data/ruby-bio-2.0.1/README_DEV.rdoc:196: intialize ==> initialize
data/ruby-bio-2.0.1/README_DEV.rdoc:229: refering ==> referring
data/ruby-bio-2.0.1/README_DEV.rdoc:349: commiting ==> committing
data/ruby-bio-2.0.1/KNOWN_ISSUES.rdoc:148: makeing ==> making
data/ruby-bio-2.0.1/RELEASE_NOTES.rdoc:49: separete ==> separate
data/ruby-bio-2.0.1/RELEASE_NOTES.rdoc:151: Taxonmy ==> Taxonomy
data/ruby-bio-2.0.1/RELEASE_NOTES.rdoc:153: separete ==> separate
data/ruby-bio-2.0.1/RELEASE_NOTES.rdoc:155: separete ==> separate
data/ruby-bio-2.0.1/RELEASE_NOTES.rdoc:156: separete ==> separate
data/ruby-bio-2.0.1/Rakefile:2: developement ==> development
data/ruby-bio-2.0.1/Rakefile:43: extraversion ==> extroversion
data/ruby-bio-2.0.1/Rakefile:44: extraversion ==> extroversion
data/ruby-bio-2.0.1/Rakefile:44: extraversion ==> extroversion
data/ruby-bio-2.0.1/Rakefile:46: extraversion ==> extroversion
data/ruby-bio-2.0.1/README.rdoc:125: Berkley ==> Berkeley
data/ruby-bio-2.0.1/ChangeLog:348: separete ==> separate
data/ruby-bio-2.0.1/ChangeLog:357: existance ==> existence
data/ruby-bio-2.0.1/ChangeLog:373: existance ==> existence
data/ruby-bio-2.0.1/ChangeLog:1141: spliting ==> splitting
data/ruby-bio-2.0.1/test/data/KEGG/K02338.orthology:47: ECT ==> ETC
data/ruby-bio-2.0.1/test/data/KEGG/K02338.orthology:67: SEH ==> SHE
data/ruby-bio-2.0.1/test/data/KEGG/K02338.orthology:200: ACI ==> ACPI
data/ruby-bio-2.0.1/test/data/KEGG/K02338.orthology:273: AFE ==> SAFE
data/ruby-bio-2.0.1/test/data/KEGG/K02338.orthology:434: ACN ==> CAN, ACNE
data/ruby-bio-2.0.1/test/data/KEGG/K02338.orthology:572: SAV ==> SAVE
data/ruby-bio-2.0.1/test/data/KEGG/K02338.orthology:587: SER ==> SET
data/ruby-bio-2.0.1/test/data/KEGG/K02338.orthology:875: BRE ==> BE, BRIE
data/ruby-bio-2.0.1/test/data/KEGG/K02338.orthology:1022: TYE ==> TYPE, TIE
data/ruby-bio-2.0.1/test/data/KEGG/1.1.1.1.enzyme:44: hsa ==> has
data/ruby-bio-2.0.1/test/data/KEGG/1.1.1.1.enzyme:72: HSA ==> HAS
data/ruby-bio-2.0.1/test/data/KEGG/1.1.1.1.enzyme:198: ECT ==> ETC
data/ruby-bio-2.0.1/test/data/KEGG/1.1.1.1.enzyme:213: SEH ==> SHE
data/ruby-bio-2.0.1/test/data/KEGG/1.1.1.1.enzyme:319: ACI ==> ACPI
data/ruby-bio-2.0.1/test/data/KEGG/1.1.1.1.enzyme:373: AFE ==> SAFE
data/ruby-bio-2.0.1/test/data/KEGG/1.1.1.1.enzyme:603: SAV ==> SAVE
data/ruby-bio-2.0.1/test/data/KEGG/1.1.1.1.enzyme:619: SER ==> SET
data/ruby-bio-2.0.1/test/data/KEGG/1.1.1.1.enzyme:879: TYE ==> TYPE, TIE
data/ruby-bio-2.0.1/test/data/KEGG/C00025.compound:47: ALS ==> ALSO
data/ruby-bio-2.0.1/test/data/KEGG/G00024.glycan:3: Ser ==> Set
data/ruby-bio-2.0.1/test/data/KEGG/G00024.glycan:4: Ser ==> Set
data/ruby-bio-2.0.1/test/data/KEGG/G00024.glycan:41: Ser ==> Set
data/ruby-bio-2.0.1/test/data/KEGG/hsa00790.pathway:14: hsa ==> has
data/ruby-bio-2.0.1/test/data/genbank/CAA35997.gp:13: Saphire ==> Sapphire
data/ruby-bio-2.0.1/test/data/uniprot/p53_human.uniprot:175: Grammer ==> Grammar
data/ruby-bio-2.0.1/test/data/uniprot/p53_human.uniprot:291: Guarente ==> Guarantee
data/ruby-bio-2.0.1/test/data/uniprot/p53_human.uniprot:316: Ser ==> Set
data/ruby-bio-2.0.1/test/data/uniprot/p53_human.uniprot:368: Yau ==> You, yaw
data/ruby-bio-2.0.1/test/data/uniprot/p53_human.uniprot:730: Ser ==> Set
data/ruby-bio-2.0.1/test/data/blast/blastp-multi.m7:170: ND ==> AND, 2ND
data/ruby-bio-2.0.1/test/data/fastq/longreads_original_sanger.fastq:52: BA ==> BY, BE
data/ruby-bio-2.0.1/test/data/fastq/longreads_as_sanger.fastq:20: BA ==> BY, BE
data/ruby-bio-2.0.1/test/data/rpsblast/misc.rpsblast:156: TE ==> THE, BE, WE
data/ruby-bio-2.0.1/test/data/soft/GSE3457_family_partial.soft:14: seperate ==> separate
data/ruby-bio-2.0.1/test/data/soft/GSE3457_family_partial.soft:229: PTD ==> PDF
data/ruby-bio-2.0.1/test/data/soft/GSE3457_family_partial.soft:295: Ser ==> Set
data/ruby-bio-2.0.1/test/data/soft/GSE3457_family_partial.soft:498: PTD ==> PDF
data/ruby-bio-2.0.1/test/data/soft/GSE3457_family_partial.soft:747: PTD ==> PDF
data/ruby-bio-2.0.1/test/data/paml/codeml/models/results0-3.txt:46: Ser ==> Set
data/ruby-bio-2.0.1/test/data/paml/codeml/models/results0-3.txt:56: Ser ==> Set
data/ruby-bio-2.0.1/test/data/paml/codeml/models/results0-3.txt:107: Ser ==> Set
data/ruby-bio-2.0.1/test/data/paml/codeml/models/results0-3.txt:117: Ser ==> Set
data/ruby-bio-2.0.1/test/data/paml/codeml/models/results7-8.txt:46: Ser ==> Set
data/ruby-bio-2.0.1/test/data/paml/codeml/models/results7-8.txt:56: Ser ==> Set
data/ruby-bio-2.0.1/test/data/paml/codeml/models/results7-8.txt:107: Ser ==> Set
data/ruby-bio-2.0.1/test/data/paml/codeml/models/results7-8.txt:117: Ser ==> Set
