data/stacks-2.54+dfsg/ChangeLog:18: colums ==> columns data/stacks-2.54+dfsg/ChangeLog:73: inadvertantly ==> inadvertently data/stacks-2.54+dfsg/ChangeLog:167: Feautre ==> Feature data/stacks-2.54+dfsg/ChangeLog:198: Implmented ==> Implemented data/stacks-2.54+dfsg/ChangeLog:217: paramters ==> parameters data/stacks-2.54+dfsg/ChangeLog:232: ouput ==> output data/stacks-2.54+dfsg/ChangeLog:245: dectection ==> detection data/stacks-2.54+dfsg/ChangeLog:398: AciI ==> ascii data/stacks-2.54+dfsg/ChangeLog:467: excplicitly ==> explicitly data/stacks-2.54+dfsg/ChangeLog:482: frequenct ==> frequency, frequent data/stacks-2.54+dfsg/ChangeLog:733: sligthly ==> slightly data/stacks-2.54+dfsg/ChangeLog:797: ouput ==> output data/stacks-2.54+dfsg/ChangeLog:798: ouput ==> output data/stacks-2.54+dfsg/ChangeLog:799: aginst ==> against data/stacks-2.54+dfsg/ChangeLog:800: ouput ==> output data/stacks-2.54+dfsg/ChangeLog:861: mulitple ==> multiple data/stacks-2.54+dfsg/ChangeLog:987: accomodate ==> accommodate data/stacks-2.54+dfsg/ChangeLog:1104: accomodate ==> accommodate data/stacks-2.54+dfsg/ChangeLog:1107: acheived ==> achieved data/stacks-2.54+dfsg/ChangeLog:1115: LOD ==> LOAD data/stacks-2.54+dfsg/ChangeLog:1121: propogated ==> propagated data/stacks-2.54+dfsg/ChangeLog:1125: calcuations ==> calculations data/stacks-2.54+dfsg/ChangeLog:1132: alle ==> all, alley data/stacks-2.54+dfsg/ChangeLog:1160: outputing ==> outputting data/stacks-2.54+dfsg/ChangeLog:1181: exisiting ==> existing data/stacks-2.54+dfsg/ChangeLog:1182: specifiying ==> specifying data/stacks-2.54+dfsg/ChangeLog:1200: crasher ==> crash data/stacks-2.54+dfsg/ChangeLog:1232: inadvertantly ==> inadvertently data/stacks-2.54+dfsg/ChangeLog:1383: formated ==> formatted data/stacks-2.54+dfsg/ChangeLog:1395: refernce ==> reference data/stacks-2.54+dfsg/tests/process_radtags.t:32: actaully ==> actually data/stacks-2.54+dfsg/tests/ustacks.t:57: repetative ==> repetitive data/stacks-2.54+dfsg/scripts/denovo_map.pl:140: Indentifying ==> Identifying data/stacks-2.54+dfsg/scripts/stacks-gdb:13: priviledges ==> privileges data/stacks-2.54+dfsg/src/process_radtags.cc:108: gziped ==> gzipped data/stacks-2.54+dfsg/src/process_radtags.cc:916: Outputing ==> Outputting data/stacks-2.54+dfsg/src/process_radtags.cc:1040: occurances ==> occurrences data/stacks-2.54+dfsg/src/process_radtags.cc:1424: provded ==> provided data/stacks-2.54+dfsg/src/process_radtags.cc:1425: provded ==> provided data/stacks-2.54+dfsg/src/process_radtags.cc:1427: provded ==> provided data/stacks-2.54+dfsg/src/mstack.cc:215: occurances ==> occurrences data/stacks-2.54+dfsg/src/populations.cc:164: bloc ==> block data/stacks-2.54+dfsg/src/populations.cc:166: bloc ==> block data/stacks-2.54+dfsg/src/populations.cc:265: bloc ==> block data/stacks-2.54+dfsg/src/populations.cc:293: bloc ==> block data/stacks-2.54+dfsg/src/populations.cc:298: bloc ==> block data/stacks-2.54+dfsg/src/populations.cc:299: bloc ==> block data/stacks-2.54+dfsg/src/populations.cc:301: bloc ==> block data/stacks-2.54+dfsg/src/populations.cc:302: bloc ==> block data/stacks-2.54+dfsg/src/populations.cc:311: bloc ==> block data/stacks-2.54+dfsg/src/populations.cc:313: bloc ==> block data/stacks-2.54+dfsg/src/populations.cc:318: bloc ==> block data/stacks-2.54+dfsg/src/populations.cc:326: bloc ==> block data/stacks-2.54+dfsg/src/populations.cc:339: bloc ==> block data/stacks-2.54+dfsg/src/populations.cc:340: bloc ==> block data/stacks-2.54+dfsg/src/populations.cc:341: bloc ==> block data/stacks-2.54+dfsg/src/populations.cc:353: bloc ==> block data/stacks-2.54+dfsg/src/populations.cc:354: bloc ==> block data/stacks-2.54+dfsg/src/populations.cc:357: bloc ==> block data/stacks-2.54+dfsg/src/populations.cc:358: bloc ==> block data/stacks-2.54+dfsg/src/populations.cc:367: bloc ==> block data/stacks-2.54+dfsg/src/populations.cc:373: bloc ==> block data/stacks-2.54+dfsg/src/populations.cc:376: bloc ==> block data/stacks-2.54+dfsg/src/populations.cc:377: bloc ==> block data/stacks-2.54+dfsg/src/populations.cc:378: bloc ==> block data/stacks-2.54+dfsg/src/populations.cc:395: bloc ==> block data/stacks-2.54+dfsg/src/populations.cc:421: bloc ==> block data/stacks-2.54+dfsg/src/populations.cc:431: bloc ==> block data/stacks-2.54+dfsg/src/populations.cc:592: trucated ==> truncated data/stacks-2.54+dfsg/src/populations.cc:1450: abundancies ==> abundances data/stacks-2.54+dfsg/src/populations.cc:1628: merget ==> merge data/stacks-2.54+dfsg/src/populations.cc:1901: sinlge ==> single data/stacks-2.54+dfsg/src/populations.cc:3051: Bootsrap ==> Bootstrap data/stacks-2.54+dfsg/src/populations.cc:3208: Bootsrap ==> Bootstrap data/stacks-2.54+dfsg/src/populations.cc:4108: overlaping ==> overlapping data/stacks-2.54+dfsg/src/populations.cc:4135: ouput ==> output data/stacks-2.54+dfsg/src/populations.cc:4177: boostrap ==> bootstrap data/stacks-2.54+dfsg/src/populations.cc:4179: boostrap ==> bootstrap data/stacks-2.54+dfsg/src/populations.cc:4180: boostrap ==> bootstrap data/stacks-2.54+dfsg/src/populations.cc:4181: boostrap ==> bootstrap data/stacks-2.54+dfsg/src/populations.cc:4182: boostrap ==> bootstrap data/stacks-2.54+dfsg/src/populations.cc:4200: useable ==> usable data/stacks-2.54+dfsg/src/populations.cc:4209: messsage ==> message data/stacks-2.54+dfsg/src/export_formats.cc:437: LOD ==> LOAD data/stacks-2.54+dfsg/src/export_formats.cc:533: lod ==> load data/stacks-2.54+dfsg/src/PopSum.cc:810: occured ==> occurred data/stacks-2.54+dfsg/src/PopSum.cc:1441: lod ==> load data/stacks-2.54+dfsg/src/PopSum.cc:1576: occurences ==> occurrences data/stacks-2.54+dfsg/src/PopSum.cc:1673: withing ==> within data/stacks-2.54+dfsg/src/PopSum.cc:2058: occurences ==> occurrences data/stacks-2.54+dfsg/src/PopSum.cc:2135: occurences ==> occurrences data/stacks-2.54+dfsg/src/renz.cc:9: aciI ==> ascii data/stacks-2.54+dfsg/src/renz.cc:9: AciI ==> ascii data/stacks-2.54+dfsg/src/renz.cc:177: aciI ==> ascii data/stacks-2.54+dfsg/src/renz.cc:177: aciI ==> ascii data/stacks-2.54+dfsg/src/renz.cc:177: AciI ==> ascii data/stacks-2.54+dfsg/src/renz.cc:234: aciI ==> ascii data/stacks-2.54+dfsg/src/renz.cc:291: aciI ==> ascii