data/stringtie-2.1.4+ds/README.md:178: preferrably ==> preferably
data/stringtie-2.1.4+ds/rlink.cpp:1145: elminates ==> eliminates
data/stringtie-2.1.4+ds/rlink.cpp:1346: cummulative ==> cumulative
data/stringtie-2.1.4+ds/rlink.cpp:1573: prevend ==> prevent
data/stringtie-2.1.4+ds/rlink.cpp:1577: prevend ==> prevent
data/stringtie-2.1.4+ds/rlink.cpp:1593: prevend ==> prevent
data/stringtie-2.1.4+ds/rlink.cpp:1597: prevend ==> prevent
data/stringtie-2.1.4+ds/rlink.cpp:1614: cummulative ==> cumulative
data/stringtie-2.1.4+ds/rlink.cpp:1654: prevend ==> prevent
data/stringtie-2.1.4+ds/rlink.cpp:1657: prevend ==> prevent
data/stringtie-2.1.4+ds/rlink.cpp:1679: cummulative ==> cumulative
data/stringtie-2.1.4+ds/rlink.cpp:1715: prevend ==> prevent
data/stringtie-2.1.4+ds/rlink.cpp:1718: prevend ==> prevent
data/stringtie-2.1.4+ds/rlink.cpp:1759: prevend ==> prevent
data/stringtie-2.1.4+ds/rlink.cpp:1762: prevend ==> prevent
data/stringtie-2.1.4+ds/rlink.cpp:1804: prevend ==> prevent
data/stringtie-2.1.4+ds/rlink.cpp:1808: prevend ==> prevent
data/stringtie-2.1.4+ds/rlink.cpp:4578: lentgh ==> length
data/stringtie-2.1.4+ds/rlink.cpp:5327: keept ==> kept
data/stringtie-2.1.4+ds/rlink.cpp:5337: keept ==> kept
data/stringtie-2.1.4+ds/rlink.cpp:5338: keept ==> kept
data/stringtie-2.1.4+ds/rlink.cpp:5338: keept ==> kept
data/stringtie-2.1.4+ds/rlink.cpp:5349: keept ==> kept
data/stringtie-2.1.4+ds/rlink.cpp:5349: keept ==> kept
data/stringtie-2.1.4+ds/rlink.cpp:5350: keept ==> kept
data/stringtie-2.1.4+ds/rlink.cpp:5350: keept ==> kept
data/stringtie-2.1.4+ds/rlink.cpp:5351: keept ==> kept
data/stringtie-2.1.4+ds/rlink.cpp:5355: keept ==> kept
data/stringtie-2.1.4+ds/rlink.cpp:5356: keept ==> kept
data/stringtie-2.1.4+ds/rlink.cpp:5360: keept ==> kept
data/stringtie-2.1.4+ds/rlink.cpp:5360: keept ==> kept
data/stringtie-2.1.4+ds/rlink.cpp:5370: keept ==> kept
data/stringtie-2.1.4+ds/rlink.cpp:5371: keept ==> kept
data/stringtie-2.1.4+ds/rlink.cpp:5372: keept ==> kept
data/stringtie-2.1.4+ds/rlink.cpp:5373: keept ==> kept
data/stringtie-2.1.4+ds/rlink.cpp:5373: keept ==> kept
data/stringtie-2.1.4+ds/rlink.cpp:5373: keept ==> kept
data/stringtie-2.1.4+ds/rlink.cpp:5376: keept ==> kept
data/stringtie-2.1.4+ds/rlink.cpp:5376: keept ==> kept
data/stringtie-2.1.4+ds/rlink.cpp:5379: keept ==> kept
data/stringtie-2.1.4+ds/rlink.cpp:5379: keept ==> kept
data/stringtie-2.1.4+ds/rlink.cpp:5380: keept ==> kept
data/stringtie-2.1.4+ds/rlink.cpp:5380: keept ==> kept
data/stringtie-2.1.4+ds/rlink.cpp:5380: keept ==> kept
data/stringtie-2.1.4+ds/rlink.cpp:5381: keept ==> kept
data/stringtie-2.1.4+ds/rlink.cpp:5392: keept ==> kept
data/stringtie-2.1.4+ds/rlink.cpp:5393: keept ==> kept