data/ruby-bio-2.0.1/test/unit/bio/test_sequence.rb:261: Ser ==> Set
data/ruby-bio-2.0.1/test/unit/bio/test_pathway.rb:156: depencency ==> dependency
data/ruby-bio-2.0.1/test/unit/bio/test_pathway.rb:160: depencency ==> dependency
data/ruby-bio-2.0.1/test/unit/bio/test_pathway.rb:177: depencency ==> dependency
data/ruby-bio-2.0.1/test/unit/bio/test_pathway.rb:181: depencency ==> dependency
data/ruby-bio-2.0.1/test/unit/bio/test_pathway.rb:198: depencency ==> dependency
data/ruby-bio-2.0.1/test/unit/bio/test_pathway.rb:202: depencency ==> dependency
data/ruby-bio-2.0.1/test/unit/bio/test_pathway.rb:220: depencency ==> dependency
data/ruby-bio-2.0.1/test/unit/bio/test_pathway.rb:224: depencency ==> dependency
data/ruby-bio-2.0.1/test/unit/bio/test_pathway.rb:235: depencency ==> dependency
data/ruby-bio-2.0.1/test/unit/bio/test_pathway.rb:239: depencency ==> dependency
data/ruby-bio-2.0.1/test/unit/bio/test_pathway.rb:317: aviod ==> avoid
data/ruby-bio-2.0.1/test/unit/bio/io/flatfile/test_autodetection.rb:155: OT ==> TO, OF, OR
data/ruby-bio-2.0.1/test/unit/bio/io/flatfile/test_autodetection.rb:218: BA ==> BY, BE
data/ruby-bio-2.0.1/test/unit/bio/util/test_contingency_table.rb:27: upto ==> up to
data/ruby-bio-2.0.1/test/unit/bio/util/test_contingency_table.rb:28: upto ==> up to
data/ruby-bio-2.0.1/test/unit/bio/db/test_litdb.rb:26: infromation ==> information
data/ruby-bio-2.0.1/test/unit/bio/db/test_litdb.rb:57: Refence ==> Reference
data/ruby-bio-2.0.1/test/unit/bio/db/test_fastq.rb:185: BA ==> BY, BE
data/ruby-bio-2.0.1/test/unit/bio/db/pdb/test_pdb.rb:33: SER ==> SET
data/ruby-bio-2.0.1/test/unit/bio/db/pdb/test_pdb.rb:60: SER ==> SET
data/ruby-bio-2.0.1/test/unit/bio/db/pdb/test_pdb.rb:940: SER ==> SET
data/ruby-bio-2.0.1/test/unit/bio/db/pdb/test_pdb.rb:942: SER ==> SET
data/ruby-bio-2.0.1/test/unit/bio/db/pdb/test_pdb.rb:943: SER ==> SET
data/ruby-bio-2.0.1/test/unit/bio/db/pdb/test_pdb.rb:945: SER ==> SET
data/ruby-bio-2.0.1/test/unit/bio/db/pdb/test_pdb.rb:946: SER ==> SET
data/ruby-bio-2.0.1/test/unit/bio/db/pdb/test_pdb.rb:948: SER ==> SET
data/ruby-bio-2.0.1/test/unit/bio/db/pdb/test_pdb.rb:967: SER ==> SET
data/ruby-bio-2.0.1/test/unit/bio/db/pdb/test_pdb.rb:2220: SER ==> SET
data/ruby-bio-2.0.1/test/unit/bio/db/pdb/test_pdb.rb:2269: conect ==> connect
data/ruby-bio-2.0.1/test/unit/bio/db/pdb/test_pdb.rb:2269: CONECT ==> CONNECT
data/ruby-bio-2.0.1/test/unit/bio/db/pdb/test_pdb.rb:2274: conect ==> connect
data/ruby-bio-2.0.1/test/unit/bio/db/genbank/test_genpept.rb:18: soruce ==> source, spruce
data/ruby-bio-2.0.1/test/unit/bio/db/genbank/test_genpept.rb:18: dosen't ==> doesn't
data/ruby-bio-2.0.1/test/unit/bio/db/genbank/test_common.rb:53: neccesary ==> necessary
data/ruby-bio-2.0.1/test/unit/bio/db/kegg/test_glycan.rb:72: Ser ==> Set
data/ruby-bio-2.0.1/test/unit/bio/db/kegg/test_glycan.rb:142: Ser ==> Set
data/ruby-bio-2.0.1/test/unit/bio/db/kegg/test_compound.rb:58: ALS ==> ALSO
data/ruby-bio-2.0.1/test/unit/bio/db/kegg/test_compound.rb:111: ALS ==> ALSO
data/ruby-bio-2.0.1/test/unit/bio/db/kegg/test_pathway.rb:977: hsa ==> has
data/ruby-bio-2.0.1/test/unit/bio/db/embl/test_uniprotkb_new_part.rb:2: psudo ==> pseudo
data/ruby-bio-2.0.1/test/unit/bio/db/fasta/test_defline.rb:23: exaple ==> example
data/ruby-bio-2.0.1/test/unit/bio/db/fasta/test_defline.rb:24: exaple ==> example
data/ruby-bio-2.0.1/test/unit/bio/db/fasta/test_defline.rb:25: exaple ==> example
data/ruby-bio-2.0.1/test/unit/bio/db/fasta/test_defline.rb:26: exaple ==> example
data/ruby-bio-2.0.1/test/unit/bio/db/fasta/test_defline.rb:99: refering ==> referring
data/ruby-bio-2.0.1/test/unit/bio/db/fasta/test_defline.rb:108: refering ==> referring
data/ruby-bio-2.0.1/test/unit/bio/db/fasta/test_defline.rb:120: dosen't ==> doesn't
data/ruby-bio-2.0.1/test/unit/bio/db/fasta/test_defline.rb:132: dosen't ==> doesn't
data/ruby-bio-2.0.1/test/unit/bio/db/fasta/test_defline.rb:138: dosen't ==> doesn't
data/ruby-bio-2.0.1/test/unit/bio/db/fasta/test_defline.rb:141: exaple ==> example
data/ruby-bio-2.0.1/test/unit/bio/appl/hmmer/test_report.rb:310: hist ==> heist, his
data/ruby-bio-2.0.1/test/unit/bio/appl/hmmer/test_report.rb:311: hist ==> heist, his
data/ruby-bio-2.0.1/test/unit/bio/appl/blast/test_report.rb:1132: ND ==> AND, 2ND
data/ruby-bio-2.0.1/test/unit/bio/appl/blast/test_report.rb:1243: ND ==> AND, 2ND
data/ruby-bio-2.0.1/test/unit/bio/sequence/test_aa.rb:78: Ser ==> Set
data/ruby-bio-2.0.1/test/unit/bio/sequence/test_common.rb:246: hist ==> heist, his
data/ruby-bio-2.0.1/test/unit/bio/sequence/test_common.rb:249: hist ==> heist, his
data/ruby-bio-2.0.1/test/unit/bio/sequence/test_common.rb:261: hist ==> heist, his
