data/samtools-1.11/ChangeLog.old:514: inital ==> initial
data/samtools-1.11/ChangeLog.old:666: utilites ==> utilities
data/samtools-1.11/ChangeLog.old:726: overwritting ==> overwriting
data/samtools-1.11/ChangeLog.old:816: FPR ==> FOR, FAR, FPS
data/samtools-1.11/ChangeLog.old:842: constrast ==> contrast
data/samtools-1.11/ChangeLog.old:897: implemeted ==> implemented
data/samtools-1.11/ChangeLog.old:1361: interger ==> integer
data/samtools-1.11/ChangeLog.old:1791: suppres ==> suppress
data/samtools-1.11/ChangeLog.old:2343: addd ==> add
data/samtools-1.11/ChangeLog.old:2376: outputing ==> outputting
data/samtools-1.11/ChangeLog.old:2658: outputing ==> outputting
data/samtools-1.11/bam.h:63: referene ==> reference
data/samtools-1.11/bam.h:80: defautl ==> default
data/samtools-1.11/bam_fastq.c:148: fpr ==> for, far, fps
data/samtools-1.11/bam_fastq.c:773: fpr ==> for, far, fps
data/samtools-1.11/bam_fastq.c:774: fpr ==> for, far, fps
data/samtools-1.11/bam_fastq.c:781: fpr ==> for, far, fps
data/samtools-1.11/bam_fastq.c:781: fpr ==> for, far, fps
data/samtools-1.11/bam_fastq.c:792: fpr ==> for, far, fps
data/samtools-1.11/bam_fastq.c:813: fpr ==> for, far, fps
data/samtools-1.11/bam_fastq.c:839: fpr ==> for, far, fps
data/samtools-1.11/bam_fastq.c:841: fpr ==> for, far, fps
data/samtools-1.11/bam_fastq.c:841: fpr ==> for, far, fps
data/samtools-1.11/bam_fastq.c:843: fpr ==> for, far, fps
data/samtools-1.11/bam_fastq.c:857: fpr ==> for, far, fps
data/samtools-1.11/bam_fastq.c:926: fpr ==> for, far, fps
data/samtools-1.11/bam_fastq.c:926: fpr ==> for, far, fps
data/samtools-1.11/bam_fastq.c:927: fpr ==> for, far, fps
data/samtools-1.11/bam_fastq.c:928: fpr ==> for, far, fps
data/samtools-1.11/bam_fastq.c:940: fpr ==> for, far, fps
data/samtools-1.11/bam_fastq.c:942: fpr ==> for, far, fps
data/samtools-1.11/bam_fastq.c:947: fpr ==> for, far, fps
data/samtools-1.11/bam_fastq.c:948: fpr ==> for, far, fps
data/samtools-1.11/bam_plcmd.c:478: specfied ==> specified
data/samtools-1.11/bam_sort.c:2366: approxiate ==> approximate
data/samtools-1.11/bam_tview.c:127: specfied ==> specified
data/samtools-1.11/bedcov.c:148: specfied ==> specified
data/samtools-1.11/coverage.c:27: simutaneously ==> simultaneously
data/samtools-1.11/coverage.c:210: hist ==> heist, his
data/samtools-1.11/coverage.c:223: hist ==> heist, his
data/samtools-1.11/coverage.c:240: halfs ==> halves
data/samtools-1.11/coverage.c:300: hist ==> heist, his
data/samtools-1.11/coverage.c:547: hist ==> heist, his
data/samtools-1.11/coverage.c:550: hist ==> heist, his
data/samtools-1.11/coverage.c:560: hist ==> heist, his
data/samtools-1.11/coverage.c:567: hist ==> heist, his
data/samtools-1.11/coverage.c:604: hist ==> heist, his
data/samtools-1.11/coverage.c:610: hist ==> heist, his
data/samtools-1.11/coverage.c:620: hist ==> heist, his
data/samtools-1.11/coverage.c:643: hist ==> heist, his
data/samtools-1.11/coverage.c:643: hist ==> heist, his
data/samtools-1.11/sam.h:68: outputing ==> outputting
data/samtools-1.11/sam_view.c:637: specfied ==> specified
data/samtools-1.11/sam_view.c:700: specfied ==> specified
data/samtools-1.11/stats.c:1320: splitted ==> split
data/samtools-1.11/doc/samtools-ampliconstats.1:104: TE ==> THE, BE, WE
data/samtools-1.11/doc/samtools-ampliconstats.1:143: TE ==> THE, BE, WE
data/samtools-1.11/doc/samtools-ampliconstats.1:158: TE ==> THE, BE, WE
data/samtools-1.11/doc/samtools-coverage.1:66: TE ==> THE, BE, WE
data/samtools-1.11/doc/samtools-flags.1:68: TE ==> THE, BE, WE
data/samtools-1.11/doc/samtools-mpileup.1:133: TE ==> THE, BE, WE
data/samtools-1.11/doc/samtools-phase.1:83: LOD ==> LOAD
data/samtools-1.11/doc/samtools-split.1:91: TE ==> THE, BE, WE
data/samtools-1.11/doc/samtools-stats.1:89: TE ==> THE, BE, WE
data/samtools-1.11/doc/samtools.1:347: TE ==> THE, BE, WE
data/samtools-1.11/doc/samtools.1:808: TE ==> THE, BE, WE
data/samtools-1.11/doc/samtools.1:957: chracters ==> characters