data/stringtie-2.1.4+ds/rlink.cpp:5393: keept ==> kept
data/stringtie-2.1.4+ds/rlink.cpp:5393: keept ==> kept
data/stringtie-2.1.4+ds/rlink.cpp:5394: keept ==> kept
data/stringtie-2.1.4+ds/rlink.cpp:5395: keept ==> kept
data/stringtie-2.1.4+ds/rlink.cpp:5396: keept ==> kept
data/stringtie-2.1.4+ds/rlink.cpp:5398: keept ==> kept
data/stringtie-2.1.4+ds/rlink.cpp:5564: enque ==> enqueue
data/stringtie-2.1.4+ds/rlink.cpp:5577: enque ==> enqueue
data/stringtie-2.1.4+ds/rlink.cpp:5678: possiblities ==> possibilities
data/stringtie-2.1.4+ds/rlink.cpp:5709: possiblities ==> possibilities
data/stringtie-2.1.4+ds/rlink.cpp:5901: extentions ==> extensions
data/stringtie-2.1.4+ds/rlink.cpp:7525: possiblec ==> possible
data/stringtie-2.1.4+ds/rlink.cpp:7555: mimimum ==> minimum
data/stringtie-2.1.4+ds/rlink.cpp:7558: possiblec ==> possible
data/stringtie-2.1.4+ds/rlink.cpp:7558: possiblec ==> possible
data/stringtie-2.1.4+ds/rlink.cpp:7577: possiblec ==> possible
data/stringtie-2.1.4+ds/rlink.cpp:7590: possiblec ==> possible
data/stringtie-2.1.4+ds/rlink.cpp:7591: possiblec ==> possible
data/stringtie-2.1.4+ds/rlink.cpp:7594: possiblec ==> possible
data/stringtie-2.1.4+ds/rlink.cpp:7601: possiblec ==> possible
data/stringtie-2.1.4+ds/rlink.cpp:7674: enque ==> enqueue
data/stringtie-2.1.4+ds/rlink.cpp:7686: enque ==> enqueue
data/stringtie-2.1.4+ds/rlink.cpp:8892: trough ==> through
data/stringtie-2.1.4+ds/rlink.cpp:9328: cummulative ==> cumulative
data/stringtie-2.1.4+ds/rlink.cpp:9342: cummulative ==> cumulative
data/stringtie-2.1.4+ds/rlink.cpp:10577: cummulative ==> cumulative
data/stringtie-2.1.4+ds/rlink.cpp:10583: cummulative ==> cumulative
data/stringtie-2.1.4+ds/rlink.cpp:10605: wih ==> with
data/stringtie-2.1.4+ds/rlink.cpp:10655: cummulative ==> cumulative
data/stringtie-2.1.4+ds/rlink.cpp:10659: cummulative ==> cumulative
data/stringtie-2.1.4+ds/rlink.cpp:10677: wih ==> with
data/stringtie-2.1.4+ds/rlink.cpp:11215: asign ==> assign
data/stringtie-2.1.4+ds/rlink.cpp:11216: allready ==> already, all ready
data/stringtie-2.1.4+ds/rlink.cpp:11708: cummulative ==> cumulative
data/stringtie-2.1.4+ds/rlink.cpp:11728: assumming ==> assuming
data/stringtie-2.1.4+ds/rlink.cpp:11748: assumming ==> assuming
data/stringtie-2.1.4+ds/rlink.cpp:11831: remebers ==> remembers
data/stringtie-2.1.4+ds/rlink.cpp:12071: elminated ==> eliminated
data/stringtie-2.1.4+ds/rlink.cpp:12089: elminated ==> eliminated
data/stringtie-2.1.4+ds/rlink.cpp:12601: begining ==> beginning
data/stringtie-2.1.4+ds/rlink.cpp:13087: nd ==> and, 2nd
data/stringtie-2.1.4+ds/rlink.cpp:13087: nd ==> and, 2nd
data/stringtie-2.1.4+ds/rlink.cpp:13087: nd ==> and, 2nd
data/stringtie-2.1.4+ds/rlink.cpp:13088: nd ==> and, 2nd
