data/sepp-4.3.10+dfsg/CHANGELOG.md:57: requied ==> required
data/sepp-4.3.10+dfsg/README.HIPPI.md:26: SATe ==> state
data/sepp-4.3.10+dfsg/README.HIPPI.md:26: sate ==> state
data/sepp-4.3.10+dfsg/README.HIPPI.md:26: sate ==> state
data/sepp-4.3.10+dfsg/README.SEPP.md:32: SATe ==> state
data/sepp-4.3.10+dfsg/README.SEPP.md:32: sate ==> state
data/sepp-4.3.10+dfsg/README.SEPP.md:32: sate ==> state
data/sepp-4.3.10+dfsg/README.SEPP.md:105: tre ==> tree
data/sepp-4.3.10+dfsg/README.TIPP.md:30: SATe ==> state
data/sepp-4.3.10+dfsg/README.TIPP.md:30: sate ==> state
data/sepp-4.3.10+dfsg/README.TIPP.md:30: sate ==> state
data/sepp-4.3.10+dfsg/README.UPP.md:11: SATe ==> state
data/sepp-4.3.10+dfsg/README.UPP.md:36: SATe ==> state
data/sepp-4.3.10+dfsg/README.UPP.md:36: sate ==> state
data/sepp-4.3.10+dfsg/README.UPP.md:36: sate ==> state
data/sepp-4.3.10+dfsg/setup.py:75: fo ==> of, for
data/sepp-4.3.10+dfsg/setup.py:76: fo ==> of, for
data/sepp-4.3.10+dfsg/setup.py:77: fo ==> of, for
data/sepp-4.3.10+dfsg/setup.py:189: sate ==> state
data/sepp-4.3.10+dfsg/setup.py:221: SATe ==> state
data/sepp-4.3.10+dfsg/sepp-package/DEVGUIDE.md:5: tre ==> tree
data/sepp-4.3.10+dfsg/sepp-package/DEVGUIDE.md:6: tre ==> tree
data/sepp-4.3.10+dfsg/sepp-package/DEVGUIDE.md:7: tre ==> tree
data/sepp-4.3.10+dfsg/sepp-package/README.md:1: pacakge ==> package
data/sepp-4.3.10+dfsg/sepp-package/run-sepp.sh:119: tre ==> tree
data/sepp-4.3.10+dfsg/sepp-package/run-sepp.sh:153: tre ==> tree
data/sepp-4.3.10+dfsg/sepp-package/run-sepp.sh:153: tre ==> tree
data/sepp-4.3.10+dfsg/sepp-package/buildref/README.md:25: tre ==> tree
data/sepp-4.3.10+dfsg/sepp-package/buildref/README.md:35: tre ==> tree
data/sepp-4.3.10+dfsg/sepp-package/buildref/README.md:35: tre ==> tree
data/sepp-4.3.10+dfsg/sepp-package/buildref/README.md:41: tre ==> tree
data/sepp-4.3.10+dfsg/sepp-package/buildref/relabel.py:6: refrence ==> reference
data/sepp-4.3.10+dfsg/sepp-package/buildref/relabel.py:8: tre ==> tree
data/sepp-4.3.10+dfsg/sepp-package/buildref/relabel.py:10: tre ==> tree
data/sepp-4.3.10+dfsg/sepp-package/sepp/setup.py:75: fo ==> of, for
data/sepp-4.3.10+dfsg/sepp-package/sepp/setup.py:76: fo ==> of, for
data/sepp-4.3.10+dfsg/sepp-package/sepp/setup.py:77: fo ==> of, for
data/sepp-4.3.10+dfsg/sepp-package/sepp/setup.py:189: sate ==> state
data/sepp-4.3.10+dfsg/sepp-package/sepp/setup.py:221: SATe ==> state
data/sepp-4.3.10+dfsg/sepp-package/sepp/README.UPP.md:11: SATe ==> state
data/sepp-4.3.10+dfsg/sepp-package/sepp/README.UPP.md:36: SATe ==> state
data/sepp-4.3.10+dfsg/sepp-package/sepp/README.UPP.md:36: sate ==> state