data/samtools-1.11/misc/plot-ampliconstats:835: te ==> the, be, we
data/samtools-1.11/misc/plot-ampliconstats:836: te ==> the, be, we
data/samtools-1.11/misc/plot-ampliconstats:883: te ==> the, be, we
data/samtools-1.11/misc/plot-ampliconstats:884: te ==> the, be, we
data/samtools-1.11/misc/plot-ampliconstats:938: te ==> the, be, we
data/samtools-1.11/misc/plot-ampliconstats:939: te ==> the, be, we
data/samtools-1.11/misc/plot-ampliconstats:988: te ==> the, be, we
data/samtools-1.11/misc/plot-ampliconstats:989: te ==> the, be, we
data/samtools-1.11/misc/plot-ampliconstats:1052: te ==> the, be, we
data/samtools-1.11/misc/plot-ampliconstats:1053: te ==> the, be, we
data/samtools-1.11/misc/samtools.pl:324: formated ==> formatted
data/samtools-1.11/test/test.pl:76: nNumber ==> number
data/samtools-1.11/test/test.pl:247: tthe ==> the
data/samtools-1.11/test/test.pl:263: tthe ==> the
data/samtools-1.11/test/test.pl:298: tthe ==> the
data/samtools-1.11/test/test.pl:328: tthe ==> the
data/samtools-1.11/test/test.pl:389: tthe ==> the
data/samtools-1.11/test/test.pl:1092: assocated ==> associated
data/samtools-1.11/test/test.pl:1742: referenes ==> references
data/samtools-1.11/test/test.pl:2171: indicies ==> indices
data/samtools-1.11/test/test.pl:2755: ba ==> by, be
data/samtools-1.11/test/bam2fq/13.fq.expected:1: ba ==> by, be
data/samtools-1.11/test/dat/bam2fq.001.sam:29: ba ==> by, be
data/samtools-1.11/test/dat/bam2fq.002.sam:29: ba ==> by, be
data/samtools-1.11/test/dat/bam2fq.003.sam:29: ba ==> by, be
data/samtools-1.11/test/dat/bam2fq.004.sam:29: ba ==> by, be
data/samtools-1.11/test/dat/bam2fq.005.sam:29: ba ==> by, be
data/samtools-1.11/test/dat/bam2fq.010.sam:29: ba ==> by, be
data/samtools-1.11/test/dat/bam2fq.013.sam:24: ba ==> by, be
data/samtools-1.11/test/dat/large_chrom.sam:30: ba ==> by, be
data/samtools-1.11/test/dat/mpileup.1.sam:474: BA ==> BY, BE
data/samtools-1.11/test/dat/mpileup.1.sam:577: BA ==> BY, BE
data/samtools-1.11/test/dat/mpileup.1.sam:612: EGE ==> EDGE
data/samtools-1.11/test/dat/mpileup.1.sam:638: DAA ==> DATA
data/samtools-1.11/test/dat/mpileup.1.sam:670: BA ==> BY, BE
data/samtools-1.11/test/dat/mpileup.1.sam:674: IDAE ==> IDEA
data/samtools-1.11/test/dat/mpileup.1.sam:678: BA ==> BY, BE
data/samtools-1.11/test/dat/mpileup.1.sam:702: BA ==> BY, BE
data/samtools-1.11/test/dat/mpileup.1.sam:703: BA ==> BY, BE
data/samtools-1.11/test/dat/mpileup.1.sam:708: AFE ==> SAFE
data/samtools-1.11/test/dat/mpileup.1.sam:733: BA ==> BY, BE
data/samtools-1.11/test/dat/mpileup.1.sam:808: BA ==> BY, BE
data/samtools-1.11/test/dat/mpileup.1.sam:837: BA ==> BY, BE
data/samtools-1.11/test/dat/mpileup.1.sam:872: HGE ==> HE
data/samtools-1.11/test/dat/mpileup.1.sam:955: BA ==> BY, BE
data/samtools-1.11/test/dat/mpileup.1.sam:978: BA ==> BY, BE
data/samtools-1.11/test/dat/mpileup.1.sam:1013: LIK ==> LIKE, LICK, LINK
data/samtools-1.11/test/dat/mpileup.2.sam:18: fO ==> of, for
data/samtools-1.11/test/dat/mpileup.2.sam:38: HAA ==> HAS
data/samtools-1.11/test/dat/mpileup.2.sam:45: BA ==> BY, BE
data/samtools-1.11/test/dat/mpileup.2.sam:50: BA ==> BY, BE
data/samtools-1.11/test/dat/mpileup.2.sam:62: BA ==> BY, BE
data/samtools-1.11/test/dat/mpileup.2.sam:215: AFE ==> SAFE
data/samtools-1.11/test/dat/mpileup.3.sam:27: BA ==> BY, BE
data/samtools-1.11/test/dat/mpileup.3.sam:40: BA ==> BY, BE
data/samtools-1.11/test/dat/mpileup.3.sam:161: BA ==> BY, BE
data/samtools-1.11/test/dat/mpileup.3.sam:206: HDA ==> HAD
data/samtools-1.11/test/dat/mpileup.3.sam:225: BA ==> BY, BE
data/samtools-1.11/test/dat/view.001.sam:30: ba ==> by, be
data/samtools-1.11/test/dat/view.004.expected.sam:31: ba ==> by, be
data/samtools-1.11/test/large_pos/longref.sam:3: BA ==> BY, BE
data/samtools-1.11/test/large_pos/longref.sam:12: BA ==> BY, BE
data/samtools-1.11/test/large_pos/longref.sam:23: DAA ==> DATA
data/samtools-1.11/test/large_pos/longref.sam:35: BA ==> BY, BE
data/samtools-1.11/test/large_pos/longref.sam:52: BA ==> BY, BE
