data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-A.fq:408: CACE ==> CACHE
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-A.fq:528: AADD ==> ADD
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-A.fq:668: ADDD ==> ADD
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-A.fq:1404: BA ==> BY, BE
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-A.fq:1580: DED ==> DEAD
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-A.fq:1648: BA ==> BY, BE
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-A.fq:1700: BA ==> BY, BE
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-A.fq:1708: BA ==> BY, BE
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-A.fq:1856: BA ==> BY, BE
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-A.fq:1964: BA ==> BY, BE
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-A.fq:2092: BA ==> BY, BE
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-A.fq:2260: BA ==> BY, BE
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-A.fq:2320: BA ==> BY, BE
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-A.fq:2420: BA ==> BY, BE
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-A.fq:3016: EGE ==> EDGE
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-A.fq:3784: BA ==> BY, BE
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-A.fq:3892: BA ==> BY, BE
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-A.fq:3936: BA ==> BY, BE
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-A.fq:4116: BA ==> BY, BE
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-A.fq:4172: BA ==> BY, BE
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-A.fq:4384: BA ==> BY, BE
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-A.fq:4636: BA ==> BY, BE
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-A.fq:4932: BA ==> BY, BE
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-A.fq:5472: BA ==> BY, BE
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-A.fq:5632: BA ==> BY, BE
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-A.fq:5728: BA ==> BY, BE
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-A.fq:6368: BA ==> BY, BE
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-A.fq:6388: BA ==> BY, BE
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-A.fq:6404: BA ==> BY, BE
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-A.fq:6636: BA ==> BY, BE
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-A.fq:6696: BA ==> BY, BE
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-A.fq:6752: BA ==> BY, BE
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-A.fq:6772: EDE ==> EDGE
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-A.fq:6816: BA ==> BY, BE
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-A.fq:7060: CACE ==> CACHE
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-A.fq:7248: BA ==> BY, BE
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-A.fq:7988: BA ==> BY, BE
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-A.fq:8132: BA ==> BY, BE
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-A.fq:8204: BA ==> BY, BE
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-A.fq:8448: BA ==> BY, BE
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-A.fq:8476: AADD ==> ADD
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-A.fq:8476: ADDD ==> ADD
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-A.fq:8692: BA ==> BY, BE
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-A.fq:8824: BA ==> BY, BE
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-A.fq:8964: BA ==> BY, BE
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-A.fq:9036: BA ==> BY, BE
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-A.fq:9052: ADDD ==> ADD
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-A.fq:9252: AFE ==> SAFE
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-A.fq:9464: BA ==> BY, BE
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-A.fq:9528: BA ==> BY, BE
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-A.fq:9696: BA ==> BY, BE
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-A.fq:10096: BA ==> BY, BE
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-A.fq:10608: BA ==> BY, BE
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-A.fq:10636: CHEC ==> CHECK
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-A.fq:10900: EACG ==> EACH
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-A.fq:10924: BA ==> BY, BE
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-A.fq:11048: AADD ==> ADD
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-A.fq:11492: AFE ==> SAFE
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-A.fq:11616: BA ==> BY, BE
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-A.fq:11696: BA ==> BY, BE
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-A.fq:11768: BA ==> BY, BE
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-A.fq:11896: BA ==> BY, BE
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-A.fq:12192: BA ==> BY, BE
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-A.fq:12224: DAA ==> DATA
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-A.fq:12516: BA ==> BY, BE
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-A.fq:12760: ADDD ==> ADD
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-A.fq:12900: BA ==> BY, BE
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-A.fq:13416: BA ==> BY, BE
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-A.fq:13460: DAA ==> DATA
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-A.fq:13504: BA ==> BY, BE
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-A.fq:13748: BA ==> BY, BE
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-A.fq:13752: BA ==> BY, BE
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-A.fq:13768: BA ==> BY, BE
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-A.fq:13796: BA ==> BY, BE
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-A.fq:14076: BA ==> BY, BE
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-A.fq:14548: BA ==> BY, BE
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-A.fq:14560: BA ==> BY, BE
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-A.fq:14816: BA ==> BY, BE
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-A.fq:15152: BA ==> BY, BE
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-A.fq:15184: BA ==> BY, BE
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-A.fq:15408: HGE ==> HE
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-A.fq:15548: BA ==> BY, BE
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-A.fq:16056: ADDD ==> ADD
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-A.fq:16248: DED ==> DEAD
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-A.fq:16328: BA ==> BY, BE
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-A.fq:16512: BA ==> BY, BE
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-A.fq:16800: BA ==> BY, BE
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-A.fq:17072: BA ==> BY, BE
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-A.fq:17240: BA ==> BY, BE
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-A.fq:17444: BA ==> BY, BE
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-A.fq:17584: BA ==> BY, BE
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-A.fq:17648: BA ==> BY, BE
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-A.fq:17700: ADDD ==> ADD
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-A.fq:17764: BA ==> BY, BE
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-A.fq:17772: BA ==> BY, BE
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-A.fq:17816: BA ==> BY, BE
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-A.fq:17888: DAED ==> DEAD
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-A.fq:17968: BA ==> BY, BE
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-A.fq:18016: BA ==> BY, BE
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-A.fq:18096: BA ==> BY, BE
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-A.fq:18192: BA ==> BY, BE
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-A.fq:18384: BA ==> BY, BE
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-A.fq:18508: BA ==> BY, BE
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-A.fq:18596: BA ==> BY, BE
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-A.fq:18596: EGE ==> EDGE
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-A.fq:18756: BA ==> BY, BE
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-A.fq:18756: BA ==> BY, BE
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-A.fq:18884: EGE ==> EDGE
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-A.fq:18980: BA ==> BY, BE
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-A.fq:19124: BA ==> BY, BE
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-A.fq:19132: BA ==> BY, BE
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-A.fq:19216: BA ==> BY, BE
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-A.fq:19688: AFE ==> SAFE
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-A.fq:19768: BA ==> BY, BE
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-A.fq:19924: BA ==> BY, BE
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-A.fq:19936: BA ==> BY, BE