data/stringtie-2.1.4+ds/rlink.cpp:13088: nd ==> and, 2nd
data/stringtie-2.1.4+ds/rlink.cpp:13088: nd ==> and, 2nd
data/stringtie-2.1.4+ds/rlink.cpp:13368: loosing ==> losing
data/stringtie-2.1.4+ds/rlink.cpp:13372: remebers ==> remembers
data/stringtie-2.1.4+ds/rlink.cpp:13481: begining ==> beginning
data/stringtie-2.1.4+ds/rlink.cpp:13850: nd ==> and, 2nd
data/stringtie-2.1.4+ds/rlink.cpp:13850: nd ==> and, 2nd
data/stringtie-2.1.4+ds/rlink.cpp:13850: nd ==> and, 2nd
data/stringtie-2.1.4+ds/rlink.cpp:13851: nd ==> and, 2nd
data/stringtie-2.1.4+ds/rlink.cpp:13851: nd ==> and, 2nd
data/stringtie-2.1.4+ds/rlink.cpp:13851: nd ==> and, 2nd
data/stringtie-2.1.4+ds/rlink.cpp:14689: startin ==> starting
data/stringtie-2.1.4+ds/rlink.cpp:15384: tollerance ==> tolerance
data/stringtie-2.1.4+ds/rlink.cpp:15759: overlaped ==> overlapped
data/stringtie-2.1.4+ds/rlink.cpp:16151: cummulative ==> cumulative
data/stringtie-2.1.4+ds/rlink.cpp:16703: cummulative ==> cumulative
data/stringtie-2.1.4+ds/rlink.cpp:16760: cummulative ==> cumulative
data/stringtie-2.1.4+ds/rlink.h:137: infering ==> inferring
data/stringtie-2.1.4+ds/rlink.h:180: indeces ==> indices
data/stringtie-2.1.4+ds/rlink.h:356: unkown ==> unknown
data/stringtie-2.1.4+ds/rlink.h:362: indeces ==> indices
data/stringtie-2.1.4+ds/rlink.h:374: contructor ==> constructor
data/stringtie-2.1.4+ds/rlink.h:650: inteligent ==> intelligent
data/stringtie-2.1.4+ds/stringtie.cpp:155: arround ==> around
data/stringtie-2.1.4+ds/stringtie.cpp:769: thi ==> the, this
data/stringtie-2.1.4+ds/gclib/gff.h:37: unitialized ==> uninitialized
data/stringtie-2.1.4+ds/gclib/gff.h:807: anid ==> and
data/stringtie-2.1.4+ds/gclib/gff.h:817: anid ==> and
data/stringtie-2.1.4+ds/gclib/gff.h:817: anid ==> and
data/stringtie-2.1.4+ds/gclib/GStr.cpp:750: coresponding ==> corresponding
data/stringtie-2.1.4+ds/gclib/GStr.cpp:793: occurences ==> occurrences
data/stringtie-2.1.4+ds/gclib/GStr.cpp:820: occurences ==> occurrences
data/stringtie-2.1.4+ds/gclib/GStr.cpp:1453: occurence ==> occurrence
data/stringtie-2.1.4+ds/gclib/GStr.cpp:1466: occurences ==> occurrences
data/stringtie-2.1.4+ds/gclib/GBase.cpp:376: occurence ==> occurrence
data/stringtie-2.1.4+ds/gclib/GBase.h:139: Abolute ==> Absolute
data/stringtie-2.1.4+ds/gclib/GBase.h:262: occurence ==> occurrence
data/stringtie-2.1.4+ds/gclib/gff.cpp:697: alwasys ==> always
data/stringtie-2.1.4+ds/gclib/gff.cpp:996: enew ==> new
data/stringtie-2.1.4+ds/gclib/gff.cpp:997: enew ==> new
data/stringtie-2.1.4+ds/gclib/gff.cpp:1000: enew ==> new
data/stringtie-2.1.4+ds/gclib/gff.cpp:2636: prevend ==> prevent
data/stringtie-2.1.4+ds/gclib/gff.cpp:2643: prevend ==> prevent