data/samtools-1.11/test/large_pos/longref.sam:56: BA ==> BY, BE
data/samtools-1.11/test/large_pos/longref.sam:72: BA ==> BY, BE
data/samtools-1.11/test/large_pos/longref.sam:73: BA ==> BY, BE
data/samtools-1.11/test/large_pos/longref.sam:82: BA ==> BY, BE
data/samtools-1.11/test/large_pos/longref2.sam:3: BA ==> BY, BE
data/samtools-1.11/test/large_pos/longref2.sam:5: BA ==> BY, BE
data/samtools-1.11/test/large_pos/longref2.sam:6: BA ==> BY, BE
data/samtools-1.11/test/large_pos/longref2.sam:15: DAA ==> DATA
data/samtools-1.11/test/large_pos/longref2.sam:20: BA ==> BY, BE
data/samtools-1.11/test/large_pos/longref2.sam:28: BA ==> BY, BE
data/samtools-1.11/test/large_pos/longref2.sam:30: BA ==> BY, BE
data/samtools-1.11/test/large_pos/longref2.sam:33: BA ==> BY, BE
data/samtools-1.11/test/large_pos/longref2.sam:39: DAA ==> DATA
data/samtools-1.11/test/large_pos/longref_idx.expected.sam:14: BA ==> BY, BE
data/samtools-1.11/test/large_pos/longref_idx.expected.sam:18: BA ==> BY, BE
data/samtools-1.11/test/large_pos/longref_name.sam:4: BA ==> BY, BE
data/samtools-1.11/test/large_pos/longref_name.sam:12: BA ==> BY, BE
data/samtools-1.11/test/large_pos/longref_name.sam:19: BA ==> BY, BE
data/samtools-1.11/test/large_pos/longref_name.sam:30: BA ==> BY, BE
data/samtools-1.11/test/large_pos/longref_name.sam:33: BA ==> BY, BE
data/samtools-1.11/test/large_pos/longref_name.sam:44: BA ==> BY, BE
data/samtools-1.11/test/large_pos/longref_name.sam:54: BA ==> BY, BE
data/samtools-1.11/test/large_pos/longref_name.sam:59: BA ==> BY, BE
data/samtools-1.11/test/large_pos/longref_name.sam:79: DAA ==> DATA
data/samtools-1.11/test/large_pos/merge.expected.sam:3: BA ==> BY, BE
data/samtools-1.11/test/large_pos/merge.expected.sam:12: BA ==> BY, BE
data/samtools-1.11/test/large_pos/merge.expected.sam:23: DAA ==> DATA
data/samtools-1.11/test/large_pos/merge.expected.sam:35: BA ==> BY, BE
data/samtools-1.11/test/large_pos/merge.expected.sam:48: BA ==> BY, BE
data/samtools-1.11/test/large_pos/merge.expected.sam:50: BA ==> BY, BE
data/samtools-1.11/test/large_pos/merge.expected.sam:51: BA ==> BY, BE
data/samtools-1.11/test/large_pos/merge.expected.sam:60: DAA ==> DATA
data/samtools-1.11/test/large_pos/merge.expected.sam:65: BA ==> BY, BE
data/samtools-1.11/test/large_pos/merge.expected.sam:73: BA ==> BY, BE
data/samtools-1.11/test/large_pos/merge.expected.sam:75: BA ==> BY, BE
data/samtools-1.11/test/large_pos/merge.expected.sam:78: BA ==> BY, BE
data/samtools-1.11/test/large_pos/merge.expected.sam:84: DAA ==> DATA
data/samtools-1.11/test/large_pos/merge.expected.sam:138: BA ==> BY, BE
data/samtools-1.11/test/large_pos/merge.expected.sam:142: BA ==> BY, BE
data/samtools-1.11/test/large_pos/merge.expected.sam:158: BA ==> BY, BE
data/samtools-1.11/test/large_pos/merge.expected.sam:159: BA ==> BY, BE
data/samtools-1.11/test/large_pos/merge.expected.sam:168: BA ==> BY, BE
data/samtools-1.11/test/mpileup/ce#5b.sam:6: BA ==> BY, BE
data/samtools-1.11/test/mpileup/ce#5b.sam:7: BA ==> BY, BE
data/samtools-1.11/test/mpileup/ce#5b.sam:8: BA ==> BY, BE
data/samtools-1.11/test/mpileup/ce#5b.sam:9: BA ==> BY, BE
data/samtools-1.11/test/mpileup/ce#5b.sam:10: BA ==> BY, BE
data/samtools-1.11/test/mpileup/regression.sh:88: regresion ==> regression
data/samtools-1.11/test/mpileup/expected/13.out:49: LIK ==> LIKE, LICK, LINK
data/samtools-1.11/test/mpileup/expected/13.out:698: HDA ==> HAD
data/samtools-1.11/test/mpileup/expected/13.out:743: HGE ==> HE
data/samtools-1.11/test/mpileup/expected/13.out:1337: HGE ==> HE
data/samtools-1.11/test/mpileup/expected/13.out:1410: IIF ==> IF
data/samtools-1.11/test/mpileup/expected/13.out:1861: EDE ==> EDGE
data/samtools-1.11/test/mpileup/expected/13.out:2021: BA ==> BY, BE
data/samtools-1.11/test/mpileup/expected/13.out:2098: EDE ==> EDGE
data/samtools-1.11/test/mpileup/expected/13.out:2209: IIF ==> IF
data/samtools-1.11/test/mpileup/expected/13.out:3885: IIF ==> IF
