data/t-coffee-13.41.0.28bdc39+dfsg/README:1: higer ==> higher
data/t-coffee-13.41.0.28bdc39+dfsg/README:14: expresso ==> espresso
data/t-coffee-13.41.0.28bdc39+dfsg/README:19: expresso ==> espresso
data/t-coffee-13.41.0.28bdc39+dfsg/install:75: expresso ==> espresso
data/t-coffee-13.41.0.28bdc39+dfsg/install:141: defualt ==> default
data/t-coffee-13.41.0.28bdc39+dfsg/install:164: enviroment ==> environment
data/t-coffee-13.41.0.28bdc39+dfsg/install:165: enviroment ==> environment
data/t-coffee-13.41.0.28bdc39+dfsg/install:207: environement ==> environment
data/t-coffee-13.41.0.28bdc39+dfsg/install:378: succesful ==> successful
data/t-coffee-13.41.0.28bdc39+dfsg/install:383: succesful ==> successful
data/t-coffee-13.41.0.28bdc39+dfsg/install:387: succesful ==> successful
data/t-coffee-13.41.0.28bdc39+dfsg/install:616: unsuccesful ==> unsuccessful
data/t-coffee-13.41.0.28bdc39+dfsg/install:620: succesful ==> successful
data/t-coffee-13.41.0.28bdc39+dfsg/install:626: sytem ==> system
data/t-coffee-13.41.0.28bdc39+dfsg/install:962: mantained ==> maintained
data/t-coffee-13.41.0.28bdc39+dfsg/install:1143: unx ==> unix
data/t-coffee-13.41.0.28bdc39+dfsg/install:1504: environement ==> environment
data/t-coffee-13.41.0.28bdc39+dfsg/install:1646: expresso ==> espresso
data/t-coffee-13.41.0.28bdc39+dfsg/install:1662: expresso ==> espresso
data/t-coffee-13.41.0.28bdc39+dfsg/install:1820: expresso ==> espresso
data/t-coffee-13.41.0.28bdc39+dfsg/install:1830: expresso ==> espresso
data/t-coffee-13.41.0.28bdc39+dfsg/install:1838: expresso ==> espresso
data/t-coffee-13.41.0.28bdc39+dfsg/install:1847: expresso ==> espresso
data/t-coffee-13.41.0.28bdc39+dfsg/install:1855: expresso ==> espresso
data/t-coffee-13.41.0.28bdc39+dfsg/install:1863: expresso ==> espresso
data/t-coffee-13.41.0.28bdc39+dfsg/install:1872: expresso ==> espresso
data/t-coffee-13.41.0.28bdc39+dfsg/install:1933: expresso ==> espresso
data/t-coffee-13.41.0.28bdc39+dfsg/install:1942: expresso ==> espresso
data/t-coffee-13.41.0.28bdc39+dfsg/install:1950: expresso ==> espresso
data/t-coffee-13.41.0.28bdc39+dfsg/install:1958: expresso ==> espresso
data/t-coffee-13.41.0.28bdc39+dfsg/install:1973: expresso ==> espresso
data/t-coffee-13.41.0.28bdc39+dfsg/install:2002: expresso ==> espresso
data/t-coffee-13.41.0.28bdc39+dfsg/install:2002: expresso ==> espresso
data/t-coffee-13.41.0.28bdc39+dfsg/install:2053: expresso ==> espresso
data/t-coffee-13.41.0.28bdc39+dfsg/tclinkdb.txt:9: expresso ==> espresso
data/t-coffee-13.41.0.28bdc39+dfsg/tclinkdb.txt:27: expresso ==> espresso
data/t-coffee-13.41.0.28bdc39+dfsg/tclinkdb.txt:209: expresso ==> espresso
data/t-coffee-13.41.0.28bdc39+dfsg/tclinkdb.txt:220: expresso ==> espresso
data/t-coffee-13.41.0.28bdc39+dfsg/tclinkdb.txt:230: expresso ==> espresso
data/t-coffee-13.41.0.28bdc39+dfsg/tclinkdb.txt:240: expresso ==> espresso
data/t-coffee-13.41.0.28bdc39+dfsg/tclinkdb.txt:249: expresso ==> espresso
data/t-coffee-13.41.0.28bdc39+dfsg/tclinkdb.txt:259: expresso ==> espresso
data/t-coffee-13.41.0.28bdc39+dfsg/tclinkdb.txt:269: expresso ==> espresso
data/t-coffee-13.41.0.28bdc39+dfsg/tclinkdb.txt:337: expresso ==> espresso
data/t-coffee-13.41.0.28bdc39+dfsg/tclinkdb.txt:347: expresso ==> espresso
data/t-coffee-13.41.0.28bdc39+dfsg/tclinkdb.txt:356: expresso ==> espresso
data/t-coffee-13.41.0.28bdc39+dfsg/tclinkdb.txt:365: expresso ==> espresso
data/t-coffee-13.41.0.28bdc39+dfsg/tclinkdb.txt:382: expresso ==> espresso
data/t-coffee-13.41.0.28bdc39+dfsg/tclinkdb.txt:417: expresso ==> espresso
data/t-coffee-13.41.0.28bdc39+dfsg/tclinkdb.txt:417: expresso ==> espresso
data/t-coffee-13.41.0.28bdc39+dfsg/mcoffee/New_KS.267.seq:927: DAA ==> DATA
data/t-coffee-13.41.0.28bdc39+dfsg/example/4YM9A.pdb:10: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/4YM9A.pdb:11: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/4YM9A.pdb:11: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/4YM9A.pdb:11: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/4YM9A.pdb:17: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/4YM9A.pdb:17: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/4YM9A.pdb:19: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/4YM9A.pdb:21: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/4YM9A.pdb:21: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/4YM9A.pdb:22: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/4YM9A.pdb:22: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/4YM9A.pdb:23: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/4YM9A.pdb:23: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/4YM9A.pdb:25: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/4YM9A.pdb:25: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/4YM9A.pdb:26: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/4YM9A.pdb:26: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/4YM9A.pdb:27: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/4YM9A.pdb:99: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/4YM9A.pdb:100: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/4YM9A.pdb:101: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/4YM9A.pdb:102: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/4YM9A.pdb:103: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/4YM9A.pdb:104: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/4YM9A.pdb:126: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/4YM9A.pdb:127: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/4YM9A.pdb:128: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/4YM9A.pdb:129: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/4YM9A.pdb:130: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/4YM9A.pdb:131: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/4YM9A.pdb:149: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/4YM9A.pdb:150: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/4YM9A.pdb:151: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/4YM9A.pdb:152: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/4YM9A.pdb:153: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/4YM9A.pdb:154: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/4YM9A.pdb:195: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/4YM9A.pdb:196: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/4YM9A.pdb:197: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/4YM9A.pdb:198: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/4YM9A.pdb:199: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/4YM9A.pdb:200: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/4YM9A.pdb:784: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/4YM9A.pdb:785: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/4YM9A.pdb:786: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/4YM9A.pdb:787: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/4YM9A.pdb:788: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/4YM9A.pdb:789: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/4YM9A.pdb:820: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/4YM9A.pdb:821: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/4YM9A.pdb:822: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/4YM9A.pdb:823: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/4YM9A.pdb:824: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/4YM9A.pdb:825: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/4YM9A.pdb:952: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/4YM9A.pdb:953: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/4YM9A.pdb:954: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/4YM9A.pdb:955: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/4YM9A.pdb:956: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/4YM9A.pdb:957: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/4YM9A.pdb:1214: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/4YM9A.pdb:1215: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/4YM9A.pdb:1216: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/4YM9A.pdb:1217: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/4YM9A.pdb:1218: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/4YM9A.pdb:1219: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/4YM9A.pdb:1220: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/4YM9A.pdb:1221: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/4YM9A.pdb:1222: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/4YM9A.pdb:1223: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/4YM9A.pdb:1224: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/4YM9A.pdb:1225: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/4YM9A.pdb:1256: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/4YM9A.pdb:1257: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/4YM9A.pdb:1258: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/4YM9A.pdb:1259: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/4YM9A.pdb:1260: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/4YM9A.pdb:1261: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/4YM9A.pdb:1293: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/4YM9A.pdb:1294: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/4YM9A.pdb:1295: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/4YM9A.pdb:1296: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/4YM9A.pdb:1297: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/4YM9A.pdb:1298: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/4YM9A.pdb:1363: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/4YM9A.pdb:1364: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/4YM9A.pdb:1365: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/4YM9A.pdb:1366: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/4YM9A.pdb:1367: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/4YM9A.pdb:1368: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/4YM9A.pdb:1400: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/4YM9A.pdb:1401: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/4YM9A.pdb:1402: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/4YM9A.pdb:1403: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/4YM9A.pdb:1404: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/4YM9A.pdb:1405: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/4YM9A.pdb:1533: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/4YM9A.pdb:1534: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/4YM9A.pdb:1535: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/4YM9A.pdb:1536: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/4YM9A.pdb:1537: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/4YM9A.pdb:1538: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/4YM9A.pdb:1557: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/4YM9A.pdb:1558: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/4YM9A.pdb:1559: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/4YM9A.pdb:1560: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/4YM9A.pdb:1561: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/4YM9A.pdb:1562: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/4YM9A.pdb:1673: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/4YM9A.pdb:1674: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/4YM9A.pdb:1675: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/4YM9A.pdb:1676: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/4YM9A.pdb:1677: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/4YM9A.pdb:1678: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/4YM9A.pdb:1704: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/4YM9A.pdb:1705: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/4YM9A.pdb:1706: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/4YM9A.pdb:1707: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/4YM9A.pdb:1708: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/4YM9A.pdb:1709: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/4YM9A.pdb:1768: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/4YM9A.pdb:1769: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/4YM9A.pdb:1770: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/4YM9A.pdb:1771: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/4YM9A.pdb:1772: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/4YM9A.pdb:1773: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3IJ24.pdb:10: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3IJ24.pdb:68: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3IJ24.pdb:69: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3IJ24.pdb:70: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3IJ24.pdb:71: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3IJ24.pdb:72: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3IJ24.pdb:73: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1PPG.pdb:11: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1PPG.pdb:12: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1PPG.pdb:14: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1PPG.pdb:17: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1PPG.pdb:20: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1PPG.pdb:21: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1PPG.pdb:21: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1PPG.pdb:22: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1PPG.pdb:23: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1PPG.pdb:24: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1PPG.pdb:24: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1PPG.pdb:26: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1PPG.pdb:157: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1PPG.pdb:158: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1PPG.pdb:159: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1PPG.pdb:160: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1PPG.pdb:161: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1PPG.pdb:162: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1PPG.pdb:312: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1PPG.pdb:313: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1PPG.pdb:314: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1PPG.pdb:315: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1PPG.pdb:316: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1PPG.pdb:317: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1PPG.pdb:454: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1PPG.pdb:455: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1PPG.pdb:456: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1PPG.pdb:457: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1PPG.pdb:458: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1PPG.pdb:459: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1PPG.pdb:749: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1PPG.pdb:750: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1PPG.pdb:751: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1PPG.pdb:752: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1PPG.pdb:753: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1PPG.pdb:754: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1PPG.pdb:1044: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1PPG.pdb:1045: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1PPG.pdb:1046: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1PPG.pdb:1047: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1PPG.pdb:1048: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1PPG.pdb:1049: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1PPG.pdb:1134: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1PPG.pdb:1135: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1PPG.pdb:1136: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1PPG.pdb:1137: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1PPG.pdb:1138: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1PPG.pdb:1139: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1PPG.pdb:1176: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1PPG.pdb:1177: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1PPG.pdb:1178: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1PPG.pdb:1179: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1PPG.pdb:1180: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1PPG.pdb:1181: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1PPG.pdb:1290: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1PPG.pdb:1291: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1PPG.pdb:1292: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1PPG.pdb:1293: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1PPG.pdb:1294: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1PPG.pdb:1295: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1PPG.pdb:1300: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1PPG.pdb:1301: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1PPG.pdb:1302: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1PPG.pdb:1303: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1PPG.pdb:1304: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1PPG.pdb:1305: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1PPG.pdb:1389: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1PPG.pdb:1390: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1PPG.pdb:1391: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1PPG.pdb:1392: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1PPG.pdb:1393: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1PPG.pdb:1394: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1PPG.pdb:1438: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1PPG.pdb:1439: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1PPG.pdb:1440: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1PPG.pdb:1441: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1PPG.pdb:1442: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1PPG.pdb:1443: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1PPG.pdb:1588: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1PPG.pdb:1589: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1PPG.pdb:1590: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1PPG.pdb:1591: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1PPG.pdb:1592: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1PPG.pdb:1593: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/b30.aln.html:19: TE ==> THE, BE, WE
data/t-coffee-13.41.0.28bdc39+dfsg/example/b30.aln.html:19: TE ==> THE, BE, WE
data/t-coffee-13.41.0.28bdc39+dfsg/example/sample_seq1.tm_html:19: HEL ==> HELP, HELL, HEAL
data/t-coffee-13.41.0.28bdc39+dfsg/example/process_list.pl:270: Submited ==> Submitted
data/t-coffee-13.41.0.28bdc39+dfsg/example/2ZPRB.pdb:10: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2ZPRB.pdb:11: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2ZPRB.pdb:11: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2ZPRB.pdb:12: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2ZPRB.pdb:12: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2ZPRB.pdb:13: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2ZPRB.pdb:14: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2ZPRB.pdb:15: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2ZPRB.pdb:15: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2ZPRB.pdb:15: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2ZPRB.pdb:15: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2ZPRB.pdb:15: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2ZPRB.pdb:16: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2ZPRB.pdb:18: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2ZPRB.pdb:18: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2ZPRB.pdb:19: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2ZPRB.pdb:19: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2ZPRB.pdb:19: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2ZPRB.pdb:20: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2ZPRB.pdb:21: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2ZPRB.pdb:21: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2ZPRB.pdb:23: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2ZPRB.pdb:23: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2ZPRB.pdb:24: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2ZPRB.pdb:26: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2ZPRB.pdb:103: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2ZPRB.pdb:104: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2ZPRB.pdb:105: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2ZPRB.pdb:106: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2ZPRB.pdb:107: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2ZPRB.pdb:108: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2ZPRB.pdb:151: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2ZPRB.pdb:152: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2ZPRB.pdb:153: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2ZPRB.pdb:154: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2ZPRB.pdb:155: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2ZPRB.pdb:156: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2ZPRB.pdb:173: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2ZPRB.pdb:174: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2ZPRB.pdb:175: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2ZPRB.pdb:176: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2ZPRB.pdb:177: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2ZPRB.pdb:178: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2ZPRB.pdb:230: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2ZPRB.pdb:231: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2ZPRB.pdb:232: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2ZPRB.pdb:233: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2ZPRB.pdb:234: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2ZPRB.pdb:235: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2ZPRB.pdb:304: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2ZPRB.pdb:305: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2ZPRB.pdb:306: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2ZPRB.pdb:307: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2ZPRB.pdb:308: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2ZPRB.pdb:309: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2ZPRB.pdb:357: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2ZPRB.pdb:358: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2ZPRB.pdb:359: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2ZPRB.pdb:360: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2ZPRB.pdb:361: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2ZPRB.pdb:362: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2ZPRB.pdb:487: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2ZPRB.pdb:488: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2ZPRB.pdb:489: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2ZPRB.pdb:490: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2ZPRB.pdb:491: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2ZPRB.pdb:492: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2ZPRB.pdb:530: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2ZPRB.pdb:531: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2ZPRB.pdb:532: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2ZPRB.pdb:533: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2ZPRB.pdb:534: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2ZPRB.pdb:535: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2ZPRB.pdb:536: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2ZPRB.pdb:537: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2ZPRB.pdb:538: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2ZPRB.pdb:539: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2ZPRB.pdb:540: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2ZPRB.pdb:541: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2ZPRB.pdb:542: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2ZPRB.pdb:543: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2ZPRB.pdb:544: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2ZPRB.pdb:545: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2ZPRB.pdb:546: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2ZPRB.pdb:547: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2ZPRB.pdb:622: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2ZPRB.pdb:623: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2ZPRB.pdb:624: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2ZPRB.pdb:625: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2ZPRB.pdb:626: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2ZPRB.pdb:627: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2ZPRB.pdb:628: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2ZPRB.pdb:629: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2ZPRB.pdb:630: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2ZPRB.pdb:631: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2ZPRB.pdb:632: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2ZPRB.pdb:633: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2ZPRB.pdb:735: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2ZPRB.pdb:736: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2ZPRB.pdb:737: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2ZPRB.pdb:738: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2ZPRB.pdb:739: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2ZPRB.pdb:740: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2ZPRB.pdb:854: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2ZPRB.pdb:855: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2ZPRB.pdb:856: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2ZPRB.pdb:857: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2ZPRB.pdb:858: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2ZPRB.pdb:859: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2ZPRB.pdb:860: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2ZPRB.pdb:861: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2ZPRB.pdb:862: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2ZPRB.pdb:863: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2ZPRB.pdb:864: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2ZPRB.pdb:865: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2ZPRB.pdb:928: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2ZPRB.pdb:929: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2ZPRB.pdb:930: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2ZPRB.pdb:931: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2ZPRB.pdb:932: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2ZPRB.pdb:933: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2ZPRB.pdb:979: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2ZPRB.pdb:980: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2ZPRB.pdb:981: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2ZPRB.pdb:982: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2ZPRB.pdb:983: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2ZPRB.pdb:984: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2ZPRB.pdb:985: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2ZPRB.pdb:986: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2ZPRB.pdb:987: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2ZPRB.pdb:988: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2ZPRB.pdb:989: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2ZPRB.pdb:990: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2ZPRB.pdb:1102: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2ZPRB.pdb:1103: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2ZPRB.pdb:1104: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2ZPRB.pdb:1105: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2ZPRB.pdb:1106: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2ZPRB.pdb:1107: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2ZPRB.pdb:1120: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2ZPRB.pdb:1121: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2ZPRB.pdb:1122: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2ZPRB.pdb:1123: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2ZPRB.pdb:1124: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2ZPRB.pdb:1125: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2ZPRB.pdb:1156: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2ZPRB.pdb:1157: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2ZPRB.pdb:1158: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2ZPRB.pdb:1159: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2ZPRB.pdb:1160: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2ZPRB.pdb:1161: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2ZPRB.pdb:1309: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2ZPRB.pdb:1310: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2ZPRB.pdb:1311: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2ZPRB.pdb:1312: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2ZPRB.pdb:1313: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2ZPRB.pdb:1314: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2ZPRB.pdb:1342: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2ZPRB.pdb:1343: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2ZPRB.pdb:1344: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2ZPRB.pdb:1345: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2ZPRB.pdb:1346: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2ZPRB.pdb:1347: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2ZPRB.pdb:1439: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2ZPRB.pdb:1440: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2ZPRB.pdb:1441: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2ZPRB.pdb:1442: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2ZPRB.pdb:1443: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2ZPRB.pdb:1444: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2ZPRB.pdb:1639: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2ZPRB.pdb:1640: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2ZPRB.pdb:1641: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2ZPRB.pdb:1642: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2ZPRB.pdb:1643: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2ZPRB.pdb:1644: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1FY3A.pdb:11: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1FY3A.pdb:13: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1FY3A.pdb:13: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1FY3A.pdb:14: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1FY3A.pdb:15: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1FY3A.pdb:15: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1FY3A.pdb:15: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1FY3A.pdb:15: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1FY3A.pdb:17: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1FY3A.pdb:17: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1FY3A.pdb:19: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1FY3A.pdb:19: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1FY3A.pdb:20: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1FY3A.pdb:24: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1FY3A.pdb:24: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1FY3A.pdb:155: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1FY3A.pdb:156: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1FY3A.pdb:157: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1FY3A.pdb:158: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1FY3A.pdb:159: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1FY3A.pdb:160: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1FY3A.pdb:335: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1FY3A.pdb:336: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1FY3A.pdb:337: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1FY3A.pdb:338: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1FY3A.pdb:339: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1FY3A.pdb:340: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1FY3A.pdb:365: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1FY3A.pdb:366: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1FY3A.pdb:367: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1FY3A.pdb:368: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1FY3A.pdb:369: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1FY3A.pdb:370: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1FY3A.pdb:499: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1FY3A.pdb:500: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1FY3A.pdb:501: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1FY3A.pdb:502: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1FY3A.pdb:503: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1FY3A.pdb:504: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1FY3A.pdb:543: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1FY3A.pdb:544: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1FY3A.pdb:545: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1FY3A.pdb:546: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1FY3A.pdb:547: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1FY3A.pdb:548: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1FY3A.pdb:557: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1FY3A.pdb:558: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1FY3A.pdb:559: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1FY3A.pdb:560: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1FY3A.pdb:561: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1FY3A.pdb:562: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1FY3A.pdb:563: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1FY3A.pdb:564: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1FY3A.pdb:565: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1FY3A.pdb:566: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1FY3A.pdb:567: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1FY3A.pdb:568: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1FY3A.pdb:577: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1FY3A.pdb:578: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1FY3A.pdb:579: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1FY3A.pdb:580: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1FY3A.pdb:581: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1FY3A.pdb:582: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1FY3A.pdb:786: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1FY3A.pdb:787: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1FY3A.pdb:788: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1FY3A.pdb:789: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1FY3A.pdb:790: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1FY3A.pdb:791: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1FY3A.pdb:792: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1FY3A.pdb:793: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1FY3A.pdb:794: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1FY3A.pdb:795: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1FY3A.pdb:796: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1FY3A.pdb:797: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1FY3A.pdb:979: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1FY3A.pdb:980: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1FY3A.pdb:981: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1FY3A.pdb:982: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1FY3A.pdb:983: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1FY3A.pdb:984: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1FY3A.pdb:1005: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1FY3A.pdb:1006: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1FY3A.pdb:1007: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1FY3A.pdb:1008: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1FY3A.pdb:1009: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1FY3A.pdb:1010: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1FY3A.pdb:1038: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1FY3A.pdb:1039: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1FY3A.pdb:1040: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1FY3A.pdb:1041: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1FY3A.pdb:1042: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1FY3A.pdb:1043: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1FY3A.pdb:1421: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1FY3A.pdb:1422: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1FY3A.pdb:1423: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1FY3A.pdb:1424: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1FY3A.pdb:1425: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1FY3A.pdb:1426: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1FY3A.pdb:1438: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1FY3A.pdb:1439: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1FY3A.pdb:1440: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1FY3A.pdb:1441: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1FY3A.pdb:1442: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1FY3A.pdb:1443: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/sample_prot_thread.html:19: TE ==> THE, BE, WE
data/t-coffee-13.41.0.28bdc39+dfsg/example/sample_prot_thread.html:19: EDN ==> END