data/sepp-4.3.10+dfsg/sepp-package/sepp/README.UPP.md:36: sate ==> state
data/sepp-4.3.10+dfsg/sepp-package/sepp/README.TIPP.md:30: SATe ==> state
data/sepp-4.3.10+dfsg/sepp-package/sepp/README.TIPP.md:30: sate ==> state
data/sepp-4.3.10+dfsg/sepp-package/sepp/README.TIPP.md:30: sate ==> state
data/sepp-4.3.10+dfsg/sepp-package/sepp/README.SEPP.md:32: SATe ==> state
data/sepp-4.3.10+dfsg/sepp-package/sepp/README.SEPP.md:32: sate ==> state
data/sepp-4.3.10+dfsg/sepp-package/sepp/README.SEPP.md:32: sate ==> state
data/sepp-4.3.10+dfsg/sepp-package/sepp/README.SEPP.md:105: tre ==> tree
data/sepp-4.3.10+dfsg/sepp-package/sepp/README.HIPPI.md:26: SATe ==> state
data/sepp-4.3.10+dfsg/sepp-package/sepp/README.HIPPI.md:26: sate ==> state
data/sepp-4.3.10+dfsg/sepp-package/sepp/README.HIPPI.md:26: sate ==> state
data/sepp-4.3.10+dfsg/sepp-package/sepp/sepp/tree.py:1: SATe ==> state
data/sepp-4.3.10+dfsg/sepp-package/sepp/sepp/tree.py:4: SATe ==> state
data/sepp-4.3.10+dfsg/sepp-package/sepp/sepp/tree.py:6: SATe ==> state
data/sepp-4.3.10+dfsg/sepp-package/sepp/sepp/tree.py:138: nd ==> and, 2nd
data/sepp-4.3.10+dfsg/sepp-package/sepp/sepp/tree.py:139: nd ==> and, 2nd
data/sepp-4.3.10+dfsg/sepp-package/sepp/sepp/tree.py:143: nd ==> and, 2nd
data/sepp-4.3.10+dfsg/sepp-package/sepp/sepp/tree.py:216: te ==> the, be, we
data/sepp-4.3.10+dfsg/sepp-package/sepp/sepp/tree.py:217: te ==> the, be, we
data/sepp-4.3.10+dfsg/sepp-package/sepp/sepp/scratch.py:136: Sate ==> State
data/sepp-4.3.10+dfsg/sepp-package/sepp/sepp/scratch.py:157: sate ==> state
data/sepp-4.3.10+dfsg/sepp-package/sepp/sepp/scratch.py:158: sate ==> state
data/sepp-4.3.10+dfsg/sepp-package/sepp/sepp/scheduler.py:35: errrors ==> errors
data/sepp-4.3.10+dfsg/sepp-package/sepp/sepp/scheduler.py:260: singelton ==> singleton
data/sepp-4.3.10+dfsg/sepp-package/sepp/sepp/scheduler.py:288: singelton ==> singleton
data/sepp-4.3.10+dfsg/sepp-package/sepp/sepp/jobs.py:499: refernce ==> reference
data/sepp-4.3.10+dfsg/sepp-package/sepp/sepp/jobs.py:534: tre ==> tree
data/sepp-4.3.10+dfsg/sepp-package/sepp/sepp/jobs.py:801: Sate ==> State
data/sepp-4.3.10+dfsg/sepp-package/sepp/sepp/jobs.py:804: sate ==> state
data/sepp-4.3.10+dfsg/sepp-package/sepp/sepp/jobs.py:857: Sate ==> State
data/sepp-4.3.10+dfsg/sepp-package/sepp/sepp/jobs.py:880: sate ==> state
data/sepp-4.3.10+dfsg/sepp-package/sepp/sepp/jobs.py:881: sate ==> state
data/sepp-4.3.10+dfsg/sepp-package/sepp/sepp/exhaustive_tipp.py:416: bulid ==> build
data/sepp-4.3.10+dfsg/sepp-package/sepp/sepp/exhaustive.py:187: thsi ==> this
data/sepp-4.3.10+dfsg/sepp-package/sepp/sepp/exhaustive.py:474: bulid ==> build