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-A.fq:19936: BA ==> BY, BE
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-A.fq:19980: BA ==> BY, BE
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-A.fq:20024: BA ==> BY, BE
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-A.fq:20040: ADDD ==> ADD
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-A.fq:20300: BA ==> BY, BE
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-A.fq:20460: BA ==> BY, BE
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-A.fq:20744: BA ==> BY, BE
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-A.fq:20912: BA ==> BY, BE
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-A.fq:20936: BA ==> BY, BE
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-A.fq:21096: BA ==> BY, BE
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-A.fq:21144: BA ==> BY, BE
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-A.fq:21208: BA ==> BY, BE
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-A.fq:21300: BA ==> BY, BE
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-A.fq:21332: EDE ==> EDGE
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-A.fq:22016: BA ==> BY, BE
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-A.fq:22020: ADDD ==> ADD
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-A.fq:22268: BA ==> BY, BE
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-A.fq:22572: ADDD ==> ADD
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-A.fq:22580: BA ==> BY, BE
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-A.fq:23164: BA ==> BY, BE
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-A.fq:23204: DAA ==> DATA
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-A.fq:23252: BA ==> BY, BE
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-A.fq:23304: BA ==> BY, BE
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-A.fq:23356: BA ==> BY, BE
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-A.fq:23652: ADDD ==> ADD
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-A.fq:23772: BA ==> BY, BE
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-A.fq:23956: BA ==> BY, BE
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-A.fq:24080: BA ==> BY, BE
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-A.fq:24140: BA ==> BY, BE
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-A.fq:24272: HAA ==> HAS
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-A.fq:24464: BA ==> BY, BE
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-A.fq:24644: BA ==> BY, BE
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-A.fq:24748: BA ==> BY, BE
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-A.fq:24908: BA ==> BY, BE
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-A.fq:25100: BA ==> BY, BE
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-A.fq:25152: BA ==> BY, BE
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-A.fq:25780: BA ==> BY, BE
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-A.fq:25796: BA ==> BY, BE
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-A.fq:25808: DED ==> DEAD
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-A.fq:25916: BA ==> BY, BE
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-A.fq:26480: BA ==> BY, BE
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-A.fq:26588: BA ==> BY, BE
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-A.fq:26908: BA ==> BY, BE
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-A.fq:27056: BA ==> BY, BE
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-A.fq:27532: ADDD ==> ADD
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-A.fq:27612: DAA ==> DATA
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-A.fq:28004: BA ==> BY, BE
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-A.fq:28160: BA ==> BY, BE
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-A.fq:28320: BA ==> BY, BE
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-A.fq:28524: AFE ==> SAFE
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-A.fq:28640: BA ==> BY, BE
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-A.fq:28724: AADD ==> ADD
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-A.fq:28756: BA ==> BY, BE
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-A.fq:29140: BA ==> BY, BE
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-A.fq:29168: BA ==> BY, BE
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-A.fq:29260: DAA ==> DATA
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-A.fq:29384: BA ==> BY, BE
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-A.fq:29496: BA ==> BY, BE
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-A.fq:30156: BA ==> BY, BE
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-A.fq:30192: BA ==> BY, BE
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-A.fq:30244: CACE ==> CACHE
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-A.fq:30464: BA ==> BY, BE
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-A.fq:30496: BA ==> BY, BE
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-A.fq:30648: BA ==> BY, BE
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-A.fq:30680: CACE ==> CACHE
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-A.fq:30744: BA ==> BY, BE
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-A.fq:30840: EGE ==> EDGE
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-A.fq:30852: BA ==> BY, BE
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-A.fq:31132: BA ==> BY, BE
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-A.fq:31148: ADDD ==> ADD
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-A.fq:31272: BA ==> BY, BE
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-A.fq:31752: BA ==> BY, BE
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-A.fq:31772: BA ==> BY, BE
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-A.fq:31776: BA ==> BY, BE
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-A.fq:32208: BA ==> BY, BE
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-A.fq:32236: BA ==> BY, BE
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-A.fq:32500: BA ==> BY, BE
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-A.fq:32524: BA ==> BY, BE
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-A.fq:32580: BA ==> BY, BE
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-A.fq:32944: BA ==> BY, BE
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-A.fq:32992: BA ==> BY, BE
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-A.fq:33048: BA ==> BY, BE
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-A.fq:33252: BA ==> BY, BE
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-A.fq:33268: ADDD ==> ADD
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-A.fq:33608: BA ==> BY, BE
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-A.fq:33696: BA ==> BY, BE
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-A.fq:34016: BA ==> BY, BE
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-A.fq:34096: ADDD ==> ADD
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-A.fq:34204: BA ==> BY, BE
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-A.fq:34372: ADDD ==> ADD
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-A.fq:34428: AADD ==> ADD
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-A.fq:34940: AADD ==> ADD
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-A.fq:34944: BA ==> BY, BE
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-A.fq:35660: BA ==> BY, BE
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-A.fq:35780: BA ==> BY, BE
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-A.fq:35808: BA ==> BY, BE
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-A.fq:36440: AADD ==> ADD
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-A.fq:36868: BA ==> BY, BE
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-A.fq:36900: DED ==> DEAD
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-A.fq:37036: BA ==> BY, BE
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-A.fq:37388: BA ==> BY, BE
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-A.fq:37436: BA ==> BY, BE
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-A.fq:37556: BA ==> BY, BE
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-A.fq:37624: ADDD ==> ADD
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-A.fq:37752: BA ==> BY, BE
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-A.fq:37856: BA ==> BY, BE
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-A.fq:38124: BA ==> BY, BE
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-A.fq:38292: BA ==> BY, BE
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-A.fq:38428: EGE ==> EDGE
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-A.fq:38460: BA ==> BY, BE
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-A.fq:38460: BA ==> BY, BE
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-A.fq:38580: BA ==> BY, BE
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-A.fq:38604: DED ==> DEAD
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-A.fq:38684: DAED ==> DEAD
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-A.fq:38732: ADDD ==> ADD
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-A.fq:39244: AFE ==> SAFE