data/stringtie-2.1.4+ds/gclib/gff.cpp:3202: overlaping ==> overlapping
data/stringtie-2.1.4+ds/gclib/GStr.h:75: occurence ==> occurrence
data/stringtie-2.1.4+ds/gclib/GStr.h:111: occurences ==> occurrences
data/stringtie-2.1.4+ds/debian-tests-data/short_reads_and_superreads.sam:76: BA ==> BY, BE
data/stringtie-2.1.4+ds/debian-tests-data/short_reads_and_superreads.sam:234: EAHC ==> EACH
data/stringtie-2.1.4+ds/debian-tests-data/short_reads_and_superreads.sam:242: BA ==> BY, BE
data/stringtie-2.1.4+ds/debian-tests-data/short_reads_and_superreads.sam:319: BA ==> BY, BE
data/stringtie-2.1.4+ds/debian-tests-data/short_reads_and_superreads.sam:388: BA ==> BY, BE
data/stringtie-2.1.4+ds/debian-tests-data/short_reads_and_superreads.sam:392: ADDD ==> ADD
data/stringtie-2.1.4+ds/debian-tests-data/short_reads_and_superreads.sam:435: DED ==> DEAD
data/stringtie-2.1.4+ds/debian-tests-data/short_reads_and_superreads.sam:480: BA ==> BY, BE
data/stringtie-2.1.4+ds/debian-tests-data/short_reads_and_superreads.sam:512: BA ==> BY, BE
data/stringtie-2.1.4+ds/debian-tests-data/short_reads_and_superreads.sam:538: BA ==> BY, BE
data/stringtie-2.1.4+ds/debian-tests-data/short_reads_and_superreads.sam:616: BA ==> BY, BE
data/stringtie-2.1.4+ds/debian-tests-data/short_reads_and_superreads.sam:659: CCHE ==> CACHE
data/stringtie-2.1.4+ds/debian-tests-data/short_reads_and_superreads.sam:694: BA ==> BY, BE
data/stringtie-2.1.4+ds/debian-tests-data/short_reads_and_superreads.sam:731: HGE ==> HE
data/stringtie-2.1.4+ds/debian-tests-data/short_reads_and_superreads.sam:749: BA ==> BY, BE
data/stringtie-2.1.4+ds/debian-tests-data/short_reads_and_superreads.sam:868: BA ==> BY, BE
data/stringtie-2.1.4+ds/debian-tests-data/short_reads_and_superreads.sam:954: BA ==> BY, BE
data/stringtie-2.1.4+ds/debian-tests-data/short_reads_and_superreads.sam:1211: BA ==> BY, BE
data/stringtie-2.1.4+ds/debian-tests-data/short_reads_and_superreads.sam:1232: BA ==> BY, BE
data/stringtie-2.1.4+ds/debian-tests-data/short_reads_and_superreads.sam:1250: BA ==> BY, BE
data/stringtie-2.1.4+ds/debian-tests-data/short_reads_and_superreads.sam:1428: BA ==> BY, BE
data/stringtie-2.1.4+ds/debian-tests-data/short_reads_and_superreads.sam:1438: BA ==> BY, BE
data/stringtie-2.1.4+ds/debian-tests-data/short_reads_and_superreads.sam:1455: DAA ==> DATA
data/stringtie-2.1.4+ds/debian-tests-data/short_reads_and_superreads.sam:1548: BA ==> BY, BE
data/stringtie-2.1.4+ds/debian-tests-data/short_reads_and_superreads.sam:1568: BA ==> BY, BE
data/stringtie-2.1.4+ds/debian-tests-data/short_reads_and_superreads.sam:1657: ADDD ==> ADD
data/stringtie-2.1.4+ds/debian-tests-data/short_reads_and_superreads.sam:1665: BA ==> BY, BE