data/sepp-4.3.10+dfsg/sepp-package/sepp/sepp/ensemble.py:130: bulid ==> build
data/sepp-4.3.10+dfsg/sepp-package/sepp/sepp/decompose_tree.py:175: splitted ==> split
data/sepp-4.3.10+dfsg/sepp-package/sepp/sepp/alignment.py:6: SATe ==> state
data/sepp-4.3.10+dfsg/sepp-package/sepp/sepp/alignment.py:7: sate ==> state
data/sepp-4.3.10+dfsg/sepp-package/sepp/sepp/alignment.py:127: characeters ==> characters
data/sepp-4.3.10+dfsg/sepp-package/sepp/sepp/alignment.py:404: calss ==> calls, class
data/sepp-4.3.10+dfsg/sepp/alignment.py:6: SATe ==> state
data/sepp-4.3.10+dfsg/sepp/alignment.py:7: sate ==> state
data/sepp-4.3.10+dfsg/sepp/alignment.py:127: characeters ==> characters
data/sepp-4.3.10+dfsg/sepp/alignment.py:404: calss ==> calls, class
data/sepp-4.3.10+dfsg/sepp/decompose_tree.py:175: splitted ==> split
data/sepp-4.3.10+dfsg/sepp/exhaustive.py:187: thsi ==> this
data/sepp-4.3.10+dfsg/sepp/exhaustive.py:474: bulid ==> build
data/sepp-4.3.10+dfsg/sepp/jobs.py:499: refernce ==> reference
data/sepp-4.3.10+dfsg/sepp/jobs.py:534: tre ==> tree
data/sepp-4.3.10+dfsg/sepp/jobs.py:801: Sate ==> State
data/sepp-4.3.10+dfsg/sepp/jobs.py:804: sate ==> state
data/sepp-4.3.10+dfsg/sepp/jobs.py:857: Sate ==> State
data/sepp-4.3.10+dfsg/sepp/jobs.py:880: sate ==> state
data/sepp-4.3.10+dfsg/sepp/jobs.py:881: sate ==> state
data/sepp-4.3.10+dfsg/sepp/scheduler.py:35: errrors ==> errors
data/sepp-4.3.10+dfsg/sepp/scheduler.py:260: singelton ==> singleton
data/sepp-4.3.10+dfsg/sepp/scheduler.py:288: singelton ==> singleton
data/sepp-4.3.10+dfsg/sepp/scratch.py:136: Sate ==> State
data/sepp-4.3.10+dfsg/sepp/scratch.py:157: sate ==> state
data/sepp-4.3.10+dfsg/sepp/scratch.py:158: sate ==> state
data/sepp-4.3.10+dfsg/sepp/tree.py:1: SATe ==> state
data/sepp-4.3.10+dfsg/sepp/tree.py:4: SATe ==> state
data/sepp-4.3.10+dfsg/sepp/tree.py:6: SATe ==> state
data/sepp-4.3.10+dfsg/sepp/tree.py:138: nd ==> and, 2nd
data/sepp-4.3.10+dfsg/sepp/tree.py:139: nd ==> and, 2nd
data/sepp-4.3.10+dfsg/sepp/tree.py:143: nd ==> and, 2nd
data/sepp-4.3.10+dfsg/sepp/tree.py:216: te ==> the, be, we
data/sepp-4.3.10+dfsg/sepp/tree.py:217: te ==> the, be, we
data/sepp-4.3.10+dfsg/sepp/ensemble.py:130: bulid ==> build
data/sepp-4.3.10+dfsg/sepp/exhaustive_tipp.py:416: bulid ==> build
data/sepp-4.3.10+dfsg/test/unittest/TestForkJoin.py:308: upto ==> up to
data/sepp-4.3.10+dfsg/test/unittest/TestForkJoin.py:365: achived ==> achieved, archived
data/sepp-4.3.10+dfsg/test/unittest/testAlignment.py:38: sate ==> state
data/sepp-4.3.10+dfsg/test/unittest/testAlignment.py:46: sate ==> state