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-A.fq:39280: BA ==> BY, BE
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-A.fq:39296: ADDD ==> ADD
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-A.fq:39444: BA ==> BY, BE
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-A.fq:39560: BA ==> BY, BE
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-A.fq:39704: BA ==> BY, BE
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-A.fq:39832: BA ==> BY, BE
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-A.fq:39848: BA ==> BY, BE
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-A.fq:39852: BA ==> BY, BE
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-A.fq:39896: BA ==> BY, BE
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-A.fq:40036: BA ==> BY, BE
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-A.fq:40156: BA ==> BY, BE
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-A.fq:40164: BA ==> BY, BE
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-A.fq:40260: BA ==> BY, BE
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-A.fq:40304: BA ==> BY, BE
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-A.fq:40480: BA ==> BY, BE
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-A.fq:40640: AFE ==> SAFE
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-A.fq:40656: EGE ==> EDGE
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-A.fq:40684: BA ==> BY, BE
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-A.fq:40696: BA ==> BY, BE
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-A.fq:40968: BA ==> BY, BE
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-A.fq:41128: BA ==> BY, BE
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-A.fq:41160: BA ==> BY, BE
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-A.fq:41440: BA ==> BY, BE
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-A.fq:41908: BA ==> BY, BE
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-A.fq:42016: BA ==> BY, BE
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-A.fq:42568: ADDD ==> ADD
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-A.fq:42608: BA ==> BY, BE
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-A.fq:43012: BA ==> BY, BE
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-A.fq:43160: BA ==> BY, BE
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-A.fq:43732: BA ==> BY, BE
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-A.fq:43784: BA ==> BY, BE
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-A.fq:43812: BA ==> BY, BE
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-A.fq:43820: BA ==> BY, BE
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-A.fq:43828: BA ==> BY, BE
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-A.fq:44372: BA ==> BY, BE
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-A.fq:44916: BA ==> BY, BE
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-A.fq:45188: BA ==> BY, BE
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-A.fq:45280: BA ==> BY, BE
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-A.fq:45420: BA ==> BY, BE
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-A.fq:45532: BA ==> BY, BE
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-A.fq:45584: BA ==> BY, BE
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-A.fq:45740: BA ==> BY, BE
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-A.fq:45784: BA ==> BY, BE
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-A.fq:46460: BA ==> BY, BE
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-A.fq:46752: BA ==> BY, BE
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-A.fq:46776: BA ==> BY, BE
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-A.fq:46796: ADDD ==> ADD
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-A.fq:47164: BA ==> BY, BE
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-A.fq:47232: BA ==> BY, BE
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-A.fq:47424: AFE ==> SAFE
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-A.fq:47748: BA ==> BY, BE
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-A.fq:47752: BA ==> BY, BE
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-A.fq:47964: BA ==> BY, BE
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-A.fq:48200: BA ==> BY, BE
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-A.fq:48248: DED ==> DEAD
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-A.fq:48288: BA ==> BY, BE
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-A.fq:48316: BA ==> BY, BE
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-A.fq:48460: ADDD ==> ADD
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-A.fq:48508: BA ==> BY, BE
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-A.fq:48892: BA ==> BY, BE
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-A.fq:49080: BA ==> BY, BE
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-A.fq:49508: BA ==> BY, BE
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-A.fq:49608: BA ==> BY, BE
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-A.fq:49936: EGE ==> EDGE
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-A.fq:50892: BA ==> BY, BE
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-A.fq:50904: BA ==> BY, BE
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-A.fq:50904: BA ==> BY, BE
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-A.fq:51148: BA ==> BY, BE
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-A.fq:51244: AFE ==> SAFE
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-A.fq:51268: BA ==> BY, BE
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-A.fq:51688: BA ==> BY, BE
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-A.fq:52488: BA ==> BY, BE
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-A.fq:52832: BA ==> BY, BE
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-A.fq:52952: DAA ==> DATA
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-A.fq:52980: AFE ==> SAFE
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-A.fq:53680: BA ==> BY, BE
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-A.fq:53764: BA ==> BY, BE
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-A.fq:53868: BA ==> BY, BE
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-A.fq:54308: BA ==> BY, BE
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-A.fq:54316: BA ==> BY, BE
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-A.fq:54368: BA ==> BY, BE
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-A.fq:55316: BA ==> BY, BE
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-A.fq:55504: BA ==> BY, BE
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-A.fq:55896: BA ==> BY, BE
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-A.fq:56044: BA ==> BY, BE
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-A.fq:56136: BA ==> BY, BE
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-A.fq:56656: BA ==> BY, BE
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-A.fq:56664: BA ==> BY, BE
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-A.fq:56680: BA ==> BY, BE
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-A.fq:56740: EGE ==> EDGE
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-A.fq:56776: ADDD ==> ADD
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-A.fq:56828: BA ==> BY, BE
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-A.fq:56896: AADD ==> ADD
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-A.fq:57552: BA ==> BY, BE
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-A.fq:57748: BA ==> BY, BE
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-A.fq:58060: BA ==> BY, BE
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-A.fq:58132: BA ==> BY, BE
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-A.fq:58164: CHEC ==> CHECK
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-A.fq:58236: BA ==> BY, BE
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-A.fq:58448: BA ==> BY, BE
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-A.fq:59012: BA ==> BY, BE
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-A.fq:59508: BA ==> BY, BE
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-A.fq:59552: BA ==> BY, BE
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-A.fq:59628: BA ==> BY, BE
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-A.fq:59672: BA ==> BY, BE
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-A.fq:59960: AADD ==> ADD
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-A.fq:60040: CCHE ==> CACHE
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-A.fq:60084: BA ==> BY, BE
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-A.fq:61328: BA ==> BY, BE
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-A.fq:61460: BA ==> BY, BE
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-A.fq:61460: BA ==> BY, BE
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-A.fq:61636: BA ==> BY, BE
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-A.fq:61904: ADDD ==> ADD
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-A.fq:61964: BA ==> BY, BE
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-A.fq:61976: BA ==> BY, BE