data/stacks-2.54+dfsg/src/clean.cc:22: seqeunce ==> sequence data/stacks-2.54+dfsg/src/clean.cc:618: occurance ==> occurrence data/stacks-2.54+dfsg/src/ustacks.cc:461: occured ==> occurred data/stacks-2.54+dfsg/src/ustacks.cc:462: sufficent ==> sufficient data/stacks-2.54+dfsg/src/ustacks.cc:571: occurances ==> occurrences data/stacks-2.54+dfsg/src/ustacks.cc:742: occurances ==> occurrences data/stacks-2.54+dfsg/src/ustacks.cc:909: occurances ==> occurrences data/stacks-2.54+dfsg/src/ustacks.cc:1237: occurances ==> occurrences data/stacks-2.54+dfsg/src/ustacks.cc:1380: occurances ==> occurrences data/stacks-2.54+dfsg/src/ustacks.cc:2078: occurances ==> occurrences data/stacks-2.54+dfsg/src/ustacks.cc:2111: alignmnet ==> alignment data/stacks-2.54+dfsg/src/ustacks.cc:2323: alle ==> all, alley data/stacks-2.54+dfsg/src/ustacks.cc:2340: alle ==> all, alley data/stacks-2.54+dfsg/src/ustacks.cc:2449: alle ==> all, alley data/stacks-2.54+dfsg/src/ustacks.cc:2453: alle ==> all, alley data/stacks-2.54+dfsg/src/ustacks.cc:2465: alle ==> all, alley data/stacks-2.54+dfsg/src/ustacks.cc:2469: alle ==> all, alley data/stacks-2.54+dfsg/src/ustacks.cc:2970: extention ==> extension data/stacks-2.54+dfsg/src/ustacks.cc:3036: preform ==> perform data/stacks-2.54+dfsg/src/ustacks.cc:3047: messsage ==> message data/stacks-2.54+dfsg/src/bootstrap.h:143: Bootsrap ==> Bootstrap data/stacks-2.54+dfsg/src/bootstrap.h:173: Cacluate ==> Calculate data/stacks-2.54+dfsg/src/bootstrap.h:265: Bootsrap ==> Bootstrap data/stacks-2.54+dfsg/src/bootstrap.h:295: Cacluate ==> Calculate data/stacks-2.54+dfsg/src/clone_filter.cc:74: gziped ==> gzipped data/stacks-2.54+dfsg/src/clone_filter.cc:640: seqeunce ==> sequence data/stacks-2.54+dfsg/src/clone_filter.cc:948: seqeunce ==> sequence data/stacks-2.54+dfsg/src/clone_filter.cc:1303: messsage ==> message data/stacks-2.54+dfsg/src/clone_filter.cc:1310: provded ==> provided data/stacks-2.54+dfsg/src/clone_filter.cc:1311: provded ==> provided data/stacks-2.54+dfsg/src/clone_filter.cc:1313: provded ==> provided data/stacks-2.54+dfsg/src/PopSum.h:139: lod ==> load data/stacks-2.54+dfsg/src/PopSum.h:154: lod ==> load data/stacks-2.54+dfsg/src/kmers.cc:482: occured ==> occurred data/stacks-2.54+dfsg/src/kmers.cc:488: occured ==> occurred data/stacks-2.54+dfsg/src/mapping_utils.cc:216: requries ==> requires data/stacks-2.54+dfsg/src/mapping_utils.cc:377: Assinging ==> Assigning data/stacks-2.54+dfsg/src/mapping_utils.cc:402: Assinging ==> Assigning data/stacks-2.54+dfsg/src/gstacks.cc:447: successfuly ==> successfully data/stacks-2.54+dfsg/src/gstacks.cc:1056: foward ==> forward data/stacks-2.54+dfsg/src/gstacks.cc:1316: alignmnet ==> alignment data/stacks-2.54+dfsg/src/gstacks.cc:1501: alignmnet ==> alignment data/stacks-2.54+dfsg/src/gstacks.cc:1648: contruction ==> construction data/stacks-2.54+dfsg/src/gstacks.cc:2764: containg ==> containing data/stacks-2.54+dfsg/src/genotype_dictionaries.cc:227: ba ==> by, be data/stacks-2.54+dfsg/src/kmer_filter.cc:1014: formated ==> formatted data/stacks-2.54+dfsg/src/kmer_filter.cc:1511: Outputing ==> Outputting data/stacks-2.54+dfsg/src/kmer_filter.cc:1819: messsage ==> message data/stacks-2.54+dfsg/src/kmer_filter.cc:1826: occuring ==> occurring data/stacks-2.54+dfsg/src/Seq.cc:112: trucates ==> truncates data/stacks-2.54+dfsg/src/populations.h:64: merget ==> merge data/stacks-2.54+dfsg/src/populations.h:342: merget ==> merge data/stacks-2.54+dfsg/src/phasedstacks.cc:827: occurence ==> occurrence data/stacks-2.54+dfsg/src/phasedstacks.cc:1100: occurences ==> occurrences data/stacks-2.54+dfsg/src/phasedstacks.cc:1132: occurences ==> occurrences data/stacks-2.54+dfsg/src/phasedstacks.cc:1741: formated ==> formatted data/stacks-2.54+dfsg/src/phasedstacks.cc:1748: formated ==> formatted data/stacks-2.54+dfsg/src/phasedstacks.cc:1956: messsage ==> message data/stacks-2.54+dfsg/src/process_shortreads.cc:94: gziped ==> gzipped data/stacks-2.54+dfsg/src/process_shortreads.cc:684: Outputing ==> Outputting data/stacks-2.54+dfsg/src/process_shortreads.cc:804: occurances ==> occurrences data/stacks-2.54+dfsg/src/process_shortreads.cc:1146: messsage ==> message data/stacks-2.54+dfsg/src/process_shortreads.cc:1149: provded ==> provided data/stacks-2.54+dfsg/src/process_shortreads.cc:1150: provded ==> provided data/stacks-2.54+dfsg/src/process_shortreads.cc:1152: provded ==> provided data/stacks-2.54+dfsg/src/process_shortreads.cc:1168: seqeunce ==> sequence data/stacks-2.54+dfsg/src/cstacks.cc:367: postition ==> position data/stacks-2.54+dfsg/src/cstacks.cc:669: occurances ==> occurrences data/stacks-2.54+dfsg/src/cstacks.cc:734: alignmnet ==> alignment data/stacks-2.54+dfsg/src/cstacks.cc:840: occurances ==> occurrences data/stacks-2.54+dfsg/src/cstacks.cc:1063: alle ==> all, alley data/stacks-2.54+dfsg/src/cstacks.cc:1092: alle ==> all, alley data/stacks-2.54+dfsg/src/cstacks.cc:1095: alle ==> all, alley data/stacks-2.54+dfsg/src/cstacks.cc:1118: alle ==> all, alley data/stacks-2.54+dfsg/src/cstacks.cc:1127: alle ==> all, alley data/stacks-2.54+dfsg/src/cstacks.cc:1142: alle ==> all, alley data/stacks-2.54+dfsg/src/cstacks.cc:1152: alle ==> all, alley data/stacks-2.54+dfsg/src/cstacks.cc:1753: entires ==> entries data/stacks-2.54+dfsg/src/cstacks.cc:1784: entires ==> entries data/stacks-2.54+dfsg/src/Vcf.cc:253: lik ==> like, lick, link data/stacks-2.54+dfsg/src/Vcf.cc:256: lik ==> like, lick, link data/stacks-2.54+dfsg/src/Vcf.cc:257: lik ==> like, lick, link data/stacks-2.54+dfsg/src/sstacks.cc:22: occurances ==> occurrences data/stacks-2.54+dfsg/src/sstacks.cc:705: correspondance ==> correspondence data/stacks-2.54+dfsg/src/sstacks.cc:851: occurances ==> occurrences data/stacks-2.54+dfsg/src/sstacks.cc:1018: asign ==> assign data/stacks-2.54+dfsg/src/sstacks.cc:1246: Outputing ==> Outputting data/stacks-2.54+dfsg/src/Hwp.cc:156: transistion ==> transition data/stacks-2.54+dfsg/src/BamI.cc:369: occured ==> occurred data/stacks-2.54+dfsg/src/BamI.cc:370: sufficent ==> sufficient data/stacks-2.54+dfsg/src/models.cc:75: compatiblity ==> compatibility data/stacks-2.54+dfsg/src/models.cc:666: skiping ==> skipping