data/sepp-4.3.10+dfsg/test/unittest/testAlignment.py:82: sate ==> state
data/sepp-4.3.10+dfsg/test/unittest/data/mock/pyrg/CONTENTS.json:5: sate ==> state
data/sepp-4.3.10+dfsg/test/unittest/data/mock/pyrg/CONTENTS.json:5: tre ==> tree
data/sepp-4.3.10+dfsg/test/unittest/data/mock/pyrg/CONTENTS.json:6: sate ==> state
data/sepp-4.3.10+dfsg/test/unittest/data/mock/pyrg/CONTENTS.json:8: sate ==> state
data/sepp-4.3.10+dfsg/test/unittest/data/mock/pyrg/CONTENTS.json:8: tre ==> tree
data/sepp-4.3.10+dfsg/test/unittest/data/mock/rpsS/CONTENTS.json:5: sate ==> state
data/sepp-4.3.10+dfsg/test/unittest/data/mock/rpsS/CONTENTS.json:5: tre ==> tree
data/sepp-4.3.10+dfsg/test/unittest/data/mock/rpsS/CONTENTS.json:6: sate ==> state
data/sepp-4.3.10+dfsg/test/unittest/data/mock/rpsS/CONTENTS.json:8: sate ==> state
data/sepp-4.3.10+dfsg/test/unittest/data/mock/rpsS/CONTENTS.json:8: tre ==> tree
data/sepp-4.3.10+dfsg/test/unittest/data/simulated/test.fasta:317: SIE ==> SIZE, SIGH
data/sepp-4.3.10+dfsg/test/unittest/data/simulated/test.fasta:527: SEH ==> SHE
data/sepp-4.3.10+dfsg/test/unittest/data/simulated/test.tree:1: SEH ==> SHE
data/sepp-4.3.10+dfsg/test/unittest/data/simulated/test.tree:1: SIE ==> SIZE, SIGH
data/sepp-4.3.10+dfsg/test/unittest/data/tmp/pplacer.extended.3WKAO3.json:96: tre ==> tree
data/sepp-4.3.10+dfsg/test/unittest/data/tmp/pplacer.extended.8RdBXg.json:15: tre ==> tree
data/sepp-4.3.10+dfsg/test/unittest/data/tmp/pplacer.extended.AHkaYv.json:11: tre ==> tree
data/sepp-4.3.10+dfsg/test/unittest/data/tmp/pplacer.extended.AdyVrD.json:16: tre ==> tree
data/sepp-4.3.10+dfsg/test/unittest/data/tmp/pplacer.extended.H5Nqll.json:118: tre ==> tree
data/sepp-4.3.10+dfsg/test/unittest/data/tmp/pplacer.extended.IYiY9D.json:2: SIE ==> SIZE, SIGH
data/sepp-4.3.10+dfsg/test/unittest/data/tmp/pplacer.extended.IYiY9D.json:26: tre ==> tree
data/sepp-4.3.10+dfsg/test/unittest/data/tmp/pplacer.extended.Ijl52Y.json:2: SEH ==> SHE
data/sepp-4.3.10+dfsg/test/unittest/data/tmp/pplacer.extended.Ijl52Y.json:33: tre ==> tree
data/sepp-4.3.10+dfsg/test/unittest/data/tmp/pplacer.extended.OAVLQz.json:7: tre ==> tree
data/sepp-4.3.10+dfsg/test/unittest/data/tmp/pplacer.extended.TW4aaE.json:26: tre ==> tree
data/sepp-4.3.10+dfsg/test/unittest/data/tmp/pplacer.extended.WO5_7o.json:24: tre ==> tree
data/sepp-4.3.10+dfsg/test/unittest/data/tmp/pplacer.extended.ZZ8XZg.json:18: tre ==> tree
data/sepp-4.3.10+dfsg/test/unittest/data/tmp/pplacer.extended.c9n2y1.json:13: tre ==> tree
data/sepp-4.3.10+dfsg/test/unittest/data/tmp/pplacer.extended.cTTWYu.json:16: tre ==> tree