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-A.fq:62056: BA ==> BY, BE
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-A.fq:62092: BA ==> BY, BE
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-A.fq:62132: BA ==> BY, BE
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-A.fq:62148: BA ==> BY, BE
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-A.fq:62152: BA ==> BY, BE
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-A.fq:62224: BA ==> BY, BE
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-A.fq:62360: BA ==> BY, BE
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-A.fq:62712: BA ==> BY, BE
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-A.fq:62728: BA ==> BY, BE
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-A.fq:62804: BA ==> BY, BE
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-A.fq:62816: ADDD ==> ADD
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-A.fq:62952: BA ==> BY, BE
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-A.fq:62968: ADDD ==> ADD
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-A.fq:63144: BA ==> BY, BE
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-A.fq:63276: BA ==> BY, BE
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-A.fq:63404: BA ==> BY, BE
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-A.fq:63424: BA ==> BY, BE
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-A.fq:63896: EACF ==> EACH
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-A.fq:63960: BA ==> BY, BE
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-A.fq:64148: BA ==> BY, BE
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-A.fq:64188: ADDD ==> ADD
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-B.fq:124: BA ==> BY, BE
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-B.fq:484: BA ==> BY, BE
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-B.fq:488: BA ==> BY, BE
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-B.fq:676: BA ==> BY, BE
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-B.fq:852: BA ==> BY, BE
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-B.fq:1428: BA ==> BY, BE
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-B.fq:1448: BA ==> BY, BE
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-B.fq:1488: ADDD ==> ADD
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-B.fq:1804: ADDD ==> ADD
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-B.fq:1820: BA ==> BY, BE
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-B.fq:1916: BA ==> BY, BE
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-B.fq:2232: BA ==> BY, BE
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-B.fq:2312: BA ==> BY, BE
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-B.fq:2320: BA ==> BY, BE
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-B.fq:2320: ADDD ==> ADD
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-B.fq:2916: BA ==> BY, BE
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-B.fq:3096: BA ==> BY, BE
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-B.fq:3412: BA ==> BY, BE
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-B.fq:3856: BA ==> BY, BE
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-B.fq:3964: ADDD ==> ADD
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-B.fq:4036: BA ==> BY, BE
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-B.fq:4040: BA ==> BY, BE
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-B.fq:4088: BA ==> BY, BE
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-B.fq:4356: DED ==> DEAD
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-B.fq:4372: BA ==> BY, BE
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-B.fq:4720: AADD ==> ADD
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-B.fq:4808: BA ==> BY, BE
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-B.fq:5000: BA ==> BY, BE
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-B.fq:5304: BA ==> BY, BE
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-B.fq:5432: ADDD ==> ADD
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-B.fq:5780: BA ==> BY, BE
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-B.fq:6200: ADDD ==> ADD
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-B.fq:6672: BA ==> BY, BE
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-B.fq:6676: BA ==> BY, BE
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-B.fq:6972: BA ==> BY, BE
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-B.fq:7224: BA ==> BY, BE
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-B.fq:7240: BA ==> BY, BE
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-B.fq:7372: BA ==> BY, BE
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-B.fq:7808: BA ==> BY, BE
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-B.fq:8160: ADDD ==> ADD
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-B.fq:8364: BA ==> BY, BE
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-B.fq:8556: BA ==> BY, BE
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-B.fq:8804: CACE ==> CACHE
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-B.fq:9000: BA ==> BY, BE
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-B.fq:9104: ADDD ==> ADD
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-B.fq:9672: BA ==> BY, BE
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-B.fq:9704: ADDD ==> ADD
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-B.fq:9912: EGE ==> EDGE
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-B.fq:9928: EDE ==> EDGE
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-B.fq:9932: BA ==> BY, BE
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-B.fq:10196: BA ==> BY, BE
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-B.fq:10340: BA ==> BY, BE
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-B.fq:10808: BA ==> BY, BE
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-B.fq:10820: BA ==> BY, BE
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-B.fq:10944: AADD ==> ADD
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-B.fq:11148: ADDD ==> ADD
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-B.fq:11636: BA ==> BY, BE
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-B.fq:11636: BA ==> BY, BE
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-B.fq:11936: BA ==> BY, BE
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-B.fq:12012: BA ==> BY, BE
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-B.fq:12080: BA ==> BY, BE
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-B.fq:12300: BA ==> BY, BE
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-B.fq:12412: DAA ==> DATA
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-B.fq:12652: BA ==> BY, BE
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-B.fq:12724: BA ==> BY, BE
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-B.fq:12768: BA ==> BY, BE
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-B.fq:12864: BA ==> BY, BE
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-B.fq:13180: BA ==> BY, BE
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-B.fq:13376: BA ==> BY, BE
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-B.fq:13516: BA ==> BY, BE
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-B.fq:13552: BA ==> BY, BE
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-B.fq:13572: BA ==> BY, BE
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-B.fq:13984: BA ==> BY, BE
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-B.fq:14136: BA ==> BY, BE
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-B.fq:14864: BA ==> BY, BE
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-B.fq:14908: DED ==> DEAD
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-B.fq:15008: ADDD ==> ADD
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-B.fq:15236: BA ==> BY, BE
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-B.fq:15304: DED ==> DEAD
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-B.fq:15520: BA ==> BY, BE
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-B.fq:15672: BA ==> BY, BE
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-B.fq:15712: BA ==> BY, BE
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-B.fq:16092: BA ==> BY, BE
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-B.fq:16976: BA ==> BY, BE
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-B.fq:17180: BA ==> BY, BE
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-B.fq:17684: BA ==> BY, BE
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-B.fq:17752: BA ==> BY, BE
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-B.fq:17760: HGE ==> HE
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-B.fq:17804: BA ==> BY, BE
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-B.fq:17812: EDE ==> EDGE
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-B.fq:17828: BA ==> BY, BE
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-B.fq:17832: BA ==> BY, BE
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-B.fq:17912: BA ==> BY, BE
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-B.fq:18004: BA ==> BY, BE
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-B.fq:18076: BA ==> BY, BE
