data/sga-0.10.15/src/README:73: familar ==> familiar
data/sga-0.10.15/src/configure.ac:21: clock_getttime ==> clock_gettime
data/sga-0.10.15/src/Algorithm/LRAlignment.cpp:298: wth ==> with
data/sga-0.10.15/src/Algorithm/OverlapAlgorithm.cpp:260: existance ==> existence
data/sga-0.10.15/src/Algorithm/OverlapAlgorithm.cpp:493: intialize ==> initialize
data/sga-0.10.15/src/Algorithm/OverlapAlgorithm.cpp:1035: superceded ==> superseded
data/sga-0.10.15/src/Algorithm/OverlapBlock.cpp:20: nd ==> and, 2nd
data/sga-0.10.15/src/Algorithm/OverlapBlock.cpp:25: nd ==> and, 2nd
data/sga-0.10.15/src/Algorithm/OverlapBlock.cpp:92: HIST ==> HEIST, HIS
data/sga-0.10.15/src/Algorithm/OverlapBlock.cpp:271: entirity ==> entirety
data/sga-0.10.15/src/Algorithm/OverlapBlock.h:85: nd ==> and, 2nd
data/sga-0.10.15/src/Algorithm/OverlapBlock.h:89: nd ==> and, 2nd
data/sga-0.10.15/src/Algorithm/OverlapBlock.h:95: nd ==> and, 2nd
data/sga-0.10.15/src/Algorithm/QCProcess.cpp:238: reprsenting ==> representing
data/sga-0.10.15/src/Algorithm/QCProcess.cpp:362: degenrate ==> degenerate
data/sga-0.10.15/src/Algorithm/SearchHistory.cpp:229: hist ==> heist, his
data/sga-0.10.15/src/Algorithm/SearchHistory.cpp:231: hist ==> heist, his
data/sga-0.10.15/src/Algorithm/SearchHistory.cpp:231: hist ==> heist, his
data/sga-0.10.15/src/Algorithm/SearchHistory.h:57: hist ==> heist, his
data/sga-0.10.15/src/Algorithm/SearchSeed.h:49: inteval ==> interval
data/sga-0.10.15/src/Algorithm/StringThreader.cpp:29: recurisvely ==> recursively
data/sga-0.10.15/src/Algorithm/VariationBuilderCommon.cpp:69: betwee ==> between
data/sga-0.10.15/src/Algorithm/VariationBuilderCommon.h:76: betwee ==> between
data/sga-0.10.15/src/Algorithm/GapFillProcess.cpp:163: successfull ==> successful
data/sga-0.10.15/src/Bigraph/Bigraph.cpp:93: existance ==> existence
data/sga-0.10.15/src/Bigraph/Bigraph.cpp:209: guarenteed ==> guaranteed
data/sga-0.10.15/src/Bigraph/Bigraph.cpp:412: hasnt ==> hasn't
data/sga-0.10.15/src/Bigraph/Bigraph.h:52: guarenteed ==> guaranteed
data/sga-0.10.15/src/Concurrency/SequenceWorkItem.h:29: Genereic ==> Generic
data/sga-0.10.15/src/GraphDiff/DeBruijnHaplotypeBuilder.cpp:251: reprsented ==> represented
data/sga-0.10.15/src/GraphDiff/DindelRealignWindow.cpp:2024: lik ==> like, lick, link
data/sga-0.10.15/src/GraphDiff/DindelRealignWindow.cpp:2158: eNew ==> new
data/sga-0.10.15/src/GraphDiff/DindelRealignWindow.cpp:2192: eNew ==> new
data/sga-0.10.15/src/GraphDiff/DindelRealignWindow.cpp:2201: eNew ==> new
data/sga-0.10.15/src/GraphDiff/DindelRealignWindow.cpp:2205: eNew ==> new
data/sga-0.10.15/src/GraphDiff/DindelRealignWindow.cpp:2220: eNew ==> new
data/sga-0.10.15/src/GraphDiff/DindelRealignWindow.cpp:2277: eNew ==> new
data/sga-0.10.15/src/GraphDiff/DindelRealignWindow.cpp:2330: eNew ==> new
data/sga-0.10.15/src/GraphDiff/DindelRealignWindow.cpp:2346: eNew ==> new
data/sga-0.10.15/src/GraphDiff/DindelRealignWindow.cpp:2350: eNew ==> new
data/sga-0.10.15/src/GraphDiff/DindelRealignWindow.cpp:2360: eNew ==> new
data/sga-0.10.15/src/GraphDiff/DindelRealignWindow.cpp:2678: convering ==> converting, covering