data/sepp-4.3.10+dfsg/test/unittest/data/tmp/pplacer.extended.fKLDHB.json:33: tre ==> tree
data/sepp-4.3.10+dfsg/test/unittest/data/tmp/pplacer.extended.m3dfwE.json:5: tre ==> tree
data/sepp-4.3.10+dfsg/test/unittest/data/tmp/pplacer.extended.nGj5pC.json:57: tre ==> tree
data/sepp-4.3.10+dfsg/test/unittest/data/tmp/pplacer.extended.pgb651.json:17: tre ==> tree
data/sepp-4.3.10+dfsg/test/unittest/data/tmp/pplacer.extended.qDGSlJ.json:23: tre ==> tree
data/sepp-4.3.10+dfsg/test/unittest/data/tmp/pplacer.extended.qMfP9u.json:43: tre ==> tree
data/sepp-4.3.10+dfsg/test/unittest/data/tmp/pplacer.extended.rHLqYB.json:25: tre ==> tree
data/sepp-4.3.10+dfsg/test/unittest/data/tmp/pplacer.extended.wDx1p5.json:54: tre ==> tree
data/sepp-4.3.10+dfsg/test/unittest/data/tmp/pplacer.extended.xWyZ2x.json:36: tre ==> tree
data/sepp-4.3.10+dfsg/test/unittest/data/tmp/tempmerge:1: SEH ==> SHE
data/sepp-4.3.10+dfsg/test/unittest/data/tmp/tempmerge:1: SIE ==> SIZE, SIGH
data/sepp-4.3.10+dfsg/test/unittest/data/tmp/tempmerge:18: SEH ==> SHE
data/sepp-4.3.10+dfsg/test/unittest/data/tmp/tempmerge:26: SIE ==> SIZE, SIGH
data/sepp-4.3.10+dfsg/test/unittest/data/upp/initial.fas:2201: SEH ==> SHE
data/sepp-4.3.10+dfsg/test/unittest/data/upp/initial.fas:26241: SHIF ==> SHIFT
data/sepp-4.3.10+dfsg/test/unittest/data/upp/initial.fas:34041: SIE ==> SIZE, SIGH
data/sepp-4.3.10+dfsg/test/unittest/data/upp/query.fas:809: SEH ==> SHE
data/sepp-4.3.10+dfsg/test/unittest/data/upp/query.fas:1487: SHIF ==> SHIFT
data/sepp-4.3.10+dfsg/test/unittest/data/upp/query.fas:1609: SIE ==> SIZE, SIGH
data/sepp-4.3.10+dfsg/tools/merge/src/edu/rice/cs/bioinfo/programs/phylonet/algos/lca/SchieberVishkinLCA.java:702: occured ==> occurred
data/sepp-4.3.10+dfsg/tools/merge/src/edu/rice/cs/bioinfo/programs/phylonet/structs/tree/model/TMutableNode.java:113: overriden ==> overridden
data/sepp-4.3.10+dfsg/tools/merge/src/edu/rice/cs/bioinfo/programs/phylonet/structs/tree/model/sti/STINode.java:405: arbitary ==> arbitrary
data/sepp-4.3.10+dfsg/tools/merge/src/edu/rice/cs/bioinfo/programs/phylonet/structs/tree/model/sti/STINode.java:406: accomodated ==> accommodated
data/sepp-4.3.10+dfsg/tools/merge/src/edu/rice/cs/bioinfo/programs/phylonet/structs/tree/util/Collapse.java:503: implemetation ==> implementation
data/sepp-4.3.10+dfsg/tools/merge/src/edu/rice/cs/bioinfo/programs/phylonet/structs/tree/util/PostTraversal.java:84: traveral ==> traversal
data/sepp-4.3.10+dfsg/tools/merge/src/phylolab/taxonamic/JSONMerger.java:491: ouput ==> output
data/sepp-4.3.10+dfsg/tools/merge/src/phylolab/taxonamic/JSONMerger.java:652: followd ==> followed, follows, follow