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-B.fq:18080: BA ==> BY, BE
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-B.fq:18092: BA ==> BY, BE
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-B.fq:18228: BA ==> BY, BE
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-B.fq:18292: ADDD ==> ADD
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-B.fq:18440: BA ==> BY, BE
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-B.fq:18664: BA ==> BY, BE
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-B.fq:18744: EDE ==> EDGE
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-B.fq:18748: BA ==> BY, BE
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-B.fq:18808: BA ==> BY, BE
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-B.fq:18952: BA ==> BY, BE
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-B.fq:19176: BA ==> BY, BE
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-B.fq:19204: BA ==> BY, BE
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-B.fq:19328: BA ==> BY, BE
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-B.fq:19516: ADDD ==> ADD
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-B.fq:19580: EACG ==> EACH
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-B.fq:19672: BA ==> BY, BE
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-B.fq:19680: BA ==> BY, BE
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-B.fq:19820: CHEC ==> CHECK
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-B.fq:20236: BA ==> BY, BE
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-B.fq:20452: EGE ==> EDGE
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-B.fq:20696: EDE ==> EDGE
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-B.fq:21168: BA ==> BY, BE
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-B.fq:21392: EGE ==> EDGE
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-B.fq:21488: BA ==> BY, BE
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-B.fq:21560: BA ==> BY, BE
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-B.fq:21836: BA ==> BY, BE
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-B.fq:22004: BA ==> BY, BE
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-B.fq:22244: BA ==> BY, BE
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-B.fq:23064: BA ==> BY, BE
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-B.fq:23316: BA ==> BY, BE
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-B.fq:23420: BA ==> BY, BE
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-B.fq:23544: BA ==> BY, BE
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-B.fq:23680: DAA ==> DATA
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-B.fq:23992: BA ==> BY, BE
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-B.fq:24004: BA ==> BY, BE
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-B.fq:24192: BA ==> BY, BE
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-B.fq:24272: AADD ==> ADD
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-B.fq:24416: BA ==> BY, BE
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-B.fq:24984: DED ==> DEAD
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-B.fq:25104: BA ==> BY, BE
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-B.fq:25184: AADD ==> ADD
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-B.fq:25216: BA ==> BY, BE
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-B.fq:25384: BA ==> BY, BE
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-B.fq:25964: BA ==> BY, BE
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-B.fq:26064: BA ==> BY, BE
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-B.fq:26176: BA ==> BY, BE
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-B.fq:26312: CACE ==> CACHE
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-B.fq:26692: BA ==> BY, BE
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-B.fq:27068: BA ==> BY, BE
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-B.fq:27896: BA ==> BY, BE
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-B.fq:28004: BA ==> BY, BE
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-B.fq:28044: BA ==> BY, BE
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-B.fq:28068: BA ==> BY, BE
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-B.fq:28092: ADDD ==> ADD
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-B.fq:28256: BA ==> BY, BE
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-B.fq:28348: BA ==> BY, BE
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-B.fq:28452: BA ==> BY, BE
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-B.fq:28544: AADD ==> ADD
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-B.fq:28656: BA ==> BY, BE
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-B.fq:28664: BA ==> BY, BE
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-B.fq:30124: BA ==> BY, BE
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-B.fq:30380: ADDD ==> ADD
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-B.fq:30676: BA ==> BY, BE
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-B.fq:30812: BA ==> BY, BE
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-B.fq:31024: BA ==> BY, BE
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-B.fq:31064: BA ==> BY, BE
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-B.fq:31340: BA ==> BY, BE
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-B.fq:31404: BA ==> BY, BE
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-B.fq:31428: BA ==> BY, BE
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-B.fq:31512: AADD ==> ADD
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-B.fq:31516: ADDD ==> ADD
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-B.fq:32204: BA ==> BY, BE
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-B.fq:32360: BA ==> BY, BE
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-B.fq:32884: BA ==> BY, BE
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-B.fq:32992: ADDD ==> ADD
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-B.fq:33004: BA ==> BY, BE
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-B.fq:33544: BA ==> BY, BE
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-B.fq:33900: BA ==> BY, BE
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-B.fq:34720: BA ==> BY, BE
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-B.fq:34880: BA ==> BY, BE
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-B.fq:35044: DAA ==> DATA
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-B.fq:35708: BA ==> BY, BE
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-B.fq:36072: BA ==> BY, BE
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-B.fq:36488: BA ==> BY, BE
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-B.fq:36872: ADDD ==> ADD
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-B.fq:36904: BA ==> BY, BE
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-B.fq:36920: BA ==> BY, BE
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-B.fq:37000: BA ==> BY, BE
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-B.fq:37200: BA ==> BY, BE
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-B.fq:37420: DAA ==> DATA
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-B.fq:37432: BA ==> BY, BE
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-B.fq:37536: BA ==> BY, BE
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-B.fq:37764: CACH ==> CATCH, CACHE
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-B.fq:37924: BA ==> BY, BE
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-B.fq:38024: ADDD ==> ADD
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-B.fq:38052: BA ==> BY, BE
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-B.fq:38156: BA ==> BY, BE
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-B.fq:38540: BA ==> BY, BE
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-B.fq:39284: BA ==> BY, BE
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-B.fq:39308: BA ==> BY, BE
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-B.fq:39320: BA ==> BY, BE
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-B.fq:39412: BA ==> BY, BE
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-B.fq:39416: ADDD ==> ADD
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-B.fq:39572: DED ==> DEAD
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-B.fq:39604: BA ==> BY, BE
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-B.fq:39688: BA ==> BY, BE
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-B.fq:40440: BA ==> BY, BE
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-B.fq:40484: BA ==> BY, BE
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-B.fq:40484: BA ==> BY, BE
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-B.fq:40568: AFE ==> SAFE
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-B.fq:40668: EDE ==> EDGE
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-B.fq:41084: BA ==> BY, BE
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-B.fq:41108: BA ==> BY, BE
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-B.fq:41136: BA ==> BY, BE
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-B.fq:41148: BA ==> BY, BE
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-B.fq:41156: BA ==> BY, BE