data/samtools-1.11/test/mpileup/expected/13.out:3893: HDA ==> HAD
data/samtools-1.11/test/mpileup/expected/14.out:49: LIK ==> LIKE, LICK, LINK
data/samtools-1.11/test/mpileup/expected/14.out:586: HGE ==> HE
data/samtools-1.11/test/mpileup/expected/14.out:698: HDA ==> HAD
data/samtools-1.11/test/mpileup/expected/14.out:743: HGE ==> HE
data/samtools-1.11/test/mpileup/expected/14.out:858: IIF ==> IF
data/samtools-1.11/test/mpileup/expected/14.out:1147: LIK ==> LIKE, LICK, LINK
data/samtools-1.11/test/mpileup/expected/14.out:1265: EDIGE ==> EDGE
data/samtools-1.11/test/mpileup/expected/14.out:1337: HGE ==> HE
data/samtools-1.11/test/mpileup/expected/14.out:1410: IIF ==> IF
data/samtools-1.11/test/mpileup/expected/14.out:1435: BA ==> BY, BE
data/samtools-1.11/test/mpileup/expected/14.out:1756: HEL ==> HELP, HELL, HEAL
data/samtools-1.11/test/mpileup/expected/14.out:1861: EDE ==> EDGE
data/samtools-1.11/test/mpileup/expected/14.out:2014: BA ==> BY, BE
data/samtools-1.11/test/mpileup/expected/14.out:2021: BA ==> BY, BE
data/samtools-1.11/test/mpileup/expected/14.out:2098: EDE ==> EDGE
data/samtools-1.11/test/mpileup/expected/14.out:2100: BA ==> BY, BE
data/samtools-1.11/test/mpileup/expected/14.out:2209: IIF ==> IF
data/samtools-1.11/test/mpileup/expected/14.out:2386: IIF ==> IF
data/samtools-1.11/test/mpileup/expected/14.out:2533: EGE ==> EDGE
data/samtools-1.11/test/mpileup/expected/14.out:2621: HEL ==> HELP, HELL, HEAL
data/samtools-1.11/test/mpileup/expected/14.out:2727: BA ==> BY, BE
data/samtools-1.11/test/mpileup/expected/14.out:2942: ACI ==> ACPI
data/samtools-1.11/test/mpileup/expected/14.out:3047: BA ==> BY, BE
data/samtools-1.11/test/mpileup/expected/14.out:3657: ALHA ==> ALPHA
data/samtools-1.11/test/mpileup/expected/14.out:3885: IIF ==> IF
data/samtools-1.11/test/mpileup/expected/14.out:3893: HDA ==> HAD
data/samtools-1.11/test/mpileup/expected/15.out:49: LIK ==> LIKE, LICK, LINK
data/samtools-1.11/test/mpileup/expected/15.out:586: HGE ==> HE
data/samtools-1.11/test/mpileup/expected/15.out:698: HDA ==> HAD
data/samtools-1.11/test/mpileup/expected/15.out:743: HGE ==> HE
data/samtools-1.11/test/mpileup/expected/15.out:858: IIF ==> IF
data/samtools-1.11/test/mpileup/expected/15.out:1147: LIK ==> LIKE, LICK, LINK
data/samtools-1.11/test/mpileup/expected/15.out:1265: EDIGE ==> EDGE
data/samtools-1.11/test/mpileup/expected/15.out:1337: HGE ==> HE
data/samtools-1.11/test/mpileup/expected/15.out:1410: IIF ==> IF
data/samtools-1.11/test/mpileup/expected/15.out:1435: BA ==> BY, BE
data/samtools-1.11/test/mpileup/expected/15.out:1756: HEL ==> HELP, HELL, HEAL
data/samtools-1.11/test/mpileup/expected/15.out:1861: EDE ==> EDGE
data/samtools-1.11/test/mpileup/expected/15.out:2014: BA ==> BY, BE
data/samtools-1.11/test/mpileup/expected/15.out:2021: BA ==> BY, BE
data/samtools-1.11/test/mpileup/expected/15.out:2098: EDE ==> EDGE
data/samtools-1.11/test/mpileup/expected/15.out:2100: BA ==> BY, BE
data/samtools-1.11/test/mpileup/expected/15.out:2209: IIF ==> IF
data/samtools-1.11/test/mpileup/expected/15.out:2386: IIF ==> IF
data/samtools-1.11/test/mpileup/expected/15.out:2533: EGE ==> EDGE
data/samtools-1.11/test/mpileup/expected/15.out:2621: HEL ==> HELP, HELL, HEAL
data/samtools-1.11/test/mpileup/expected/15.out:2727: BA ==> BY, BE
data/samtools-1.11/test/mpileup/expected/15.out:2942: ACI ==> ACPI
data/samtools-1.11/test/mpileup/expected/15.out:3047: BA ==> BY, BE
data/samtools-1.11/test/mpileup/expected/15.out:3657: ALHA ==> ALPHA
data/samtools-1.11/test/mpileup/expected/15.out:3885: IIF ==> IF
data/samtools-1.11/test/mpileup/expected/15.out:3893: HDA ==> HAD
data/samtools-1.11/test/mpileup/expected/16.out:26: IIF ==> IF
data/samtools-1.11/test/mpileup/expected/16.out:49: LIK ==> LIKE, LICK, LINK
data/samtools-1.11/test/mpileup/expected/16.out:698: HDA ==> HAD
data/samtools-1.11/test/mpileup/expected/16.out:743: HGE ==> HE
data/samtools-1.11/test/mpileup/expected/16.out:1337: HGE ==> HE
data/samtools-1.11/test/mpileup/expected/16.out:1410: IIF ==> IF