data/stringtie-2.1.4+ds/debian-tests-data/short_reads_and_superreads.sam:1730: BA ==> BY, BE
data/stringtie-2.1.4+ds/debian-tests-data/short_reads_and_superreads.sam:1794: BA ==> BY, BE
data/stringtie-2.1.4+ds/debian-tests-data/short_reads_and_superreads.sam:1811: BA ==> BY, BE
data/stringtie-2.1.4+ds/debian-tests-data/short_reads_and_superreads.sam:1872: DED ==> DEAD
data/stringtie-2.1.4+ds/debian-tests-data/short_reads_and_superreads.sam:1890: BA ==> BY, BE
data/stringtie-2.1.4+ds/debian-tests-data/short_reads_and_superreads.sam:1906: BA ==> BY, BE
data/stringtie-2.1.4+ds/debian-tests-data/short_reads_and_superreads.sam:1967: EDE ==> EDGE
data/stringtie-2.1.4+ds/debian-tests-data/short_reads_and_superreads.sam:1995: BA ==> BY, BE
data/stringtie-2.1.4+ds/debian-tests-data/short_reads_and_superreads.sam:2086: BA ==> BY, BE
data/stringtie-2.1.4+ds/debian-tests-data/short_reads_and_superreads.sam:2158: BA ==> BY, BE
data/stringtie-2.1.4+ds/debian-tests-data/short_reads_and_superreads.sam:2219: BA ==> BY, BE
data/stringtie-2.1.4+ds/debian-tests-data/short_reads_and_superreads.sam:2220: HAA ==> HAS
data/stringtie-2.1.4+ds/debian-tests-data/short_reads_and_superreads.sam:2317: BA ==> BY, BE
data/stringtie-2.1.4+ds/debian-tests-data/short_reads_and_superreads.sam:2337: BA ==> BY, BE
data/stringtie-2.1.4+ds/debian-tests-data/short_reads_and_superreads.sam:2338: BA ==> BY, BE
data/stringtie-2.1.4+ds/debian-tests-data/short_reads_and_superreads.sam:2359: CACE ==> CACHE
data/stringtie-2.1.4+ds/debian-tests-data/short_reads_and_superreads.sam:2374: BA ==> BY, BE
data/stringtie-2.1.4+ds/debian-tests-data/short_reads_and_superreads.sam:2396: BA ==> BY, BE
data/stringtie-2.1.4+ds/debian-tests-data/short_reads_and_superreads.sam:2599: BA ==> BY, BE
data/stringtie-2.1.4+ds/debian-tests-data/README.md:15: comand ==> command
data/stringtie-2.1.4+ds/debian-tests-data/short_reads.sam:72: BA ==> BY, BE
data/stringtie-2.1.4+ds/debian-tests-data/short_reads.sam:225: EAHC ==> EACH
data/stringtie-2.1.4+ds/debian-tests-data/short_reads.sam:233: BA ==> BY, BE
data/stringtie-2.1.4+ds/debian-tests-data/short_reads.sam:308: BA ==> BY, BE
data/stringtie-2.1.4+ds/debian-tests-data/short_reads.sam:374: BA ==> BY, BE
data/stringtie-2.1.4+ds/debian-tests-data/short_reads.sam:378: ADDD ==> ADD
data/stringtie-2.1.4+ds/debian-tests-data/short_reads.sam:420: DED ==> DEAD
data/stringtie-2.1.4+ds/debian-tests-data/short_reads.sam:464: BA ==> BY, BE
data/stringtie-2.1.4+ds/debian-tests-data/short_reads.sam:496: BA ==> BY, BE
data/stringtie-2.1.4+ds/debian-tests-data/short_reads.sam:522: BA ==> BY, BE
data/stringtie-2.1.4+ds/debian-tests-data/short_reads.sam:597: BA ==> BY, BE
data/stringtie-2.1.4+ds/debian-tests-data/short_reads.sam:638: CCHE ==> CACHE