data/t-coffee-13.41.0.28bdc39+dfsg/example/4KGAB.pdb:10: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/4KGAB.pdb:10: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/4KGAB.pdb:12: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/4KGAB.pdb:12: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/4KGAB.pdb:13: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/4KGAB.pdb:14: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/4KGAB.pdb:14: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/4KGAB.pdb:15: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/4KGAB.pdb:15: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/4KGAB.pdb:17: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/4KGAB.pdb:17: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/4KGAB.pdb:17: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/4KGAB.pdb:17: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/4KGAB.pdb:17: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/4KGAB.pdb:18: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/4KGAB.pdb:18: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/4KGAB.pdb:19: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/4KGAB.pdb:20: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/4KGAB.pdb:20: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/4KGAB.pdb:21: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/4KGAB.pdb:22: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/4KGAB.pdb:22: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/4KGAB.pdb:23: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/4KGAB.pdb:24: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/4KGAB.pdb:78: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/4KGAB.pdb:79: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/4KGAB.pdb:80: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/4KGAB.pdb:81: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/4KGAB.pdb:82: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/4KGAB.pdb:83: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/4KGAB.pdb:101: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/4KGAB.pdb:102: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/4KGAB.pdb:103: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/4KGAB.pdb:104: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/4KGAB.pdb:105: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/4KGAB.pdb:106: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/4KGAB.pdb:219: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/4KGAB.pdb:220: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/4KGAB.pdb:221: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/4KGAB.pdb:222: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/4KGAB.pdb:223: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/4KGAB.pdb:224: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/4KGAB.pdb:302: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/4KGAB.pdb:303: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/4KGAB.pdb:304: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/4KGAB.pdb:305: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/4KGAB.pdb:306: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/4KGAB.pdb:307: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/4KGAB.pdb:362: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/4KGAB.pdb:363: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/4KGAB.pdb:364: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/4KGAB.pdb:365: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/4KGAB.pdb:366: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/4KGAB.pdb:367: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/4KGAB.pdb:429: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/4KGAB.pdb:430: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/4KGAB.pdb:431: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/4KGAB.pdb:432: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/4KGAB.pdb:433: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/4KGAB.pdb:434: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/4KGAB.pdb:474: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/4KGAB.pdb:475: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/4KGAB.pdb:476: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/4KGAB.pdb:477: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/4KGAB.pdb:478: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/4KGAB.pdb:479: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/4KGAB.pdb:514: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/4KGAB.pdb:515: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/4KGAB.pdb:516: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/4KGAB.pdb:517: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/4KGAB.pdb:518: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/4KGAB.pdb:519: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/4KGAB.pdb:528: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/4KGAB.pdb:529: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/4KGAB.pdb:530: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/4KGAB.pdb:531: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/4KGAB.pdb:532: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/4KGAB.pdb:533: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/4KGAB.pdb:713: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/4KGAB.pdb:714: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/4KGAB.pdb:715: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/4KGAB.pdb:716: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/4KGAB.pdb:717: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/4KGAB.pdb:718: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/4KGAB.pdb:726: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/4KGAB.pdb:727: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/4KGAB.pdb:728: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/4KGAB.pdb:729: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/4KGAB.pdb:730: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/4KGAB.pdb:740: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/4KGAB.pdb:741: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/4KGAB.pdb:742: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/4KGAB.pdb:743: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/4KGAB.pdb:744: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/4KGAB.pdb:745: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/4KGAB.pdb:776: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/4KGAB.pdb:777: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/4KGAB.pdb:778: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/4KGAB.pdb:779: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/4KGAB.pdb:780: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/4KGAB.pdb:781: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/4KGAB.pdb:790: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/4KGAB.pdb:791: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/4KGAB.pdb:792: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/4KGAB.pdb:793: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/4KGAB.pdb:794: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/4KGAB.pdb:795: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/4KGAB.pdb:809: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/4KGAB.pdb:810: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/4KGAB.pdb:811: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/4KGAB.pdb:812: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/4KGAB.pdb:813: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/4KGAB.pdb:814: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/4KGAB.pdb:859: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/4KGAB.pdb:860: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/4KGAB.pdb:861: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/4KGAB.pdb:862: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/4KGAB.pdb:863: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/4KGAB.pdb:864: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/4KGAB.pdb:886: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/4KGAB.pdb:887: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/4KGAB.pdb:888: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/4KGAB.pdb:889: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/4KGAB.pdb:890: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/4KGAB.pdb:891: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/4KGAB.pdb:1023: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/4KGAB.pdb:1024: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/4KGAB.pdb:1025: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/4KGAB.pdb:1026: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/4KGAB.pdb:1027: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/4KGAB.pdb:1028: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/4KGAB.pdb:1043: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/4KGAB.pdb:1044: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/4KGAB.pdb:1045: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/4KGAB.pdb:1046: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/4KGAB.pdb:1047: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/4KGAB.pdb:1048: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/4KGAB.pdb:1076: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/4KGAB.pdb:1077: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/4KGAB.pdb:1078: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/4KGAB.pdb:1079: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/4KGAB.pdb:1080: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/4KGAB.pdb:1081: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/4KGAB.pdb:1163: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/4KGAB.pdb:1164: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/4KGAB.pdb:1165: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/4KGAB.pdb:1166: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/4KGAB.pdb:1167: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/4KGAB.pdb:1168: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/4KGAB.pdb:1237: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/4KGAB.pdb:1238: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/4KGAB.pdb:1239: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/4KGAB.pdb:1240: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/4KGAB.pdb:1241: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/4KGAB.pdb:1242: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/4KGAB.pdb:1266: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/4KGAB.pdb:1267: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/4KGAB.pdb:1268: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/4KGAB.pdb:1269: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/4KGAB.pdb:1270: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/4KGAB.pdb:1271: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/4KGAB.pdb:1369: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/4KGAB.pdb:1370: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/4KGAB.pdb:1371: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/4KGAB.pdb:1372: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/4KGAB.pdb:1373: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/4KGAB.pdb:1374: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/4Q2KD.pdb:11: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/4Q2KD.pdb:12: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/4Q2KD.pdb:13: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/4Q2KD.pdb:14: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/4Q2KD.pdb:15: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/4Q2KD.pdb:15: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/4Q2KD.pdb:15: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/4Q2KD.pdb:16: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/4Q2KD.pdb:17: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/4Q2KD.pdb:17: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/4Q2KD.pdb:18: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/4Q2KD.pdb:18: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/4Q2KD.pdb:18: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/4Q2KD.pdb:18: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/4Q2KD.pdb:21: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/4Q2KD.pdb:21: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/4Q2KD.pdb:23: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/4Q2KD.pdb:23: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/4Q2KD.pdb:23: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/4Q2KD.pdb:23: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/4Q2KD.pdb:25: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/4Q2KD.pdb:25: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/4Q2KD.pdb:25: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/4Q2KD.pdb:25: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/4Q2KD.pdb:26: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/4Q2KD.pdb:164: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/4Q2KD.pdb:165: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/4Q2KD.pdb:166: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/4Q2KD.pdb:167: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/4Q2KD.pdb:168: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/4Q2KD.pdb:169: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/4Q2KD.pdb:221: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/4Q2KD.pdb:222: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/4Q2KD.pdb:223: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/4Q2KD.pdb:224: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/4Q2KD.pdb:225: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/4Q2KD.pdb:226: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/4Q2KD.pdb:318: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/4Q2KD.pdb:319: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/4Q2KD.pdb:320: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/4Q2KD.pdb:321: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/4Q2KD.pdb:322: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/4Q2KD.pdb:323: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/4Q2KD.pdb:451: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/4Q2KD.pdb:452: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/4Q2KD.pdb:453: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/4Q2KD.pdb:454: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/4Q2KD.pdb:455: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/4Q2KD.pdb:456: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/4Q2KD.pdb:536: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/4Q2KD.pdb:537: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/4Q2KD.pdb:538: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/4Q2KD.pdb:539: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/4Q2KD.pdb:540: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/4Q2KD.pdb:541: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/4Q2KD.pdb:542: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/4Q2KD.pdb:543: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/4Q2KD.pdb:544: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/4Q2KD.pdb:545: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/4Q2KD.pdb:546: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/4Q2KD.pdb:547: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/4Q2KD.pdb:548: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/4Q2KD.pdb:549: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/4Q2KD.pdb:550: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/4Q2KD.pdb:551: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/4Q2KD.pdb:552: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/4Q2KD.pdb:671: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/4Q2KD.pdb:672: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/4Q2KD.pdb:673: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/4Q2KD.pdb:674: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/4Q2KD.pdb:675: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/4Q2KD.pdb:676: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/4Q2KD.pdb:760: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/4Q2KD.pdb:761: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/4Q2KD.pdb:762: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/4Q2KD.pdb:763: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/4Q2KD.pdb:764: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/4Q2KD.pdb:765: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/4Q2KD.pdb:783: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/4Q2KD.pdb:784: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/4Q2KD.pdb:785: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/4Q2KD.pdb:786: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/4Q2KD.pdb:787: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/4Q2KD.pdb:788: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/4Q2KD.pdb:800: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/4Q2KD.pdb:801: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/4Q2KD.pdb:802: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/4Q2KD.pdb:803: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/4Q2KD.pdb:804: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/4Q2KD.pdb:805: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/4Q2KD.pdb:829: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/4Q2KD.pdb:830: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/4Q2KD.pdb:831: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/4Q2KD.pdb:832: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/4Q2KD.pdb:833: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/4Q2KD.pdb:834: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/4Q2KD.pdb:868: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/4Q2KD.pdb:869: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/4Q2KD.pdb:870: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/4Q2KD.pdb:871: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/4Q2KD.pdb:872: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/4Q2KD.pdb:873: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/4Q2KD.pdb:879: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/4Q2KD.pdb:880: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/4Q2KD.pdb:881: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/4Q2KD.pdb:882: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/4Q2KD.pdb:883: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/4Q2KD.pdb:884: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/4Q2KD.pdb:1099: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/4Q2KD.pdb:1100: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/4Q2KD.pdb:1101: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/4Q2KD.pdb:1102: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/4Q2KD.pdb:1103: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/4Q2KD.pdb:1104: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/4Q2KD.pdb:1136: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/4Q2KD.pdb:1137: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/4Q2KD.pdb:1138: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/4Q2KD.pdb:1139: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/4Q2KD.pdb:1140: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/4Q2KD.pdb:1141: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/4Q2KD.pdb:1301: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/4Q2KD.pdb:1302: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/4Q2KD.pdb:1303: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/4Q2KD.pdb:1304: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/4Q2KD.pdb:1305: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/4Q2KD.pdb:1306: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/4Q2KD.pdb:1318: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/4Q2KD.pdb:1319: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/4Q2KD.pdb:1320: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/4Q2KD.pdb:1321: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/4Q2KD.pdb:1322: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/4Q2KD.pdb:1323: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/4Q2KD.pdb:1324: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/4Q2KD.pdb:1325: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/4Q2KD.pdb:1326: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/4Q2KD.pdb:1327: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/4Q2KD.pdb:1328: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/4Q2KD.pdb:1329: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/4Q2KD.pdb:1356: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/4Q2KD.pdb:1357: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/4Q2KD.pdb:1358: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/4Q2KD.pdb:1359: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/4Q2KD.pdb:1360: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/4Q2KD.pdb:1361: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/4Q2KD.pdb:1488: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/4Q2KD.pdb:1489: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/4Q2KD.pdb:1490: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/4Q2KD.pdb:1491: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/4Q2KD.pdb:1492: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/4Q2KD.pdb:1493: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/4Q2KD.pdb:1512: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/4Q2KD.pdb:1513: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/4Q2KD.pdb:1514: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/4Q2KD.pdb:1515: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/4Q2KD.pdb:1516: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/4Q2KD.pdb:1517: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/4Q2KD.pdb:1518: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/4Q2KD.pdb:1519: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/4Q2KD.pdb:1520: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/4Q2KD.pdb:1521: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/4Q2KD.pdb:1522: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/4Q2KD.pdb:1523: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/4Q2KD.pdb:1537: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/4Q2KD.pdb:1538: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/4Q2KD.pdb:1539: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/4Q2KD.pdb:1540: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/4Q2KD.pdb:1541: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/4Q2KD.pdb:1542: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/4Q2KD.pdb:1550: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/4Q2KD.pdb:1551: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/4Q2KD.pdb:1552: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/4Q2KD.pdb:1553: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/4Q2KD.pdb:1554: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/4Q2KD.pdb:1555: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2HEY4.pdb:10: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2HEY4.pdb:12: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2HEY4.pdb:12: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2HEY4.pdb:12: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2HEY4.pdb:66: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2HEY4.pdb:67: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2HEY4.pdb:68: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2HEY4.pdb:69: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2HEY4.pdb:70: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2HEY4.pdb:71: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2HEY4.pdb:249: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2HEY4.pdb:250: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2HEY4.pdb:251: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2HEY4.pdb:252: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2HEY4.pdb:253: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2HEY4.pdb:254: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2HEY4.pdb:263: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2HEY4.pdb:264: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2HEY4.pdb:265: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2HEY4.pdb:266: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2HEY4.pdb:267: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2HEY4.pdb:268: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2HEY4.pdb:269: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2HEY4.pdb:270: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2HEY4.pdb:271: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2HEY4.pdb:272: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2HEY4.pdb:273: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2HEY4.pdb:274: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1XU12.pdb:10: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1XU12.pdb:11: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1XU12.pdb:11: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1XU12.pdb:13: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1XU12.pdb:14: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1XU12.pdb:15: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1XU12.pdb:16: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1XU12.pdb:17: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1XU12.pdb:18: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1XU12.pdb:166: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1XU12.pdb:167: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1XU12.pdb:168: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1XU12.pdb:169: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1XU12.pdb:170: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1XU12.pdb:171: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1XU12.pdb:183: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1XU12.pdb:184: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1XU12.pdb:185: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1XU12.pdb:186: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1XU12.pdb:187: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1XU12.pdb:188: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc2.pdb:10: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc2.pdb:10: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc2.pdb:10: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc2.pdb:12: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc2.pdb:12: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc2.pdb:13: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc2.pdb:13: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc2.pdb:13: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc2.pdb:14: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc2.pdb:14: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc2.pdb:15: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc2.pdb:15: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc2.pdb:15: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc2.pdb:16: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc2.pdb:16: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc2.pdb:16: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc2.pdb:17: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc2.pdb:18: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc2.pdb:18: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc2.pdb:18: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc2.pdb:18: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc2.pdb:19: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc2.pdb:19: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc2.pdb:20: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc2.pdb:21: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc2.pdb:21: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc2.pdb:23: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc2.pdb:24: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc2.pdb:25: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc2.pdb:25: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc2.pdb:26: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc2.pdb:26: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc2.pdb:27: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc2.pdb:28: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc2.pdb:28: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc2.pdb:28: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc2.pdb:28: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc2.pdb:28: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc2.pdb:29: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc2.pdb:29: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc2.pdb:30: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc2.pdb:31: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc2.pdb:31: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc2.pdb:32: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc2.pdb:32: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc2.pdb:35: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc2.pdb:40: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc2.pdb:41: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc2.pdb:42: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc2.pdb:43: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc2.pdb:44: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc2.pdb:45: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc2.pdb:95: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc2.pdb:96: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc2.pdb:97: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc2.pdb:98: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc2.pdb:99: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc2.pdb:100: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc2.pdb:289: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc2.pdb:290: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc2.pdb:291: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc2.pdb:292: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc2.pdb:293: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc2.pdb:294: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc2.pdb:295: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc2.pdb:296: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc2.pdb:297: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc2.pdb:298: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc2.pdb:299: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc2.pdb:300: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc2.pdb:349: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc2.pdb:350: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc2.pdb:351: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc2.pdb:352: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc2.pdb:353: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc2.pdb:354: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc2.pdb:355: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc2.pdb:356: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc2.pdb:357: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc2.pdb:358: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc2.pdb:359: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc2.pdb:360: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc2.pdb:389: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc2.pdb:390: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc2.pdb:391: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc2.pdb:392: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc2.pdb:393: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc2.pdb:394: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc2.pdb:473: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc2.pdb:474: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc2.pdb:475: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc2.pdb:476: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc2.pdb:477: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc2.pdb:478: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc2.pdb:488: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc2.pdb:489: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc2.pdb:490: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc2.pdb:491: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc2.pdb:492: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc2.pdb:493: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc2.pdb:533: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc2.pdb:534: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc2.pdb:535: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc2.pdb:536: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc2.pdb:537: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc2.pdb:538: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc2.pdb:569: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc2.pdb:570: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc2.pdb:571: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc2.pdb:572: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc2.pdb:573: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc2.pdb:574: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc2.pdb:583: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc2.pdb:584: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc2.pdb:585: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc2.pdb:586: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc2.pdb:587: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc2.pdb:588: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc2.pdb:617: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc2.pdb:618: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc2.pdb:619: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc2.pdb:620: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc2.pdb:621: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc2.pdb:622: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc2.pdb:623: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc2.pdb:624: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc2.pdb:625: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc2.pdb:626: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc2.pdb:627: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc2.pdb:628: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc2.pdb:629: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc2.pdb:630: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc2.pdb:631: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc2.pdb:632: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc2.pdb:633: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc2.pdb:634: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc2.pdb:695: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc2.pdb:696: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc2.pdb:697: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc2.pdb:698: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc2.pdb:699: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc2.pdb:700: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc2.pdb:779: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc2.pdb:780: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc2.pdb:781: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc2.pdb:782: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc2.pdb:783: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc2.pdb:784: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc2.pdb:815: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc2.pdb:816: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc2.pdb:817: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc2.pdb:818: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc2.pdb:819: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc2.pdb:820: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc2.pdb:821: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc2.pdb:822: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc2.pdb:823: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc2.pdb:824: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc2.pdb:825: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc2.pdb:826: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc2.pdb:827: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc2.pdb:828: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc2.pdb:829: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc2.pdb:830: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc2.pdb:831: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc2.pdb:832: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc2.pdb:868: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc2.pdb:869: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc2.pdb:870: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc2.pdb:871: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc2.pdb:872: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc2.pdb:873: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc2.pdb:945: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc2.pdb:946: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc2.pdb:947: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc2.pdb:948: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc2.pdb:949: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc2.pdb:950: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc2.pdb:988: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc2.pdb:989: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc2.pdb:990: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc2.pdb:991: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc2.pdb:992: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc2.pdb:993: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc2.pdb:1090: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc2.pdb:1091: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc2.pdb:1092: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc2.pdb:1093: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc2.pdb:1094: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc2.pdb:1095: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc2.pdb:1112: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc2.pdb:1113: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc2.pdb:1114: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc2.pdb:1115: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc2.pdb:1116: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc2.pdb:1117: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc2.pdb:1324: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc2.pdb:1325: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc2.pdb:1326: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc2.pdb:1327: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc2.pdb:1328: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc2.pdb:1329: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc2.pdb:1460: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc2.pdb:1461: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc2.pdb:1462: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc2.pdb:1463: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc2.pdb:1464: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc2.pdb:1465: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc2.pdb:1505: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc2.pdb:1506: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc2.pdb:1507: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc2.pdb:1508: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc2.pdb:1509: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc2.pdb:1510: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc2.pdb:1538: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc2.pdb:1539: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc2.pdb:1540: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc2.pdb:1541: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc2.pdb:1542: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc2.pdb:1543: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc2.pdb:1679: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc2.pdb:1680: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc2.pdb:1681: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc2.pdb:1682: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc2.pdb:1683: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc2.pdb:1684: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc2.pdb:1737: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc2.pdb:1738: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc2.pdb:1739: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc2.pdb:1740: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc2.pdb:1741: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc2.pdb:1742: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc2.pdb:1752: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc2.pdb:1753: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc2.pdb:1754: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc2.pdb:1755: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc2.pdb:1756: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc2.pdb:1757: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc2.pdb:1758: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc2.pdb:1759: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc2.pdb:1760: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc2.pdb:1761: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc2.pdb:1762: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc2.pdb:1763: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc2.pdb:1764: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc2.pdb:1765: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc2.pdb:1766: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc2.pdb:1767: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc2.pdb:1768: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc2.pdb:1769: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc2.pdb:1770: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc2.pdb:1771: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc2.pdb:1772: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc2.pdb:1773: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc2.pdb:1774: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc2.pdb:1775: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc2.pdb:1834: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc2.pdb:1835: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc2.pdb:1836: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc2.pdb:1837: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc2.pdb:1838: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc2.pdb:1839: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc2.pdb:1867: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc2.pdb:1868: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc2.pdb:1869: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc2.pdb:1870: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc2.pdb:1871: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc2.pdb:1872: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc2.pdb:1917: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc2.pdb:1918: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc2.pdb:1919: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc2.pdb:1920: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc2.pdb:1921: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc2.pdb:1922: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc2.pdb:2039: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc2.pdb:2040: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc2.pdb:2041: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc2.pdb:2042: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc2.pdb:2043: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc2.pdb:2044: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc2.pdb:2056: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc2.pdb:2057: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc2.pdb:2058: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc2.pdb:2059: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc2.pdb:2060: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc2.pdb:2061: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc2.pdb:2104: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc2.pdb:2105: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc2.pdb:2106: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc2.pdb:2107: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc2.pdb:2108: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc2.pdb:2109: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc2.pdb:2110: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc2.pdb:2111: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc2.pdb:2112: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc2.pdb:2113: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc2.pdb:2114: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc2.pdb:2115: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc2.pdb:2325: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc2.pdb:2326: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc2.pdb:2327: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc2.pdb:2328: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc2.pdb:2329: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc2.pdb:2330: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3ALQ3.pdb:10: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3ALQ3.pdb:12: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3ALQ3.pdb:94: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3ALQ3.pdb:95: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3ALQ3.pdb:96: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3ALQ3.pdb:97: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3ALQ3.pdb:98: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3ALQ3.pdb:99: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3ALQ3.pdb:302: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3ALQ3.pdb:303: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3ALQ3.pdb:304: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3ALQ3.pdb:305: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3ALQ3.pdb:306: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3ALQ3.pdb:307: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/wublast.pl:72: SOM ==> SOME
data/t-coffee-13.41.0.28bdc39+dfsg/example/han_solo.html:19: wee ==> we
data/t-coffee-13.41.0.28bdc39+dfsg/example/han_solo.html:19: ND ==> AND, 2ND
