10.1_on_R3.3/src/bed2vector.cpp:2081: ans ==> and
data/rsem-1.3.3+dfsg/pRSEM/phantompeakqualtools/spp_1.10.1_on_R3.3/src/bed2vector.cpp:2084: ans ==> and
data/rsem-1.3.3+dfsg/pRSEM/phantompeakqualtools/spp_1.10.1_on_R3.3/src/bed2vector.cpp:2091: ans ==> and
data/rsem-1.3.3+dfsg/pRSEM/phantompeakqualtools/spp_1.10.1_on_R3.3/src/bed2vector.cpp:2203: ans ==> and
data/rsem-1.3.3+dfsg/pRSEM/phantompeakqualtools/spp_1.10.1_on_R3.3/src/bed2vector.cpp:2204: ans ==> and
data/rsem-1.3.3+dfsg/pRSEM/phantompeakqualtools/spp_1.10.1_on_R3.3/src/bed2vector.cpp:2233: ans ==> and
data/rsem-1.3.3+dfsg/pRSEM/phantompeakqualtools/spp_1.10.1_on_R3.3/src/bed2vector.cpp:2236: ans ==> and
data/rsem-1.3.3+dfsg/pRSEM/phantompeakqualtools/spp_1.10.1_on_R3.3/src/bed2vector.cpp:2243: ans ==> and
data/rsem-1.3.3+dfsg/pRSEM/phantompeakqualtools/spp_1.10.1_on_R3.3/src/bed2vector.cpp:2375: ans ==> and
data/rsem-1.3.3+dfsg/pRSEM/phantompeakqualtools/spp_1.10.1_on_R3.3/src/bed2vector.cpp:2376: ans ==> and
data/rsem-1.3.3+dfsg/pRSEM/phantompeakqualtools/spp_1.10.1_on_R3.3/src/bed2vector.cpp:2405: ans ==> and
data/rsem-1.3.3+dfsg/pRSEM/phantompeakqualtools/spp_1.10.1_on_R3.3/src/bed2vector.cpp:2408: ans ==> and
data/rsem-1.3.3+dfsg/pRSEM/phantompeakqualtools/spp_1.10.1_on_R3.3/src/bed2vector.cpp:2415: ans ==> and
data/rsem-1.3.3+dfsg/pRSEM/phantompeakqualtools/spp_1.10.1_on_R3.3/src/bed2vector.cpp:2578: ans ==> and
data/rsem-1.3.3+dfsg/pRSEM/phantompeakqualtools/spp_1.10.1_on_R3.3/src/bed2vector.cpp:2579: ans ==> and
data/rsem-1.3.3+dfsg/pRSEM/phantompeakqualtools/spp_1.10.1_on_R3.3/src/bed2vector.cpp:2616: ans ==> and
data/rsem-1.3.3+dfsg/pRSEM/phantompeakqualtools/spp_1.10.1_on_R3.3/src/bed2vector.cpp:2619: ans ==> and
data/rsem-1.3.3+dfsg/pRSEM/phantompeakqualtools/spp_1.10.1_on_R3.3/src/bed2vector.cpp:2626: ans ==> and
data/rsem-1.3.3+dfsg/pRSEM/phantompeakqualtools/spp_1.10.1_on_R3.3/src/cdensum.c:9: dout ==> doubt
data/rsem-1.3.3+dfsg/pRSEM/phantompeakqualtools/spp_1.10.1_on_R3.3/src/cdensum.c:12: dout ==> doubt
data/rsem-1.3.3+dfsg/pRSEM/phantompeakqualtools/spp_1.10.1_on_R3.3/src/cdensum.c:30: dout ==> doubt
data/rsem-1.3.3+dfsg/pRSEM/phantompeakqualtools/spp_1.10.1_on_R3.3/src/cdensum.c:37: dout ==> doubt
data/rsem-1.3.3+dfsg/pRSEM/phantompeakqualtools/spp_1.10.1_on_R3.3/src/cdensum.c:41: dout ==> doubt
data/rsem-1.3.3+dfsg/pRSEM/phantompeakqualtools/spp_1.10.1_on_R3.3/src/cdensum.c:44: indecies ==> indices
data/rsem-1.3.3+dfsg/pRSEM/phantompeakqualtools/spp_1.10.1_on_R3.3/src/cdensum.c:58: dout ==> doubt
data/rsem-1.3.3+dfsg/pRSEM/phantompeakqualtools/spp_1.10.1_on_R3.3/src/cdensum.c:80: dout ==> doubt
data/rsem-1.3.3+dfsg/pRSEM/phantompeakqualtools/spp_1.10.1_on_R3.3/src/cdensum.c:83: indecies ==> indices
data/rsem-1.3.3+dfsg/pRSEM/phantompeakqualtools/spp_1.10.1_on_R3.3/src/cdensum.c:97: dout ==> doubt
data/rsem-1.3.3+dfsg/pRSEM/phantompeakqualtools/spp_1.10.1_on_R3.3/src/cdensum.c:121: dout ==> doubt
data/rsem-1.3.3+dfsg/pRSEM/phantompeakqualtools/spp_1.10.1_on_R3.3/src/cdensum.c:124: indecies ==> indices
data/rsem-1.3.3+dfsg/pRSEM/phantompeakqualtools/spp_1.10.1_on_R3.3/src/cdensum.c:138: dout ==> doubt
data/rsem-1.3.3+dfsg/pRSEM/phantompeakqualtools/spp_1.10.1_on_R3.3/src/maqread.cpp:146: ans ==> and
data/rsem-1.3.3+dfsg/pRSEM/phantompeakqualtools/spp_1.10.1_on_R3.3/src/maqread.cpp:147: ans ==> and