data/ruby-bio-2.0.1/test/unit/bio/sequence/test_common.rb:276: hist ==> heist, his
data/ruby-bio-2.0.1/test/unit/bio/sequence/test_common.rb:277: hist ==> heist, his
data/ruby-bio-2.0.1/test/unit/bio/sequence/test_common.rb:278: hist ==> heist, his
data/ruby-bio-2.0.1/test/unit/bio/sequence/test_common.rb:300: sucess ==> success
data/ruby-bio-2.0.1/test/functional/bio/test_command.rb:34: FileTest ==> file test
data/ruby-bio-2.0.1/test/functional/bio/test_command.rb:146: FileTest ==> file test
data/ruby-bio-2.0.1/test/functional/bio/test_command.rb:202: FileTest ==> file test
data/ruby-bio-2.0.1/test/network/bio/db/kegg/test_genes_hsa7422.rb:28: hsa ==> has
data/ruby-bio-2.0.1/lib/bio.rb:150: chage ==> change, charge
data/ruby-bio-2.0.1/lib/bio/version.rb:16: Existance ==> Existence
data/ruby-bio-2.0.1/lib/bio/db.rb:171: wether ==> weather, whether
data/ruby-bio-2.0.1/lib/bio/pathway.rb:143: genarating ==> generating
data/ruby-bio-2.0.1/lib/bio/pathway.rb:225: depencency ==> dependency
data/ruby-bio-2.0.1/lib/bio/pathway.rb:242: depencency ==> dependency
data/ruby-bio-2.0.1/lib/bio/pathway.rb:272: informations ==> information
data/ruby-bio-2.0.1/lib/bio/pathway.rb:294: depencency ==> dependency
data/ruby-bio-2.0.1/lib/bio/pathway.rb:308: depencency ==> dependency
data/ruby-bio-2.0.1/lib/bio/pathway.rb:313: depencency ==> dependency
data/ruby-bio-2.0.1/lib/bio/pathway.rb:319: depencency ==> dependency
data/ruby-bio-2.0.1/lib/bio/pathway.rb:479: bahavior ==> behavior
data/ruby-bio-2.0.1/lib/bio/pathway.rb:490: depencency ==> dependency
data/ruby-bio-2.0.1/lib/bio/pathway.rb:500: depencency ==> dependency
data/ruby-bio-2.0.1/lib/bio/pathway.rb:506: depencency ==> dependency
data/ruby-bio-2.0.1/lib/bio/pathway.rb:510: depencency ==> dependency
data/ruby-bio-2.0.1/lib/bio/pathway.rb:539: depencency ==> dependency
data/ruby-bio-2.0.1/lib/bio/pathway.rb:543: depencency ==> dependency
data/ruby-bio-2.0.1/lib/bio/pathway.rb:617: alogrithm ==> algorithm
data/ruby-bio-2.0.1/lib/bio/pathway.rb:640: minimam ==> minimum
data/ruby-bio-2.0.1/lib/bio/pathway.rb:762: arry ==> array, carry
data/ruby-bio-2.0.1/lib/bio/tree.rb:594: concatinated ==> concatenated
data/ruby-bio-2.0.1/lib/bio/tree.rb:608: Retruns ==> Returns
data/ruby-bio-2.0.1/lib/bio/tree.rb:787: ommited ==> omitted
data/ruby-bio-2.0.1/lib/bio/tree.rb:815: ommitted ==> omitted
data/ruby-bio-2.0.1/lib/bio/command.rb:173: assersion ==> assertion
data/ruby-bio-2.0.1/lib/bio/command.rb:633: essense ==> essence
data/ruby-bio-2.0.1/lib/bio/command.rb:675: temporay ==> temporary
data/ruby-bio-2.0.1/lib/bio/alignment.rb:571: stirng ==> string
data/ruby-bio-2.0.1/lib/bio/alignment.rb:590: stirng ==> string
data/ruby-bio-2.0.1/lib/bio/alignment.rb:607: stirng ==> string
data/ruby-bio-2.0.1/lib/bio/alignment.rb:816: Seqeunce ==> Sequence
data/ruby-bio-2.0.1/lib/bio/alignment.rb:2114: Convets ==> Converts
data/ruby-bio-2.0.1/lib/bio/sequence.rb:87: intialize ==> initialize
data/ruby-bio-2.0.1/lib/bio/sequence.rb:226: enrty ==> entry
data/ruby-bio-2.0.1/lib/bio/reference.rb:537: Reseach ==> Research
data/ruby-bio-2.0.1/lib/bio/io/togows.rb:44: sleeped ==> slept
data/ruby-bio-2.0.1/lib/bio/io/togows.rb:102: desribed ==> described
data/ruby-bio-2.0.1/lib/bio/io/flatfile.rb:247: everytime ==> every time
data/ruby-bio-2.0.1/lib/bio/io/flatfile.rb:247: everytime ==> every time
data/ruby-bio-2.0.1/lib/bio/io/flatfile.rb:282: everytime ==> every time
data/ruby-bio-2.0.1/lib/bio/io/flatfile.rb:399: Plese ==> Please
data/ruby-bio-2.0.1/lib/bio/io/pubmed.rb:133: recomended ==> recommended
data/ruby-bio-2.0.1/lib/bio/io/registry.rb:41: configration ==> configuration
data/ruby-bio-2.0.1/lib/bio/io/registry.rb:70: directry ==> directory
data/ruby-bio-2.0.1/lib/bio/io/flatfile/buffer.rb:47: explicity ==> explicitly
data/ruby-bio-2.0.1/lib/bio/io/flatfile/buffer.rb:217: bahavior ==> behavior
data/ruby-bio-2.0.1/lib/bio/io/flatfile/buffer.rb:289: addes ==> adds
data/ruby-bio-2.0.1/lib/bio/io/flatfile/buffer.rb:297: addes ==> adds
data/ruby-bio-2.0.1/lib/bio/io/flatfile/index.rb:320: recomended ==> recommended
data/ruby-bio-2.0.1/lib/bio/io/flatfile/index.rb:358: concatinated ==> concatenated
data/ruby-bio-2.0.1/lib/bio/io/flatfile/index.rb:1217: FileTest ==> file test
data/ruby-bio-2.0.1/lib/bio/io/flatfile/indexer.rb:456: makeing ==> making
data/ruby-bio-2.0.1/lib/bio/io/flatfile/indexer.rb:509: makeing ==> making
data/ruby-bio-2.0.1/lib/bio/io/flatfile/indexer.rb:592: FileTest ==> file test
data/ruby-bio-2.0.1/lib/bio/io/flatfile/indexer.rb:605: FileTest ==> file test
data/ruby-bio-2.0.1/lib/bio/io/flatfile/indexer.rb:667: FileTest ==> file test