data/t-coffee-13.41.0.28bdc39+dfsg/example/1XU21.pdb:10: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1XU21.pdb:10: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1XU21.pdb:11: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1XU21.pdb:11: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1XU21.pdb:19: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1XU21.pdb:20: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1XU21.pdb:21: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1XU21.pdb:22: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1XU21.pdb:23: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1XU21.pdb:24: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1XU21.pdb:82: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1XU21.pdb:83: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1XU21.pdb:84: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1XU21.pdb:85: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1XU21.pdb:86: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1XU21.pdb:87: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1XU21.pdb:180: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1XU21.pdb:181: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1XU21.pdb:182: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1XU21.pdb:183: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1XU21.pdb:184: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1XU21.pdb:185: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1XU21.pdb:186: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1XU21.pdb:187: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1XU21.pdb:188: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1XU21.pdb:189: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1XU21.pdb:190: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1XU21.pdb:191: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1AE5A.pdb:11: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1AE5A.pdb:13: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1AE5A.pdb:13: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1AE5A.pdb:13: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1AE5A.pdb:14: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1AE5A.pdb:15: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1AE5A.pdb:15: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1AE5A.pdb:15: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1AE5A.pdb:15: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1AE5A.pdb:17: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1AE5A.pdb:17: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1AE5A.pdb:19: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1AE5A.pdb:20: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1AE5A.pdb:20: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1AE5A.pdb:24: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1AE5A.pdb:24: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1AE5A.pdb:156: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1AE5A.pdb:157: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1AE5A.pdb:158: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1AE5A.pdb:159: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1AE5A.pdb:160: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1AE5A.pdb:161: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1AE5A.pdb:336: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1AE5A.pdb:337: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1AE5A.pdb:338: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1AE5A.pdb:339: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1AE5A.pdb:340: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1AE5A.pdb:341: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1AE5A.pdb:368: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1AE5A.pdb:369: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1AE5A.pdb:370: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1AE5A.pdb:371: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1AE5A.pdb:372: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1AE5A.pdb:373: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1AE5A.pdb:392: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1AE5A.pdb:393: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1AE5A.pdb:394: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1AE5A.pdb:395: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1AE5A.pdb:396: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1AE5A.pdb:397: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1AE5A.pdb:526: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1AE5A.pdb:527: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1AE5A.pdb:528: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1AE5A.pdb:529: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1AE5A.pdb:530: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1AE5A.pdb:531: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1AE5A.pdb:570: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1AE5A.pdb:571: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1AE5A.pdb:572: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1AE5A.pdb:573: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1AE5A.pdb:574: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1AE5A.pdb:575: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1AE5A.pdb:584: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1AE5A.pdb:585: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1AE5A.pdb:586: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1AE5A.pdb:587: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1AE5A.pdb:588: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1AE5A.pdb:589: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1AE5A.pdb:590: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1AE5A.pdb:591: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1AE5A.pdb:592: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1AE5A.pdb:593: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1AE5A.pdb:594: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1AE5A.pdb:595: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1AE5A.pdb:604: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1AE5A.pdb:605: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1AE5A.pdb:606: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1AE5A.pdb:607: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1AE5A.pdb:608: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1AE5A.pdb:609: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1AE5A.pdb:813: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1AE5A.pdb:814: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1AE5A.pdb:815: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1AE5A.pdb:816: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1AE5A.pdb:817: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1AE5A.pdb:818: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1AE5A.pdb:819: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1AE5A.pdb:820: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1AE5A.pdb:821: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1AE5A.pdb:822: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1AE5A.pdb:823: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1AE5A.pdb:824: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1AE5A.pdb:1006: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1AE5A.pdb:1007: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1AE5A.pdb:1008: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1AE5A.pdb:1009: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1AE5A.pdb:1010: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1AE5A.pdb:1011: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1AE5A.pdb:1032: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1AE5A.pdb:1033: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1AE5A.pdb:1034: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1AE5A.pdb:1035: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1AE5A.pdb:1036: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1AE5A.pdb:1037: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1AE5A.pdb:1065: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1AE5A.pdb:1066: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1AE5A.pdb:1067: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1AE5A.pdb:1068: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1AE5A.pdb:1069: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1AE5A.pdb:1070: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1AE5A.pdb:1443: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1AE5A.pdb:1444: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1AE5A.pdb:1445: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1AE5A.pdb:1446: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1AE5A.pdb:1447: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1AE5A.pdb:1448: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1AE5A.pdb:1460: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1AE5A.pdb:1461: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1AE5A.pdb:1462: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1AE5A.pdb:1463: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1AE5A.pdb:1464: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1AE5A.pdb:1465: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/blastpgp.pl:68: SOM ==> SOME
data/t-coffee-13.41.0.28bdc39+dfsg/example/1EXTA.pdb:11: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1EXTA.pdb:118: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1EXTA.pdb:119: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1EXTA.pdb:120: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1EXTA.pdb:121: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1EXTA.pdb:122: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1EXTA.pdb:123: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1GVZA.pdb:10: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1GVZA.pdb:13: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1GVZA.pdb:14: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1GVZA.pdb:15: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1GVZA.pdb:15: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1GVZA.pdb:16: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1GVZA.pdb:18: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1GVZA.pdb:19: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1GVZA.pdb:19: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1GVZA.pdb:20: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1GVZA.pdb:21: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1GVZA.pdb:22: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1GVZA.pdb:23: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1GVZA.pdb:23: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1GVZA.pdb:24: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1GVZA.pdb:24: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1GVZA.pdb:27: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1GVZA.pdb:109: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1GVZA.pdb:110: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1GVZA.pdb:111: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1GVZA.pdb:112: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1GVZA.pdb:113: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1GVZA.pdb:114: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1GVZA.pdb:370: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1GVZA.pdb:371: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1GVZA.pdb:372: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1GVZA.pdb:373: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1GVZA.pdb:374: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1GVZA.pdb:375: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1GVZA.pdb:484: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1GVZA.pdb:485: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1GVZA.pdb:486: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1GVZA.pdb:487: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1GVZA.pdb:488: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1GVZA.pdb:489: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1GVZA.pdb:582: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1GVZA.pdb:583: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1GVZA.pdb:584: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1GVZA.pdb:585: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1GVZA.pdb:586: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1GVZA.pdb:587: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1GVZA.pdb:596: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1GVZA.pdb:597: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1GVZA.pdb:598: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1GVZA.pdb:599: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1GVZA.pdb:600: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1GVZA.pdb:601: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1GVZA.pdb:700: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1GVZA.pdb:701: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1GVZA.pdb:702: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1GVZA.pdb:703: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1GVZA.pdb:704: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1GVZA.pdb:705: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1GVZA.pdb:942: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1GVZA.pdb:943: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1GVZA.pdb:944: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1GVZA.pdb:945: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1GVZA.pdb:946: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1GVZA.pdb:947: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1GVZA.pdb:980: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1GVZA.pdb:981: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1GVZA.pdb:982: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1GVZA.pdb:983: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1GVZA.pdb:984: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1GVZA.pdb:985: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1GVZA.pdb:1024: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1GVZA.pdb:1025: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1GVZA.pdb:1026: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1GVZA.pdb:1027: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1GVZA.pdb:1028: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1GVZA.pdb:1029: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1GVZA.pdb:1078: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1GVZA.pdb:1079: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1GVZA.pdb:1080: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1GVZA.pdb:1081: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1GVZA.pdb:1082: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1GVZA.pdb:1083: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1GVZA.pdb:1170: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1GVZA.pdb:1171: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1GVZA.pdb:1172: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1GVZA.pdb:1173: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1GVZA.pdb:1174: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1GVZA.pdb:1175: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1GVZA.pdb:1341: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1GVZA.pdb:1342: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1GVZA.pdb:1343: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1GVZA.pdb:1344: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1GVZA.pdb:1345: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1GVZA.pdb:1346: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1GVZA.pdb:1351: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1GVZA.pdb:1352: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1GVZA.pdb:1353: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1GVZA.pdb:1354: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1GVZA.pdb:1355: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1GVZA.pdb:1356: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1GVZA.pdb:1391: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1GVZA.pdb:1392: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1GVZA.pdb:1393: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1GVZA.pdb:1394: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1GVZA.pdb:1395: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1GVZA.pdb:1396: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1GVZA.pdb:1490: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1GVZA.pdb:1491: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1GVZA.pdb:1492: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1GVZA.pdb:1493: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1GVZA.pdb:1494: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1GVZA.pdb:1495: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1GVZA.pdb:1526: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1GVZA.pdb:1527: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1GVZA.pdb:1528: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1GVZA.pdb:1529: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1GVZA.pdb:1530: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1GVZA.pdb:1531: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1GVZA.pdb:1757: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1GVZA.pdb:1758: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1GVZA.pdb:1759: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1GVZA.pdb:1760: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1GVZA.pdb:1761: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1GVZA.pdb:1762: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1GVZA.pdb:1763: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3IJ22.pdb:10: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3IJ22.pdb:10: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3IJ22.pdb:10: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3IJ22.pdb:12: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3IJ22.pdb:12: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3IJ22.pdb:43: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3IJ22.pdb:44: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3IJ22.pdb:45: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3IJ22.pdb:46: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3IJ22.pdb:47: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3IJ22.pdb:48: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3IJ22.pdb:74: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3IJ22.pdb:75: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3IJ22.pdb:76: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3IJ22.pdb:77: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3IJ22.pdb:78: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3IJ22.pdb:79: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3IJ22.pdb:102: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3IJ22.pdb:103: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3IJ22.pdb:104: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3IJ22.pdb:105: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3IJ22.pdb:106: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3IJ22.pdb:107: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3IJ22.pdb:215: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3IJ22.pdb:216: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3IJ22.pdb:217: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3IJ22.pdb:218: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3IJ22.pdb:219: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3IJ22.pdb:220: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3IJ22.pdb:229: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3IJ22.pdb:230: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3IJ22.pdb:231: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3IJ22.pdb:232: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3IJ22.pdb:233: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3IJ22.pdb:234: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/dalilite.pl:51: SOM ==> SOME
data/t-coffee-13.41.0.28bdc39+dfsg/example/dalilite.pl:187: identifer ==> identifier
data/t-coffee-13.41.0.28bdc39+dfsg/example/dalilite.pl:188: identifer ==> identifier
data/t-coffee-13.41.0.28bdc39+dfsg/example/ncbiblast_lwp.pl:95: missmatch ==> mismatch
data/t-coffee-13.41.0.28bdc39+dfsg/example/ncbiblast_lwp.pl:99: penality ==> penalty
data/t-coffee-13.41.0.28bdc39+dfsg/example/ncbiblast_lwp.pl:106: Compatability ==> Compatibility
data/t-coffee-13.41.0.28bdc39+dfsg/example/ncbiblast_lwp.pl:109: penality ==> penalty
data/t-coffee-13.41.0.28bdc39+dfsg/example/ncbiblast_lwp.pl:309: orginal ==> original
data/t-coffee-13.41.0.28bdc39+dfsg/example/ncbiblast_lwp.pl:836: missmatch ==> mismatch
data/t-coffee-13.41.0.28bdc39+dfsg/example/ncbiblast_lwp.pl:842: Compatability ==> Compatibility
data/t-coffee-13.41.0.28bdc39+dfsg/example/1EXT4.pdb:11: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1EXT4.pdb:11: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1EXT4.pdb:11: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1EXT4.pdb:125: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1EXT4.pdb:126: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1EXT4.pdb:127: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1EXT4.pdb:128: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1EXT4.pdb:129: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1EXT4.pdb:130: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1EXT4.pdb:137: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1EXT4.pdb:138: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1EXT4.pdb:139: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1EXT4.pdb:140: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1EXT4.pdb:141: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1EXT4.pdb:142: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1EXT4.pdb:175: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1EXT4.pdb:176: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1EXT4.pdb:177: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1EXT4.pdb:178: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1EXT4.pdb:179: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1EXT4.pdb:180: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1AZZB.pdb:10: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1AZZB.pdb:12: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1AZZB.pdb:12: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1AZZB.pdb:15: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1AZZB.pdb:16: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1AZZB.pdb:16: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1AZZB.pdb:18: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1AZZB.pdb:19: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1AZZB.pdb:19: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1AZZB.pdb:20: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1AZZB.pdb:21: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1AZZB.pdb:22: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1AZZB.pdb:23: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1AZZB.pdb:24: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1AZZB.pdb:94: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1AZZB.pdb:95: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1AZZB.pdb:96: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1AZZB.pdb:97: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1AZZB.pdb:98: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1AZZB.pdb:99: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1AZZB.pdb:238: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1AZZB.pdb:239: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1AZZB.pdb:240: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1AZZB.pdb:241: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1AZZB.pdb:242: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1AZZB.pdb:243: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1AZZB.pdb:260: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1AZZB.pdb:261: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1AZZB.pdb:262: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1AZZB.pdb:263: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1AZZB.pdb:264: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1AZZB.pdb:265: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1AZZB.pdb:537: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1AZZB.pdb:538: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1AZZB.pdb:539: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1AZZB.pdb:540: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1AZZB.pdb:541: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1AZZB.pdb:542: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1AZZB.pdb:630: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1AZZB.pdb:631: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1AZZB.pdb:632: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1AZZB.pdb:633: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1AZZB.pdb:634: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1AZZB.pdb:635: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1AZZB.pdb:662: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1AZZB.pdb:663: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1AZZB.pdb:664: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1AZZB.pdb:665: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1AZZB.pdb:666: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1AZZB.pdb:667: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1AZZB.pdb:837: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1AZZB.pdb:838: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1AZZB.pdb:839: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1AZZB.pdb:840: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1AZZB.pdb:841: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1AZZB.pdb:842: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1AZZB.pdb:959: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1AZZB.pdb:960: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1AZZB.pdb:961: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1AZZB.pdb:962: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1AZZB.pdb:963: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1AZZB.pdb:964: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1AZZB.pdb:973: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1AZZB.pdb:974: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1AZZB.pdb:975: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1AZZB.pdb:976: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1AZZB.pdb:977: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1AZZB.pdb:978: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1AZZB.pdb:1004: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1AZZB.pdb:1005: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1AZZB.pdb:1006: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1AZZB.pdb:1007: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1AZZB.pdb:1008: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1AZZB.pdb:1009: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1AZZB.pdb:1098: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1AZZB.pdb:1099: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1AZZB.pdb:1100: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1AZZB.pdb:1101: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1AZZB.pdb:1102: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1AZZB.pdb:1103: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1AZZB.pdb:1239: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1AZZB.pdb:1240: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1AZZB.pdb:1241: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1AZZB.pdb:1242: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1AZZB.pdb:1243: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1AZZB.pdb:1244: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1AZZB.pdb:1297: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1AZZB.pdb:1298: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1AZZB.pdb:1299: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1AZZB.pdb:1300: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1AZZB.pdb:1301: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1AZZB.pdb:1302: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1AZZB.pdb:1404: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1AZZB.pdb:1405: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1AZZB.pdb:1406: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1AZZB.pdb:1407: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1AZZB.pdb:1408: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1AZZB.pdb:1409: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2EEKA.pdb:10: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2EEKA.pdb:11: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2EEKA.pdb:11: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2EEKA.pdb:12: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2EEKA.pdb:12: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2EEKA.pdb:12: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2EEKA.pdb:13: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2EEKA.pdb:15: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2EEKA.pdb:15: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2EEKA.pdb:15: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2EEKA.pdb:15: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2EEKA.pdb:15: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2EEKA.pdb:15: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2EEKA.pdb:19: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2EEKA.pdb:19: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2EEKA.pdb:19: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2EEKA.pdb:20: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2EEKA.pdb:20: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2EEKA.pdb:21: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2EEKA.pdb:22: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2EEKA.pdb:22: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2EEKA.pdb:23: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2EEKA.pdb:24: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2EEKA.pdb:26: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2EEKA.pdb:103: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2EEKA.pdb:104: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2EEKA.pdb:105: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2EEKA.pdb:106: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2EEKA.pdb:107: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2EEKA.pdb:108: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2EEKA.pdb:149: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2EEKA.pdb:150: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2EEKA.pdb:151: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2EEKA.pdb:152: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2EEKA.pdb:153: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2EEKA.pdb:154: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2EEKA.pdb:171: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2EEKA.pdb:172: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2EEKA.pdb:173: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2EEKA.pdb:174: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2EEKA.pdb:175: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2EEKA.pdb:176: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2EEKA.pdb:228: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2EEKA.pdb:229: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2EEKA.pdb:230: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2EEKA.pdb:231: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2EEKA.pdb:232: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2EEKA.pdb:233: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2EEKA.pdb:249: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2EEKA.pdb:250: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2EEKA.pdb:251: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2EEKA.pdb:252: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2EEKA.pdb:253: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2EEKA.pdb:254: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2EEKA.pdb:300: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2EEKA.pdb:301: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2EEKA.pdb:302: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2EEKA.pdb:303: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2EEKA.pdb:304: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2EEKA.pdb:305: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2EEKA.pdb:353: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2EEKA.pdb:354: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2EEKA.pdb:355: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2EEKA.pdb:356: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2EEKA.pdb:357: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2EEKA.pdb:358: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2EEKA.pdb:536: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2EEKA.pdb:537: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2EEKA.pdb:538: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2EEKA.pdb:539: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2EEKA.pdb:540: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2EEKA.pdb:541: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2EEKA.pdb:542: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2EEKA.pdb:543: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2EEKA.pdb:544: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2EEKA.pdb:545: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2EEKA.pdb:546: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2EEKA.pdb:547: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2EEKA.pdb:548: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2EEKA.pdb:549: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2EEKA.pdb:550: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2EEKA.pdb:551: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2EEKA.pdb:552: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2EEKA.pdb:553: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2EEKA.pdb:554: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2EEKA.pdb:555: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2EEKA.pdb:556: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2EEKA.pdb:557: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2EEKA.pdb:558: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2EEKA.pdb:559: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2EEKA.pdb:623: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2EEKA.pdb:624: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2EEKA.pdb:625: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2EEKA.pdb:626: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2EEKA.pdb:627: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2EEKA.pdb:628: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2EEKA.pdb:629: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2EEKA.pdb:630: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2EEKA.pdb:631: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2EEKA.pdb:632: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2EEKA.pdb:633: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2EEKA.pdb:634: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2EEKA.pdb:937: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2EEKA.pdb:938: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2EEKA.pdb:939: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2EEKA.pdb:940: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2EEKA.pdb:941: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2EEKA.pdb:942: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2EEKA.pdb:988: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2EEKA.pdb:989: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2EEKA.pdb:990: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2EEKA.pdb:991: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2EEKA.pdb:992: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2EEKA.pdb:993: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2EEKA.pdb:994: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2EEKA.pdb:995: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2EEKA.pdb:996: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2EEKA.pdb:997: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2EEKA.pdb:998: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2EEKA.pdb:999: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2EEKA.pdb:1072: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2EEKA.pdb:1073: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2EEKA.pdb:1074: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2EEKA.pdb:1075: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2EEKA.pdb:1076: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2EEKA.pdb:1077: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2EEKA.pdb:1109: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2EEKA.pdb:1110: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2EEKA.pdb:1111: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2EEKA.pdb:1112: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2EEKA.pdb:1113: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2EEKA.pdb:1114: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2EEKA.pdb:1157: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2EEKA.pdb:1158: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2EEKA.pdb:1159: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2EEKA.pdb:1160: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2EEKA.pdb:1161: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2EEKA.pdb:1162: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2EEKA.pdb:1218: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2EEKA.pdb:1219: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2EEKA.pdb:1220: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2EEKA.pdb:1221: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2EEKA.pdb:1222: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2EEKA.pdb:1223: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2EEKA.pdb:1291: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2EEKA.pdb:1292: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2EEKA.pdb:1293: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2EEKA.pdb:1294: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2EEKA.pdb:1295: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2EEKA.pdb:1296: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2EEKA.pdb:1324: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2EEKA.pdb:1325: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2EEKA.pdb:1326: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2EEKA.pdb:1327: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2EEKA.pdb:1328: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2EEKA.pdb:1329: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2EEKA.pdb:1419: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2EEKA.pdb:1420: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2EEKA.pdb:1421: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2EEKA.pdb:1422: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2EEKA.pdb:1423: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2EEKA.pdb:1424: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2EEKA.pdb:1571: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2EEKA.pdb:1572: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2EEKA.pdb:1573: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2EEKA.pdb:1574: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2EEKA.pdb:1575: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2EEKA.pdb:1576: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3ALQ1.pdb:11: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3ALQ1.pdb:11: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3ALQ1.pdb:12: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3ALQ1.pdb:147: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3ALQ1.pdb:148: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3ALQ1.pdb:149: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3ALQ1.pdb:150: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3ALQ1.pdb:151: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3ALQ1.pdb:152: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3ALQ1.pdb:168: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3ALQ1.pdb:169: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3ALQ1.pdb:170: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3ALQ1.pdb:171: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3ALQ1.pdb:172: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3ALQ1.pdb:173: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3ALQ1.pdb:265: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3ALQ1.pdb:266: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3ALQ1.pdb:267: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3ALQ1.pdb:268: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3ALQ1.pdb:269: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3ALQ1.pdb:270: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/chewbacca.html:19: nd ==> and, 2nd
data/t-coffee-13.41.0.28bdc39+dfsg/example/proteases_small.msf:41: DED ==> DEAD