data/samtools-1.11/test/mpileup/expected/16.out:1861: EDE ==> EDGE
data/samtools-1.11/test/mpileup/expected/16.out:2021: BA ==> BY, BE
data/samtools-1.11/test/mpileup/expected/16.out:2080: EGE ==> EDGE
data/samtools-1.11/test/mpileup/expected/16.out:2098: EDE ==> EDGE
data/samtools-1.11/test/mpileup/expected/16.out:2209: IIF ==> IF
data/samtools-1.11/test/mpileup/expected/16.out:3885: IIF ==> IF
data/samtools-1.11/test/mpileup/expected/16.out:3893: HDA ==> HAD
data/samtools-1.11/test/mpileup/expected/17.out:49: LIK ==> LIKE, LICK, LINK
data/samtools-1.11/test/mpileup/expected/17.out:698: HDA ==> HAD
data/samtools-1.11/test/mpileup/expected/17.out:743: HGE ==> HE
data/samtools-1.11/test/mpileup/expected/17.out:1337: HGE ==> HE
data/samtools-1.11/test/mpileup/expected/17.out:1410: IIF ==> IF
data/samtools-1.11/test/mpileup/expected/17.out:1861: EDE ==> EDGE
data/samtools-1.11/test/mpileup/expected/17.out:2021: BA ==> BY, BE
data/samtools-1.11/test/mpileup/expected/17.out:2098: EDE ==> EDGE
data/samtools-1.11/test/mpileup/expected/17.out:2209: IIF ==> IF
data/samtools-1.11/test/mpileup/expected/17.out:3885: IIF ==> IF
data/samtools-1.11/test/mpileup/expected/17.out:3893: HDA ==> HAD
data/samtools-1.11/test/mpileup/expected/18.out:49: LIK ==> LIKE, LICK, LINK
data/samtools-1.11/test/mpileup/expected/18.out:698: HDA ==> HAD
data/samtools-1.11/test/mpileup/expected/18.out:743: HGE ==> HE
data/samtools-1.11/test/mpileup/expected/18.out:1337: HGE ==> HE
data/samtools-1.11/test/mpileup/expected/18.out:1410: IIF ==> IF
data/samtools-1.11/test/mpileup/expected/18.out:1861: EDE ==> EDGE
data/samtools-1.11/test/mpileup/expected/18.out:2021: BA ==> BY, BE
data/samtools-1.11/test/mpileup/expected/18.out:2098: EDE ==> EDGE
data/samtools-1.11/test/mpileup/expected/18.out:2209: IIF ==> IF
data/samtools-1.11/test/mpileup/expected/18.out:3885: IIF ==> IF
data/samtools-1.11/test/mpileup/expected/18.out:3893: HDA ==> HAD
data/samtools-1.11/test/mpileup/expected/19.out:26: IIF ==> IF
data/samtools-1.11/test/mpileup/expected/19.out:49: LIK ==> LIKE, LICK, LINK
data/samtools-1.11/test/mpileup/expected/19.out:698: HDA ==> HAD
data/samtools-1.11/test/mpileup/expected/19.out:743: HGE ==> HE
data/samtools-1.11/test/mpileup/expected/19.out:1337: HGE ==> HE
data/samtools-1.11/test/mpileup/expected/19.out:1410: IIF ==> IF
data/samtools-1.11/test/mpileup/expected/19.out:1861: EDE ==> EDGE
data/samtools-1.11/test/mpileup/expected/19.out:2021: BA ==> BY, BE
data/samtools-1.11/test/mpileup/expected/19.out:2080: EGE ==> EDGE
data/samtools-1.11/test/mpileup/expected/19.out:2098: EDE ==> EDGE
data/samtools-1.11/test/mpileup/expected/19.out:2209: IIF ==> IF
data/samtools-1.11/test/mpileup/expected/19.out:3885: IIF ==> IF
data/samtools-1.11/test/mpileup/expected/19.out:3893: HDA ==> HAD
data/samtools-1.11/test/mpileup/expected/21.out:26: IIF ==> IF
data/samtools-1.11/test/mpileup/expected/21.out:49: LIK ==> LIKE, LICK, LINK
data/samtools-1.11/test/mpileup/expected/21.out:698: HDA ==> HAD
data/samtools-1.11/test/mpileup/expected/21.out:743: HGE ==> HE
data/samtools-1.11/test/mpileup/expected/21.out:1337: HGE ==> HE
data/samtools-1.11/test/mpileup/expected/21.out:1410: IIF ==> IF
data/samtools-1.11/test/mpileup/expected/21.out:1861: EDE ==> EDGE
data/samtools-1.11/test/mpileup/expected/21.out:2021: BA ==> BY, BE
data/samtools-1.11/test/mpileup/expected/21.out:2080: EGE ==> EDGE
data/samtools-1.11/test/mpileup/expected/21.out:2098: EDE ==> EDGE
data/samtools-1.11/test/mpileup/expected/21.out:2209: IIF ==> IF
data/samtools-1.11/test/mpileup/expected/21.out:3885: IIF ==> IF
data/samtools-1.11/test/mpileup/expected/21.out:3893: HDA ==> HAD
data/samtools-1.11/test/mpileup/expected/22.out:26: IIF ==> IF
data/samtools-1.11/test/mpileup/expected/22.out:49: LIK ==> LIKE, LICK, LINK
data/samtools-1.11/test/mpileup/expected/22.out:698: HDA ==> HAD
data/samtools-1.11/test/mpileup/expected/22.out:743: HGE ==> HE