data/rsem-1.3.3+dfsg/pRSEM/phantompeakqualtools/spp_1.10.1_on_R3.3/src/maqread.cpp:195: ans ==> and
data/rsem-1.3.3+dfsg/pRSEM/phantompeakqualtools/spp_1.10.1_on_R3.3/src/maqread.cpp:198: ans ==> and
data/rsem-1.3.3+dfsg/pRSEM/phantompeakqualtools/spp_1.10.1_on_R3.3/src/maqread.cpp:205: ans ==> and
data/rsem-1.3.3+dfsg/pRSEM/phantompeakqualtools/spp_1.10.1_on_R3.3/src/peaks.cpp:94: indecies ==> indices
data/rsem-1.3.3+dfsg/pRSEM/phantompeakqualtools/spp_1.10.1_on_R3.3/src/peaks.cpp:101: nd ==> and, 2nd
data/rsem-1.3.3+dfsg/pRSEM/phantompeakqualtools/spp_1.10.1_on_R3.3/src/peaks.cpp:104: nd ==> and, 2nd
data/rsem-1.3.3+dfsg/pRSEM/phantompeakqualtools/spp_1.10.1_on_R3.3/src/peaks.cpp:107: nd ==> and, 2nd
data/rsem-1.3.3+dfsg/pRSEM/phantompeakqualtools/spp_1.10.1_on_R3.3/src/peaks.cpp:113: nd ==> and, 2nd
data/rsem-1.3.3+dfsg/pRSEM/phantompeakqualtools/spp_1.10.1_on_R3.3/src/peaks.cpp:122: nd ==> and, 2nd
data/rsem-1.3.3+dfsg/pRSEM/phantompeakqualtools/spp_1.10.1_on_R3.3/src/peaks.cpp:127: nd ==> and, 2nd
data/rsem-1.3.3+dfsg/pRSEM/phantompeakqualtools/spp_1.10.1_on_R3.3/src/peaks.cpp:190: indecies ==> indices
data/rsem-1.3.3+dfsg/pRSEM/phantompeakqualtools/spp_1.10.1_on_R3.3/src/peaks.cpp:514: indecies ==> indices
data/rsem-1.3.3+dfsg/pRSEM/phantompeakqualtools/spp_1.10.1_on_R3.3/src/peaks.cpp:541: boudnary ==> boundary
data/rsem-1.3.3+dfsg/pRSEM/phantompeakqualtools/spp_1.10.1_on_R3.3/src/wdl.cpp:29: hist ==> heist, his
data/rsem-1.3.3+dfsg/pRSEM/phantompeakqualtools/spp_1.10.1_on_R3.3/src/wdl.cpp:30: hist ==> heist, his
data/rsem-1.3.3+dfsg/pRSEM/phantompeakqualtools/spp_1.10.1_on_R3.3/src/wdl.cpp:38: hist ==> heist, his
data/rsem-1.3.3+dfsg/pRSEM/phantompeakqualtools/spp_1.10.1_on_R3.3/src/wdl.cpp:39: hist ==> heist, his
data/rsem-1.3.3+dfsg/pRSEM/phantompeakqualtools/spp_1.10.1_on_R3.3/src/wdl.cpp:183: varn ==> warn
data/rsem-1.3.3+dfsg/pRSEM/phantompeakqualtools/spp_1.10.1_on_R3.3/src/wdl.cpp:199: varn ==> warn
data/rsem-1.3.3+dfsg/pRSEM/phantompeakqualtools/spp_1.10.1_on_R3.3/src/wdl.cpp:207: varn ==> warn
data/rsem-1.3.3+dfsg/pRSEM/phantompeakqualtools/spp_1.10.1_on_R3.3/src/wdl.cpp:248: varn ==> warn
data/rsem-1.3.3+dfsg/pRSEM/phantompeakqualtools/spp_1.10.1_on_R3.3/src/wdl.cpp:257: varn ==> warn
data/rsem-1.3.3+dfsg/pRSEM/phantompeakqualtools/spp_1.10.1_on_R3.3/src/wdl.cpp:257: varn ==> warn
data/rsem-1.3.3+dfsg/pRSEM/phantompeakqualtools/spp_1.10.1_on_R3.3/src/wdl.cpp:257: varn ==> warn
data/rsem-1.3.3+dfsg/pRSEM/phantompeakqualtools/spp_1.10.1_on_R3.3/src/wdl.cpp:345: hist ==> heist, his
data/rsem-1.3.3+dfsg/pRSEM/phantompeakqualtools/spp_1.10.1_on_R3.3/src/wdl.cpp:346: hist ==> heist, his
data/rsem-1.3.3+dfsg/pRSEM/phantompeakqualtools/spp_1.10.1_on_R3.3/src/wdl.cpp:355: hist ==> heist, his
data/rsem-1.3.3+dfsg/pRSEM/phantompeakqualtools/spp_1.10.1_on_R3.3/src/wdl.cpp:356: hist ==> heist, his
data/rsem-1.3.3+dfsg/.pc/2to3.patch/rsem-gff3-to-gtf:302: successully ==> successfully
data/rsem-1.3.3+dfsg/.pc/2to3.patch/pRSEM/Prsem.py:170: contect ==> contact, context, connect
data/rsem-1.3.3+dfsg/.pc/2to3.patch/pRSEM/Transcript.py:23: postion ==> position
data/rsem-1.3.3+dfsg/.pc/2to3.patch/pRSEM/Transcript.py:26: postion ==> position
data/rsem-1.3.3+dfsg/.pc/2to3.patch/pRSEM/Util.py:41: singal ==> signal, single