data/sga-0.10.15/src/GraphDiff/DindelRealignWindow.cpp:2696: lik ==> like, lick, link
data/sga-0.10.15/src/GraphDiff/DindelRealignWindow.cpp:2829: convering ==> converting, covering
data/sga-0.10.15/src/GraphDiff/DindelRealignWindow.cpp:2845: lik ==> like, lick, link
data/sga-0.10.15/src/GraphDiff/DindelRealignWindow.cpp:3049: refernce ==> reference
data/sga-0.10.15/src/GraphDiff/DindelRealignWindow.cpp:3449: lik ==> like, lick, link
data/sga-0.10.15/src/GraphDiff/DindelRealignWindow.cpp:3463: lik ==> like, lick, link
data/sga-0.10.15/src/GraphDiff/DindelRealignWindow.cpp:3508: lik ==> like, lick, link
data/sga-0.10.15/src/GraphDiff/DindelRealignWindow.cpp:3627: itialize ==> initialize
data/sga-0.10.15/src/GraphDiff/DindelRealignWindow.cpp:3689: chech ==> check, czech
data/sga-0.10.15/src/GraphDiff/DindelRealignWindow.cpp:3966: itialize ==> initialize
data/sga-0.10.15/src/GraphDiff/DindelRealignWindow.cpp:4049: chech ==> check, czech
data/sga-0.10.15/src/GraphDiff/DindelRealignWindow.cpp:4322: itialize ==> initialize
data/sga-0.10.15/src/GraphDiff/DindelRealignWindow.cpp:4408: chech ==> check, czech
data/sga-0.10.15/src/GraphDiff/DindelRealignWindow.h:752: Funtions ==> Functions
data/sga-0.10.15/src/GraphDiff/DindelUtil.cpp:40: canidate ==> candidate
data/sga-0.10.15/src/GraphDiff/OverlapHaplotypeBuilder.cpp:281: struture ==> structure
data/sga-0.10.15/src/GraphDiff/OverlapHaplotypeBuilder.h:106: redudant ==> redundant
data/sga-0.10.15/src/SGA/OverlapCommon.cpp:28: convertor ==> converter
data/sga-0.10.15/src/SGA/OverlapCommon.cpp:33: convertor ==> converter
data/sga-0.10.15/src/SGA/OverlapCommon.cpp:40: convertor ==> converter
data/sga-0.10.15/src/SGA/assemble.cpp:195: Peform ==> Perform
data/sga-0.10.15/src/SGA/filter.cpp:64: mimimum ==> minimum
data/sga-0.10.15/src/SGA/gmap.cpp:47: QUERYS ==> QUERIES
data/sga-0.10.15/src/SGA/gmap.cpp:48: QUERYS ==> QUERIES
data/sga-0.10.15/src/SGA/gmap.cpp:158: processsed ==> processed
data/sga-0.10.15/src/SGA/gmap.cpp:228: convertor ==> converter
data/sga-0.10.15/src/SGA/gmap.cpp:229: convertor ==> converter
data/sga-0.10.15/src/SGA/gmap.cpp:236: convertor ==> converter
data/sga-0.10.15/src/SGA/haplotype-filter.cpp:287: fpr ==> for, far, fps
data/sga-0.10.15/src/SGA/haplotype-filter.cpp:309: fpr ==> for, far, fps
data/sga-0.10.15/src/SGA/index.cpp:43: sais ==> says
data/sga-0.10.15/src/SGA/index.cpp:67: sais ==> says
data/sga-0.10.15/src/SGA/index.cpp:104: sais ==> says
data/sga-0.10.15/src/SGA/index.cpp:193: SAIS ==> SAYS
data/sga-0.10.15/src/SGA/index.cpp:328: sais ==> says
data/sga-0.10.15/src/SGA/index.cpp:330: sais ==> says
data/sga-0.10.15/src/SGA/kmer-count.cpp:134: indicies ==> indices
data/sga-0.10.15/src/SGA/kmer-count.cpp:139: Intitialize ==> Initialize
data/sga-0.10.15/src/SGA/kmer-count.cpp:143: indicies ==> indices
data/sga-0.10.15/src/SGA/kmer-count.cpp:158: retreive ==> retrieve
data/sga-0.10.15/src/SGA/kmer-count.cpp:158: occurence ==> occurrence
data/sga-0.10.15/src/SGA/kmer-count.cpp:164: indicies ==> indices
data/sga-0.10.15/src/SGA/kmer-count.cpp:171: indicies ==> indices