data/ruby-bio-2.0.1/lib/bio/io/flatfile/bdb.rb:2: Berkley ==> Berkeley
data/ruby-bio-2.0.1/lib/bio/io/flatfile/autodetection.rb:327: onece ==> once
data/ruby-bio-2.0.1/lib/bio/io/flatfile/autodetection.rb:333: upto ==> up to
data/ruby-bio-2.0.1/lib/bio/data/codontable.rb:688: acn ==> can, acne
data/ruby-bio-2.0.1/lib/bio/data/codontable.rb:690: acn ==> can, acne
data/ruby-bio-2.0.1/lib/bio/data/codontable.rb:692: acn ==> can, acne
data/ruby-bio-2.0.1/lib/bio/data/codontable.rb:694: acn ==> can, acne
data/ruby-bio-2.0.1/lib/bio/data/codontable.rb:696: acn ==> can, acne
data/ruby-bio-2.0.1/lib/bio/data/codontable.rb:698: acn ==> can, acne
data/ruby-bio-2.0.1/lib/bio/data/codontable.rb:700: acn ==> can, acne
data/ruby-bio-2.0.1/lib/bio/data/codontable.rb:702: acn ==> can, acne
data/ruby-bio-2.0.1/lib/bio/data/codontable.rb:704: acn ==> can, acne
data/ruby-bio-2.0.1/lib/bio/data/codontable.rb:706: acn ==> can, acne
data/ruby-bio-2.0.1/lib/bio/data/codontable.rb:708: acn ==> can, acne
data/ruby-bio-2.0.1/lib/bio/data/codontable.rb:710: acn ==> can, acne
data/ruby-bio-2.0.1/lib/bio/data/codontable.rb:712: acn ==> can, acne
data/ruby-bio-2.0.1/lib/bio/data/codontable.rb:714: acn ==> can, acne
data/ruby-bio-2.0.1/lib/bio/data/codontable.rb:716: acn ==> can, acne
data/ruby-bio-2.0.1/lib/bio/data/codontable.rb:718: acn ==> can, acne
data/ruby-bio-2.0.1/lib/bio/data/codontable.rb:720: acn ==> can, acne
data/ruby-bio-2.0.1/lib/bio/util/contingency_table.rb:73: upto ==> up to
data/ruby-bio-2.0.1/lib/bio/util/contingency_table.rb:74: upto ==> up to
data/ruby-bio-2.0.1/lib/bio/util/contingency_table.rb:105: upto ==> up to
data/ruby-bio-2.0.1/lib/bio/util/contingency_table.rb:106: upto ==> up to
data/ruby-bio-2.0.1/lib/bio/util/restriction_enzyme.rb:25: documentaion ==> documentation
data/ruby-bio-2.0.1/lib/bio/util/restriction_enzyme/cut_symbol.rb:35: sequece ==> sequence
data/ruby-bio-2.0.1/lib/bio/util/restriction_enzyme/cut_symbol.rb:47: sequece ==> sequence
data/ruby-bio-2.0.1/lib/bio/util/restriction_enzyme/cut_symbol.rb:55: sequece ==> sequence
data/ruby-bio-2.0.1/lib/bio/util/restriction_enzyme/analysis_basic.rb:59: seperate ==> separate
data/ruby-bio-2.0.1/lib/bio/util/restriction_enzyme/analysis_basic.rb:192: indicies ==> indices
data/ruby-bio-2.0.1/lib/bio/util/restriction_enzyme/analysis_basic.rb:202: indicies ==> indices
data/ruby-bio-2.0.1/lib/bio/util/restriction_enzyme/double_stranded.rb:158: seqeunce ==> sequence
data/ruby-bio-2.0.1/lib/bio/util/restriction_enzyme/dense_int_array.rb:74: upto ==> up to
data/ruby-bio-2.0.1/lib/bio/util/restriction_enzyme/analysis.rb:78: specificy ==> specify, specificity, specifically
data/ruby-bio-2.0.1/lib/bio/util/restriction_enzyme/enzymes.yaml:5642: AciI ==> ascii
data/ruby-bio-2.0.1/lib/bio/util/restriction_enzyme/enzymes.yaml:5649: AciI ==> ascii
data/ruby-bio-2.0.1/lib/bio/util/restriction_enzyme/single_strand/cut_locations_in_enzyme_notation.rb:16: thier ==> their
data/ruby-bio-2.0.1/lib/bio/util/restriction_enzyme/range/vertical_cut_range.rb:35: accomadate ==> accommodate
data/ruby-bio-2.0.1/lib/bio/util/restriction_enzyme/range/sequence_range.rb:23: accomadates ==> accommodates
data/ruby-bio-2.0.1/lib/bio/util/restriction_enzyme/range/sequence_range.rb:215: upto ==> up to
data/ruby-bio-2.0.1/lib/bio/util/restriction_enzyme/range/sequence_range/calculated_cuts.rb:111: inbetween ==> between, in between
data/ruby-bio-2.0.1/lib/bio/util/restriction_enzyme/range/sequence_range/calculated_cuts.rb:114: upto ==> up to
data/ruby-bio-2.0.1/lib/bio/util/restriction_enzyme/range/sequence_range/calculated_cuts.rb:116: upto ==> up to
data/ruby-bio-2.0.1/lib/bio/util/restriction_enzyme/range/sequence_range/calculated_cuts.rb:149: initalization ==> initialization
data/ruby-bio-2.0.1/lib/bio/util/restriction_enzyme/range/sequence_range/calculated_cuts.rb:154: initalization ==> initialization
data/ruby-bio-2.0.1/lib/bio/util/restriction_enzyme/range/sequence_range/calculated_cuts.rb:255: upto ==> up to
data/ruby-bio-2.0.1/lib/bio/util/restriction_enzyme/double_stranded/cut_location_pair.rb:63: initalize ==> initialize
data/ruby-bio-2.0.1/lib/bio/db/go.rb:77: correspondig ==> corresponding
data/ruby-bio-2.0.1/lib/bio/db/go.rb:196: Retruns ==> Returns
data/ruby-bio-2.0.1/lib/bio/db/go.rb:229: Retruns ==> Returns
data/ruby-bio-2.0.1/lib/bio/db/soft.rb:372: Unkown ==> Unknown
data/ruby-bio-2.0.1/lib/bio/db/transfac.rb:131: BA ==> BY, BE
data/ruby-bio-2.0.1/lib/bio/db/transfac.rb:132: ba ==> by, be
data/ruby-bio-2.0.1/lib/bio/db/fantom.rb:456: becase ==> because
data/ruby-bio-2.0.1/lib/bio/db/prosite.rb:465: Ser ==> Set