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:393: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:401: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:402: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:404: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:422: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:430: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:431: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:433: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:457: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:461: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:511: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:523: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:565: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:574: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:580: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:595: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:607: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:657: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:660: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:662: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:663: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:664: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:664: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:664: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:664: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:667: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:667: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:668: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:668: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:669: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:670: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:670: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:670: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:670: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:671: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:672: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:674: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:674: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:675: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:676: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:676: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:677: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:679: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:681: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:681: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:681: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:685: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:685: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:688: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:688: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:692: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:692: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:693: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:696: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:696: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:696: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:697: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:697: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:697: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:698: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:698: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:698: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:698: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:701: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:701: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:702: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:702: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:703: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:704: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:704: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:704: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:704: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:705: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:706: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:708: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:708: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:709: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:710: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:710: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:711: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:713: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:715: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:715: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:715: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:719: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:719: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:722: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:722: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:726: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:726: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:727: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:730: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:730: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:730: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:731: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:731: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:731: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:732: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:732: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:732: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:733: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:735: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:736: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:738: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:740: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:740: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:740: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:741: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:741: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:743: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:744: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:744: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:746: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:748: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:750: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:751: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:753: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:754: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:754: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:754: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:758: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:758: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:758: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:759: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:759: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:762: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:762: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:763: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:764: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:764: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:765: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:766: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:766: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:766: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:768: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:771: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:772: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:772: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:772: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:773: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:775: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:776: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:778: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:780: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:780: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:780: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:781: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:781: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:783: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:784: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:784: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:786: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:788: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:790: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:791: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:793: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:794: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:794: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:794: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:798: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:798: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:798: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:799: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:799: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:802: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:802: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:803: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:804: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:804: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:805: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:806: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:806: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:806: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:808: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:811: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:833: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:835: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:835: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:837: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:839: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:841: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:842: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:848: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:850: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:850: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:852: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:854: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:856: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:857: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:865: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:871: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:873: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:885: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:891: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:893: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:894: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:905: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:908: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:910: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:924: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:927: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:929: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:942: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:943: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:948: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:955: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:956: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:961: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:962: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:966: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:968: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:988: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:995: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:1000: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:1008: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:1477: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:1478: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:1479: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:1480: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:1481: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:1482: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:1483: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:1484: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:1485: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:1486: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:1487: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:1488: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:1489: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:1490: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:1491: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:1492: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:1493: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:1494: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:1495: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:1496: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:1497: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:1498: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:1499: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:1500: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:1639: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:1640: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:1641: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:1642: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:1643: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:1644: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:1645: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:1646: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:1647: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:1648: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:1649: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:1650: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:1731: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:1732: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:1733: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:1734: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:1735: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:1736: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:1737: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:1738: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:1739: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:1740: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:1741: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:1742: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:1907: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:1908: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:1909: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:1910: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:1911: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:1912: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:1913: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:1914: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:1915: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:1916: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:1917: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:1918: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:2053: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:2054: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:2055: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:2056: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:2057: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:2058: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:2059: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:2060: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:2061: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:2062: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:2063: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:2064: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:2097: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:2098: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:2099: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:2100: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:2101: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:2102: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:2103: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:2104: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:2105: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:2106: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:2107: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:2108: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:2109: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:2110: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:2111: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:2112: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:2113: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:2114: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:2115: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:2116: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:2117: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:2118: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:2119: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:2120: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:2121: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:2122: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:2123: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:2124: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:2125: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:2126: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:2127: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:2128: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:2129: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:2130: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:2131: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:2132: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:2309: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:2310: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:2311: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:2312: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:2313: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:2314: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:2315: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:2316: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:2317: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:2318: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:2319: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:2320: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:2513: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:2514: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:2515: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:2516: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:2517: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:2518: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:2519: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:2520: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:2521: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:2522: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:2523: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:2524: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:2809: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:2810: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:2811: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:2812: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:2813: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:2814: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:2815: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:2816: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:2817: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:2818: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:2819: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:2820: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:3243: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:3244: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:3245: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:3246: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:3247: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:3248: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:3249: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:3250: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:3251: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:3252: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:3253: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:3254: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:3435: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:3436: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:3437: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:3438: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:3439: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:3440: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:3441: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:3442: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:3443: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:3444: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:3445: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:3446: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:3569: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:3570: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:3571: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:3572: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:3573: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:3574: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:3575: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:3576: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:3577: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:3578: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:3579: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:3580: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:3851: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:3852: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:3853: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:3854: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:3855: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:3856: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:3857: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:3858: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:3859: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:3860: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:3861: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:3862: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:4337: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:4338: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:4339: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:4340: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:4341: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:4342: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:4343: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:4344: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:4345: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:4346: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:4347: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:4348: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:4349: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:4350: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:4351: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:4352: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:4353: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:4354: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:4355: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:4356: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:4357: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:4358: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:4359: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:4360: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:4407: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:4408: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:4409: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:4410: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:4411: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:4412: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:4413: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:4414: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:4415: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:4416: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:4417: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:4418: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:5191: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:5192: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:5197: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:5198: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:5199: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:5200: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:5233: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:5234: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:5239: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:5240: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:5241: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:5242: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:5817: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:5818: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:5819: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:5820: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:5821: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:5822: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:5823: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:5824: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:5825: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:5826: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:5827: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:5828: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:5939: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:5940: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:5941: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:5942: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:5943: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:5944: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:5945: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:5946: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:5947: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:5948: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:5949: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:5950: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:6545: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:6546: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:6547: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:6548: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:6549: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:6550: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:6551: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:6552: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:6553: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:6554: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:6555: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:6556: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:6573: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:6574: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:6575: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:6576: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:6577: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:6578: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:6579: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:6580: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:6581: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:6582: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:6583: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:6584: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:6809: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:6810: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:6811: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:6812: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:6813: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:6814: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:6815: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:6816: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:6817: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:6818: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:6819: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:6820: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:7353: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:7354: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:7355: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:7356: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:7357: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:7358: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:7359: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:7360: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:7361: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:7362: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:7363: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:7364: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:7421: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:7422: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:7423: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:7424: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:7425: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:7426: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:7427: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:7428: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:7429: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:7430: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:7431: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:7432: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:7493: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:7494: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:7495: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:7496: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:7497: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:7498: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:7499: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:7500: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:7501: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:7502: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:7503: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:7504: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:7537: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:7538: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:7539: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:7540: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:7541: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:7542: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:7543: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:7544: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:7545: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:7546: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:7547: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:7548: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:7593: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:7594: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:7595: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:7596: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:7597: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:7598: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:7599: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:7600: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:7601: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:7602: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:7603: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:7604: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:8058: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:8059: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:8060: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:8061: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:8062: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:8063: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:8064: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:8065: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:8066: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:8067: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:8068: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:8069: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:8070: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:8071: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:8072: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:8073: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:8074: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:8075: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:8076: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:8077: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:8078: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:8079: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:8080: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:8081: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:8220: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:8221: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:8222: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:8223: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:8224: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:8225: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:8226: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:8227: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:8228: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:8229: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:8230: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:8231: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:8312: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:8313: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:8314: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:8315: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:8316: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:8317: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:8318: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:8319: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:8320: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:8321: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:8322: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:8323: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:8488: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:8489: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:8490: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:8491: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:8492: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:8493: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:8494: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:8495: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:8496: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:8497: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:8498: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:8499: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:8634: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:8635: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:8636: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:8637: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:8638: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:8639: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:8640: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:8641: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:8642: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:8643: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:8644: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:8645: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:8678: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:8679: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:8680: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:8681: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:8682: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:8683: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:8684: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:8685: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:8686: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:8687: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:8688: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:8689: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:8690: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:8691: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:8692: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:8693: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:8694: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:8695: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:8696: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:8697: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:8698: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:8699: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:8700: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:8701: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:8702: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:8703: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:8704: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:8705: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:8706: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:8707: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:8708: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:8709: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:8710: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:8711: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:8712: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:8713: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:8890: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:8891: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:8892: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:8893: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:8894: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:8895: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:8896: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:8897: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:8898: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:8899: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:8900: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:8901: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:9094: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:9095: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:9096: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:9097: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:9098: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:9099: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:9100: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:9101: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:9102: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:9103: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:9104: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:9105: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:9390: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:9391: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:9392: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:9393: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:9394: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:9395: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:9396: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:9397: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:9398: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:9399: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:9400: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:9401: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:9480: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:9481: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:9482: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:9483: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:9484: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:9485: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:9486: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:9487: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:9488: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:9489: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:9490: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:9491: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:9706: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:9707: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:9708: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:9709: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:9710: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:9711: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:9712: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:9713: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:9714: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:9715: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:9716: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:9717: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:9800: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:9801: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:9802: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:9803: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:9804: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:9805: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:9806: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:9807: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:9808: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:9809: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:9810: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:9811: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:9992: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:9993: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:9994: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:9995: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:9996: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:9997: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:9998: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:9999: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:10000: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:10001: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:10002: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:10003: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:10126: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:10127: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:10128: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:10129: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:10130: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:10131: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:10132: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:10133: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:10134: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:10135: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:10136: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:10137: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:10408: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:10409: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:10410: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:10411: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:10412: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:10413: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:10414: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:10415: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:10416: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:10417: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:10418: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:10419: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:10894: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:10895: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:10896: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:10897: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:10898: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:10899: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:10900: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:10901: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:10902: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:10903: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:10904: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:10905: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:10906: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:10907: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:10908: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:10909: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:10910: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:10911: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:10912: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:10913: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:10914: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:10915: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:10916: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:10917: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:10964: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:10965: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:10966: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:10967