data/sga-0.10.15/src/SGA/kmer-count.cpp:172: indicies ==> indices
data/sga-0.10.15/src/SGA/kmer-count.cpp:183: indicies ==> indices
data/sga-0.10.15/src/SGA/kmer-count.cpp:184: indicies ==> indices
data/sga-0.10.15/src/SGA/kmer-count.cpp:197: indicies ==> indices
data/sga-0.10.15/src/SGA/overlap-long.cpp:300: processsed ==> processed
data/sga-0.10.15/src/SGA/overlap.cpp:235: processsed ==> processed
data/sga-0.10.15/src/SGA/oview.h:20: nd ==> and, 2nd
data/sga-0.10.15/src/SGA/oview.h:20: nd ==> and, 2nd
data/sga-0.10.15/src/SGA/preqc.cpp:328: nd ==> and, 2nd
data/sga-0.10.15/src/SGA/preqc.cpp:334: nd ==> and, 2nd
data/sga-0.10.15/src/SGA/preqc.cpp:336: nd ==> and, 2nd
data/sga-0.10.15/src/SGA/preqc.cpp:341: nd ==> and, 2nd
data/sga-0.10.15/src/SGA/preqc.cpp:347: nd ==> and, 2nd
data/sga-0.10.15/src/SGA/preqc.cpp:348: nd ==> and, 2nd
data/sga-0.10.15/src/SGA/preqc.cpp:1529: negligable ==> negligible
data/sga-0.10.15/src/SGA/preqc.cpp:1680: probablistic ==> probabilistic
data/sga-0.10.15/src/SGA/preqc.cpp:1844: seach ==> search
data/sga-0.10.15/src/SGA/preqc.cpp:2046: seach ==> search
data/sga-0.10.15/src/SGA/scaffold.cpp:34: minimun ==> minimum
data/sga-0.10.15/src/SGA/scaffold2fasta.cpp:41: supercedes ==> supersedes
data/sga-0.10.15/src/SGA/walk.cpp:170: postion ==> position
data/sga-0.10.15/src/SGA/rmdup.cpp:158: processsed ==> processed
data/sga-0.10.15/src/SQG/ASQG.cpp:31: TE ==> THE, BE, WE
data/sga-0.10.15/src/Scaffold/ScaffoldGroup.cpp:89: probabilty ==> probability
data/sga-0.10.15/src/Scaffold/ScaffoldGroup.cpp:318: probabilty ==> probability
data/sga-0.10.15/src/Scaffold/ScaffoldGroup.cpp:331: probabilty ==> probability
data/sga-0.10.15/src/Scaffold/ScaffoldGroup.cpp:331: probabilty ==> probability
data/sga-0.10.15/src/Scaffold/ScaffoldGroup.h:43: probabilty ==> probability
data/sga-0.10.15/src/StringGraph/GraphSearchTree.h:546: havent ==> haven't
data/sga-0.10.15/src/StringGraph/SGSearch.cpp:76: inbetween ==> between, in between
data/sga-0.10.15/src/StringGraph/SGWalk.cpp:402: incude ==> include
data/sga-0.10.15/src/SuffixTools/BWT.h:11: inheritence ==> inheritance
data/sga-0.10.15/src/SuffixTools/BWTAlgorithms.cpp:183: signficant ==> significant
data/sga-0.10.15/src/SuffixTools/BWTAlgorithms.h:60: corrsponds ==> corresponds
data/sga-0.10.15/src/SuffixTools/BWTAlgorithms.h:126: containining ==> containing
data/sga-0.10.15/src/SuffixTools/BWTAlgorithms.h:133: containining ==> containing
data/sga-0.10.15/src/SuffixTools/BWTCABauerCoxRosone.cpp:24: sentinal ==> sentinel
data/sga-0.10.15/src/SuffixTools/BWTDiskConstruction.cpp:163: SAIS ==> SAYS
data/sga-0.10.15/src/SuffixTools/BWTDiskConstruction.cpp:473: SAIs ==> says
data/sga-0.10.15/src/SuffixTools/BWTWriterAscii.cpp:96: delibrately ==> deliberately
data/sga-0.10.15/src/SuffixTools/HitData.h:20: nd ==> and, 2nd
data/sga-0.10.15/src/SuffixTools/HitData.h:21: nd ==> and, 2nd
data/sga-0.10.15/src/SuffixTools/PopulationIndex.cpp:66: guarenteed ==> guaranteed
data/sga-0.10.15/src/SuffixTools/RLBWT.cpp:342: distrubtion ==> distribution