data/sepp-4.3.10+dfsg/tools/merge/src/phylolab/taxonamic/JSONMerger.java:660: followd ==> followed, follows, follow
data/sepp-4.3.10+dfsg/tutorial/sepp-tutorial.md:161: sate ==> state
data/sepp-4.3.10+dfsg/tutorial/sepp-tutorial.md:161: tre ==> tree
data/sepp-4.3.10+dfsg/tutorial/sepp-tutorial.md:161: sate ==> state
data/sepp-4.3.10+dfsg/tutorial/sepp-tutorial.md:161: tre ==> tree
data/sepp-4.3.10+dfsg/tutorial/sepp-tutorial.md:161: sate ==> state
data/sepp-4.3.10+dfsg/tutorial/sepp-tutorial.md:269: sate ==> state
data/sepp-4.3.10+dfsg/tutorial/sepp-tutorial.md:269: tre ==> tree
data/sepp-4.3.10+dfsg/tutorial/sepp-tutorial.md:269: sate ==> state
data/sepp-4.3.10+dfsg/tutorial/sepp-tutorial.md:269: tre ==> tree
data/sepp-4.3.10+dfsg/tutorial/sepp-tutorial.md:269: sate ==> state
data/sepp-4.3.10+dfsg/tutorial/sepp-tutorial.md:336: sate ==> state
data/sepp-4.3.10+dfsg/tutorial/sepp-tutorial.md:336: tre ==> tree
data/sepp-4.3.10+dfsg/tutorial/sepp-tutorial.md:336: sate ==> state
data/sepp-4.3.10+dfsg/tutorial/sepp-tutorial.md:336: tre ==> tree
data/sepp-4.3.10+dfsg/tutorial/sepp-tutorial.md:336: sate ==> state
data/sepp-4.3.10+dfsg/tutorial/sepp-tutorial.md:459: sate ==> state
data/sepp-4.3.10+dfsg/tutorial/sepp-tutorial.md:459: tre ==> tree
data/sepp-4.3.10+dfsg/tutorial/sepp-tutorial.md:459: sate ==> state
data/sepp-4.3.10+dfsg/tutorial/sepp-tutorial.md:502: sate ==> state
data/sepp-4.3.10+dfsg/tutorial/sepp-tutorial.md:502: tre ==> tree
data/sepp-4.3.10+dfsg/tutorial/sepp-tutorial.md:502: sate ==> state
data/sepp-4.3.10+dfsg/tutorial/sepp-tutorial.md:502: tre ==> tree
data/sepp-4.3.10+dfsg/tutorial/sepp-tutorial.md:502: sate ==> state
data/sepp-4.3.10+dfsg/tutorial/sepp-tutorial.md:523: sate ==> state
data/sepp-4.3.10+dfsg/tutorial/sepp-tutorial.md:523: tre ==> tree
data/sepp-4.3.10+dfsg/tutorial/sepp-tutorial.md:524: sate ==> state
data/sepp-4.3.10+dfsg/tutorial/sepp-tutorial.md:524: tre ==> tree
data/sepp-4.3.10+dfsg/tutorial/sepp-tutorial.md:525: sate ==> state
data/sepp-4.3.10+dfsg/tutorial/sepp-tutorial.md:582: Refrences ==> References
data/sepp-4.3.10+dfsg/tutorial/tipp-tutorial.md:29: SATe ==> state
data/sepp-4.3.10+dfsg/tutorial/tipp-tutorial.md:29: sate ==> state
data/sepp-4.3.10+dfsg/tutorial/tipp-tutorial.md:29: sate ==> state
data/sepp-4.3.10+dfsg/tutorial/tipp-tutorial.md:325: sate ==> state
data/sepp-4.3.10+dfsg/tutorial/tipp-tutorial.md:325: sate ==> state
data/sepp-4.3.10+dfsg/tutorial/upp-tutorial.md:10: SATe ==> state
data/sepp-4.3.10+dfsg/tutorial/upp-tutorial.md:41: SATe ==> state
data/sepp-4.3.10+dfsg/tutorial/upp-tutorial.md:41: sate ==> state
