data/sniffles-1.0.12b+ds/src/Alignment.cpp:1064: TOOD ==> TODO
data/sniffles-1.0.12b+ds/src/Alignment.cpp:1204: postion ==> position
data/sniffles-1.0.12b+ds/src/Alignment.h:17: Paramer ==> Parameter
data/sniffles-1.0.12b+ds/src/Paramer.h:2: Paramer ==> Parameter
data/sniffles-1.0.12b+ds/src/Sniffles.cpp:9: Paramer ==> Parameter
data/sniffles-1.0.12b+ds/src/Sniffles.cpp:30: beginnig ==> beginning
data/sniffles-1.0.12b+ds/src/Sniffles.cpp:75: seperated ==> separated
data/sniffles-1.0.12b+ds/src/Sniffles.cpp:190: debuging ==> debugging
data/sniffles-1.0.12b+ds/src/Genotyper/Genotyper.cpp:32: TOOD ==> TODO
data/sniffles-1.0.12b+ds/src/Genotyper/Genotyper.cpp:227: tRead ==> thread, treat
data/sniffles-1.0.12b+ds/src/Genotyper/Genotyper.cpp:416: refrence ==> reference
data/sniffles-1.0.12b+ds/src/Genotyper/Genotyper.cpp:764: tRead ==> thread, treat
data/sniffles-1.0.12b+ds/src/Genotyper/Genotyper.h:10: Paramer ==> Parameter
data/sniffles-1.0.12b+ds/src/cluster/Cluster_SVs.cpp:58: colum ==> column
data/sniffles-1.0.12b+ds/src/cluster/Cluster_SVs.cpp:129: smalles ==> smallest
data/sniffles-1.0.12b+ds/src/cluster/Cluster_SVs.cpp:129: colum ==> column
data/sniffles-1.0.12b+ds/src/cluster/Cluster_SVs.h:16: Paramer ==> Parameter
data/sniffles-1.0.12b+ds/src/force_calling/Force_calling.h:19: Paramer ==> Parameter
data/sniffles-1.0.12b+ds/src/force_calling/VCF_parser.cpp:229: TOOD ==> TODO
data/sniffles-1.0.12b+ds/src/plane-sweep/PlaneSweep_slim.h:14: Paramer ==> Parameter
data/sniffles-1.0.12b+ds/src/print/IPrinter.h:43: positons ==> positions, positrons
data/sniffles-1.0.12b+ds/src/realign/IAlignment.h:14: Ende ==> End
data/sniffles-1.0.12b+ds/src/realign/Realign.cpp:11: begining ==> beginning
data/sniffles-1.0.12b+ds/src/sub/Breakpoint.cpp:393: lenght ==> length
data/sniffles-1.0.12b+ds/src/sub/Breakpoint.h:18: Paramer ==> Parameter
data/sniffles-1.0.12b+ds/src/sub/Detect_Breakpoints.cpp:157: usefull ==> useful
data/sniffles-1.0.12b+ds/src/sub/Detect_Breakpoints.cpp:494: incase ==> in case
data/sniffles-1.0.12b+ds/src/sub/Detect_Breakpoints.h:19: Paramer ==> Parameter
data/sniffles-1.0.12b+ds/src/sub/IRegion.h:10: Paramer ==> Parameter
data/sniffles-1.0.12b+ds/src/tree/Intervall_bed.h:13: Paramer ==> Parameter
data/sniffles-1.0.12b+ds/src/tree/Leaf.h:10: Paramer ==> Parameter
data/sniffles-1.0.12b+ds/test_set/expected_output.vcf:107: accross ==> across
data/sniffles-1.0.12b+ds/test_set/expected_output.vcf:108: accross ==> across
data/sniffles-1.0.12b+ds/test_set/test.vcf:107: accross ==> across
data/sniffles-1.0.12b+ds/test_set/test.vcf:108: accross ==> across