data/ruby-bio-2.0.1/lib/bio/db/prosite.rb:465: Ser ==> Set
data/ruby-bio-2.0.1/lib/bio/db/aaindex.rb:357: upto ==> up to
data/ruby-bio-2.0.1/lib/bio/db/newick.rb:34: delemiter ==> delimiter
data/ruby-bio-2.0.1/lib/bio/db/newick.rb:67: boostrap ==> bootstrap
data/ruby-bio-2.0.1/lib/bio/db/newick.rb:150: boostrap ==> bootstrap
data/ruby-bio-2.0.1/lib/bio/db/gff.rb:1573: recomended ==> recommended
data/ruby-bio-2.0.1/lib/bio/db/gff.rb:1737: characers ==> characters
data/ruby-bio-2.0.1/lib/bio/db/rebase.rb:26: utilties ==> utilities
data/ruby-bio-2.0.1/lib/bio/db/nexus.rb:338: beginnig ==> beginning
data/ruby-bio-2.0.1/lib/bio/db/nexus.rb:359: depeding ==> depending
data/ruby-bio-2.0.1/lib/bio/db/pdb/chemicalcomponent.rb:59: CONECT ==> CONNECT
data/ruby-bio-2.0.1/lib/bio/db/pdb/chemicalcomponent.rb:62: CONECT ==> CONNECT
data/ruby-bio-2.0.1/lib/bio/db/pdb/chemicalcomponent.rb:193: conect ==> connect
data/ruby-bio-2.0.1/lib/bio/db/pdb/chemicalcomponent.rb:194: conect ==> connect
data/ruby-bio-2.0.1/lib/bio/db/pdb/chemicalcomponent.rb:196: CONECT ==> CONNECT
data/ruby-bio-2.0.1/lib/bio/db/pdb/chemicalcomponent.rb:204: conect ==> connect
data/ruby-bio-2.0.1/lib/bio/db/pdb/chemicalcomponent.rb:206: conect ==> connect
data/ruby-bio-2.0.1/lib/bio/db/pdb/pdb.rb:32: co-ordinate ==> coordinate
data/ruby-bio-2.0.1/lib/bio/db/pdb/pdb.rb:210: anumber ==> a number
data/ruby-bio-2.0.1/lib/bio/db/pdb/pdb.rb:419: Otherwaise ==> Otherwise
data/ruby-bio-2.0.1/lib/bio/db/pdb/pdb.rb:1170: CONECT ==> CONNECT
data/ruby-bio-2.0.1/lib/bio/db/pdb/pdb.rb:1171: CONECT ==> CONNECT
data/ruby-bio-2.0.1/lib/bio/db/pdb/pdb.rb:1612: strucutre ==> structure
data/ruby-bio-2.0.1/lib/bio/db/pdb/pdb.rb:1645: propogates ==> propagates
data/ruby-bio-2.0.1/lib/bio/db/pdb/pdb.rb:1645: heirarchy ==> hierarchy
data/ruby-bio-2.0.1/lib/bio/db/pdb/pdb.rb:1646: outputed ==> outputted
data/ruby-bio-2.0.1/lib/bio/db/pdb/utils.rb:195: heirarchy ==> hierarchy
data/ruby-bio-2.0.1/lib/bio/db/pdb/utils.rb:242: heirarchical ==> hierarchical
data/ruby-bio-2.0.1/lib/bio/db/genbank/format_genbank.rb:2: generater ==> generator
data/ruby-bio-2.0.1/lib/bio/db/genbank/format_genbank.rb:32: splitted ==> split
data/ruby-bio-2.0.1/lib/bio/db/genbank/common.rb:36: overrided ==> overrode, overridden
data/ruby-bio-2.0.1/lib/bio/db/kegg/reaction.rb:78: informations ==> information
data/ruby-bio-2.0.1/lib/bio/db/kegg/keggtab.rb:38: hsa ==> has
data/ruby-bio-2.0.1/lib/bio/db/kegg/keggtab.rb:40: hsa ==> has
data/ruby-bio-2.0.1/lib/bio/db/kegg/keggtab.rb:46: hsa ==> has
data/ruby-bio-2.0.1/lib/bio/db/kegg/keggtab.rb:90: hsa ==> has
data/ruby-bio-2.0.1/lib/bio/db/kegg/keggtab.rb:111: hsa ==> has
data/ruby-bio-2.0.1/lib/bio/db/kegg/kgml.rb:58: hsa ==> has
data/ruby-bio-2.0.1/lib/bio/db/fastq/format_fastq.rb:2: generater ==> generator
data/ruby-bio-2.0.1/lib/bio/db/fastq/format_fastq.rb:22: generater ==> generator
data/ruby-bio-2.0.1/lib/bio/db/embl/format_embl.rb:2: generater ==> generator
data/ruby-bio-2.0.1/lib/bio/db/embl/format_embl.rb:27: splitted ==> split
data/ruby-bio-2.0.1/lib/bio/db/embl/common.rb:235: refernece ==> reference
data/ruby-bio-2.0.1/lib/bio/db/embl/uniprotkb.rb:177: Retruns ==> Returns
data/ruby-bio-2.0.1/lib/bio/db/embl/uniprotkb.rb:246: CONTEINS ==> CONTAINS
data/ruby-bio-2.0.1/lib/bio/db/embl/uniprotkb.rb:249: CONTEINS ==> CONTAINS
data/ruby-bio-2.0.1/lib/bio/db/embl/uniprotkb.rb:442: Hashs ==> Hashes
data/ruby-bio-2.0.1/lib/bio/db/embl/uniprotkb.rb:549: refernece ==> reference
data/ruby-bio-2.0.1/lib/bio/db/embl/uniprotkb.rb:992: conteins ==> contains
data/ruby-bio-2.0.1/lib/bio/db/embl/uniprotkb.rb:1191: charactors ==> characters
data/ruby-bio-2.0.1/lib/bio/db/embl/uniprotkb.rb:1264: conteins ==> contains
data/ruby-bio-2.0.1/lib/bio/db/embl/uniprotkb.rb:1421: Sequece ==> Sequence
data/ruby-bio-2.0.1/lib/bio/db/embl/uniprotkb.rb:1422: Sequece ==> Sequence
data/ruby-bio-2.0.1/lib/bio/db/sanger_chromatogram/abif.rb:109: charcter ==> character
data/ruby-bio-2.0.1/lib/bio/db/fasta/defline.rb:72: informations ==> information
data/ruby-bio-2.0.1/lib/bio/db/fasta/format_fasta.rb:2: generater ==> generator
data/ruby-bio-2.0.1/lib/bio/db/fasta/format_fasta.rb:19: generater ==> generator
data/ruby-bio-2.0.1/lib/bio/db/fasta/qual.rb:101: attirbute ==> attribute
data/ruby-bio-2.0.1/lib/bio/db/fasta/format_qual.rb:2: generater ==> generator
data/ruby-bio-2.0.1/lib/bio/db/fasta/format_qual.rb:17: generater ==> generator
data/ruby-bio-2.0.1/lib/bio/db/fasta/format_qual.rb:87: generater ==> generator
data/ruby-bio-2.0.1/lib/bio/appl/psort.rb:125: skelton ==> skeleton