: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:10968: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:10969: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:10970: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:10971: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:10972: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:10973: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:10974: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:10975: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:11748: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:11749: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:11750: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:11751: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:11752: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:11753: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:11754: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:11755: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:11756: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:11757: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:11758: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:11759: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:11784: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:11785: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:11786: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:11787: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:11788: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:11789: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:11790: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:11791: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:11792: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:11793: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:11794: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:11795: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:12352: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:12353: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:12354: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:12355: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:12356: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:12357: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:12358: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:12359: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:12360: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:12361: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:12362: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:12363: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:12490: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:12491: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:12492: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:12493: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:12494: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:12495: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:12496: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:12497: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:12498: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:12499: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:12500: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:12501: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:12996: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:12997: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:12998: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:12999: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:13000: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:13001: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:13002: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:13003: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:13004: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:13005: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:13006: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:13007: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:13024: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:13025: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:13026: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:13027: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:13028: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:13029: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:13030: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:13031: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:13032: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:13033: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:13034: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:13035: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:13260: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:13261: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:13262: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:13263: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:13264: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:13265: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:13266: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:13267: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:13268: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:13269: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:13270: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:13271: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:13702: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:13703: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:13708: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:13709: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:13710: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:13711: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:13776: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:13777: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:13778: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:13779: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:13780: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:13781: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:13782: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:13783: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:13784: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:13785: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:13786: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:13787: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:13860: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:13861: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:13862: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:13863: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:13864: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:13865: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:13866: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:13867: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:13868: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:13869: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:13870: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:13871: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:13932: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:13933: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:13938: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:13939: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:13940: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:13941: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:13998: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:13999: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:14000: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:14001: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:14002: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:14003: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:14004: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:14005: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:14006: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:14007: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:14008: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:14009: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:14054: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:14055: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:14056: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:14057: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:14058: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:14059: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:14060: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:14061: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:14062: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:14063: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:14064: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:14065: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:14195: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:14196: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:14197: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:14198: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:14199: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:14200: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:14201: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:14202: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:14203: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:14204: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:14205: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:14206: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:14207: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:14208: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:14209: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:14210: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:14211: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:14212: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:14213: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:14214: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:14215: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:14216: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:14217: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:14218: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:14285: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:14286: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:14287: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:14288: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:14289: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:14290: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:14291: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:14292: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:14293: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:14294: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:14295: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:14296: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:14725: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:14726: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:14727: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:14728: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:14729: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:14730: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:14731: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:14732: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:14733: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:14734: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:14735: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:14736: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:15005: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:15006: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:15011: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:15012: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:15013: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:15014: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:15355: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:15356: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:15357: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:15358: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:15359: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:15360: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:15361: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:15362: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:15363: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:15364: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:15365: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:15366: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:15699: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:15700: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:15701: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:15702: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:15703: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:15704: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:15705: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:15706: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:15707: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:15708: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:15709: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:15710: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:15807: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:15808: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:15809: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:15810: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:15811: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:15812: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:15813: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:15814: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:15815: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:15816: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:15817: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:15818: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:15833: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:15834: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:15835: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:15836: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:15837: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:15838: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:15839: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:15840: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:15841: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:15842: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:15843: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:15844: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:15891: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:15892: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:15893: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:15894: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:15895: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:15896: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:15897: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:15898: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:15899: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:15900: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:15901: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:15902: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:16083: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:16084: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:16085: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:16086: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:16087: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:16088: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:16089: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:16090: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:16091: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:16092: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:16093: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:16094: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:16467: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:16468: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:16469: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:16470: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:16471: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:16472: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:16473: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:16474: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:16475: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:16476: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:16477: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:16478: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:16579: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:16580: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:16581: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:16582: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:16583: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:16584: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:16585: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:16586: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:16587: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:16588: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:16589: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:16590: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:16591: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:16592: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:16593: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:16594: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:16595: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:16596: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:16597: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:16598: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:16599: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:16600: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:16601: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:16602: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:16927: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:16928: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:16929: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:16930: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:16931: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:16932: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:16933: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:16934: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:16935: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:16936: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:16937: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:16938: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:17327: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:17328: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:17329: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:17330: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:17331: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:17332: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:17333: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:17334: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:17335: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:17336: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:17337: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:17338: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:17885: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:17886: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:17887: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:17888: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:17889: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:17890: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:17891: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:17892: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:17893: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:17894: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:17895: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:17896: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:18037: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:18038: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:18039: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:18040: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:18041: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:18042: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:18043: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:18044: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:18045: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:18046: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:18047: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:18048: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:18491: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:18492: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:18493: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:18494: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:18495: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:18496: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:18497: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:18498: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:18499: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:18500: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:18501: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:18502: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:18557: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:18558: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:18559: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:18560: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:18561: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:18562: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:18563: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:18564: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:18565: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:18566: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:18567: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:18568: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:18639: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:18640: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:18641: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:18642: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:18643: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:18644: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:18645: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:18646: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:18647: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:18648: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:18649: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:18650: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:18667: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:18668: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:18669: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:18670: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:18671: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:18672: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:18673: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:18674: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:18675: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:18676: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:18677: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:18678: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:19395: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:19396: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:19397: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:19398: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:19399: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:19400: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:19401: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:19402: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:19403: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:19404: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:19405: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:19406: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:19429: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:19430: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:19431: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:19432: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:19433: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:19434: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:19435: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:19436: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:19437: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:19438: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:19439: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:19440: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:19499: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:19500: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:19501: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:19502: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:19503: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:19504: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:19505: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:19506: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:19507: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:19508: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:19509: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:19510: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:19617: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:19618: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:19619: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:19620: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:19621: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:19622: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:19623: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:19624: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:19625: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:19626: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:19627: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:19628: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:19697: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:19698: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:19699: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:19700: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:19701: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:19702: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:19703: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:19704: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:19705: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:19706: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:19707: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:19708: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:20259: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:20260: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:20261: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:20262: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:20263: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:20264: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:20265: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:20266: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:20267: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:20268: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:20269: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:20270: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:20489: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:20490: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:20491: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:20492: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:20493: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:20494: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:20495: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:20496: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:20497: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:20498: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:20499: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:20500: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:20845: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:20846: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:20847: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:20848: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:20849: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:20850: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:20851: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:20852: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:20853: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:20854: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:20855: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:20856: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:20885: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:20886: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:20887: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:20888: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:20889: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:20890: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:20891: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:20892: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:20893: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:20894: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:20895: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:20896: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:21013: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:21014: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:21015: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:21016: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:21017: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:21018: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:21019: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:21020: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:21021: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:21022: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:21023: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:21024: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:21147: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:21148: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:21149: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:21150: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:21151: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:21152: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:21153: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:21154: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:21155: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:21156: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:21157: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:21158: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:21235: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:21236: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:21237: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:21238: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:21239: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:21240: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:21241: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:21242: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:21243: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:21244: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:21245: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:21246: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:21277: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:21278: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:21279: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:21280: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:21281: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:21282: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:21283: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:21284: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:21285: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:21286: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:21287: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:21288: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:21517: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:21518: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:21519: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:21520: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:21521: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:21522: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:21523: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:21524: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:21525: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:21526: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:21527: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:21528: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:22109: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:22110: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:22111: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:22112: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:22113: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:22114: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:22115: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:22116: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:22117: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:22118: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:22119: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:22120: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:22402: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:22403: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:22404: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:22405: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:22406: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:22407: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:22408: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:22409: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:22410: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:22411: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:22412: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:22413: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:22414: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:22415: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:22416: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:22417: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:22418: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:22419: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:22420: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:22421: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:22422: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:22423: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:22424: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:22425: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:22462: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:22463: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:22464: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:22465: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:22466: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:22467: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:22468: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:22469: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:22470: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:22471: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:22472: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:22473: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:22902: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:22903: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:22904: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:22905: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:22906: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:22907: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:22908: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:22909: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:22910: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:22911: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:22912: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:22913: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:23172: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:23173: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:23174: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:23175: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:23176: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:23177: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:23178: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:23179: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:23180: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:23181: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:23182: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:23183: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:23516: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:23517: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:23518: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:23519: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:23520: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:23521: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:23522: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:23523: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:23524: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:23525: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:23526: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:23527: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:23860: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:23861: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:23862: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:23863: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:23864: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:23865: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:23866: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:23867: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:23868: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:23869: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:23870: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:23871: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:23968: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:23969: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:23970: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:23971: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:23972: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:23973: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:23974: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:23975: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:23976: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:23977: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:23978: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:23979: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:23994: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:23995: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:23996: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:23997: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:23998: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:23999: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:24000: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:24001: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:24002: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:24003: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:24004: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:24005: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:24052: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:24053: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:24054: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:24055: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:24056: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:24057: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:24058: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:24059: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:24060: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:24061: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:24062: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:24063: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:24244: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:24245: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:24246: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:24247: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:24248: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:24249: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:24250: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:24251: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:24252: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:24253: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:24254: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:24255: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:24628: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:24629: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:24630: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:24631: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:24632: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:24633: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:24634: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:24635: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:24636: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:24637: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:24638: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:24639: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:24740: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:24741: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:24742: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:24743: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:24744: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:24745: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:24746: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:24747: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:24748: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:24749: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:24750: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:24751: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:24752: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:24753: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:24754: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:24755: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:24756: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:24757: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:24758: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:24759: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:24760: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:24761: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:24762: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:24763: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:25074: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:25075: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:25076: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:25077: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:25078: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:25079: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:25080: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:25081: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:25082: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:25083: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:25084: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:25085: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:25474: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:25475: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:25476: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:25477: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:25478: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:25479: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:25480: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:25481: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:25482: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:25483: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:25484: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:25485: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:26032: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:26033: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:26034: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:26035: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:26036: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:26037: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:26038: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:26039: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:26040: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:26041: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:26042: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:26043: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:26184: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:26185: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:26186: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:26187: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:26188: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:26189: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:26190: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:26191: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:26192: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:26193: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:26194: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:26195: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:26638: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:26639: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:26640: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:26641: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:26642: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:26643: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:26644: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:26645: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:26646: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:26647: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:26648: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:26649: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:26704: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:26705: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:26706: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:26707: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:26708: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:26709: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:26710: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:26711: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:26712: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:26713: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:26714: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:26715: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:26786: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:26787: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:26788: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:26789: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:26790: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:26791: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:26792: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:26793: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:26794: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:26795: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:26796: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:26797: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:26814: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:26815: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:26816: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:26817: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:26818: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:26819: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:26820: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:26821: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:26822: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:26823: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:26824: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:26825: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:27542: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:27543: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:27544: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:27545: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:27546: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:27547: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:27548: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:27549: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:27550: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:27551: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:27552: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:27553: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:27576: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:27577: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:27578: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:27579: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:27580: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:27581: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:27582: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:27583: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:27584: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:27585: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:27586: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:27587: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:27646: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:27647: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:27648: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:27649: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:27650: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:27651: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:27652: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:27653: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:27654: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:27655: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:27656: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:27657: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:27764: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:27765: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:27766: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:27767: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:27768: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:27769: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:27770: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:27771: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:27772: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:27773: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:27774: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:27775: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:27844: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:27845: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:27846: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:27847: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:27848: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:27849: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:27850: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:27851: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:27852: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:27853: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:27854: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:27855: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:28406: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:28407: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:28412: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:28413: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:28414: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:28415: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:28442: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:28443: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:28444: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:28445: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:28446: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:28447: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:28448: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:28449: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:28450: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:28451: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:28452: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:28453: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:28630: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:28631: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:28632: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:28633: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:28634: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:28635: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:28636: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:28637: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:28638: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:28639: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:28640: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:28641: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:28964: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:28965: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:28966: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:28967: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:28968: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:28969: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:28970: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:28971: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:28972: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:28973: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:28974: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:28975: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:29004: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:29005: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:29006: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:29007: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:29008: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:29009: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:29010: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:29011: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:29012: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:29013: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:29014: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:29015: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:29132: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:29133: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:29134: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:29135: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:29136: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:29137: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:29138: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:29139: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:29140: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:29141: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:29142: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:29143: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:29266: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:29267: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:29268: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:29269: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:29270: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:29271: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:29272: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:29273: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:29274: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:29275: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:29276: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:29277: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:29354: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:29355: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:29356: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:29357: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:29358: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:29359: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:29360: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:29361: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:29362: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:29363: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:29364: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:29365: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:29396: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:29397: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:29398: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:29399: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:29400: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:29401: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:29402: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:29403: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:29404: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:29405: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:29406: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:29407: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:29644: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:29645: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:29646: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:29647: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:29648: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:29649: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:29650: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:29651: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:29652: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:29653: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:29654: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:29655: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:30236: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:30237: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:30238: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:30239: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:30240: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:30241: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:30242: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:30243: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:30244: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:30245: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:30246: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:30247: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb:31768: CONECT ==> CONNECT
data/t-coffee-13.41.0.28bdc39+dfsg/example/extract_from_pdb:88: omited ==> omitted
data/t-coffee-13.41.0.28bdc39+dfsg/example/extract_from_pdb:89: fro ==> for, from
data/t-coffee-13.41.0.28bdc39+dfsg/example/extract_from_pdb:145: Environement ==> Environment
data/t-coffee-13.41.0.28bdc39+dfsg/example/extract_from_pdb:146: environement ==> environment
data/t-coffee-13.41.0.28bdc39+dfsg/example/extract_from_pdb:1087: unrealeased ==> unreleased
data/t-coffee-13.41.0.28bdc39+dfsg/example/extract_from_pdb:1089: unrealeased ==> unreleased
data/t-coffee-13.41.0.28bdc39+dfsg/example/extract_from_pdb:1110: unrealeased ==> unreleased
data/t-coffee-13.41.0.28bdc39+dfsg/example/extract_from_pdb:1235: unrealeased ==> unreleased
data/t-coffee-13.41.0.28bdc39+dfsg/example/1D4V3.pdb:10: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1D4V3.pdb:12: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1D4V3.pdb:106: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1D4V3.pdb:107: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1D4V3.pdb:108: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1D4V3.pdb:109: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1D4V3.pdb:110: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1D4V3.pdb:111: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1D4V3.pdb:295: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1D4V3.pdb:296: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1D4V3.pdb:297: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1D4V3.pdb:298: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1D4V3.pdb:299: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1D4V3.pdb:300: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/proteases1_small.html:19: EDE ==> EDGE
data/t-coffee-13.41.0.28bdc39+dfsg/example/proteases1_small.html:19: FPR ==> FOR, FAR, FPS
data/t-coffee-13.41.0.28bdc39+dfsg/example/1EXT1.pdb:11: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1EXT1.pdb:118: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1EXT1.pdb:119: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1EXT1.pdb:120: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1EXT1.pdb:121: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1EXT1.pdb:122: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1EXT1.pdb:123: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1OP8F.pdb:10: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1OP8F.pdb:11: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1OP8F.pdb:13: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1OP8F.pdb:14: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1OP8F.pdb:20: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1OP8F.pdb:20: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1OP8F.pdb:20: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1OP8F.pdb:22: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1OP8F.pdb:23: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1OP8F.pdb:23: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1OP8F.pdb:23: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1OP8F.pdb:24: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1OP8F.pdb:26: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1OP8F.pdb:100: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1OP8F.pdb:101: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1OP8F.pdb:102: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1OP8F.pdb:103: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1OP8F.pdb:104: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1OP8F.pdb:105: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1OP8F.pdb:167: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1OP8F.pdb:168: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1OP8F.pdb:169: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1OP8F.pdb:170: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1OP8F.pdb:171: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1OP8F.pdb:172: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1OP8F.pdb:388: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1OP8F.pdb:389: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1OP8F.pdb:390: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1OP8F.pdb:391: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1OP8F.pdb:392: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1OP8F.pdb:393: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1OP8F.pdb:445: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1OP8F.pdb:446: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1OP8F.pdb:447: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1OP8F.pdb:448: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1OP8F.pdb:449: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1OP8F.pdb:450: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1OP8F.pdb:1045: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1OP8F.pdb:1046: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1OP8F.pdb:1047: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1OP8F.pdb:1048: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1OP8F.pdb:1049: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1OP8F.pdb:1050: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1OP8F.pdb:1056: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1OP8F.pdb:1057: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1OP8F.pdb:1058: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1OP8F.pdb:1059: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1OP8F.pdb:1060: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1OP8F.pdb:1061: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1OP8F.pdb:1076: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1OP8F.pdb:1077: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1OP8F.pdb:1078: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1OP8F.pdb:1079: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1OP8F.pdb:1080: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1OP8F.pdb:1081: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1OP8F.pdb:1330: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1OP8F.pdb:1331: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1OP8F.pdb:1332: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1OP8F.pdb:1333: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1OP8F.pdb:1334: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1OP8F.pdb:1335: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1OP8F.pdb:1367: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1OP8F.pdb:1368: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1OP8F.pdb:1369: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1OP8F.pdb:1370: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1OP8F.pdb:1371: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1OP8F.pdb:1372: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1OP8F.pdb:1399: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1OP8F.pdb:1400: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1OP8F.pdb:1401: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1OP8F.pdb:1402: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1OP8F.pdb:1403: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1OP8F.pdb:1404: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1OP8F.pdb:1409: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1OP8F.pdb:1410: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1OP8F.pdb:1411: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1OP8F.pdb:1412: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1OP8F.pdb:1413: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1OP8F.pdb:1414: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1OP8F.pdb:1504: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1OP8F.pdb:1505: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1OP8F.pdb:1506: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1OP8F.pdb:1507: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1OP8F.pdb:1508: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1OP8F.pdb:1509: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1OP8F.pdb:1634: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1OP8F.pdb:1635: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1OP8F.pdb:1636: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1OP8F.pdb:1637: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1OP8F.pdb:1638: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1OP8F.pdb:1639: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/sample_3Dseq2.html:19: TE ==> THE, BE, WE
data/t-coffee-13.41.0.28bdc39+dfsg/example/proteases_small.b62_aln.html:19: TE ==> THE, BE, WE
data/t-coffee-13.41.0.28bdc39+dfsg/example/proteases_small.b62_aln.html:19: ALS ==> ALSO
data/t-coffee-13.41.0.28bdc39+dfsg/example/proteases_small.b62_aln.html:19: ND ==> AND, 2ND
data/t-coffee-13.41.0.28bdc39+dfsg/example/proteases_small.b62_aln.html:19: VAS ==> WAS
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc1.pdb:10: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc1.pdb:11: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc1.pdb:12: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc1.pdb:12: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc1.pdb:13: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc1.pdb:13: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc1.pdb:14: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc1.pdb:14: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc1.pdb:15: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc1.pdb:16: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc1.pdb:17: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc1.pdb:18: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc1.pdb:19: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc1.pdb:20: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc1.pdb:20: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc1.pdb:21: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc1.pdb:22: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc1.pdb:23: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc1.pdb:23: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc1.pdb:25: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc1.pdb:25: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc1.pdb:26: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc1.pdb:27: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc1.pdb:27: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc1.pdb:29: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc1.pdb:30: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc1.pdb:31: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc1.pdb:31: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc1.pdb:32: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc1.pdb:32: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc1.pdb:33: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc1.pdb:60: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc1.pdb:61: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc1.pdb:62: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc1.pdb:63: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc1.pdb:64: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc1.pdb:65: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc1.pdb:131: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc1.pdb:132: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc1.pdb:133: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc1.pdb:134: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc1.pdb:135: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc1.pdb:136: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc1.pdb:316: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc1.pdb:317: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc1.pdb:318: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc1.pdb:319: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc1.pdb:320: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc1.pdb:321: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc1.pdb:322: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc1.pdb:323: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc1.pdb:324: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc1.pdb:325: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc1.pdb:326: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc1.pdb:327: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc1.pdb:375: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc1.pdb:376: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc1.pdb:377: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc1.pdb:378: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc1.pdb:379: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc1.pdb:380: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc1.pdb:416: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc1.pdb:417: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc1.pdb:418: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc1.pdb:419: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc1.pdb:420: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc1.pdb:421: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc1.pdb:534: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc1.pdb:535: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc1.pdb:536: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc1.pdb:537: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc1.pdb:538: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc1.pdb:539: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc1.pdb:540: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc1.pdb:541: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc1.pdb:542: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc1.pdb:543: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc1.pdb:544: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc1.pdb:545: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc1.pdb:617: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc1.pdb:618: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc1.pdb:619: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc1.pdb:620: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc1.pdb:621: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc1.pdb:622: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc1.pdb:668: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc1.pdb:669: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc1.pdb:670: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc1.pdb:671: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc1.pdb:672: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc1.pdb:673: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc1.pdb:763: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc1.pdb:764: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc1.pdb:765: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc1.pdb:766: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc1.pdb:767: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc1.pdb:768: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc1.pdb:852: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc1.pdb:853: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc1.pdb:854: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc1.pdb:855: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc1.pdb:856: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc1.pdb:857: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc1.pdb:1028: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc1.pdb:1029: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc1.pdb:1030: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc1.pdb:1031: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc1.pdb:1032: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc1.pdb:1033: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc1.pdb:1047: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc1.pdb:1048: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc1.pdb:1049: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc1.pdb:1050: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc1.pdb:1051: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc1.pdb:1052: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc1.pdb:1074: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc1.pdb:1075: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc1.pdb:1076: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc1.pdb:1077: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc1.pdb:1078: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc1.pdb:1079: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc1.pdb:1230: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc1.pdb:1231: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc1.pdb:1232: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc1.pdb:1233: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc1.pdb:1234: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc1.pdb:1235: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc1.pdb:1312: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc1.pdb:1313: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc1.pdb:1314: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc1.pdb:1315: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc1.pdb:1316: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc1.pdb:1317: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc1.pdb:1381: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc1.pdb:1382: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc1.pdb:1383: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc1.pdb:1384: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc1.pdb:1385: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc1.pdb:1386: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc1.pdb:1422: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc1.pdb:1423: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc1.pdb:1424: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc1.pdb:1425: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc1.pdb:1426: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc1.pdb:1427: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc1.pdb:1581: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc1.pdb:1582: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc1.pdb:1583: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc1.pdb:1584: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc1.pdb:1585: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc1.pdb:1586: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc1.pdb:1609: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc1.pdb:1610: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc1.pdb:1611: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc1.pdb:1612: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc1.pdb:1613: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc1.pdb:1614: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc1.pdb:1730: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc1.pdb:1731: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc1.pdb:1732: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc1.pdb:1733: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc1.pdb:1734: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc1.pdb:1735: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc1.pdb:1771: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc1.pdb:1772: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc1.pdb:1773: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc1.pdb:1774: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc1.pdb:1775: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc1.pdb:1776: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc1.pdb:1777: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc1.pdb:1778: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc1.pdb:1779: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc1.pdb:1780: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc1.pdb:1781: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc1.pdb:1782: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc1.pdb:1986: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc1.pdb:1987: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc1.pdb:1988: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc1.pdb:1989: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc1.pdb:1990: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc1.pdb:1991: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc1.pdb:2138: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc1.pdb:2139: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc1.pdb:2140: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc1.pdb:2141: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc1.pdb:2142: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc1.pdb:2143: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc1.pdb:2168: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc1.pdb:2169: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc1.pdb:2170: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc1.pdb:2171: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc1.pdb:2172: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc1.pdb:2173: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc1.pdb:2228: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc1.pdb:2229: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc1.pdb:2230: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc1.pdb:2231: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc1.pdb:2232: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc1.pdb:2233: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc1.pdb:2258: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc1.pdb:2259: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc1.pdb:2260: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc1.pdb:2261: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc1.pdb:2262: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc1.pdb:2263: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc1.pdb:2291: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc1.pdb:2292: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc1.pdb:2293: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc1.pdb:2294: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc1.pdb:2295: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc1.pdb:2296: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc1.pdb:2427: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc1.pdb:2428: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc1.pdb:2429: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc1.pdb:2430: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc1.pdb:2431: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc1.pdb:2432: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/msa2bootstrap.pl:266: nD ==> and, 2nd
data/t-coffee-13.41.0.28bdc39+dfsg/example/msa2bootstrap.pl:279: nD ==> and, 2nd
data/t-coffee-13.41.0.28bdc39+dfsg/example/msa2bootstrap.pl:341: nD ==> and, 2nd
data/t-coffee-13.41.0.28bdc39+dfsg/example/msa2bootstrap.pl:350: nD ==> and, 2nd
data/t-coffee-13.41.0.28bdc39+dfsg/example/msa2bootstrap.pl:374: nD ==> and, 2nd
data/t-coffee-13.41.0.28bdc39+dfsg/example/sv.html:19: TE ==> THE, BE, WE
data/t-coffee-13.41.0.28bdc39+dfsg/example/out.html:19: TE ==> THE, BE, WE