data/stringtie-2.1.4+ds/debian-tests-data/short_reads.sam:673: BA ==> BY, BE
data/stringtie-2.1.4+ds/debian-tests-data/short_reads.sam:709: HGE ==> HE
data/stringtie-2.1.4+ds/debian-tests-data/short_reads.sam:727: BA ==> BY, BE
data/stringtie-2.1.4+ds/debian-tests-data/short_reads.sam:839: BA ==> BY, BE
data/stringtie-2.1.4+ds/debian-tests-data/short_reads.sam:922: BA ==> BY, BE
data/stringtie-2.1.4+ds/debian-tests-data/short_reads.sam:1169: BA ==> BY, BE
data/stringtie-2.1.4+ds/debian-tests-data/short_reads.sam:1189: BA ==> BY, BE
data/stringtie-2.1.4+ds/debian-tests-data/short_reads.sam:1207: BA ==> BY, BE
data/stringtie-2.1.4+ds/debian-tests-data/short_reads.sam:1376: BA ==> BY, BE
data/stringtie-2.1.4+ds/debian-tests-data/short_reads.sam:1385: BA ==> BY, BE
data/stringtie-2.1.4+ds/debian-tests-data/short_reads.sam:1402: DAA ==> DATA
data/stringtie-2.1.4+ds/debian-tests-data/short_reads.sam:1492: BA ==> BY, BE
data/stringtie-2.1.4+ds/debian-tests-data/short_reads.sam:1512: BA ==> BY, BE
data/stringtie-2.1.4+ds/debian-tests-data/short_reads.sam:1593: ADDD ==> ADD
data/stringtie-2.1.4+ds/debian-tests-data/short_reads.sam:1601: BA ==> BY, BE
data/stringtie-2.1.4+ds/debian-tests-data/short_reads.sam:1665: BA ==> BY, BE
data/stringtie-2.1.4+ds/debian-tests-data/short_reads.sam:1726: BA ==> BY, BE
data/stringtie-2.1.4+ds/debian-tests-data/short_reads.sam:1742: BA ==> BY, BE
data/stringtie-2.1.4+ds/debian-tests-data/short_reads.sam:1800: DED ==> DEAD
data/stringtie-2.1.4+ds/debian-tests-data/short_reads.sam:1818: BA ==> BY, BE
data/stringtie-2.1.4+ds/debian-tests-data/short_reads.sam:1833: BA ==> BY, BE
data/stringtie-2.1.4+ds/debian-tests-data/short_reads.sam:1891: EDE ==> EDGE
data/stringtie-2.1.4+ds/debian-tests-data/short_reads.sam:1918: BA ==> BY, BE
data/stringtie-2.1.4+ds/debian-tests-data/short_reads.sam:2009: BA ==> BY, BE
data/stringtie-2.1.4+ds/debian-tests-data/short_reads.sam:2079: BA ==> BY, BE
data/stringtie-2.1.4+ds/debian-tests-data/short_reads.sam:2139: BA ==> BY, BE
data/stringtie-2.1.4+ds/debian-tests-data/short_reads.sam:2140: HAA ==> HAS
data/stringtie-2.1.4+ds/debian-tests-data/short_reads.sam:2232: BA ==> BY, BE
data/stringtie-2.1.4+ds/debian-tests-data/short_reads.sam:2252: BA ==> BY, BE
data/stringtie-2.1.4+ds/debian-tests-data/short_reads.sam:2253: BA ==> BY, BE
data/stringtie-2.1.4+ds/debian-tests-data/short_reads.sam:2274: CACE ==> CACHE
data/stringtie-2.1.4+ds/debian-tests-data/short_reads.sam:2288: BA ==> BY, BE
data/stringtie-2.1.4+ds/debian-tests-data/short_reads.sam:2308: BA ==> BY, BE
data/stringtie-2.1.4+ds/debian-tests-data/short_reads.sam:2491: BA ==> BY, BE
data/stringtie-2.1.4+ds/debian/README.source:9: hist ==> heist, his