data/ruby-bio-2.0.1/lib/bio/appl/psort.rb:127: routin ==> routine, routing
data/ruby-bio-2.0.1/lib/bio/appl/psort.rb:130: skelton ==> skeleton
data/ruby-bio-2.0.1/lib/bio/appl/psort.rb:132: routin ==> routine, routing
data/ruby-bio-2.0.1/lib/bio/appl/psort.rb:221: setted ==> set
data/ruby-bio-2.0.1/lib/bio/appl/psort.rb:250: contein ==> contain
data/ruby-bio-2.0.1/lib/bio/appl/psort.rb:251: Taget ==> Target
data/ruby-bio-2.0.1/lib/bio/appl/psort.rb:259: contein ==> contain
data/ruby-bio-2.0.1/lib/bio/appl/psort.rb:352: setted ==> set
data/ruby-bio-2.0.1/lib/bio/appl/blast.rb:112: Undefiend ==> Undefined
data/ruby-bio-2.0.1/lib/bio/appl/blast.rb:218: Undefiend ==> Undefined
data/ruby-bio-2.0.1/lib/bio/appl/blast.rb:356: returnd ==> returned
data/ruby-bio-2.0.1/lib/bio/appl/pts1.rb:101: FUNTION ==> FUNCTION
data/ruby-bio-2.0.1/lib/bio/appl/hmmer/report.rb:148: reutrns ==> returns
data/ruby-bio-2.0.1/lib/bio/appl/hmmer/report.rb:159: infomation ==> information
data/ruby-bio-2.0.1/lib/bio/appl/blat/report.rb:301: comma-separeted ==> comma-separated
data/ruby-bio-2.0.1/lib/bio/appl/blat/report.rb:307: informations ==> information
data/ruby-bio-2.0.1/lib/bio/appl/blat/report.rb:319: informations ==> information
data/ruby-bio-2.0.1/lib/bio/appl/phylip/distance_matrix.rb:75: OTU ==> OUT
data/ruby-bio-2.0.1/lib/bio/appl/blast/report.rb:367: Formating ==> Formatting
data/ruby-bio-2.0.1/lib/bio/appl/blast/genomenet.rb:175: hsa ==> has
data/ruby-bio-2.0.1/lib/bio/appl/blast/rpsblast.rb:122: defalut ==> default
data/ruby-bio-2.0.1/lib/bio/appl/blast/rpsblast.rb:125: eqaul ==> equal
data/ruby-bio-2.0.1/lib/bio/appl/blast/rpsblast.rb:130: splitted ==> split
data/ruby-bio-2.0.1/lib/bio/appl/blast/rpsblast.rb:135: splitted ==> split
data/ruby-bio-2.0.1/lib/bio/appl/psort/report.rb:187: classe ==> class, classes
data/ruby-bio-2.0.1/lib/bio/appl/psort/report.rb:380: upto ==> up to
data/ruby-bio-2.0.1/lib/bio/appl/iprscan/report.rb:86: formated ==> formatted
data/ruby-bio-2.0.1/lib/bio/appl/iprscan/report.rb:86: Retruns ==> Returns
data/ruby-bio-2.0.1/lib/bio/appl/iprscan/report.rb:116: formated ==> formatted
data/ruby-bio-2.0.1/lib/bio/appl/iprscan/report.rb:116: Retruns ==> Returns
data/ruby-bio-2.0.1/lib/bio/appl/iprscan/report.rb:143: formated ==> formatted
data/ruby-bio-2.0.1/lib/bio/appl/iprscan/report.rb:199: formated ==> formatted
data/ruby-bio-2.0.1/lib/bio/appl/iprscan/report.rb:199: Retruns ==> Returns
data/ruby-bio-2.0.1/lib/bio/appl/sim4/report.rb:40: informations ==> information
data/ruby-bio-2.0.1/lib/bio/appl/sim4/report.rb:73: informations ==> information
data/ruby-bio-2.0.1/lib/bio/appl/sim4/report.rb:147: informations ==> information
data/ruby-bio-2.0.1/lib/bio/appl/sim4/report.rb:151: informations ==> information
data/ruby-bio-2.0.1/lib/bio/appl/sim4/report.rb:243: informations ==> information
data/ruby-bio-2.0.1/lib/bio/appl/sim4/report.rb:299: informations ==> information
data/ruby-bio-2.0.1/lib/bio/appl/sim4/report.rb:304: informations ==> information
data/ruby-bio-2.0.1/lib/bio/appl/bl2seq/report.rb:85: existance ==> existence
data/ruby-bio-2.0.1/lib/bio/appl/mafft/report.rb:172: tufure ==> future
data/ruby-bio-2.0.1/lib/bio/appl/spidey/report.rb:133: mismaches ==> mismatches
data/ruby-bio-2.0.1/lib/bio/appl/spidey/report.rb:139: informations ==> information
data/ruby-bio-2.0.1/lib/bio/appl/spidey/report.rb:144: informations ==> information
data/ruby-bio-2.0.1/lib/bio/appl/spidey/report.rb:257: informations ==> information
data/ruby-bio-2.0.1/lib/bio/appl/spidey/report.rb:370: informations ==> information
data/ruby-bio-2.0.1/lib/bio/appl/spidey/report.rb:380: informations ==> information
data/ruby-bio-2.0.1/lib/bio/appl/sosui/report.rb:81: Retruns ==> Returns
data/ruby-bio-2.0.1/lib/bio/appl/paml/baseml.rb:58: defalut ==> default
data/ruby-bio-2.0.1/lib/bio/appl/paml/yn00.rb:56: defalut ==> default
data/ruby-bio-2.0.1/lib/bio/appl/paml/codeml.rb:90: defalut ==> default
data/ruby-bio-2.0.1/lib/bio/sequence/adapter.rb:33: psudo ==> pseudo
data/ruby-bio-2.0.1/lib/bio/sequence/adapter.rb:80: psudo ==> pseudo
data/ruby-bio-2.0.1/lib/bio/sequence/adapter.rb:80: psudo ==> pseudo
data/ruby-bio-2.0.1/lib/bio/sequence/format.rb:37: generater ==> generator
data/ruby-bio-2.0.1/lib/bio/sequence/format.rb:65: generater ==> generator
data/ruby-bio-2.0.1/lib/bio/sequence/format.rb:69: generater ==> generator
data/ruby-bio-2.0.1/lib/bio/sequence/format.rb:255: featurs ==> features
data/ruby-bio-2.0.1/doc/Tutorial.rd.ja:531: Ser ==> Set
data/ruby-bio-2.0.1/doc/Tutorial.rd.ja:620: Ser ==> Set
data/ruby-bio-2.0.1/doc/Tutorial.rd.ja:621: Ser ==> Set
data/ruby-bio-2.0.1/doc/Tutorial.rd.ja:622: Ser ==> Set