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-B.fq:41212: DAA ==> DATA
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-B.fq:41348: AFE ==> SAFE
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-B.fq:41420: BA ==> BY, BE
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-B.fq:41604: AADD ==> ADD
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-B.fq:41812: BA ==> BY, BE
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-B.fq:41952: BA ==> BY, BE
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-B.fq:42008: BA ==> BY, BE
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-B.fq:42116: AFE ==> SAFE
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-B.fq:42240: BA ==> BY, BE
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-B.fq:42264: BA ==> BY, BE
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-B.fq:42264: BA ==> BY, BE
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-B.fq:42280: BA ==> BY, BE
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-B.fq:42884: BA ==> BY, BE
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-B.fq:42900: BA ==> BY, BE
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-B.fq:42920: AADD ==> ADD
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-B.fq:42936: BA ==> BY, BE
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-B.fq:43152: BA ==> BY, BE
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-B.fq:43260: BA ==> BY, BE
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-B.fq:43620: BA ==> BY, BE
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-B.fq:43760: DED ==> DEAD
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-B.fq:43852: BA ==> BY, BE
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-B.fq:43940: BA ==> BY, BE
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-B.fq:44332: BA ==> BY, BE
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-B.fq:44428: DED ==> DEAD
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-B.fq:45228: BA ==> BY, BE
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-B.fq:45560: BA ==> BY, BE
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-B.fq:45608: BA ==> BY, BE
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-B.fq:45744: BA ==> BY, BE
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-B.fq:46144: BA ==> BY, BE
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-B.fq:46232: DED ==> DEAD
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-B.fq:46408: BA ==> BY, BE
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-B.fq:46688: BA ==> BY, BE
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-B.fq:46792: BA ==> BY, BE
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-B.fq:47032: BA ==> BY, BE
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-B.fq:47180: BA ==> BY, BE
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-B.fq:47240: BA ==> BY, BE
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-B.fq:47328: ADDD ==> ADD
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-B.fq:48152: BA ==> BY, BE
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-B.fq:48772: CHEC ==> CHECK
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-B.fq:49224: EDE ==> EDGE
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-B.fq:49360: EGE ==> EDGE
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-B.fq:49476: DED ==> DEAD
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-B.fq:49548: BA ==> BY, BE
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-B.fq:49604: CHEC ==> CHECK
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-B.fq:49620: BA ==> BY, BE
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-B.fq:49652: BA ==> BY, BE
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-B.fq:49960: BA ==> BY, BE
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-B.fq:50248: BA ==> BY, BE
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-B.fq:50512: ADDD ==> ADD
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-B.fq:50648: BA ==> BY, BE
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-B.fq:50700: BA ==> BY, BE
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-B.fq:50864: BA ==> BY, BE
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-B.fq:51168: BA ==> BY, BE
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-B.fq:51268: BA ==> BY, BE
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-B.fq:51648: BA ==> BY, BE
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-B.fq:51800: BA ==> BY, BE
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-B.fq:51840: BA ==> BY, BE
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-B.fq:51876: BA ==> BY, BE
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-B.fq:51888: CHEC ==> CHECK
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-B.fq:51912: BA ==> BY, BE
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-B.fq:51976: BA ==> BY, BE
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-B.fq:52216: BA ==> BY, BE
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-B.fq:52248: BA ==> BY, BE
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-B.fq:52272: ADDD ==> ADD
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-B.fq:52532: ADDD ==> ADD
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-B.fq:52668: BA ==> BY, BE
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-B.fq:52764: BA ==> BY, BE
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-B.fq:52996: BA ==> BY, BE
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-B.fq:53092: BA ==> BY, BE
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-B.fq:53320: BA ==> BY, BE
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-B.fq:53644: DAA ==> DATA
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-B.fq:53936: BA ==> BY, BE
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-B.fq:54424: BA ==> BY, BE
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-B.fq:54620: BA ==> BY, BE
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-B.fq:54748: BA ==> BY, BE
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-B.fq:54776: BA ==> BY, BE
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-B.fq:54984: BA ==> BY, BE
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-B.fq:55004: BA ==> BY, BE
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-B.fq:55152: DED ==> DEAD
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-B.fq:55252: ADDD ==> ADD
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-B.fq:55268: BA ==> BY, BE
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-B.fq:55268: BA ==> BY, BE
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-B.fq:55320: ADDD ==> ADD
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-B.fq:55336: BA ==> BY, BE
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-B.fq:55352: BA ==> BY, BE
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-B.fq:55356: BA ==> BY, BE
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-B.fq:55360: AADD ==> ADD
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-B.fq:55500: BA ==> BY, BE
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-B.fq:55560: CACH ==> CATCH, CACHE
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-B.fq:55700: BA ==> BY, BE
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-B.fq:55944: ADDD ==> ADD
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-B.fq:56676: BA ==> BY, BE
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-B.fq:56812: BA ==> BY, BE
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-B.fq:57156: ADDD ==> ADD
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-B.fq:57196: BA ==> BY, BE
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-B.fq:57204: BA ==> BY, BE
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-B.fq:57216: AADD ==> ADD
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-B.fq:57392: BA ==> BY, BE
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-B.fq:57504: ADDD ==> ADD
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-B.fq:57540: EGE ==> EDGE
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-B.fq:58472: BA ==> BY, BE
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-B.fq:58652: BA ==> BY, BE
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-B.fq:58696: BA ==> BY, BE
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-B.fq:58744: BA ==> BY, BE
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-B.fq:58780: BA ==> BY, BE
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-B.fq:59316: BA ==> BY, BE
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-B.fq:59540: BA ==> BY, BE
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-B.fq:59612: BA ==> BY, BE
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-B.fq:59732: BA ==> BY, BE
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-B.fq:60132: BA ==> BY, BE
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-B.fq:60180: ACI ==> ACPI
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-B.fq:60252: BA ==> BY, BE
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-B.fq:60444: BA ==> BY, BE
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-B.fq:60504: BA ==> BY, BE
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-B.fq:60540: BA ==> BY, BE