data/sga-0.10.15/src/SuffixTools/SACAInducedCopying.cpp:222: ba ==> by, be
data/sga-0.10.15/src/SuffixTools/SACAInducedCopying.cpp:223: ba ==> by, be
data/sga-0.10.15/src/SuffixTools/SACAInducedCopying.cpp:223: ba ==> by, be
data/sga-0.10.15/src/SuffixTools/SACAInducedCopying.cpp:223: ba ==> by, be
data/sga-0.10.15/src/SuffixTools/SBWT.cpp:56: occurance ==> occurrence
data/sga-0.10.15/src/SuffixTools/SBWT.cpp:61: occurances ==> occurrences
data/sga-0.10.15/src/SuffixTools/SuffixArray.cpp:134: cooresponding ==> corresponding
data/sga-0.10.15/src/Thirdparty/multiple_alignment.cpp:289: seperately ==> separately
data/sga-0.10.15/src/Thirdparty/multiple_alignment.cpp:728: probabilty ==> probability
data/sga-0.10.15/src/Thirdparty/overlapper.cpp:716: Initialze ==> Initialize
data/sga-0.10.15/src/Thirdparty/stdaln.c:588: excuted ==> executed
data/sga-0.10.15/src/Thirdparty/stdaln.c:590: Acually ==> Actually
data/sga-0.10.15/src/Thirdparty/stdaln.h:31: aligments ==> alignments
data/sga-0.10.15/src/Thirdparty/rapidjson/document.h:283: transfered ==> transferred
data/sga-0.10.15/src/Thirdparty/rapidjson/document.h:420: transfered ==> transferred
data/sga-0.10.15/src/Thirdparty/rapidjson/document.h:769: occured ==> occurred
data/sga-0.10.15/src/Thirdparty/rapidjson/prettywriter.h:10: ouptut ==> output
data/sga-0.10.15/src/Thirdparty/rapidjson/reader.h:363: hexidecimal ==> hexadecimal
data/sga-0.10.15/src/Util/Alphabet.h:421: guarentee ==> guarantee
data/sga-0.10.15/src/Util/Alphabet.h:480: guarentee ==> guarantee
data/sga-0.10.15/src/Util/Alphabet.h:501: guarentee ==> guarantee
data/sga-0.10.15/src/Util/BWT4Codec.h:84: currrent ==> current
data/sga-0.10.15/src/Util/BWTCodec.h:84: currrent ==> current
data/sga-0.10.15/src/Util/BitVector.h:8: guarentee ==> guarantee
data/sga-0.10.15/src/Util/BloomFilter.cpp:49: sucessfully ==> successfully
data/sga-0.10.15/src/Util/HashMap.h:7: compability ==> compatibility
data/sga-0.10.15/src/Util/HashMap.h:8: compatability ==> compatibility
data/sga-0.10.15/src/Util/KmerDistribution.h:52: multiplicty ==> multiplicity
data/sga-0.10.15/src/Util/Match.cpp:14: nd ==> and, 2nd
data/sga-0.10.15/src/Util/Match.cpp:19: nd ==> and, 2nd
data/sga-0.10.15/src/Util/Match.cpp:23: nd ==> and, 2nd
data/sga-0.10.15/src/Util/Match.cpp:28: nd ==> and, 2nd
data/sga-0.10.15/src/Util/Match.cpp:138: requies ==> requires
data/sga-0.10.15/src/Util/Match.cpp:269: nd ==> and, 2nd
data/sga-0.10.15/src/Util/Match.cpp:273: nd ==> and, 2nd
data/sga-0.10.15/src/Util/Match.cpp:277: nd ==> and, 2nd
data/sga-0.10.15/src/Util/Match.cpp:281: nd ==> and, 2nd
data/sga-0.10.15/src/Util/Match.h:20: nd ==> and, 2nd
data/sga-0.10.15/src/Util/Match.h:21: nd ==> and, 2nd
data/sga-0.10.15/src/Util/Match.h:90: nd ==> and, 2nd
data/sga-0.10.15/src/Util/Match.h:93: nd ==> and, 2nd
data/sga-0.10.15/src/Util/MultiAlignment.cpp:227: Substract ==> Subtract
data/sga-0.10.15/src/Util/MultiAlignment.cpp:227: charcters ==> characters
data/sga-0.10.15/src/Util/MultiOverlap.cpp:602: nd ==> and, 2nd
data/sga-0.10.15/src/Util/MultiOverlap.cpp:603: nd ==> and, 2nd
data/sga-0.10.15/src/Util/MultiOverlap.cpp:605: nd ==> and, 2nd