data/ruby-bio-2.0.1/doc/Tutorial.rd.ja:623: Ser ==> Set
data/ruby-bio-2.0.1/doc/Tutorial.rd.ja:630: Ser ==> Set
data/ruby-bio-2.0.1/doc/Tutorial.rd.ja:631: Ser ==> Set
data/ruby-bio-2.0.1/doc/Tutorial.rd.ja:1366: tranlation ==> translation
data/ruby-bio-2.0.1/doc/Tutorial.rd.ja:1808: conect ==> connect
data/ruby-bio-2.0.1/doc/Tutorial.rd.ja:1808: CONECT ==> CONNECT
data/ruby-bio-2.0.1/doc/Tutorial.rd.ja:1812: conect ==> connect
data/ruby-bio-2.0.1/doc/Tutorial.rd.ja:1816: CONECT ==> CONNECT
data/ruby-bio-2.0.1/doc/Tutorial.rd.ja:1817: CONECT ==> CONNECT
data/ruby-bio-2.0.1/doc/Tutorial.rd.ja:1818: CONECT ==> CONNECT
data/ruby-bio-2.0.1/doc/Tutorial.rd.ja:1819: CONECT ==> CONNECT
data/ruby-bio-2.0.1/doc/Tutorial.rd.ja:1820: CONECT ==> CONNECT
data/ruby-bio-2.0.1/doc/Tutorial.rd.ja:1821: CONECT ==> CONNECT
data/ruby-bio-2.0.1/doc/Tutorial.rd.ja:1822: CONECT ==> CONNECT
data/ruby-bio-2.0.1/doc/Tutorial.rd.ja:1823: CONECT ==> CONNECT
data/ruby-bio-2.0.1/doc/Tutorial.rd.ja:1824: CONECT ==> CONNECT
data/ruby-bio-2.0.1/doc/Tutorial.rd.ja:1830: conect ==> connect
data/ruby-bio-2.0.1/doc/Tutorial.rd.ja:1879: conect ==> connect
data/ruby-bio-2.0.1/doc/Tutorial.rd.ja.html:435: Ser ==> Set
data/ruby-bio-2.0.1/doc/Tutorial.rd.ja.html:515: Ser ==> Set
data/ruby-bio-2.0.1/doc/Tutorial.rd.ja.html:516: Ser ==> Set
data/ruby-bio-2.0.1/doc/Tutorial.rd.ja.html:517: Ser ==> Set
data/ruby-bio-2.0.1/doc/Tutorial.rd.ja.html:518: Ser ==> Set
data/ruby-bio-2.0.1/doc/Tutorial.rd.ja.html:525: Ser ==> Set
data/ruby-bio-2.0.1/doc/Tutorial.rd.ja.html:526: Ser ==> Set
data/ruby-bio-2.0.1/doc/Tutorial.rd.ja.html:1133: tranlation ==> translation
data/ruby-bio-2.0.1/doc/Tutorial.rd.ja.html:1475: conect ==> connect
data/ruby-bio-2.0.1/doc/Tutorial.rd.ja.html:1475: CONECT ==> CONNECT
data/ruby-bio-2.0.1/doc/Tutorial.rd.ja.html:1478: conect ==> connect
data/ruby-bio-2.0.1/doc/Tutorial.rd.ja.html:1481: CONECT ==> CONNECT
data/ruby-bio-2.0.1/doc/Tutorial.rd.ja.html:1482: CONECT ==> CONNECT
data/ruby-bio-2.0.1/doc/Tutorial.rd.ja.html:1483: CONECT ==> CONNECT
data/ruby-bio-2.0.1/doc/Tutorial.rd.ja.html:1484: CONECT ==> CONNECT
data/ruby-bio-2.0.1/doc/Tutorial.rd.ja.html:1485: CONECT ==> CONNECT
data/ruby-bio-2.0.1/doc/Tutorial.rd.ja.html:1486: CONECT ==> CONNECT
data/ruby-bio-2.0.1/doc/Tutorial.rd.ja.html:1487: CONECT ==> CONNECT
data/ruby-bio-2.0.1/doc/Tutorial.rd.ja.html:1488: CONECT ==> CONNECT
data/ruby-bio-2.0.1/doc/Tutorial.rd.ja.html:1489: CONECT ==> CONNECT
data/ruby-bio-2.0.1/doc/Tutorial.rd.ja.html:1494: conect ==> connect
data/ruby-bio-2.0.1/doc/Tutorial.rd.ja.html:1539: conect ==> connect
data/ruby-bio-2.0.1/doc/RELEASE_NOTES-1.4.0.rdoc:44: Aliginment ==> Alignment
data/ruby-bio-2.0.1/doc/ChangeLog-1.5.0:1443: deperecated ==> deprecated
data/ruby-bio-2.0.1/doc/RELEASE_NOTES-1.5.0.rdoc:92: Imcompatible ==> Incompatible
data/ruby-bio-2.0.1/doc/RELEASE_NOTES-1.5.0.rdoc:277: makeing ==> making
data/ruby-bio-2.0.1/doc/ChangeLog-1.4.3:1272: erro ==> error
data/ruby-bio-2.0.1/doc/Tutorial.rd:979: corrent ==> correct, current
data/ruby-bio-2.0.1/doc/Tutorial.rd:1184: retrive ==> retrieve
data/ruby-bio-2.0.1/doc/Tutorial.rd:1189: comunicate ==> communicate
data/ruby-bio-2.0.1/doc/Tutorial.rd:1209: contaning ==> containing
data/ruby-bio-2.0.1/doc/Tutorial.rd:1226: retriving ==> retrieving
data/ruby-bio-2.0.1/doc/Tutorial.rd:1286: intepreter ==> interpreter
data/ruby-bio-2.0.1/doc/Tutorial.rd:1375: interpeter ==> interpreter
data/ruby-bio-2.0.1/doc/Tutorial.rd.html:788: corrent ==> correct, current
data/ruby-bio-2.0.1/doc/Tutorial.rd.html:953: retrive ==> retrieve
data/ruby-bio-2.0.1/doc/Tutorial.rd.html:959: comunicate ==> communicate
data/ruby-bio-2.0.1/doc/Tutorial.rd.html:976: contaning ==> containing
data/ruby-bio-2.0.1/doc/Tutorial.rd.html:993: retriving ==> retrieving
data/ruby-bio-2.0.1/doc/Tutorial.rd.html:1036: intepreter ==> interpreter
data/ruby-bio-2.0.1/doc/Tutorial.rd.html:1095: interpeter ==> interpreter
data/ruby-bio-2.0.1/doc/ChangeLog-before-1.3.1:37: splitted ==> split
data/ruby-bio-2.0.1/doc/ChangeLog-before-1.3.1:333: refernces ==> references
data/ruby-bio-2.0.1/doc/ChangeLog-before-1.3.1:2282: rewrited ==> rewrote, rewritten
data/ruby-bio-2.0.1/doc/ChangeLog-before-1.3.1:2287: rewrited ==> rewrote, rewritten
data/ruby-bio-2.0.1/doc/ChangeLog-before-1.3.1:2357: classess ==> classes
data/ruby-bio-2.0.1/doc/ChangeLog-before-1.3.1:2531: rewrited ==> rewrote, rewritten
data/ruby-bio-2.0.1/doc/ChangeLog-before-1.3.1:2542: rewrited ==> rewrote, rewritten
data/ruby-bio-2.0.1/doc/ChangeLog-before-1.3.1:2549: formmatted ==> formatted