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-B.fq:60556: BA ==> BY, BE
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-B.fq:60856: BA ==> BY, BE
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-B.fq:60928: BA ==> BY, BE
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-B.fq:61092: BA ==> BY, BE
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-B.fq:61340: EGE ==> EDGE
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-B.fq:61680: BA ==> BY, BE
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-B.fq:61940: ADDD ==> ADD
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-B.fq:62004: AFE ==> SAFE
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-B.fq:62036: CACE ==> CACHE
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-B.fq:62392: BA ==> BY, BE
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-B.fq:62464: ADDD ==> ADD
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-B.fq:62732: BA ==> BY, BE
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-B.fq:62760: BA ==> BY, BE
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-B.fq:63024: BA ==> BY, BE
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-B.fq:63224: BA ==> BY, BE
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-B.fq:63228: BA ==> BY, BE
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-B.fq:63772: BA ==> BY, BE
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-B.fq:63772: ADDD ==> ADD
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-B.fq:63824: BA ==> BY, BE
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-B.fq:64020: BA ==> BY, BE
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-B.fq:64188: ADDD ==> ADD
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-B.fq:64200: BA ==> BY, BE
data/subread-2.0.1+dfsg/test/subjunc/data/junction-reads-B.fq:64208: BA ==> BY, BE
data/subread-2.0.1+dfsg/test/featureCounts/data/test-junc.sam:46: BA ==> BY, BE
data/subread-2.0.1+dfsg/test/featureCounts/data/test-junc.sam:104: BA ==> BY, BE
data/subread-2.0.1+dfsg/test/featureCounts/data/test-junc.sam:192: BA ==> BY, BE
data/subread-2.0.1+dfsg/test/featureCounts/data/test-junc.sam:319: DED ==> DEAD
data/subread-2.0.1+dfsg/test/featureCounts/data/test-junc.sam:328: HGE ==> HE
data/subread-2.0.1+dfsg/test/featureCounts/data/test-junc.sam:395: BA ==> BY, BE
data/subread-2.0.1+dfsg/test/featureCounts/data/test-junc.sam:417: AFE ==> SAFE
data/subread-2.0.1+dfsg/test/featureCounts/data/test-junc.sam:427: BA ==> BY, BE
data/subread-2.0.1+dfsg/test/featureCounts/data/test-junc.sam:470: BA ==> BY, BE
data/subread-2.0.1+dfsg/test/featureCounts/data/test-junc.sam:517: ADDD ==> ADD
data/subread-2.0.1+dfsg/test/featureCounts/data/test-junc.sam:523: BA ==> BY, BE
data/subread-2.0.1+dfsg/test/featureCounts/data/test-junc.sam:597: BA ==> BY, BE
data/subread-2.0.1+dfsg/test/featureCounts/data/test-junc.sam:623: DED ==> DEAD
data/subread-2.0.1+dfsg/test/featureCounts/data/test-junc.sam:647: BA ==> BY, BE
data/subread-2.0.1+dfsg/test/featureCounts/data/test-junc.sam:757: BA ==> BY, BE
data/subread-2.0.1+dfsg/test/featureCounts/data/test-junc.sam:759: BA ==> BY, BE
data/subread-2.0.1+dfsg/test/featureCounts/data/test-junc.sam:969: DED ==> DEAD
data/subread-2.0.1+dfsg/test/featureCounts/data/test-junc.sam:1065: EDE ==> EDGE
data/subread-2.0.1+dfsg/test/featureCounts/data/test-junc.sam:1148: BA ==> BY, BE
data/subread-2.0.1+dfsg/test/featureCounts/data/test-junc.sam:1199: BA ==> BY, BE
data/subread-2.0.1+dfsg/test/featureCounts/data/test-junc.sam:1230: DED ==> DEAD
data/subread-2.0.1+dfsg/test/featureCounts/data/test-junc.sam:1250: BA ==> BY, BE
data/subread-2.0.1+dfsg/test/featureCounts/data/test-junc.sam:1254: BA ==> BY, BE
data/subread-2.0.1+dfsg/test/featureCounts/data/test-junc.sam:1256: BA ==> BY, BE
data/subread-2.0.1+dfsg/test/featureCounts/data/test-junc.sam:1345: BA ==> BY, BE
data/subread-2.0.1+dfsg/test/featureCounts/data/test-junc.sam:1585: BA ==> BY, BE
data/subread-2.0.1+dfsg/test/featureCounts/data/test-junc.sam:1666: BA ==> BY, BE
data/subread-2.0.1+dfsg/test/featureCounts/data/test-junc.sam:1672: ADDD ==> ADD
data/subread-2.0.1+dfsg/test/featureCounts/data/test-junc.sam:1800: BA ==> BY, BE
data/subread-2.0.1+dfsg/test/featureCounts/data/test-junc.sam:1855: BA ==> BY, BE
data/subread-2.0.1+dfsg/test/featureCounts/data/test-junc.sam:1871: HGE ==> HE
data/subread-2.0.1+dfsg/test/featureCounts/data/test-junc.sam:1879: DED ==> DEAD
data/subread-2.0.1+dfsg/test/featureCounts/data/test-junc.sam:1899: BA ==> BY, BE
data/subread-2.0.1+dfsg/test/featureCounts/data/test-junc.sam:1990: BA ==> BY, BE
data/subread-2.0.1+dfsg/test/featureCounts/data/test-junc.sam:2073: ADDD ==> ADD
data/subread-2.0.1+dfsg/test/featureCounts/data/test-junc.sam:2078: BA ==> BY, BE
data/subread-2.0.1+dfsg/test/featureCounts/data/test-junc.sam:2137: BA ==> BY, BE
data/subread-2.0.1+dfsg/test/featureCounts/data/test-junc.sam:2141: BA ==> BY, BE
data/subread-2.0.1+dfsg/test/featureCounts/data/test-junc.sam:2177: BA ==> BY, BE
data/subread-2.0.1+dfsg/test/featureCounts/data/test-junc.sam:2204: BA ==> BY, BE
data/subread-2.0.1+dfsg/test/featureCounts/data/test-junc.sam:2295: DAA ==> DATA
data/subread-2.0.1+dfsg/test/featureCounts/data/test-junc.sam:2324: DAA ==> DATA
data/subread-2.0.1+dfsg/test/featureCounts/data/test-junc.sam:2349: BA ==> BY, BE
data/subread-2.0.1+dfsg/test/featureCounts/data/test-junc.sam:2407: BA ==> BY, BE
data/subread-2.0.1+dfsg/test/featureCounts/data/test-junc.sam:2420: BA ==> BY, BE
data/subread-2.0.1+dfsg/test/featureCounts/data/test-junc.sam:2521: DAA ==> DATA
data/subread-2.0.1+dfsg/test/featureCounts/data/test-junc.sam:2522: BA ==> BY, BE
data/subread-2.0.1+dfsg/test/featureCounts/data/test-junc.sam:2579: BA ==> BY, BE
data/subread-2.0.1+dfsg/test/featureCounts/data/test-junc.sam:2623: BA ==> BY, BE
data/subread-2.0.1+dfsg/test/featureCounts/data/test-junc.sam:2680: BA ==> BY, BE
data/subread-2.0.1+dfsg/test/featureCounts/data/test-junc.sam:2780: BA ==> BY, BE
data/subread-2.0.1+dfsg/test/featureCounts/data/test-junc.sam:2811: BA ==> BY, BE
data/subread-2.0.1+dfsg/test/featureCounts/data/test-junc.sam:2937: BA ==> BY, BE
data/subread-2.0.1+dfsg/test/featureCounts/data/test-junc.sam:3044: BA ==> BY, BE
data/subread-2.0.1+dfsg/test/featureCounts/data/test-junc.sam:3093: BA ==> BY, BE
data/subread-2.0.1+dfsg/test/featureCounts/data/test-junc.sam:3099: BA ==> BY, BE
data/subread-2.0.1+dfsg/test/featureCounts/data/test-junc.sam:3137: BA ==> BY, BE
data/subread-2.0.1+dfsg/test/featureCounts/data/test-junc.sam:3210: BA ==> BY, BE
data/subread-2.0.1+dfsg/test/featureCounts/data/test-junc.sam:3212: BA ==> BY, BE
data/subread-2.0.1+dfsg/test/featureCounts/data/test-junc.sam:3249: BA ==> BY, BE
data/subread-2.0.1+dfsg/test/featureCounts/data/test-junc.sam:3254: BA ==> BY, BE
data/subread-2.0.1+dfsg/test/featureCounts/data/test-junc.sam:3254: BA ==> BY, BE
data/subread-2.0.1+dfsg/test/featureCounts/data/test-junc.sam:3367: DED ==> DEAD
data/subread-2.0.1+dfsg/test/featureCounts/data/test-junc.sam:3563: BA ==> BY, BE
data/subread-2.0.1+dfsg/test/featureCounts/data/test-junc.sam:3573: BA ==> BY, BE
data/subread-2.0.1+dfsg/test/featureCounts/data/test-junc.sam:3626: BA ==> BY, BE
data/subread-2.0.1+dfsg/test/featureCounts/data/test-junc.sam:3675: BA ==> BY, BE
data/subread-2.0.1+dfsg/test/featureCounts/data/test-junc.sam:3681: BA ==> BY, BE
data/subread-2.0.1+dfsg/test/featureCounts/data/test-junc.sam:3747: DED ==> DEAD
data/subread-2.0.1+dfsg/test/featureCounts/data/test-junc.sam:3775: BA ==> BY, BE
data/subread-2.0.1+dfsg/test/featureCounts/data/test-junc.sam:4048: BA ==> BY, BE
data/subread-2.0.1+dfsg/test/featureCounts/data/test-junc.sam:4062: BA ==> BY, BE
data/subread-2.0.1+dfsg/test/featureCounts/data/test-junc.sam:4088: BA ==> BY, BE
data/subread-2.0.1+dfsg/test/featureCounts/data/test-junc.sam:4128: BA ==> BY, BE
data/subread-2.0.1+dfsg/test/featureCounts/data/test-junc.sam:4186: AADD ==> ADD
data/subread-2.0.1+dfsg/test/featureCounts/data/test-junc.sam:4186: BA ==> BY, BE
data/subread-2.0.1+dfsg/test/featureCounts/data/test-junc.sam:4279: BA ==> BY, BE
data/subread-2.0.1+dfsg/test/featureCounts/data/test-junc.sam:4374: BA ==> BY, BE
data/subread-2.0.1+dfsg/test/featureCounts/data/test-junc.sam:4412: BA ==> BY, BE
data/subread-2.0.1+dfsg/test/featureCounts/data/test-junc.sam:4478: BA ==> BY, BE
data/subread-2.0.1+dfsg/test/featureCounts/data/test-junc.sam:4692: BA ==> BY, BE
data/subread-2.0.1+dfsg/test/featureCounts/data/test-junc.sam:4765: BA ==> BY, BE
data/subread-2.0.1+dfsg/test/featureCounts/data/test-junc.sam:4768: BA ==> BY, BE
data/subread-2.0.1+dfsg/test/featureCounts/data/test-junc.sam:4790: BA ==> BY, BE
data/subread-2.0.1+dfsg/test/featureCounts/data/test-junc.sam:4826: DED ==> DEAD
data/subread-2.0.1+dfsg/test/featureCounts/data/test-junc.sam:4924: CACE ==> CACHE
data/subread-2.0.1+dfsg/test/featureCounts/data/test-junc.sam:4979: DAA ==> DATA
data/subread-2.0.1+dfsg/test/featureCounts/data/test-junc.sam:4979: BA ==> BY, BE
data/subread-2.0.1+dfsg/test/featureCounts/data/test-junc.sam:5005: BA ==> BY, BE
data/subread-2.0.1+dfsg/doc/SubreadUsersGuide.tex:208: maping ==> mapping
data/subread-2.0.1+dfsg/doc/SubreadUsersGuide.tex:216: designd ==> designed