data/samtools-1.11/test/mpileup/expected/22.out:1337: HGE ==> HE
data/samtools-1.11/test/mpileup/expected/22.out:1410: IIF ==> IF
data/samtools-1.11/test/mpileup/expected/22.out:1861: EDE ==> EDGE
data/samtools-1.11/test/mpileup/expected/22.out:2021: BA ==> BY, BE
data/samtools-1.11/test/mpileup/expected/22.out:2080: EGE ==> EDGE
data/samtools-1.11/test/mpileup/expected/22.out:2098: EDE ==> EDGE
data/samtools-1.11/test/mpileup/expected/22.out:2209: IIF ==> IF
data/samtools-1.11/test/mpileup/expected/22.out:3885: IIF ==> IF
data/samtools-1.11/test/mpileup/expected/22.out:3893: HDA ==> HAD
data/samtools-1.11/test/mpileup/expected/28.out:49: LIK ==> LIKE, LICK, LINK
data/samtools-1.11/test/mpileup/expected/28.out:698: HDA ==> HAD
data/samtools-1.11/test/mpileup/expected/28.out:743: HGE ==> HE
data/samtools-1.11/test/mpileup/expected/28.out:1337: HGE ==> HE
data/samtools-1.11/test/mpileup/expected/28.out:1410: IIF ==> IF
data/samtools-1.11/test/mpileup/expected/28.out:1861: EDE ==> EDGE
data/samtools-1.11/test/mpileup/expected/28.out:1881: BA ==> BY, BE
data/samtools-1.11/test/mpileup/expected/28.out:2021: BA ==> BY, BE
data/samtools-1.11/test/mpileup/expected/28.out:2098: EDE ==> EDGE
data/samtools-1.11/test/mpileup/expected/28.out:2456: IIF ==> IF
data/samtools-1.11/test/mpileup/expected/28.out:3885: IIF ==> IF
data/samtools-1.11/test/mpileup/expected/28.out:3893: HDA ==> HAD
data/samtools-1.11/test/mpileup/expected/35.out:1094: HDA ==> HAD
data/samtools-1.11/test/mpileup/expected/35.out:3070: BA ==> BY, BE
data/samtools-1.11/test/mpileup/expected/35.out:3077: BA ==> BY, BE
data/samtools-1.11/test/mpileup/expected/37.out:49: LIK ==> LIKE, LICK, LINK
data/samtools-1.11/test/mpileup/expected/37.out:698: HDA ==> HAD
data/samtools-1.11/test/mpileup/expected/37.out:743: HGE ==> HE
data/samtools-1.11/test/mpileup/expected/37.out:1337: HGE ==> HE
data/samtools-1.11/test/mpileup/expected/37.out:1410: IIF ==> IF
data/samtools-1.11/test/mpileup/expected/37.out:1861: EDE ==> EDGE
data/samtools-1.11/test/mpileup/expected/37.out:2021: BA ==> BY, BE
data/samtools-1.11/test/mpileup/expected/37.out:2098: EDE ==> EDGE
data/samtools-1.11/test/mpileup/expected/37.out:2209: IIF ==> IF
data/samtools-1.11/test/mpileup/expected/37.out:3885: IIF ==> IF
data/samtools-1.11/test/mpileup/expected/37.out:3893: HDA ==> HAD
data/samtools-1.11/test/mpileup/expected/43.out:2146: BA ==> BY, BE
data/samtools-1.11/test/mpileup/expected/43.out:2578: IIF ==> IF
data/samtools-1.11/test/mpileup/expected/43.out:2653: BA ==> BY, BE
data/samtools-1.11/test/mpileup/expected/43.out:3027: FIED ==> FIELD
data/samtools-1.11/test/mpileup/expected/44.out:2146: BA ==> BY, BE
data/samtools-1.11/test/mpileup/expected/44.out:2578: IIF ==> IF
data/samtools-1.11/test/mpileup/expected/44.out:2653: BA ==> BY, BE
data/samtools-1.11/test/mpileup/expected/44.out:3027: FIED ==> FIELD
data/samtools-1.11/test/mpileup/expected/45.out:49: LIK ==> LIKE, LICK, LINK
data/samtools-1.11/test/mpileup/expected/45.out:316: LIK ==> LIKE, LICK, LINK
data/samtools-1.11/test/mpileup/expected/45.out:796: HGE ==> HE
data/samtools-1.11/test/mpileup/expected/45.out:991: BA ==> BY, BE
data/samtools-1.11/test/mpileup/expected/45.out:1678: BA ==> BY, BE
data/samtools-1.11/test/mpileup/expected/45.out:1845: HAA ==> HAS
data/samtools-1.11/test/mpileup/expected/45.out:2355: LIK ==> LIKE, LICK, LINK
data/samtools-1.11/test/mpileup/expected/45.out:2575: IIF ==> IF
data/samtools-1.11/test/mpileup/expected/45.out:2816: IIF ==> IF
data/samtools-1.11/test/mpileup/expected/45.out:2923: HGE ==> HE
data/samtools-1.11/test/mpileup/expected/45.out:2963: DAA ==> DATA
data/samtools-1.11/test/mpileup/expected/45.out:3578: BA ==> BY, BE
data/samtools-1.11/test/mpileup/expected/45.out:3860: BA ==> BY, BE
data/samtools-1.11/test/mpileup/expected/45.out:4070: BA ==> BY, BE
data/samtools-1.11/test/mpileup/expected/46.out:49: LIK ==> LIKE, LICK, LINK
data/samtools-1.11/test/mpileup/expected/46.out:316: LIK ==> LIKE, LICK, LINK