data/sga-0.10.15/src/Util/MultiOverlap.cpp:678: guarenteed ==> guaranteed
data/sga-0.10.15/src/Util/NoCodec.h:77: currrent ==> current
data/sga-0.10.15/src/Util/Pileup.cpp:64: probabilty ==> probability
data/sga-0.10.15/src/Util/Pileup.cpp:73: probabilites ==> probabilities
data/sga-0.10.15/src/Util/Util.cpp:174: trailling ==> trailing
data/sga-0.10.15/src/bin/sga-bam2de.pl:64: hist ==> heist, his
data/sga-0.10.15/src/bin/sga-bam2de.pl:69: hist ==> heist, his
data/sga-0.10.15/src/bin/sga-bam2de.pl:69: hist ==> heist, his
data/sga-0.10.15/src/bin/sga-bam2de.pl:77: hist ==> heist, his
data/sga-0.10.15/src/bin/sga-preqc-report.py:128: indicies ==> indices
data/sga-0.10.15/src/bin/sga-preqc-report.py:248: Fase ==> Faze, phase
data/sga-0.10.15/src/bin/sga-preqc-report.py:263: vlaue ==> value
data/sga-0.10.15/src/bin/sga-preqc-report.py:384: lables ==> labels
data/sga-0.10.15/src/bin/sga-preqc-report.py:384: ect ==> etc
data/sga-0.10.15/src/bin/sga-preqc-report.py:428: nin ==> inn, min, bin, nine
data/sga-0.10.15/src/bin/sga-preqc-report.py:447: nin ==> inn, min, bin, nine
data/sga-0.10.15/src/bin/sga-preqc-report.py:587: positon ==> position, positron
data/sga-0.10.15/src/bin/sga-preqc-report.py:663: hist ==> heist, his
data/sga-0.10.15/src/bin/sga-preqc-report.py:666: hist ==> heist, his
data/sga-0.10.15/src/bin/sga-preqc-report.py:667: ect ==> etc
data/sga-0.10.15/src/bin/sga-preqc-report.py:833: unrecogized ==> unrecognized
data/sga-0.10.15/src/bin/sga-joinedpe:95: consequetive ==> consecutive
data/sga-0.10.15/debian/patches/2to3.patch:137: consequetive ==> consecutive
data/sga-0.10.15/debian/patches/2to3.patch:146: consequetive ==> consecutive
data/sga-0.10.15/debian/test/ecoli_1K_1.fastq:16: AFE ==> SAFE
data/sga-0.10.15/debian/test/ecoli_1K_1.fastq:184: HGE ==> HE
data/sga-0.10.15/debian/test/ecoli_1K_1.fastq:612: DED ==> DEAD
data/sga-0.10.15/debian/test/ecoli_1K_1.fastq:876: DED ==> DEAD
data/sga-0.10.15/debian/test/ecoli_1K_1.fastq:1060: BA ==> BY, BE
data/sga-0.10.15/debian/test/ecoli_1K_1.fastq:1228: EGE ==> EDGE
data/sga-0.10.15/debian/test/ecoli_1K_1.fastq:1364: BA ==> BY, BE
data/sga-0.10.15/debian/test/ecoli_1K_1.fastq:1664: EGE ==> EDGE
data/sga-0.10.15/debian/test/ecoli_1K_1.fastq:1748: BA ==> BY, BE
data/sga-0.10.15/debian/test/ecoli_1K_1.fastq:1800: DAA ==> DATA
data/sga-0.10.15/debian/test/ecoli_1K_1.fastq:1804: EGE ==> EDGE
data/sga-0.10.15/debian/test/ecoli_1K_1.fastq:1912: EGE ==> EDGE
data/sga-0.10.15/debian/test/ecoli_1K_1.fastq:2020: BA ==> BY, BE
data/sga-0.10.15/debian/test/ecoli_1K_1.fastq:2084: DAA ==> DATA
data/sga-0.10.15/debian/test/ecoli_1K_1.fastq:2876: AFE ==> SAFE
data/sga-0.10.15/debian/test/ecoli_1K_1.fastq:2928: BA ==> BY, BE
data/sga-0.10.15/debian/test/ecoli_1K_1.fastq:2960: BA ==> BY, BE
data/sga-0.10.15/debian/test/ecoli_1K_1.fastq:3064: HGE ==> HE
data/sga-0.10.15/debian/test/ecoli_1K_1.fastq:3384: BA ==> BY, BE
data/sga-0.10.15/debian/test/ecoli_1K_1.fastq:3648: DAA ==> DATA
data/sga-0.10.15/debian/test/ecoli_1K_1.fastq:3852: HAA ==> HAS
data/sga-0.10.15/debian/test/ecoli_1K_1.fastq:3892: EGE ==> EDGE