data/subread-2.0.1+dfsg/doc/SubreadUsersGuide.tex:306: posssible ==> possible
data/subread-2.0.1+dfsg/doc/SubreadUsersGuide.tex:506: seperated ==> separated
data/subread-2.0.1+dfsg/doc/SubreadUsersGuide.tex:538: seperated ==> separated
data/subread-2.0.1+dfsg/doc/SubreadUsersGuide.tex:690: aligments ==> alignments
data/subread-2.0.1+dfsg/doc/SubreadUsersGuide.tex:693: aligments ==> alignments
data/subread-2.0.1+dfsg/doc/SubreadUsersGuide.tex:746: requried ==> required
data/subread-2.0.1+dfsg/doc/SubreadUsersGuide.tex:751: vew ==> view
data/subread-2.0.1+dfsg/doc/SubreadUsersGuide.tex:866: preforms ==> performs
data/subread-2.0.1+dfsg/doc/SubreadUsersGuide.tex:870: requried ==> required
data/subread-2.0.1+dfsg/doc/SubreadUsersGuide.tex:1320: expresssion ==> expression
data/subread-2.0.1+dfsg/src/sorted-hashtable.c:308: occurance ==> occurrence
data/subread-2.0.1+dfsg/src/sorted-hashtable.c:315: occurance ==> occurrence
data/subread-2.0.1+dfsg/src/sorted-hashtable.c:317: occurance ==> occurrence
data/subread-2.0.1+dfsg/src/sorted-hashtable.c:322: occurance ==> occurrence
data/subread-2.0.1+dfsg/src/sorted-hashtable.c:323: occurance ==> occurrence
data/subread-2.0.1+dfsg/src/sorted-hashtable.c:327: occurance ==> occurrence
data/subread-2.0.1+dfsg/src/sorted-hashtable.c:332: occurance ==> occurrence
data/subread-2.0.1+dfsg/src/propmapped.c:441: ELES ==> ELSE
data/subread-2.0.1+dfsg/src/input-files.h:245: flie ==> file
data/subread-2.0.1+dfsg/src/removeDupReads.c:277: temperary ==> temporary
data/subread-2.0.1+dfsg/src/HelperFunctions.h:133: retrived ==> retrieved
data/subread-2.0.1+dfsg/src/HelperFunctions.h:143: constitues ==> constitutes
data/subread-2.0.1+dfsg/src/input-blc.c:342: fpr ==> for, far, fps
data/subread-2.0.1+dfsg/src/input-blc.c:343: fpr ==> for, far, fps
data/subread-2.0.1+dfsg/src/seek-zlib.c:277: concatinated ==> concatenated
data/subread-2.0.1+dfsg/src/sublog.c:34: ocur ==> occur
data/subread-2.0.1+dfsg/src/sublog.c:50: ocur ==> occur
data/subread-2.0.1+dfsg/src/sublog.c:51: ocur ==> occur
data/subread-2.0.1+dfsg/src/sublog.c:52: ocur ==> occur
data/subread-2.0.1+dfsg/src/sublog.c:59: ocur ==> occur
data/subread-2.0.1+dfsg/src/gen_rand_reads.c:353: aovid ==> avoid
data/subread-2.0.1+dfsg/src/gen_rand_reads.c:434: arbitratry ==> arbitrary
data/subread-2.0.1+dfsg/src/input-files.c:2971: THID ==> THIS
data/subread-2.0.1+dfsg/src/input-files.c:3294: eles ==> else
data/subread-2.0.1+dfsg/src/input-files.c:3322: eles ==> else
data/subread-2.0.1+dfsg/src/input-files.c:3333: eles ==> else
data/subread-2.0.1+dfsg/src/input-files.c:4325: ELES ==> ELSE
data/subread-2.0.1+dfsg/src/input-files.c:6116: tHI ==> the, this
data/subread-2.0.1+dfsg/src/core.h:321: applys ==> applies
data/subread-2.0.1+dfsg/src/core.h:322: applys ==> applies
data/subread-2.0.1+dfsg/src/core.h:475: deside ==> decide
data/subread-2.0.1+dfsg/src/core.h:629: writen ==> written
data/subread-2.0.1+dfsg/src/core.c:76: argumant ==> argument
data/subread-2.0.1+dfsg/src/core.c:82: argumant ==> argument
data/subread-2.0.1+dfsg/src/core.c:95: argumant ==> argument
data/subread-2.0.1+dfsg/src/core.c:101: argumant ==> argument
data/subread-2.0.1+dfsg/src/core.c:113: argumant ==> argument
data/subread-2.0.1+dfsg/src/core.c:2311: deleteion ==> deletion
data/subread-2.0.1+dfsg/src/core.c:2934: Occurance ==> Occurrence
data/subread-2.0.1+dfsg/src/core.c:3702: writting ==> writing
data/subread-2.0.1+dfsg/src/core-junction.h:92: poping ==> popping, pooping
data/subread-2.0.1+dfsg/src/core-indel.c:1087: thn ==> then
data/subread-2.0.1+dfsg/src/core-indel.c:1089: thn ==> then
data/subread-2.0.1+dfsg/src/core-indel.c:1089: thn ==> then
data/subread-2.0.1+dfsg/src/core-indel.c:1089: thn ==> then
data/subread-2.0.1+dfsg/src/core-indel.c:1090: thn ==> then
data/subread-2.0.1+dfsg/src/core-indel.c:1098: thn ==> then
data/subread-2.0.1+dfsg/src/core-indel.c:1183: thn ==> then
data/subread-2.0.1+dfsg/src/core-indel.c:1183: thn ==> then
data/subread-2.0.1+dfsg/src/core-indel.c:1183: thn ==> then
data/subread-2.0.1+dfsg/src/core-indel.c:1184: thn ==> then
data/subread-2.0.1+dfsg/src/core-indel.c:1210: thn ==> then
data/subread-2.0.1+dfsg/src/core-indel.c:1212: thn ==> then
data/subread-2.0.1+dfsg/src/core-indel.c:1212: thn ==> then
data/subread-2.0.1+dfsg/src/core-indel.c:1212: thn ==> then
data/subread-2.0.1+dfsg/src/core-indel.c:1213: thn ==> then
data/subread-2.0.1+dfsg/src/core-indel.c:1656: MAPP ==> MAP
data/subread-2.0.1+dfsg/src/core-indel.c:1672: negativ ==> negative
data/subread-2.0.1+dfsg/src/core-indel.c:2157: COMMEN ==> COMMEND, COMMENT, COMMON
data/subread-2.0.1+dfsg/src/global-reassembly.c:383: currect ==> correct, current
data/subread-2.0.1+dfsg/src/global-reassembly.c:567: concatination ==> concatenation
data/subread-2.0.1+dfsg/src/global-reassembly.c:1366: Examing ==> Examining
data/subread-2.0.1+dfsg/src/SNPCalling.c:243: inclued ==> included
data/subread-2.0.1+dfsg/src/SNPCalling.c:423: inclued ==> included
data/subread-2.0.1+dfsg/src/SNPCalling.c:1488: immediatly ==> immediately
data/subread-2.0.1+dfsg/src/SNPCalling.c:1713: unparseable ==> unparsable
data/subread-2.0.1+dfsg/src/hashtable.h:79: minumum ==> minimum
data/subread-2.0.1+dfsg/src/core-junction.c:329: explainations ==> explanations
data/subread-2.0.1+dfsg/src/core-junction.c:478: explainations ==> explanations
data/subread-2.0.1+dfsg/src/core-junction.c:1326: differnet ==> different
data/subread-2.0.1+dfsg/src/core-junction.c:2861: bondary ==> boundary
data/subread-2.0.1+dfsg/src/core-junction.c:5285: everytime ==> every time
data/subread-2.0.1+dfsg/src/sorted-hashtable.h:48: occured ==> occurred
data/subread-2.0.1+dfsg/src/sorted-hashtable.h:56: existance ==> existence
data/subread-2.0.1+dfsg/src/sambam-file.h:209: commitable ==> committable
data/subread-2.0.1+dfsg/src/sambam-file.c:22: Specication ==> Specification
data/subread-2.0.1+dfsg/src/readSummary.c:1051: REALL ==> REAL, REALLY
data/subread-2.0.1+dfsg/src/readSummary.c:1986: tHI ==> the, this
data/subread-2.0.1+dfsg/src/readSummary.c:2067: sction ==> section, suction
data/subread-2.0.1+dfsg/src/readSummary.c:6502: allowd ==> allowed, allow, allows
data/subread-2.0.1+dfsg/src/readSummary.c:6515: caculated ==> calculated
data/subread-2.0.1+dfsg/src/readSummary.c:7760: dosn't ==> doesn't
data/subread-2.0.1+dfsg/src/HelperFunctions.c:1813: retreived ==> retrieved
data/subread-2.0.1+dfsg/src/HelperFunctions.c:2694: Hel ==> Help, hell, heal
data/subread-2.0.1+dfsg/src/longread-one/longread-mapping.c:270: bewteen ==> between
data/subread-2.0.1+dfsg/src/longread-one/longread-mapping.c:341: thid ==> this
data/subread-2.0.1+dfsg/src/longread-one/longread-mapping.c:345: thid ==> this
data/subread-2.0.1+dfsg/src/longread-one/LRMchro-event.c:84: te ==> the, be, we
data/subread-2.0.1+dfsg/src/longread-one/LRMchro-event.c:118: te ==> the, be, we
data/subread-2.0.1+dfsg/src/longread-one/LRMchro-event.c:178: te ==> the, be, we
data/subread-2.0.1+dfsg/src/longread-one/LRMchro-event.c:179: te ==> the, be, we
data/subread-2.0.1+dfsg/src/longread-one/LRMchro-event.c:185: te ==> the, be, we
data/subread-2.0.1+dfsg/src/longread-one/LRMchro-event.c:185: te ==> the, be, we
data/subread-2.0.1+dfsg/src/longread-one/LRMchro-event.c:221: thise ==> these, this
data/subread-2.0.1+dfsg/src/longread-one/LRMchro-event.c:222: thise ==> these, this
data/subread-2.0.1+dfsg/src/longread-one/LRMchro-event.c:223: thise ==> these, this
data/subread-2.0.1+dfsg/src/longread-one/LRMseek-zlib.c:200: TRE ==> TREE
data/subread-2.0.1+dfsg/debian/README.Debian:17: submited ==> submitted
data/subread-2.0.1+dfsg/debian/changelog:109: paches ==> patches
data/subread-2.0.1+dfsg/debian/changelog:242: contorl ==> control
data/subread-2.0.1+dfsg/debian/filter.pl:25: substitude ==> substitute
data/subread-2.0.1+dfsg/debian/patches/typo.patch:9: Unknwon ==> Unknown
data/subread-2.0.1+dfsg/debian/patches/typo.patch:20: porgram ==> program
data/subread-2.0.1+dfsg/debian/patches/typo.patch:29: ommited ==> omitted
data/subread-2.0.1+dfsg/debian/patches/typo.patch:38: Invalide ==> Invalid
data/subread-2.0.1+dfsg/.pc/typo.patch/src/sambam-file.c:22: Specication ==> Specification
data/subread-2.0.1+dfsg/.pc/typo.patch/src/sambam-file.c:208: Unknwon ==> Unknown
data/subread-2.0.1+dfsg/.pc/typo.patch/src/readSummary.c:1051: REALL ==> REAL, REALLY
data/subread-2.0.1+dfsg/.pc/typo.patch/src/readSummary.c:1313: porgram ==> program
data/subread-2.0.1+dfsg/.pc/typo.patch/src/readSummary.c:1986: tHI ==> the, this
data/subread-2.0.1+dfsg/.pc/typo.patch/src/readSummary.c:2067: sction ==> section, suction
data/subread-2.0.1+dfsg/.pc/typo.patch/src/readSummary.c:4064: ommited ==> omitted
data/subread-2.0.1+dfsg/.pc/typo.patch/src/readSummary.c:6502: allowd ==> allowed, allow, allows
data/subread-2.0.1+dfsg/.pc/typo.patch/src/readSummary.c:6515: caculated ==> calculated
data/subread-2.0.1+dfsg/.pc/typo.patch/src/readSummary.c:7587: Invalide ==> Invalid
data/subread-2.0.1+dfsg/.pc/typo.patch/src/readSummary.c:7760: dosn't ==> doesn't
data/subread-2.0.1+dfsg/.pc/fix_ftbfs_kfreebsd.patch/src/HelperFunctions.c:1809: retreived ==> retrieved
data/subread-2.0.1+dfsg/.pc/fix_ftbfs_kfreebsd.patch/src/HelperFunctions.c:2690: Hel ==> Help, hell, heal