data/samtools-1.11/test/mpileup/expected/46.out:796: HGE ==> HE
data/samtools-1.11/test/mpileup/expected/46.out:991: BA ==> BY, BE
data/samtools-1.11/test/mpileup/expected/46.out:1678: BA ==> BY, BE
data/samtools-1.11/test/mpileup/expected/46.out:1845: HAA ==> HAS
data/samtools-1.11/test/mpileup/expected/46.out:2355: LIK ==> LIKE, LICK, LINK
data/samtools-1.11/test/mpileup/expected/46.out:2575: IIF ==> IF
data/samtools-1.11/test/mpileup/expected/46.out:2816: IIF ==> IF
data/samtools-1.11/test/mpileup/expected/46.out:2923: HGE ==> HE
data/samtools-1.11/test/mpileup/expected/46.out:2963: DAA ==> DATA
data/samtools-1.11/test/mpileup/expected/46.out:3578: BA ==> BY, BE
data/samtools-1.11/test/mpileup/expected/46.out:3860: BA ==> BY, BE
data/samtools-1.11/test/mpileup/expected/46.out:4070: BA ==> BY, BE
data/samtools-1.11/test/mpileup/expected/76.out:26: IIF ==> IF
data/samtools-1.11/test/mpileup/expected/76.out:49: LIK ==> LIKE, LICK, LINK
data/samtools-1.11/test/mpileup/expected/76.out:698: HDA ==> HAD
data/samtools-1.11/test/mpileup/expected/76.out:743: HGE ==> HE
data/samtools-1.11/test/mpileup/expected/76.out:1337: HGE ==> HE
data/samtools-1.11/test/mpileup/expected/76.out:1410: IIF ==> IF
data/samtools-1.11/test/mpileup/expected/76.out:1861: EDE ==> EDGE
data/samtools-1.11/test/mpileup/expected/76.out:1881: BA ==> BY, BE
data/samtools-1.11/test/mpileup/expected/76.out:2021: BA ==> BY, BE
data/samtools-1.11/test/mpileup/expected/76.out:2080: EGE ==> EDGE
data/samtools-1.11/test/mpileup/expected/76.out:2098: EDE ==> EDGE
data/samtools-1.11/test/mpileup/expected/76.out:2456: IIF ==> IF
data/samtools-1.11/test/mpileup/expected/76.out:3885: IIF ==> IF
data/samtools-1.11/test/mpileup/expected/76.out:3893: HDA ==> HAD
data/samtools-1.11/test/mpileup/expected/77.out:26: IIF ==> IF
data/samtools-1.11/test/mpileup/expected/77.out:49: LIK ==> LIKE, LICK, LINK
data/samtools-1.11/test/mpileup/expected/77.out:698: HDA ==> HAD
data/samtools-1.11/test/mpileup/expected/77.out:743: HGE ==> HE
data/samtools-1.11/test/mpileup/expected/77.out:1337: HGE ==> HE
data/samtools-1.11/test/mpileup/expected/77.out:1410: IIF ==> IF
data/samtools-1.11/test/mpileup/expected/77.out:1861: EDE ==> EDGE
data/samtools-1.11/test/mpileup/expected/77.out:1881: BA ==> BY, BE
data/samtools-1.11/test/mpileup/expected/77.out:2021: BA ==> BY, BE
data/samtools-1.11/test/mpileup/expected/77.out:2080: EGE ==> EDGE
data/samtools-1.11/test/mpileup/expected/77.out:2098: EDE ==> EDGE
data/samtools-1.11/test/mpileup/expected/77.out:2456: IIF ==> IF
data/samtools-1.11/test/mpileup/expected/77.out:3885: IIF ==> IF
data/samtools-1.11/test/mpileup/expected/77.out:3893: HDA ==> HAD
data/samtools-1.11/test/mpileup/expected/78.out:49: LIK ==> LIKE, LICK, LINK
data/samtools-1.11/test/mpileup/expected/78.out:698: HDA ==> HAD
data/samtools-1.11/test/mpileup/expected/78.out:743: HGE ==> HE
data/samtools-1.11/test/mpileup/expected/78.out:1337: HGE ==> HE
data/samtools-1.11/test/mpileup/expected/78.out:1410: IIF ==> IF
data/samtools-1.11/test/mpileup/expected/78.out:1861: EDE ==> EDGE
data/samtools-1.11/test/mpileup/expected/78.out:2021: BA ==> BY, BE
data/samtools-1.11/test/mpileup/expected/78.out:2098: EDE ==> EDGE
data/samtools-1.11/test/mpileup/expected/78.out:2209: IIF ==> IF
data/samtools-1.11/test/mpileup/expected/78.out:3521: Fo ==> Of, for
data/samtools-1.11/test/mpileup/expected/78.out:3885: IIF ==> IF
data/samtools-1.11/test/mpileup/expected/78.out:3893: HDA ==> HAD
data/samtools-1.11/test/mpileup/expected/a0.out:49: LIK ==> LIKE, LICK, LINK
data/samtools-1.11/test/mpileup/expected/a0.out:56: LIK ==> LIKE, LICK, LINK
data/samtools-1.11/test/mpileup/expected/a0.out:978: LIK ==> LIKE, LICK, LINK
data/samtools-1.11/test/mpileup/expected/a0.out:1375: LIK ==> LIKE, LICK, LINK
data/samtools-1.11/test/reheader/1_view1.sam.expected:30: ba ==> by, be
data/samtools-1.11/test/reheader/2_view1.sam.expected:30: ba ==> by, be