data/sepp-4.3.10+dfsg/tutorial/upp-tutorial.md:41: sate ==> state
data/sepp-4.3.10+dfsg/tutorial/obsolete/sepp-tutorial.tex:56: sate ==> state
data/sepp-4.3.10+dfsg/tutorial/obsolete/sepp-tutorial.tex:89: sate ==> state
data/sepp-4.3.10+dfsg/tutorial/obsolete/sepp-tutorial.tex:142: sate ==> state
data/sepp-4.3.10+dfsg/tutorial/obsolete/sepp-tutorial.tex:170: sate ==> state
data/sepp-4.3.10+dfsg/tutorial/obsolete/sepp-tutorial.tex:170: tre ==> tree
data/sepp-4.3.10+dfsg/tutorial/obsolete/sepp-tutorial.tex:170: sate ==> state
data/sepp-4.3.10+dfsg/tutorial/obsolete/sepp-tutorial.tex:170: tre ==> tree
data/sepp-4.3.10+dfsg/tutorial/obsolete/sepp-tutorial.tex:170: sate ==> state
data/sepp-4.3.10+dfsg/tutorial/obsolete/sepp-tutorial.tex:246: sate ==> state
data/sepp-4.3.10+dfsg/tutorial/obsolete/sepp-tutorial.tex:246: tre ==> tree
data/sepp-4.3.10+dfsg/tutorial/obsolete/sepp-tutorial.tex:246: sate ==> state
data/sepp-4.3.10+dfsg/tutorial/obsolete/sepp-tutorial.tex:246: tre ==> tree
data/sepp-4.3.10+dfsg/tutorial/obsolete/sepp-tutorial.tex:246: sate ==> state
data/sepp-4.3.10+dfsg/tutorial/obsolete/sepp-tutorial.tex:263: sate ==> state
data/sepp-4.3.10+dfsg/tutorial/obsolete/sepp-tutorial.tex:268: sate ==> state
data/sepp-4.3.10+dfsg/tutorial/obsolete/sepp-tutorial.tex:268: tre ==> tree
data/sepp-4.3.10+dfsg/tutorial/obsolete/sepp-tutorial.tex:268: sate ==> state
data/sepp-4.3.10+dfsg/tutorial/obsolete/sepp-tutorial.tex:268: tre ==> tree
data/sepp-4.3.10+dfsg/tutorial/obsolete/sepp-tutorial.tex:268: sate ==> state
data/sepp-4.3.10+dfsg/tutorial/obsolete/sepp-tutorial.tex:307: sate ==> state
data/sepp-4.3.10+dfsg/tutorial/obsolete/sepp-tutorial.tex:307: sate ==> state
data/sepp-4.3.10+dfsg/tutorial/obsolete/sepp-tutorial.tex:309: sate ==> state
data/sepp-4.3.10+dfsg/tutorial/obsolete/sepp-tutorial.tex:325: sate ==> state
data/sepp-4.3.10+dfsg/tutorial/obsolete/sepp-tutorial.tex:325: tre ==> tree
data/sepp-4.3.10+dfsg/tutorial/obsolete/sepp-tutorial.tex:325: sate ==> state
data/sepp-4.3.10+dfsg/tutorial/obsolete/sepp-tutorial.tex:325: tre ==> tree
data/sepp-4.3.10+dfsg/tutorial/obsolete/sepp-tutorial.tex:325: sate ==> state
data/sepp-4.3.10+dfsg/tutorial/obsolete/sepp-tutorial.tex:338: sate ==> state
data/sepp-4.3.10+dfsg/tutorial/obsolete/sepp-tutorial.tex:338: tre ==> tree
data/sepp-4.3.10+dfsg/tutorial/obsolete/sepp-tutorial.tex:339: sate ==> state
data/sepp-4.3.10+dfsg/tutorial/obsolete/sepp-tutorial.tex:339: tre ==> tree
data/sepp-4.3.10+dfsg/tutorial/obsolete/sepp-tutorial.tex:340: sate ==> state
data/sepp-4.3.10+dfsg/tutorial/obsolete/sepp.bib:161: ois ==> is