data/sga-0.10.15/debian/test/ecoli_1K_1.fastq:4060: BA ==> BY, BE
data/sga-0.10.15/debian/test/ecoli_1K_1.fastq:4536: BA ==> BY, BE
data/sga-0.10.15/debian/test/ecoli_1K_1.fastq:4840: EDE ==> EDGE
data/sga-0.10.15/debian/test/ecoli_1K_1.fastq:4940: EGE ==> EDGE
data/sga-0.10.15/debian/test/ecoli_1K_1.fastq:5064: BA ==> BY, BE
data/sga-0.10.15/debian/test/ecoli_1K_1.fastq:5356: DAA ==> DATA
data/sga-0.10.15/debian/test/ecoli_1K_1.fastq:5704: EGE ==> EDGE
data/sga-0.10.15/debian/test/ecoli_1K_1.fastq:5932: BA ==> BY, BE
data/sga-0.10.15/debian/test/ecoli_1K_1.fastq:6448: ADDD ==> ADD
data/sga-0.10.15/debian/test/ecoli_1K_1.fastq:6448: BA ==> BY, BE
data/sga-0.10.15/debian/test/ecoli_1K_1.fastq:7096: DAA ==> DATA
data/sga-0.10.15/debian/test/ecoli_1K_1.fastq:7196: DAA ==> DATA
data/sga-0.10.15/debian/test/ecoli_1K_1.fastq:7236: BA ==> BY, BE
data/sga-0.10.15/debian/test/ecoli_1K_1.fastq:7308: DAA ==> DATA
data/sga-0.10.15/debian/test/ecoli_1K_1.fastq:7352: EDE ==> EDGE
data/sga-0.10.15/debian/test/ecoli_1K_1.fq:16: AFE ==> SAFE
data/sga-0.10.15/debian/test/ecoli_1K_1.fq:184: HGE ==> HE
data/sga-0.10.15/debian/test/ecoli_1K_1.fq:612: DED ==> DEAD
data/sga-0.10.15/debian/test/ecoli_1K_1.fq:876: DED ==> DEAD
data/sga-0.10.15/debian/test/ecoli_1K_1.fq:1060: BA ==> BY, BE
data/sga-0.10.15/debian/test/ecoli_1K_1.fq:1228: EGE ==> EDGE
data/sga-0.10.15/debian/test/ecoli_1K_1.fq:1364: BA ==> BY, BE
data/sga-0.10.15/debian/test/ecoli_1K_1.fq:1664: EGE ==> EDGE
data/sga-0.10.15/debian/test/ecoli_1K_1.fq:1748: BA ==> BY, BE
data/sga-0.10.15/debian/test/ecoli_1K_1.fq:1800: DAA ==> DATA
data/sga-0.10.15/debian/test/ecoli_1K_1.fq:1804: EGE ==> EDGE
data/sga-0.10.15/debian/test/ecoli_1K_1.fq:1912: EGE ==> EDGE
data/sga-0.10.15/debian/test/ecoli_1K_1.fq:2020: BA ==> BY, BE
data/sga-0.10.15/debian/test/ecoli_1K_1.fq:2084: DAA ==> DATA
data/sga-0.10.15/debian/test/ecoli_1K_1.fq:2876: AFE ==> SAFE
data/sga-0.10.15/debian/test/ecoli_1K_1.fq:2928: BA ==> BY, BE
data/sga-0.10.15/debian/test/ecoli_1K_1.fq:2960: BA ==> BY, BE
data/sga-0.10.15/debian/test/ecoli_1K_1.fq:3064: HGE ==> HE
data/sga-0.10.15/debian/test/ecoli_1K_1.fq:3384: BA ==> BY, BE
data/sga-0.10.15/debian/test/ecoli_1K_1.fq:3648: DAA ==> DATA
data/sga-0.10.15/debian/test/ecoli_1K_1.fq:3852: HAA ==> HAS
data/sga-0.10.15/debian/test/ecoli_1K_1.fq:3892: EGE ==> EDGE
data/sga-0.10.15/debian/test/ecoli_1K_1.fq:4060: BA ==> BY, BE
data/sga-0.10.15/debian/test/ecoli_1K_1.fq:4536: BA ==> BY, BE
data/sga-0.10.15/debian/test/ecoli_1K_1.fq:4840: EDE ==> EDGE
data/sga-0.10.15/debian/test/ecoli_1K_1.fq:4940: EGE ==> EDGE
data/sga-0.10.15/debian/test/ecoli_1K_1.fq:5064: BA ==> BY, BE
data/sga-0.10.15/debian/test/ecoli_1K_1.fq:5356: DAA ==> DATA
data/sga-0.10.15/debian/test/ecoli_1K_1.fq:5704: EGE ==> EDGE
data/sga-0.10.15/debian/test/ecoli_1K_1.fq:5932: BA ==> BY, BE
data/sga-0.10.15/debian/test/ecoli_1K_1.fq:6448: ADDD ==> ADD
data/sga-0.10.15/debian/test/ecoli_1K_1.fq:6448: BA ==> BY, BE
data/sga-0.10.15/debian/test/ecoli_1K_1.fq:7096: DAA ==> DATA
data/sga-0.10.15/debian/test/ecoli_1K_1.fq:7196: DAA ==> DATA