data/t-coffee-13.41.0.28bdc39+dfsg/example/1NN6.pdb:10: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1NN6.pdb:11: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1NN6.pdb:11: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1NN6.pdb:13: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1NN6.pdb:16: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1NN6.pdb:17: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1NN6.pdb:18: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1NN6.pdb:20: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1NN6.pdb:21: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1NN6.pdb:23: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1NN6.pdb:24: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1NN6.pdb:25: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1NN6.pdb:26: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1NN6.pdb:80: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1NN6.pdb:81: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1NN6.pdb:82: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1NN6.pdb:83: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1NN6.pdb:84: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1NN6.pdb:85: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1NN6.pdb:180: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1NN6.pdb:181: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1NN6.pdb:182: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1NN6.pdb:183: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1NN6.pdb:184: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1NN6.pdb:185: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1NN6.pdb:205: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1NN6.pdb:206: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1NN6.pdb:207: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1NN6.pdb:208: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1NN6.pdb:209: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1NN6.pdb:210: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1NN6.pdb:380: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1NN6.pdb:381: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1NN6.pdb:382: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1NN6.pdb:383: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1NN6.pdb:384: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1NN6.pdb:385: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1NN6.pdb:662: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1NN6.pdb:663: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1NN6.pdb:664: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1NN6.pdb:665: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1NN6.pdb:666: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1NN6.pdb:667: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1NN6.pdb:792: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1NN6.pdb:793: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1NN6.pdb:794: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1NN6.pdb:795: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1NN6.pdb:796: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1NN6.pdb:797: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1NN6.pdb:877: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1NN6.pdb:878: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1NN6.pdb:879: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1NN6.pdb:880: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1NN6.pdb:881: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1NN6.pdb:882: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1NN6.pdb:1060: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1NN6.pdb:1061: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1NN6.pdb:1062: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1NN6.pdb:1063: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1NN6.pdb:1064: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1NN6.pdb:1065: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1NN6.pdb:1190: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1NN6.pdb:1191: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1NN6.pdb:1192: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1NN6.pdb:1193: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1NN6.pdb:1194: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1NN6.pdb:1195: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1NN6.pdb:1382: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1NN6.pdb:1383: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1NN6.pdb:1384: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1NN6.pdb:1385: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1NN6.pdb:1386: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1NN6.pdb:1387: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1NN6.pdb:1474: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1NN6.pdb:1475: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1NN6.pdb:1476: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1NN6.pdb:1477: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1NN6.pdb:1478: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1NN6.pdb:1479: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1NN6.pdb:1507: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1NN6.pdb:1508: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1NN6.pdb:1509: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1NN6.pdb:1510: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1NN6.pdb:1511: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1NN6.pdb:1512: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1NN6.pdb:1595: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1NN6.pdb:1596: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1NN6.pdb:1597: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1NN6.pdb:1598: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1NN6.pdb:1599: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1NN6.pdb:1600: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/b80.aln.html:19: TE ==> THE, BE, WE
data/t-coffee-13.41.0.28bdc39+dfsg/example/b80.aln.html:19: TE ==> THE, BE, WE
data/t-coffee-13.41.0.28bdc39+dfsg/example/3IJ21.pdb:10: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3IJ21.pdb:10: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3IJ21.pdb:26: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3IJ21.pdb:27: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3IJ21.pdb:28: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3IJ21.pdb:29: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3IJ21.pdb:30: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3IJ21.pdb:31: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3IJ21.pdb:80: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3IJ21.pdb:81: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3IJ21.pdb:82: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3IJ21.pdb:83: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3IJ21.pdb:84: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3IJ21.pdb:85: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1FI8.pdb:10: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1FI8.pdb:11: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1FI8.pdb:13: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1FI8.pdb:13: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1FI8.pdb:15: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1FI8.pdb:16: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1FI8.pdb:17: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1FI8.pdb:17: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1FI8.pdb:17: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1FI8.pdb:20: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1FI8.pdb:21: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1FI8.pdb:23: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1FI8.pdb:23: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1FI8.pdb:24: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1FI8.pdb:25: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1FI8.pdb:25: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1FI8.pdb:26: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1FI8.pdb:101: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1FI8.pdb:102: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1FI8.pdb:103: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1FI8.pdb:104: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1FI8.pdb:105: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1FI8.pdb:106: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1FI8.pdb:200: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1FI8.pdb:201: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1FI8.pdb:202: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1FI8.pdb:203: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1FI8.pdb:204: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1FI8.pdb:205: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1FI8.pdb:348: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1FI8.pdb:349: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1FI8.pdb:350: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1FI8.pdb:351: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1FI8.pdb:352: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1FI8.pdb:353: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1FI8.pdb:358: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1FI8.pdb:359: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1FI8.pdb:360: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1FI8.pdb:361: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1FI8.pdb:362: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1FI8.pdb:363: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1FI8.pdb:618: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1FI8.pdb:619: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1FI8.pdb:620: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1FI8.pdb:621: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1FI8.pdb:622: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1FI8.pdb:623: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1FI8.pdb:644: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1FI8.pdb:645: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1FI8.pdb:646: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1FI8.pdb:647: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1FI8.pdb:648: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1FI8.pdb:649: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1FI8.pdb:724: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1FI8.pdb:725: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1FI8.pdb:726: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1FI8.pdb:727: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1FI8.pdb:728: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1FI8.pdb:729: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1FI8.pdb:754: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1FI8.pdb:755: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1FI8.pdb:756: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1FI8.pdb:757: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1FI8.pdb:758: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1FI8.pdb:759: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1FI8.pdb:760: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1FI8.pdb:761: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1FI8.pdb:762: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1FI8.pdb:763: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1FI8.pdb:764: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1FI8.pdb:765: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1FI8.pdb:1005: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1FI8.pdb:1006: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1FI8.pdb:1007: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1FI8.pdb:1008: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1FI8.pdb:1009: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1FI8.pdb:1010: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1FI8.pdb:1149: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1FI8.pdb:1150: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1FI8.pdb:1151: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1FI8.pdb:1152: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1FI8.pdb:1153: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1FI8.pdb:1154: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1FI8.pdb:1301: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1FI8.pdb:1302: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1FI8.pdb:1303: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1FI8.pdb:1304: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1FI8.pdb:1305: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1FI8.pdb:1306: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1FI8.pdb:1341: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1FI8.pdb:1342: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1FI8.pdb:1343: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1FI8.pdb:1344: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1FI8.pdb:1345: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1FI8.pdb:1346: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1FI8.pdb:1433: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1FI8.pdb:1434: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1FI8.pdb:1435: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1FI8.pdb:1436: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1FI8.pdb:1437: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1FI8.pdb:1438: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1FI8.pdb:1484: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1FI8.pdb:1485: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1FI8.pdb:1486: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1FI8.pdb:1487: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1FI8.pdb:1488: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1FI8.pdb:1489: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1FI8.pdb:1554: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1FI8.pdb:1555: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1FI8.pdb:1556: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1FI8.pdb:1557: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1FI8.pdb:1558: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1FI8.pdb:1559: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1FI8.pdb:1586: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1FI8.pdb:1587: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1FI8.pdb:1588: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1FI8.pdb:1589: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1FI8.pdb:1590: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1FI8.pdb:1591: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/install.pl:62: expresso ==> espresso
data/t-coffee-13.41.0.28bdc39+dfsg/example/install.pl:133: enviroment ==> environment
data/t-coffee-13.41.0.28bdc39+dfsg/example/install.pl:134: enviroment ==> environment
data/t-coffee-13.41.0.28bdc39+dfsg/example/install.pl:321: succesful ==> successful
data/t-coffee-13.41.0.28bdc39+dfsg/example/install.pl:326: succesful ==> successful
data/t-coffee-13.41.0.28bdc39+dfsg/example/install.pl:330: succesful ==> successful
data/t-coffee-13.41.0.28bdc39+dfsg/example/install.pl:532: unsuccesful ==> unsuccessful
data/t-coffee-13.41.0.28bdc39+dfsg/example/install.pl:536: succesful ==> successful
data/t-coffee-13.41.0.28bdc39+dfsg/example/install.pl:541: sytem ==> system
data/t-coffee-13.41.0.28bdc39+dfsg/example/install.pl:861: mantained ==> maintained
data/t-coffee-13.41.0.28bdc39+dfsg/example/install.pl:1480: expresso ==> espresso
data/t-coffee-13.41.0.28bdc39+dfsg/example/install.pl:1495: expresso ==> espresso
data/t-coffee-13.41.0.28bdc39+dfsg/example/install.pl:1635: expresso ==> espresso
data/t-coffee-13.41.0.28bdc39+dfsg/example/install.pl:1644: expresso ==> espresso
data/t-coffee-13.41.0.28bdc39+dfsg/example/install.pl:1652: expresso ==> espresso
data/t-coffee-13.41.0.28bdc39+dfsg/example/install.pl:1661: expresso ==> espresso
data/t-coffee-13.41.0.28bdc39+dfsg/example/install.pl:1669: expresso ==> espresso
data/t-coffee-13.41.0.28bdc39+dfsg/example/install.pl:1677: expresso ==> espresso
data/t-coffee-13.41.0.28bdc39+dfsg/example/install.pl:1686: expresso ==> espresso
data/t-coffee-13.41.0.28bdc39+dfsg/example/install.pl:1745: expresso ==> espresso
data/t-coffee-13.41.0.28bdc39+dfsg/example/install.pl:1754: expresso ==> espresso
data/t-coffee-13.41.0.28bdc39+dfsg/example/install.pl:1762: expresso ==> espresso
data/t-coffee-13.41.0.28bdc39+dfsg/example/install.pl:1770: expresso ==> espresso
data/t-coffee-13.41.0.28bdc39+dfsg/example/install.pl:1785: expresso ==> espresso
data/t-coffee-13.41.0.28bdc39+dfsg/example/install.pl:1790: expresso ==> espresso
data/t-coffee-13.41.0.28bdc39+dfsg/example/install.pl:1790: expresso ==> espresso
data/t-coffee-13.41.0.28bdc39+dfsg/example/install.pl:1837: expresso ==> espresso
data/t-coffee-13.41.0.28bdc39+dfsg/example/three_pdb_two_seq.html:19: ND ==> AND, 2ND
data/t-coffee-13.41.0.28bdc39+dfsg/example/3G01B.pdb:10: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3G01B.pdb:10: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3G01B.pdb:13: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3G01B.pdb:16: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3G01B.pdb:21: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3G01B.pdb:21: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3G01B.pdb:21: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3G01B.pdb:22: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3G01B.pdb:24: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3G01B.pdb:24: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3G01B.pdb:25: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3G01B.pdb:25: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3G01B.pdb:69: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3G01B.pdb:70: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3G01B.pdb:71: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3G01B.pdb:72: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3G01B.pdb:73: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3G01B.pdb:74: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3G01B.pdb:92: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3G01B.pdb:93: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3G01B.pdb:94: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3G01B.pdb:95: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3G01B.pdb:96: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3G01B.pdb:97: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3G01B.pdb:387: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3G01B.pdb:388: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3G01B.pdb:389: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3G01B.pdb:390: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3G01B.pdb:391: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3G01B.pdb:659: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3G01B.pdb:660: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3G01B.pdb:661: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3G01B.pdb:662: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3G01B.pdb:663: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3G01B.pdb:664: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3G01B.pdb:1117: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3G01B.pdb:1118: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3G01B.pdb:1119: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3G01B.pdb:1120: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3G01B.pdb:1121: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3G01B.pdb:1122: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3G01B.pdb:1148: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3G01B.pdb:1149: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3G01B.pdb:1150: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3G01B.pdb:1151: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3G01B.pdb:1152: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3G01B.pdb:1153: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3G01B.pdb:1154: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3G01B.pdb:1155: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3G01B.pdb:1156: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3G01B.pdb:1157: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3G01B.pdb:1158: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3G01B.pdb:1159: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3G01B.pdb:1252: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3G01B.pdb:1253: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3G01B.pdb:1254: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3G01B.pdb:1255: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3G01B.pdb:1256: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3G01B.pdb:1257: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3G01B.pdb:1342: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3G01B.pdb:1343: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3G01B.pdb:1344: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3G01B.pdb:1345: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3G01B.pdb:1346: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3G01B.pdb:1347: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3G01B.pdb:1377: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3G01B.pdb:1378: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3G01B.pdb:1379: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3G01B.pdb:1380: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3G01B.pdb:1381: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3G01B.pdb:1454: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3G01B.pdb:1455: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3G01B.pdb:1456: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3G01B.pdb:1457: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3G01B.pdb:1458: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3G01B.pdb:1459: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3G01B.pdb:1478: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3G01B.pdb:1479: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3G01B.pdb:1480: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3G01B.pdb:1481: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3G01B.pdb:1482: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3G01B.pdb:1483: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/outaln.html:19: WIL ==> WILL, WELL
data/t-coffee-13.41.0.28bdc39+dfsg/example/outaln.html:19: wee ==> we
data/t-coffee-13.41.0.28bdc39+dfsg/example/5ABWA.pdb:11: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/5ABWA.pdb:12: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/5ABWA.pdb:14: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/5ABWA.pdb:17: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/5ABWA.pdb:20: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/5ABWA.pdb:21: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/5ABWA.pdb:21: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/5ABWA.pdb:22: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/5ABWA.pdb:22: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/5ABWA.pdb:23: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/5ABWA.pdb:24: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/5ABWA.pdb:25: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/5ABWA.pdb:157: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/5ABWA.pdb:158: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/5ABWA.pdb:159: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/5ABWA.pdb:160: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/5ABWA.pdb:161: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/5ABWA.pdb:162: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/5ABWA.pdb:312: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/5ABWA.pdb:313: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/5ABWA.pdb:314: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/5ABWA.pdb:315: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/5ABWA.pdb:316: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/5ABWA.pdb:317: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/5ABWA.pdb:454: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/5ABWA.pdb:455: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/5ABWA.pdb:456: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/5ABWA.pdb:457: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/5ABWA.pdb:458: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/5ABWA.pdb:459: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/5ABWA.pdb:749: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/5ABWA.pdb:750: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/5ABWA.pdb:751: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/5ABWA.pdb:752: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/5ABWA.pdb:753: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/5ABWA.pdb:754: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/5ABWA.pdb:1014: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/5ABWA.pdb:1015: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/5ABWA.pdb:1016: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/5ABWA.pdb:1017: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/5ABWA.pdb:1018: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/5ABWA.pdb:1019: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/5ABWA.pdb:1104: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/5ABWA.pdb:1105: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/5ABWA.pdb:1106: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/5ABWA.pdb:1107: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/5ABWA.pdb:1108: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/5ABWA.pdb:1109: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/5ABWA.pdb:1146: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/5ABWA.pdb:1147: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/5ABWA.pdb:1148: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/5ABWA.pdb:1149: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/5ABWA.pdb:1150: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/5ABWA.pdb:1151: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/5ABWA.pdb:1260: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/5ABWA.pdb:1261: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/5ABWA.pdb:1262: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/5ABWA.pdb:1263: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/5ABWA.pdb:1264: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/5ABWA.pdb:1265: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/5ABWA.pdb:1270: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/5ABWA.pdb:1271: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/5ABWA.pdb:1272: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/5ABWA.pdb:1273: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/5ABWA.pdb:1274: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/5ABWA.pdb:1275: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/5ABWA.pdb:1359: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/5ABWA.pdb:1360: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/5ABWA.pdb:1361: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/5ABWA.pdb:1362: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/5ABWA.pdb:1363: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/5ABWA.pdb:1364: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/5ABWA.pdb:1408: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/5ABWA.pdb:1409: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/5ABWA.pdb:1410: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/5ABWA.pdb:1411: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/5ABWA.pdb:1412: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/5ABWA.pdb:1413: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/5ABWA.pdb:1558: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/5ABWA.pdb:1559: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/5ABWA.pdb:1560: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/5ABWA.pdb:1561: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/5ABWA.pdb:1562: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/5ABWA.pdb:1563: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2HEY1.pdb:10: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2HEY1.pdb:11: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2HEY1.pdb:12: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2HEY1.pdb:12: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2HEY1.pdb:74: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2HEY1.pdb:75: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2HEY1.pdb:76: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2HEY1.pdb:77: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2HEY1.pdb:78: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2HEY1.pdb:79: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2HEY1.pdb:193: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2HEY1.pdb:194: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2HEY1.pdb:195: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2HEY1.pdb:196: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2HEY1.pdb:197: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2HEY1.pdb:198: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2HEY1.pdb:216: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2HEY1.pdb:217: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2HEY1.pdb:218: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2HEY1.pdb:219: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2HEY1.pdb:220: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2HEY1.pdb:221: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2HEY1.pdb:233: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2HEY1.pdb:234: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2HEY1.pdb:235: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2HEY1.pdb:236: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2HEY1.pdb:237: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2HEY1.pdb:238: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1JMA1.pdb:10: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1JMA1.pdb:11: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1JMA1.pdb:84: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1JMA1.pdb:85: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1JMA1.pdb:86: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1JMA1.pdb:87: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1JMA1.pdb:88: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1JMA1.pdb:89: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1JMA1.pdb:133: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1JMA1.pdb:134: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1JMA1.pdb:135: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1JMA1.pdb:136: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1JMA1.pdb:137: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1JMA1.pdb:138: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/clustal_text.html:19: te ==> the, be, we
data/t-coffee-13.41.0.28bdc39+dfsg/example/2HEYR.pdb:10: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2HEYR.pdb:11: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2HEYR.pdb:12: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2HEYR.pdb:12: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2HEYR.pdb:74: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2HEYR.pdb:75: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2HEYR.pdb:76: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2HEYR.pdb:77: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2HEYR.pdb:78: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2HEYR.pdb:79: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2HEYR.pdb:193: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2HEYR.pdb:194: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2HEYR.pdb:195: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2HEYR.pdb:196: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2HEYR.pdb:197: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2HEYR.pdb:198: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2HEYR.pdb:216: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2HEYR.pdb:217: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2HEYR.pdb:218: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2HEYR.pdb:219: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2HEYR.pdb:220: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2HEYR.pdb:221: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2HEYR.pdb:233: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2HEYR.pdb:234: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2HEYR.pdb:235: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2HEYR.pdb:236: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2HEYR.pdb:237: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2HEYR.pdb:238: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1EXT3.pdb:10: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1EXT3.pdb:11: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1EXT3.pdb:12: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1EXT3.pdb:120: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1EXT3.pdb:121: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1EXT3.pdb:122: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1EXT3.pdb:123: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1EXT3.pdb:124: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1EXT3.pdb:125: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1EXT3.pdb:202: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1EXT3.pdb:203: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1EXT3.pdb:204: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1EXT3.pdb:205: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1EXT3.pdb:206: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1EXT3.pdb:207: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1EXT3.pdb:274: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1EXT3.pdb:275: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1EXT3.pdb:276: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1EXT3.pdb:277: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1EXT3.pdb:278: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1EXT3.pdb:279: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/RNAplfold2tclib.pl:188: charaters ==> characters
data/t-coffee-13.41.0.28bdc39+dfsg/example/RNAplfold2tclib.pl:265: non-existant ==> non-existent
data/t-coffee-13.41.0.28bdc39+dfsg/example/2HEY2.pdb:10: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2HEY2.pdb:10: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2HEY2.pdb:11: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2HEY2.pdb:12: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2HEY2.pdb:95: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2HEY2.pdb:96: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2HEY2.pdb:97: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2HEY2.pdb:98: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2HEY2.pdb:99: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2HEY2.pdb:100: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2HEY2.pdb:101: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2HEY2.pdb:102: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2HEY2.pdb:103: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2HEY2.pdb:104: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2HEY2.pdb:105: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2HEY2.pdb:106: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2HEY2.pdb:205: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2HEY2.pdb:206: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2HEY2.pdb:207: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2HEY2.pdb:208: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2HEY2.pdb:209: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2HEY2.pdb:210: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2HEY2.pdb:215: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2HEY2.pdb:216: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2HEY2.pdb:217: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2HEY2.pdb:218: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2HEY2.pdb:219: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2HEY2.pdb:220: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/fasta_seq2hmmtop_fasta.pl:374: struc ==> struct
data/t-coffee-13.41.0.28bdc39+dfsg/example/fasta_seq2hmmtop_fasta.pl:381: struc ==> struct
data/t-coffee-13.41.0.28bdc39+dfsg/example/fasta_seq2hmmtop_fasta.pl:404: struc ==> struct
data/t-coffee-13.41.0.28bdc39+dfsg/example/3IJ2X.pdb:10: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3IJ2X.pdb:10: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3IJ2X.pdb:26: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3IJ2X.pdb:27: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3IJ2X.pdb:28: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3IJ2X.pdb:29: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3IJ2X.pdb:30: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3IJ2X.pdb:31: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3IJ2X.pdb:80: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3IJ2X.pdb:81: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3IJ2X.pdb:82: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3IJ2X.pdb:83: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3IJ2X.pdb:84: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3IJ2X.pdb:85: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/make_license.pl:38: unkown ==> unknown
data/t-coffee-13.41.0.28bdc39+dfsg/example/3ALQ2.pdb:10: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3ALQ2.pdb:10: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3ALQ2.pdb:11: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3ALQ2.pdb:11: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3ALQ2.pdb:11: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3ALQ2.pdb:11: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3ALQ2.pdb:14: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3ALQ2.pdb:15: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3ALQ2.pdb:16: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3ALQ2.pdb:17: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3ALQ2.pdb:18: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3ALQ2.pdb:19: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3ALQ2.pdb:43: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3ALQ2.pdb:44: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3ALQ2.pdb:45: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3ALQ2.pdb:46: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3ALQ2.pdb:47: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3ALQ2.pdb:48: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3ALQ2.pdb:165: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3ALQ2.pdb:166: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3ALQ2.pdb:167: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3ALQ2.pdb:168: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3ALQ2.pdb:169: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3ALQ2.pdb:170: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3ALQ2.pdb:181: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3ALQ2.pdb:182: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3ALQ2.pdb:183: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3ALQ2.pdb:184: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3ALQ2.pdb:185: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3ALQ2.pdb:186: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3ALQ2.pdb:204: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3ALQ2.pdb:205: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3ALQ2.pdb:206: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3ALQ2.pdb:207: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3ALQ2.pdb:208: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3ALQ2.pdb:209: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3ALQ2.pdb:210: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3ALQ2.pdb:211: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3ALQ2.pdb:212: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3ALQ2.pdb:213: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3ALQ2.pdb:214: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3ALQ2.pdb:215: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1JMA2.pdb:11: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1JMA2.pdb:12: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1JMA2.pdb:12: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1JMA2.pdb:115: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1JMA2.pdb:116: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1JMA2.pdb:117: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1JMA2.pdb:118: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1JMA2.pdb:119: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1JMA2.pdb:120: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1JMA2.pdb:238: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1JMA2.pdb:239: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1JMA2.pdb:240: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1JMA2.pdb:241: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1JMA2.pdb:242: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1JMA2.pdb:243: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1JMA2.pdb:269: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1JMA2.pdb:270: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1JMA2.pdb:271: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1JMA2.pdb:272: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1JMA2.pdb:273: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1JMA2.pdb:274: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1MZDA.pdb:10: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1MZDA.pdb:10: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1MZDA.pdb:11: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1MZDA.pdb:13: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1MZDA.pdb:14: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1MZDA.pdb:14: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1MZDA.pdb:14: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1MZDA.pdb:15: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1MZDA.pdb:16: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1MZDA.pdb:16: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1MZDA.pdb:18: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1MZDA.pdb:18: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1MZDA.pdb:18: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1MZDA.pdb:20: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1MZDA.pdb:20: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1MZDA.pdb:21: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1MZDA.pdb:21: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1MZDA.pdb:23: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1MZDA.pdb:24: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1MZDA.pdb:26: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1MZDA.pdb:94: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1MZDA.pdb:95: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1MZDA.pdb:96: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1MZDA.pdb:97: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1MZDA.pdb:98: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1MZDA.pdb:99: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1MZDA.pdb:117: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1MZDA.pdb:118: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1MZDA.pdb:119: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1MZDA.pdb:120: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1MZDA.pdb:121: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1MZDA.pdb:122: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1MZDA.pdb:165: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1MZDA.pdb:166: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1MZDA.pdb:167: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1MZDA.pdb:168: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1MZDA.pdb:169: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1MZDA.pdb:170: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1MZDA.pdb:392: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1MZDA.pdb:393: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1MZDA.pdb:394: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1MZDA.pdb:395: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1MZDA.pdb:396: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1MZDA.pdb:397: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1MZDA.pdb:453: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1MZDA.pdb:454: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1MZDA.pdb:455: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1MZDA.pdb:456: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1MZDA.pdb:457: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1MZDA.pdb:458: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1MZDA.pdb:467: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1MZDA.pdb:468: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1MZDA.pdb:469: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1MZDA.pdb:470: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1MZDA.pdb:471: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1MZDA.pdb:472: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1MZDA.pdb:504: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1MZDA.pdb:505: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1MZDA.pdb:506: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1MZDA.pdb:507: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1MZDA.pdb:508: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1MZDA.pdb:509: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1MZDA.pdb:615: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1MZDA.pdb:616: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1MZDA.pdb:617: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1MZDA.pdb:618: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1MZDA.pdb:619: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1MZDA.pdb:620: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1MZDA.pdb:646: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1MZDA.pdb:647: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1MZDA.pdb:648: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1MZDA.pdb:649: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1MZDA.pdb:650: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1MZDA.pdb:651: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1MZDA.pdb:676: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1MZDA.pdb:677: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1MZDA.pdb:678: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1MZDA.pdb:679: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1MZDA.pdb:680: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1MZDA.pdb:681: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1MZDA.pdb:877: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1MZDA.pdb:878: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1MZDA.pdb:879: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1MZDA.pdb:880: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1MZDA.pdb:881: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1MZDA.pdb:882: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1MZDA.pdb:899: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1MZDA.pdb:900: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1MZDA.pdb:901: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1MZDA.pdb:902: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1MZDA.pdb:903: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1MZDA.pdb:904: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1MZDA.pdb:924: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1MZDA.pdb:925: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1MZDA.pdb:926: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1MZDA.pdb:927: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1MZDA.pdb:928: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1MZDA.pdb:929: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1MZDA.pdb:1036: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1MZDA.pdb:1037: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1MZDA.pdb:1038: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1MZDA.pdb:1039: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1MZDA.pdb:1040: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1MZDA.pdb:1041: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1MZDA.pdb:1060: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1MZDA.pdb:1061: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1MZDA.pdb:1062: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1MZDA.pdb:1063: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1MZDA.pdb:1064: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1MZDA.pdb:1065: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1MZDA.pdb:1152: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1MZDA.pdb:1153: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1MZDA.pdb:1154: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1MZDA.pdb:1155: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1MZDA.pdb:1156: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1MZDA.pdb:1157: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1MZDA.pdb:1200: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1MZDA.pdb:1201: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1MZDA.pdb:1202: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1MZDA.pdb:1203: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1MZDA.pdb:1204: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1MZDA.pdb:1205: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1MZDA.pdb:1352: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1MZDA.pdb:1353: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1MZDA.pdb:1354: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1MZDA.pdb:1355: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1MZDA.pdb:1356: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1MZDA.pdb:1357: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1MZDA.pdb:1488: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1MZDA.pdb:1489: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1MZDA.pdb:1490: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1MZDA.pdb:1491: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1MZDA.pdb:1492: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1MZDA.pdb:1493: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1MZDA.pdb:1681: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1MZDA.pdb:1682: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1MZDA.pdb:1683: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1MZDA.pdb:1684: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1MZDA.pdb:1685: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1MZDA.pdb:1686: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/wublast_lwp.pl:104: Compatability ==> Compatibility