data/samtools-1.11/test/reheader/3_view1.sam.expected:30: ba ==> by, be
data/samtools-1.11/test/reheader/4_view1.sam.expected:31: ba ==> by, be
data/samtools-1.11/test/reheader/5_view1.sam.expected:31: ba ==> by, be
data/samtools-1.11/test/split/split.expected.grp1.sam:27: ba ==> by, be
data/samtools-1.11/test/split/split.sam:29: ba ==> by, be
data/samtools-1.11/test/stat/11_target.sam:34: ba ==> by, be
data/samtools-1.11/test/stat/13_barcodes_fail_bc_length.sam:461: ADDD ==> ADD
data/samtools-1.11/test/stat/13_barcodes_fail_bc_length.sam:845: BA ==> BY, BE
data/samtools-1.11/test/stat/13_barcodes_fail_bc_length.sam:921: BA ==> BY, BE
data/samtools-1.11/test/stat/13_barcodes_fail_bc_length.sam:1143: BA ==> BY, BE
data/samtools-1.11/test/stat/13_barcodes_fail_bc_length.sam:1161: ADDD ==> ADD
data/samtools-1.11/test/stat/13_barcodes_fail_bc_length.sam:1304: BA ==> BY, BE
data/samtools-1.11/test/stat/13_barcodes_fail_bc_length.sam:1953: BA ==> BY, BE
data/samtools-1.11/test/stat/13_barcodes_fail_bc_length.sam:2579: BA ==> BY, BE
data/samtools-1.11/test/stat/13_barcodes_fail_hyphen.sam:461: ADDD ==> ADD
data/samtools-1.11/test/stat/13_barcodes_fail_hyphen.sam:845: BA ==> BY, BE
data/samtools-1.11/test/stat/13_barcodes_fail_hyphen.sam:921: BA ==> BY, BE
data/samtools-1.11/test/stat/13_barcodes_fail_hyphen.sam:1143: BA ==> BY, BE
data/samtools-1.11/test/stat/13_barcodes_fail_hyphen.sam:1161: ADDD ==> ADD
data/samtools-1.11/test/stat/13_barcodes_fail_hyphen.sam:1304: BA ==> BY, BE
data/samtools-1.11/test/stat/13_barcodes_fail_hyphen.sam:1953: BA ==> BY, BE
data/samtools-1.11/test/stat/13_barcodes_fail_hyphen.sam:2579: BA ==> BY, BE
data/samtools-1.11/test/stat/13_barcodes_fail_qt_length.sam:461: ADDD ==> ADD
data/samtools-1.11/test/stat/13_barcodes_fail_qt_length.sam:845: BA ==> BY, BE
data/samtools-1.11/test/stat/13_barcodes_fail_qt_length.sam:921: BA ==> BY, BE
data/samtools-1.11/test/stat/13_barcodes_fail_qt_length.sam:1143: BA ==> BY, BE
data/samtools-1.11/test/stat/13_barcodes_fail_qt_length.sam:1161: ADDD ==> ADD
data/samtools-1.11/test/stat/13_barcodes_fail_qt_length.sam:1304: BA ==> BY, BE
data/samtools-1.11/test/stat/13_barcodes_fail_qt_length.sam:1953: BA ==> BY, BE
data/samtools-1.11/test/stat/13_barcodes_fail_qt_length.sam:2579: BA ==> BY, BE
data/samtools-1.11/test/stat/13_barcodes_ok.sam:461: ADDD ==> ADD
data/samtools-1.11/test/stat/13_barcodes_ok.sam:845: BA ==> BY, BE
data/samtools-1.11/test/stat/13_barcodes_ok.sam:921: BA ==> BY, BE
data/samtools-1.11/test/stat/13_barcodes_ok.sam:1143: BA ==> BY, BE
data/samtools-1.11/test/stat/13_barcodes_ok.sam:1161: ADDD ==> ADD
data/samtools-1.11/test/stat/13_barcodes_ok.sam:1304: BA ==> BY, BE
data/samtools-1.11/test/stat/13_barcodes_ok.sam:1953: BA ==> BY, BE
data/samtools-1.11/test/stat/13_barcodes_ok.sam:2579: BA ==> BY, BE
data/samtools-1.11/test/stat/13_barcodes_ok_ox_bz.sam:281: BA ==> BY, BE
data/samtools-1.11/test/stat/13_barcodes_ok_ox_bz.sam:461: ADDD ==> ADD
data/samtools-1.11/test/stat/13_barcodes_ok_ox_bz.sam:845: BA ==> BY, BE
data/samtools-1.11/test/stat/13_barcodes_ok_ox_bz.sam:845: BA ==> BY, BE
data/samtools-1.11/test/stat/13_barcodes_ok_ox_bz.sam:921: BA ==> BY, BE
data/samtools-1.11/test/stat/13_barcodes_ok_ox_bz.sam:1143: BA ==> BY, BE
data/samtools-1.11/test/stat/13_barcodes_ok_ox_bz.sam:1143: BA ==> BY, BE
data/samtools-1.11/test/stat/13_barcodes_ok_ox_bz.sam:1161: ADDD ==> ADD
data/samtools-1.11/test/stat/13_barcodes_ok_ox_bz.sam:1304: BA ==> BY, BE
data/samtools-1.11/test/stat/13_barcodes_ok_ox_bz.sam:1953: BA ==> BY, BE
data/samtools-1.11/test/stat/13_barcodes_ok_ox_bz.sam:2579: BA ==> BY, BE
data/samtools-1.11/test/stat/13_barcodes_ok_ox_bz.sam:2579: BA ==> BY, BE
data/samtools-1.11/debian/changelog:81: reduntant ==> redundant
data/samtools-1.11/debian/changelog:330: Mimick ==> Mimic
data/samtools-1.11/debian/changelog:431: froms ==> forms
data/samtools-1.11/debian/gbp.conf:2: enty ==> entry, entity