data/sepp-4.3.10+dfsg/debian/tests/test-simple-sepp-call:15: sate ==> state
data/sepp-4.3.10+dfsg/debian/tests/test-simple-sepp-call:15: tre ==> tree
data/sepp-4.3.10+dfsg/debian/tests/test-simple-sepp-call:15: sate ==> state
data/sepp-4.3.10+dfsg/debian/tests/test-simple-sepp-call:15: tre ==> tree
data/sepp-4.3.10+dfsg/debian/tests/test-simple-sepp-call:15: sate ==> state
data/sepp-4.3.10+dfsg/.pc/setup.patch/setup.py:75: fo ==> of, for
data/sepp-4.3.10+dfsg/.pc/setup.patch/setup.py:76: fo ==> of, for
data/sepp-4.3.10+dfsg/.pc/setup.patch/setup.py:77: fo ==> of, for
data/sepp-4.3.10+dfsg/.pc/setup.patch/setup.py:182: sate ==> state
data/sepp-4.3.10+dfsg/.pc/setup.patch/setup.py:214: SATe ==> state
data/sepp-4.3.10+dfsg/.pc/use_debian_packaged_guppy_from_pplacer.patch/setup.py:75: fo ==> of, for
data/sepp-4.3.10+dfsg/.pc/use_debian_packaged_guppy_from_pplacer.patch/setup.py:76: fo ==> of, for
data/sepp-4.3.10+dfsg/.pc/use_debian_packaged_guppy_from_pplacer.patch/setup.py:77: fo ==> of, for
data/sepp-4.3.10+dfsg/.pc/use_debian_packaged_guppy_from_pplacer.patch/setup.py:182: sate ==> state
data/sepp-4.3.10+dfsg/.pc/use_debian_packaged_guppy_from_pplacer.patch/setup.py:214: SATe ==> state
data/sepp-4.3.10+dfsg/.pc/use_debian_packaged_guppy_from_pplacer.patch/sepp-package/run-sepp.sh:119: tre ==> tree
data/sepp-4.3.10+dfsg/.pc/use_debian_packaged_guppy_from_pplacer.patch/sepp-package/run-sepp.sh:153: tre ==> tree
data/sepp-4.3.10+dfsg/.pc/use_debian_packaged_guppy_from_pplacer.patch/sepp-package/run-sepp.sh:153: tre ==> tree
data/sepp-4.3.10+dfsg/.pc/json_collections.patch/tools/merge/src/phylolab/taxonamic/JSONMerger.java:483: ouput ==> output
data/sepp-4.3.10+dfsg/.pc/json_collections.patch/tools/merge/src/phylolab/taxonamic/JSONMerger.java:642: followd ==> followed, follows, follow
data/sepp-4.3.10+dfsg/.pc/json_collections.patch/tools/merge/src/phylolab/taxonamic/JSONMerger.java:650: followd ==> followed, follows, follow
data/sepp-4.3.10+dfsg/.pc/configuration_files_in_etc_and_per_user.patch/sepp/ensemble.py:130: bulid ==> build
data/sepp-4.3.10+dfsg/.pc/configuration_files_in_etc_and_per_user.patch/sepp/exhaustive_tipp.py:416: bulid ==> build
data/sepp-4.3.10+dfsg/.pc/looking_for_integer_in_placements.patch/tools/merge/src/phylolab/taxonamic/JSONMerger.java:485: ouput ==> output
data/sepp-4.3.10+dfsg/.pc/looking_for_integer_in_placements.patch/tools/merge/src/phylolab/taxonamic/JSONMerger.java:646: followd ==> followed, follows, follow
data/sepp-4.3.10+dfsg/.pc/looking_for_integer_in_placements.patch/tools/merge/src/phylolab/taxonamic/JSONMerger.java:654: followd ==> followed, follows, follow