data/sga-0.10.15/debian/test/ecoli_1K_1.fq:7236: BA ==> BY, BE
data/sga-0.10.15/debian/test/ecoli_1K_1.fq:7308: DAA ==> DATA
data/sga-0.10.15/debian/test/ecoli_1K_1.fq:7352: EDE ==> EDGE
data/sga-0.10.15/debian/test/ecoli_1K_2.fastq:168: EGE ==> EDGE
data/sga-0.10.15/debian/test/ecoli_1K_2.fastq:640: EGE ==> EDGE
data/sga-0.10.15/debian/test/ecoli_1K_2.fastq:808: EDE ==> EDGE
data/sga-0.10.15/debian/test/ecoli_1K_2.fastq:860: BA ==> BY, BE
data/sga-0.10.15/debian/test/ecoli_1K_2.fastq:1160: HGE ==> HE
data/sga-0.10.15/debian/test/ecoli_1K_2.fastq:1292: EGE ==> EDGE
data/sga-0.10.15/debian/test/ecoli_1K_2.fastq:1300: BA ==> BY, BE
data/sga-0.10.15/debian/test/ecoli_1K_2.fastq:1412: EDE ==> EDGE
data/sga-0.10.15/debian/test/ecoli_1K_2.fastq:1940: EGE ==> EDGE
data/sga-0.10.15/debian/test/ecoli_1K_2.fastq:2000: BA ==> BY, BE
data/sga-0.10.15/debian/test/ecoli_1K_2.fastq:2348: HGE ==> HE
data/sga-0.10.15/debian/test/ecoli_1K_2.fastq:2700: ADDD ==> ADD
data/sga-0.10.15/debian/test/ecoli_1K_2.fastq:2828: BA ==> BY, BE
data/sga-0.10.15/debian/test/ecoli_1K_2.fastq:2928: BA ==> BY, BE
data/sga-0.10.15/debian/test/ecoli_1K_2.fastq:3024: EAHC ==> EACH
data/sga-0.10.15/debian/test/ecoli_1K_2.fastq:3244: EGE ==> EDGE
data/sga-0.10.15/debian/test/ecoli_1K_2.fastq:3292: EDE ==> EDGE
data/sga-0.10.15/debian/test/ecoli_1K_2.fastq:3328: BA ==> BY, BE
data/sga-0.10.15/debian/test/ecoli_1K_2.fastq:3640: BA ==> BY, BE
data/sga-0.10.15/debian/test/ecoli_1K_2.fastq:4336: EGE ==> EDGE
data/sga-0.10.15/debian/test/ecoli_1K_2.fastq:4488: BA ==> BY, BE
data/sga-0.10.15/debian/test/ecoli_1K_2.fastq:4580: BA ==> BY, BE
data/sga-0.10.15/debian/test/ecoli_1K_2.fastq:4860: BA ==> BY, BE
data/sga-0.10.15/debian/test/ecoli_1K_2.fastq:6132: EGE ==> EDGE
data/sga-0.10.15/debian/test/ecoli_1K_2.fastq:6208: BA ==> BY, BE
data/sga-0.10.15/debian/test/ecoli_1K_2.fastq:7024: BA ==> BY, BE
data/sga-0.10.15/debian/test/ecoli_1K_2.fastq:7060: BA ==> BY, BE
data/sga-0.10.15/debian/test/ecoli_1K_2.fastq:7088: BA ==> BY, BE
data/sga-0.10.15/debian/test/ecoli_1K_2.fastq:7124: BA ==> BY, BE
data/sga-0.10.15/debian/test/ecoli_1K_2.fastq:8056: HAA ==> HAS
data/sga-0.10.15/debian/test/ecoli_1K_2.fastq:8100: BA ==> BY, BE
data/sga-0.10.15/debian/test/ecoli_1K_2.fastq:8124: BA ==> BY, BE
data/sga-0.10.15/debian/test/ecoli_1K_2.fq:168: EGE ==> EDGE
data/sga-0.10.15/debian/test/ecoli_1K_2.fq:640: EGE ==> EDGE
data/sga-0.10.15/debian/test/ecoli_1K_2.fq:808: EDE ==> EDGE
data/sga-0.10.15/debian/test/ecoli_1K_2.fq:860: BA ==> BY, BE
data/sga-0.10.15/debian/test/ecoli_1K_2.fq:1160: HGE ==> HE
data/sga-0.10.15/debian/test/ecoli_1K_2.fq:1292: EGE ==> EDGE
data/sga-0.10.15/debian/test/ecoli_1K_2.fq:1300: BA ==> BY, BE
data/sga-0.10.15/debian/test/ecoli_1K_2.fq:1412: EDE ==> EDGE
data/sga-0.10.15/debian/test/ecoli_1K_2.fq:1940: EGE ==> EDGE
data/sga-0.10.15/debian/test/ecoli_1K_2.fq:2000: BA ==> BY, BE
data/sga-0.10.15/debian/test/ecoli_1K_2.fq:2348: HGE ==> HE
data/sga-0.10.15/debian/test/ecoli_1K_2.fq:2700: ADDD ==> ADD
data/sga-0.10.15/debian/test/ecoli_1K_2.fq:2828: BA ==> BY, BE