data/ruby-bio-2.0.1/doc/ChangeLog-before-1.3.1:2557: publically ==> publicly
data/ruby-bio-2.0.1/doc/ChangeLog-before-1.3.1:2576: ommited ==> omitted
data/ruby-bio-2.0.1/doc/ChangeLog-before-1.3.1:2688: extention ==> extension
data/ruby-bio-2.0.1/doc/ChangeLog-before-1.3.1:2696: rewrited ==> rewrote, rewritten
data/ruby-bio-2.0.1/doc/ChangeLog-before-1.3.1:2719: rewrited ==> rewrote, rewritten
data/ruby-bio-2.0.1/doc/ChangeLog-before-1.3.1:2734: functionallity ==> functionality
data/ruby-bio-2.0.1/doc/ChangeLog-before-1.3.1:2734: rewrited ==> rewrote, rewritten
data/ruby-bio-2.0.1/doc/ChangeLog-before-1.3.1:2785: formmatted ==> formatted
data/ruby-bio-2.0.1/doc/ChangeLog-before-1.3.1:2828: Desing ==> Design
data/ruby-bio-2.0.1/doc/ChangeLog-before-1.3.1:3061: direcotry ==> directory
data/ruby-bio-2.0.1/doc/ChangeLog-before-1.3.1:3149: adviced ==> advised
data/ruby-bio-2.0.1/doc/ChangeLog-before-1.3.1:3167: Sequcne ==> Sequence
data/ruby-bio-2.0.1/doc/ChangeLog-before-1.3.1:3259: opions ==> options
data/ruby-bio-2.0.1/doc/ChangeLog-before-1.3.1:3284: desing ==> design
data/ruby-bio-2.0.1/doc/ChangeLog-before-1.3.1:3326: rewrited ==> rewrote, rewritten
data/ruby-bio-2.0.1/doc/ChangeLog-before-1.3.1:3470: rewrited ==> rewrote, rewritten
data/ruby-bio-2.0.1/doc/ChangeLog-before-1.3.1:3479: rewrited ==> rewrote, rewritten
data/ruby-bio-2.0.1/doc/ChangeLog-before-1.3.1:3498: rewrited ==> rewrote, rewritten
data/ruby-bio-2.0.1/doc/ChangeLog-before-1.3.1:3518: Rewrited ==> Rewrote, rewritten
data/ruby-bio-2.0.1/doc/ChangeLog-before-1.3.1:3718: Rewrited ==> Rewrote, rewritten
data/ruby-bio-2.0.1/doc/ChangeLog-before-1.3.1:3920: rewrited ==> rewrote, rewritten
data/ruby-bio-2.0.1/doc/ChangeLog-before-1.3.1:3943: docuement ==> document
data/ruby-bio-2.0.1/doc/Changes-0.7.rd:235: separeted ==> separated
data/ruby-bio-2.0.1/doc/Changes-0.7.rd:316: formmatted ==> formatted
data/ruby-bio-2.0.1/doc/Changes-0.7.rd:325: formmatted ==> formatted
data/ruby-bio-2.0.1/doc/ChangeLog-before-1.4.2:489: offical ==> official
data/ruby-bio-2.0.1/doc/ChangeLog-before-1.4.2:553: hsa ==> has
data/ruby-bio-2.0.1/doc/ChangeLog-before-1.4.2:747: waring ==> warning
data/ruby-bio-2.0.1/doc/ChangeLog-before-1.4.2:1433: grammer ==> grammar
data/ruby-bio-2.0.1/doc/ChangeLog-before-1.4.2:1436: grammer ==> grammar
data/ruby-bio-2.0.1/doc/ChangeLog-before-1.4.2:1468: bahavior ==> behavior
data/ruby-bio-2.0.1/doc/ChangeLog-before-1.4.2:2104: inital ==> initial
data/ruby-bio-2.0.1/doc/ChangeLog-before-1.4.2:3033: uner ==> under
data/ruby-bio-2.0.1/doc/ChangeLog-before-1.4.2:4175: separete ==> separate
data/ruby-bio-2.0.1/doc/ChangeLog-before-1.4.2:4178: splitted ==> split
data/ruby-bio-2.0.1/doc/ChangeLog-before-1.4.2:4422: splitted ==> split
data/ruby-bio-2.0.1/doc/RELEASE_NOTES-1.4.2.rdoc:20: additon ==> addition
data/ruby-bio-2.0.1/sample/biofetch.rb:107: temporay ==> temporary
data/ruby-bio-2.0.1/sample/biofetch.rb:408: Rewrited ==> Rewrote, rewritten
data/ruby-bio-2.0.1/sample/biofetch.rb:489: informations ==> information
data/ruby-bio-2.0.1/sample/demo_bl2seq_report.rb:161: vaules ==> values
data/ruby-bio-2.0.1/sample/goslim.rb:3: histgram ==> histogram
data/ruby-bio-2.0.1/sample/demo_blast_report.rb:222: vaules ==> values
data/ruby-bio-2.0.1/sample/tdiary.rb:56: detabase ==> database
data/ruby-bio-2.0.1/sample/demo_kegg_genome.rb:24: hsa ==> has
data/ruby-bio-2.0.1/sample/demo_kegg_genome.rb:24: hsa ==> has
data/ruby-bio-2.0.1/sample/demo_kegg_genome.rb:28: hsa ==> has
data/ruby-bio-2.0.1/sample/seqdatabase.ini:37: protcol ==> protocol
data/ruby-bio-2.0.1/sample/seqdatabase.ini:42: protcol ==> protocol
data/ruby-bio-2.0.1/sample/demo_pathway.rb:110: histgram ==> histogram
data/ruby-bio-2.0.1/debian/changelog:194: fileds ==> fields
data/ruby-bio-2.0.1/debian/copyright:14: ist ==> is, it, its, it's, sit, list
data/ruby-bio-2.0.1/.pc/disable_tests_using_chi2.patch/test/unit/bio/sequence/test_common.rb:246: hist ==> heist, his
data/ruby-bio-2.0.1/.pc/disable_tests_using_chi2.patch/test/unit/bio/sequence/test_common.rb:249: hist ==> heist, his
data/ruby-bio-2.0.1/.pc/disable_tests_using_chi2.patch/test/unit/bio/sequence/test_common.rb:261: hist ==> heist, his
data/ruby-bio-2.0.1/.pc/disable_tests_using_chi2.patch/test/unit/bio/sequence/test_common.rb:276: hist ==> heist, his
data/ruby-bio-2.0.1/.pc/disable_tests_using_chi2.patch/test/unit/bio/sequence/test_common.rb:277: hist ==> heist, his
data/ruby-bio-2.0.1/.pc/disable_tests_using_chi2.patch/test/unit/bio/sequence/test_common.rb:278: hist ==> heist, his
data/ruby-bio-2.0.1/.pc/disable_tests_using_chi2.patch/test/unit/bio/sequence/test_common.rb:300: sucess ==> success