data/sga-0.10.15/debian/test/ecoli_1K_2.fq:2928: BA ==> BY, BE
data/sga-0.10.15/debian/test/ecoli_1K_2.fq:3024: EAHC ==> EACH
data/sga-0.10.15/debian/test/ecoli_1K_2.fq:3244: EGE ==> EDGE
data/sga-0.10.15/debian/test/ecoli_1K_2.fq:3292: EDE ==> EDGE
data/sga-0.10.15/debian/test/ecoli_1K_2.fq:3328: BA ==> BY, BE
data/sga-0.10.15/debian/test/ecoli_1K_2.fq:3640: BA ==> BY, BE
data/sga-0.10.15/debian/test/ecoli_1K_2.fq:4336: EGE ==> EDGE
data/sga-0.10.15/debian/test/ecoli_1K_2.fq:4488: BA ==> BY, BE
data/sga-0.10.15/debian/test/ecoli_1K_2.fq:4580: BA ==> BY, BE
data/sga-0.10.15/debian/test/ecoli_1K_2.fq:4860: BA ==> BY, BE
data/sga-0.10.15/debian/test/ecoli_1K_2.fq:6132: EGE ==> EDGE
data/sga-0.10.15/debian/test/ecoli_1K_2.fq:6208: BA ==> BY, BE
data/sga-0.10.15/debian/test/ecoli_1K_2.fq:7024: BA ==> BY, BE
data/sga-0.10.15/debian/test/ecoli_1K_2.fq:7060: BA ==> BY, BE
data/sga-0.10.15/debian/test/ecoli_1K_2.fq:7088: BA ==> BY, BE
data/sga-0.10.15/debian/test/ecoli_1K_2.fq:7124: BA ==> BY, BE
data/sga-0.10.15/debian/test/ecoli_1K_2.fq:8056: HAA ==> HAS
data/sga-0.10.15/debian/test/ecoli_1K_2.fq:8100: BA ==> BY, BE
data/sga-0.10.15/debian/test/ecoli_1K_2.fq:8124: BA ==> BY, BE
data/sga-0.10.15/.pc/0002-no-rpath.patch/src/configure.ac:21: clock_getttime ==> clock_gettime
data/sga-0.10.15/.pc/0004-Add-help-to-sga-bam2de.pl.patch/src/bin/sga-bam2de.pl:57: hist ==> heist, his
data/sga-0.10.15/.pc/0004-Add-help-to-sga-bam2de.pl.patch/src/bin/sga-bam2de.pl:62: hist ==> heist, his
data/sga-0.10.15/.pc/0004-Add-help-to-sga-bam2de.pl.patch/src/bin/sga-bam2de.pl:62: hist ==> heist, his
data/sga-0.10.15/.pc/0004-Add-help-to-sga-bam2de.pl.patch/src/bin/sga-bam2de.pl:70: hist ==> heist, his
data/sga-0.10.15/.pc/gcc-7.patch/src/Algorithm/GapFillProcess.cpp:163: successfull ==> successful
data/sga-0.10.15/.pc/2to3.patch/src/bin/sga-preqc-report.py:128: indicies ==> indices
data/sga-0.10.15/.pc/2to3.patch/src/bin/sga-preqc-report.py:248: Fase ==> Faze, phase
data/sga-0.10.15/.pc/2to3.patch/src/bin/sga-preqc-report.py:263: vlaue ==> value
data/sga-0.10.15/.pc/2to3.patch/src/bin/sga-preqc-report.py:384: lables ==> labels
data/sga-0.10.15/.pc/2to3.patch/src/bin/sga-preqc-report.py:384: ect ==> etc
data/sga-0.10.15/.pc/2to3.patch/src/bin/sga-preqc-report.py:428: nin ==> inn, min, bin, nine
data/sga-0.10.15/.pc/2to3.patch/src/bin/sga-preqc-report.py:447: nin ==> inn, min, bin, nine
data/sga-0.10.15/.pc/2to3.patch/src/bin/sga-preqc-report.py:587: positon ==> position, positron
data/sga-0.10.15/.pc/2to3.patch/src/bin/sga-preqc-report.py:663: hist ==> heist, his
data/sga-0.10.15/.pc/2to3.patch/src/bin/sga-preqc-report.py:666: hist ==> heist, his
data/sga-0.10.15/.pc/2to3.patch/src/bin/sga-preqc-report.py:667: ect ==> etc
data/sga-0.10.15/.pc/2to3.patch/src/bin/sga-preqc-report.py:833: unrecogized ==> unrecognized
data/sga-0.10.15/.pc/2to3.patch/src/bin/sga-joinedpe:95: consequetive ==> consecutive
data/sga-0.10.15/.pc/no_enforcing_c++98.patch/src/configure.ac:21: clock_getttime ==> clock_gettime
data/sga-0.10.15/.pc/gcc9.patch/src/SGA/rmdup.cpp:158: processsed ==> processed