data/t-coffee-13.41.0.28bdc39+dfsg/example/wublast_lwp.pl:307: orginal ==> original
data/t-coffee-13.41.0.28bdc39+dfsg/example/wublast_lwp.pl:836: Compatability ==> Compatibility
data/t-coffee-13.41.0.28bdc39+dfsg/example/1D4V2.pdb:10: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1D4V2.pdb:10: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1D4V2.pdb:11: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1D4V2.pdb:12: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1D4V2.pdb:14: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1D4V2.pdb:15: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1D4V2.pdb:16: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1D4V2.pdb:17: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1D4V2.pdb:18: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1D4V2.pdb:19: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1D4V2.pdb:80: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1D4V2.pdb:81: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1D4V2.pdb:82: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1D4V2.pdb:83: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1D4V2.pdb:84: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1D4V2.pdb:85: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1D4V2.pdb:223: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1D4V2.pdb:224: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1D4V2.pdb:225: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1D4V2.pdb:226: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1D4V2.pdb:227: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1D4V2.pdb:228: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1D4V2.pdb:266: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1D4V2.pdb:267: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1D4V2.pdb:268: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1D4V2.pdb:269: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1D4V2.pdb:270: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1D4V2.pdb:271: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/5FCRD.pdb:11: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/5FCRD.pdb:12: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/5FCRD.pdb:13: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/5FCRD.pdb:14: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/5FCRD.pdb:14: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/5FCRD.pdb:15: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/5FCRD.pdb:15: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/5FCRD.pdb:16: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/5FCRD.pdb:17: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/5FCRD.pdb:17: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/5FCRD.pdb:20: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/5FCRD.pdb:22: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/5FCRD.pdb:23: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/5FCRD.pdb:23: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/5FCRD.pdb:24: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/5FCRD.pdb:26: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/5FCRD.pdb:26: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/5FCRD.pdb:142: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/5FCRD.pdb:143: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/5FCRD.pdb:144: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/5FCRD.pdb:145: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/5FCRD.pdb:146: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/5FCRD.pdb:147: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/5FCRD.pdb:299: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/5FCRD.pdb:300: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/5FCRD.pdb:301: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/5FCRD.pdb:302: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/5FCRD.pdb:303: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/5FCRD.pdb:304: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/5FCRD.pdb:359: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/5FCRD.pdb:360: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/5FCRD.pdb:361: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/5FCRD.pdb:362: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/5FCRD.pdb:363: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/5FCRD.pdb:364: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/5FCRD.pdb:423: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/5FCRD.pdb:424: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/5FCRD.pdb:425: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/5FCRD.pdb:426: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/5FCRD.pdb:427: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/5FCRD.pdb:428: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/5FCRD.pdb:437: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/5FCRD.pdb:438: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/5FCRD.pdb:439: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/5FCRD.pdb:440: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/5FCRD.pdb:441: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/5FCRD.pdb:442: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/5FCRD.pdb:553: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/5FCRD.pdb:554: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/5FCRD.pdb:555: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/5FCRD.pdb:556: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/5FCRD.pdb:557: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/5FCRD.pdb:558: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/5FCRD.pdb:601: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/5FCRD.pdb:602: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/5FCRD.pdb:603: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/5FCRD.pdb:604: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/5FCRD.pdb:605: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/5FCRD.pdb:606: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/5FCRD.pdb:633: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/5FCRD.pdb:634: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/5FCRD.pdb:635: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/5FCRD.pdb:636: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/5FCRD.pdb:637: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/5FCRD.pdb:638: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/5FCRD.pdb:724: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/5FCRD.pdb:725: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/5FCRD.pdb:726: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/5FCRD.pdb:727: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/5FCRD.pdb:728: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/5FCRD.pdb:729: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/5FCRD.pdb:752: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/5FCRD.pdb:753: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/5FCRD.pdb:754: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/5FCRD.pdb:755: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/5FCRD.pdb:756: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/5FCRD.pdb:757: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/5FCRD.pdb:1097: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/5FCRD.pdb:1098: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/5FCRD.pdb:1099: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/5FCRD.pdb:1100: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/5FCRD.pdb:1101: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/5FCRD.pdb:1102: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/5FCRD.pdb:1281: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/5FCRD.pdb:1282: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/5FCRD.pdb:1283: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/5FCRD.pdb:1284: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/5FCRD.pdb:1285: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/5FCRD.pdb:1286: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/5FCRD.pdb:1355: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/5FCRD.pdb:1356: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/5FCRD.pdb:1357: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/5FCRD.pdb:1358: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/5FCRD.pdb:1359: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/5FCRD.pdb:1360: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/5FCRD.pdb:1365: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/5FCRD.pdb:1366: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/5FCRD.pdb:1367: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/5FCRD.pdb:1368: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/5FCRD.pdb:1369: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/5FCRD.pdb:1370: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/5FCRD.pdb:1472: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/5FCRD.pdb:1473: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/5FCRD.pdb:1474: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/5FCRD.pdb:1475: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/5FCRD.pdb:1476: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/5FCRD.pdb:1477: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/5FCRD.pdb:1582: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/5FCRD.pdb:1583: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/5FCRD.pdb:1584: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/5FCRD.pdb:1585: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/5FCRD.pdb:1586: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/5FCRD.pdb:1587: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/5FCRD.pdb:1588: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/5FCRD.pdb:1589: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/5FCRD.pdb:1590: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/5FCRD.pdb:1591: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/5FCRD.pdb:1592: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/5FCRD.pdb:1593: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3ALQR.pdb:11: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3ALQR.pdb:11: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3ALQR.pdb:12: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3ALQR.pdb:147: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3ALQR.pdb:148: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3ALQR.pdb:149: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3ALQR.pdb:150: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3ALQR.pdb:151: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3ALQR.pdb:152: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3ALQR.pdb:168: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3ALQR.pdb:169: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3ALQR.pdb:170: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3ALQR.pdb:171: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3ALQR.pdb:172: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3ALQR.pdb:173: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3ALQR.pdb:265: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3ALQR.pdb:266: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3ALQR.pdb:267: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3ALQR.pdb:268: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3ALQR.pdb:269: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3ALQR.pdb:270: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc3.pdb:10: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc3.pdb:12: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc3.pdb:13: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc3.pdb:13: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc3.pdb:13: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc3.pdb:14: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc3.pdb:14: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc3.pdb:15: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc3.pdb:15: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc3.pdb:15: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc3.pdb:16: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc3.pdb:16: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc3.pdb:16: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc3.pdb:16: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc3.pdb:18: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc3.pdb:19: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc3.pdb:19: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc3.pdb:20: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc3.pdb:21: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc3.pdb:21: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc3.pdb:23: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc3.pdb:23: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc3.pdb:23: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc3.pdb:24: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc3.pdb:24: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc3.pdb:25: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc3.pdb:25: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc3.pdb:25: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc3.pdb:26: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc3.pdb:27: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc3.pdb:27: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc3.pdb:27: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc3.pdb:27: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc3.pdb:28: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc3.pdb:29: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc3.pdb:29: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc3.pdb:29: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc3.pdb:30: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc3.pdb:30: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc3.pdb:31: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc3.pdb:31: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc3.pdb:32: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc3.pdb:32: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc3.pdb:32: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc3.pdb:33: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc3.pdb:33: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc3.pdb:45: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc3.pdb:46: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc3.pdb:47: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc3.pdb:48: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc3.pdb:49: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc3.pdb:50: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc3.pdb:282: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc3.pdb:283: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc3.pdb:284: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc3.pdb:285: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc3.pdb:286: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc3.pdb:287: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc3.pdb:341: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc3.pdb:342: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc3.pdb:343: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc3.pdb:344: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc3.pdb:345: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc3.pdb:346: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc3.pdb:383: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc3.pdb:384: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc3.pdb:385: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc3.pdb:386: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc3.pdb:387: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc3.pdb:388: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc3.pdb:407: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc3.pdb:408: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc3.pdb:409: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc3.pdb:410: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc3.pdb:411: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc3.pdb:412: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc3.pdb:427: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc3.pdb:428: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc3.pdb:429: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc3.pdb:430: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc3.pdb:431: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc3.pdb:432: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc3.pdb:467: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc3.pdb:468: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc3.pdb:469: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc3.pdb:470: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc3.pdb:471: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc3.pdb:472: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc3.pdb:515: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc3.pdb:516: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc3.pdb:517: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc3.pdb:518: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc3.pdb:519: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc3.pdb:520: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc3.pdb:558: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc3.pdb:559: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc3.pdb:560: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc3.pdb:561: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc3.pdb:562: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc3.pdb:563: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc3.pdb:572: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc3.pdb:573: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc3.pdb:574: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc3.pdb:575: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc3.pdb:576: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc3.pdb:577: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc3.pdb:606: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc3.pdb:607: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc3.pdb:608: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc3.pdb:609: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc3.pdb:610: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc3.pdb:611: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc3.pdb:612: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc3.pdb:613: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc3.pdb:614: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc3.pdb:615: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc3.pdb:616: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc3.pdb:617: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc3.pdb:623: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc3.pdb:624: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc3.pdb:625: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc3.pdb:626: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc3.pdb:627: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc3.pdb:628: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc3.pdb:674: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc3.pdb:675: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc3.pdb:676: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc3.pdb:677: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc3.pdb:678: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc3.pdb:679: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc3.pdb:808: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc3.pdb:809: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc3.pdb:810: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc3.pdb:811: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc3.pdb:812: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc3.pdb:813: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc3.pdb:944: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc3.pdb:945: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc3.pdb:946: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc3.pdb:947: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc3.pdb:948: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc3.pdb:949: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc3.pdb:950: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc3.pdb:951: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc3.pdb:952: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc3.pdb:953: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc3.pdb:954: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc3.pdb:955: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc3.pdb:1011: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc3.pdb:1012: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc3.pdb:1013: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc3.pdb:1014: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc3.pdb:1015: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc3.pdb:1016: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc3.pdb:1093: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc3.pdb:1094: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc3.pdb:1095: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc3.pdb:1096: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc3.pdb:1097: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc3.pdb:1098: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc3.pdb:1099: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc3.pdb:1100: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc3.pdb:1101: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc3.pdb:1102: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc3.pdb:1103: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc3.pdb:1104: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc3.pdb:1295: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc3.pdb:1296: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc3.pdb:1297: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc3.pdb:1298: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc3.pdb:1299: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc3.pdb:1300: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc3.pdb:1301: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc3.pdb:1302: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc3.pdb:1303: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc3.pdb:1304: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc3.pdb:1305: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc3.pdb:1306: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc3.pdb:1339: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc3.pdb:1340: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc3.pdb:1341: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc3.pdb:1342: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc3.pdb:1343: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc3.pdb:1344: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc3.pdb:1406: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc3.pdb:1407: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc3.pdb:1408: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc3.pdb:1409: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc3.pdb:1410: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc3.pdb:1411: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc3.pdb:1450: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc3.pdb:1451: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc3.pdb:1452: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc3.pdb:1453: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc3.pdb:1454: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc3.pdb:1455: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc3.pdb:1490: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc3.pdb:1491: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc3.pdb:1492: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc3.pdb:1493: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc3.pdb:1494: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc3.pdb:1495: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc3.pdb:1524: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc3.pdb:1525: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc3.pdb:1526: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc3.pdb:1527: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc3.pdb:1528: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc3.pdb:1529: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc3.pdb:1539: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc3.pdb:1540: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc3.pdb:1541: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc3.pdb:1542: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc3.pdb:1543: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc3.pdb:1544: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc3.pdb:1572: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc3.pdb:1573: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc3.pdb:1574: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc3.pdb:1575: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc3.pdb:1576: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc3.pdb:1577: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc3.pdb:1676: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc3.pdb:1677: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc3.pdb:1678: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc3.pdb:1679: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc3.pdb:1680: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc3.pdb:1681: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc3.pdb:1696: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc3.pdb:1697: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc3.pdb:1698: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc3.pdb:1699: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc3.pdb:1700: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc3.pdb:1701: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc3.pdb:1735: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc3.pdb:1736: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc3.pdb:1737: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc3.pdb:1738: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc3.pdb:1739: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc3.pdb:1740: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc3.pdb:1757: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc3.pdb:1758: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc3.pdb:1759: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc3.pdb:1760: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc3.pdb:1761: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc3.pdb:1762: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc3.pdb:1798: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc3.pdb:1799: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc3.pdb:1800: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc3.pdb:1801: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc3.pdb:1802: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc3.pdb:1803: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc3.pdb:1869: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc3.pdb:1870: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc3.pdb:1871: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc3.pdb:1872: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc3.pdb:1873: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc3.pdb:1874: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc3.pdb:1924: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc3.pdb:1925: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc3.pdb:1926: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc3.pdb:1927: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc3.pdb:1928: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc3.pdb:1929: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc3.pdb:1937: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc3.pdb:1938: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc3.pdb:1939: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc3.pdb:1940: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc3.pdb:1941: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc3.pdb:1942: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc3.pdb:1951: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc3.pdb:1952: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc3.pdb:1953: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc3.pdb:1954: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc3.pdb:1955: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc3.pdb:1956: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc3.pdb:2010: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc3.pdb:2011: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc3.pdb:2012: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc3.pdb:2013: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc3.pdb:2014: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc3.pdb:2015: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc3.pdb:2063: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc3.pdb:2064: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc3.pdb:2065: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc3.pdb:2066: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc3.pdb:2067: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc3.pdb:2068: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc3.pdb:2085: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc3.pdb:2086: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc3.pdb:2087: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc3.pdb:2088: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc3.pdb:2089: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc3.pdb:2090: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc3.pdb:2137: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc3.pdb:2138: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc3.pdb:2139: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc3.pdb:2140: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc3.pdb:2141: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc3.pdb:2142: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc3.pdb:2151: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc3.pdb:2152: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc3.pdb:2153: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc3.pdb:2154: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc3.pdb:2155: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc3.pdb:2156: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc3.pdb:2184: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc3.pdb:2185: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc3.pdb:2186: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc3.pdb:2187: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc3.pdb:2188: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc3.pdb:2189: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc3.pdb:2257: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc3.pdb:2258: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc3.pdb:2259: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc3.pdb:2260: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc3.pdb:2261: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc3.pdb:2262: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc3.pdb:2317: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc3.pdb:2318: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc3.pdb:2319: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc3.pdb:2320: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc3.pdb:2321: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/struc3.pdb:2322: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3ALQ4.pdb:10: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3ALQ4.pdb:10: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3ALQ4.pdb:10: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3ALQ4.pdb:12: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3ALQ4.pdb:60: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3ALQ4.pdb:61: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3ALQ4.pdb:62: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3ALQ4.pdb:63: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3ALQ4.pdb:64: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3ALQ4.pdb:65: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3ALQ4.pdb:88: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3ALQ4.pdb:89: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3ALQ4.pdb:90: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3ALQ4.pdb:91: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3ALQ4.pdb:92: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3ALQ4.pdb:93: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3ALQ4.pdb:94: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3ALQ4.pdb:95: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3ALQ4.pdb:96: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3ALQ4.pdb:97: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3ALQ4.pdb:98: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3ALQ4.pdb:99: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3ALQ4.pdb:239: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3ALQ4.pdb:240: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3ALQ4.pdb:241: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3ALQ4.pdb:242: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3ALQ4.pdb:243: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3ALQ4.pdb:244: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3IJ23.pdb:11: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3IJ23.pdb:11: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3IJ23.pdb:12: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3IJ23.pdb:158: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3IJ23.pdb:159: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3IJ23.pdb:160: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3IJ23.pdb:161: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3IJ23.pdb:162: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3IJ23.pdb:163: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3IJ23.pdb:197: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3IJ23.pdb:198: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3IJ23.pdb:199: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3IJ23.pdb:200: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3IJ23.pdb:201: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3IJ23.pdb:202: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3IJ23.pdb:233: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3IJ23.pdb:234: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3IJ23.pdb:235: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3IJ23.pdb:236: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3IJ23.pdb:237: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/3IJ23.pdb:238: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/clean_cache.pl:120: temprary ==> temporary, temporarily
data/t-coffee-13.41.0.28bdc39+dfsg/example/proteases1_small.msf:32: DED ==> DEAD
data/t-coffee-13.41.0.28bdc39+dfsg/example/combined_profiles.aln.html:19: ND ==> AND, 2ND
data/t-coffee-13.41.0.28bdc39+dfsg/example/combined_profiles.aln.html:19: ND ==> AND, 2ND
data/t-coffee-13.41.0.28bdc39+dfsg/example/combined_profiles.aln.html:19: ND ==> AND, 2ND
data/t-coffee-13.41.0.28bdc39+dfsg/example/2RDLB.pdb:11: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2RDLB.pdb:12: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2RDLB.pdb:13: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2RDLB.pdb:18: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2RDLB.pdb:18: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2RDLB.pdb:18: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2RDLB.pdb:20: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2RDLB.pdb:23: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2RDLB.pdb:24: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2RDLB.pdb:25: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2RDLB.pdb:25: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2RDLB.pdb:220: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2RDLB.pdb:221: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2RDLB.pdb:222: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2RDLB.pdb:223: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2RDLB.pdb:224: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2RDLB.pdb:225: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2RDLB.pdb:237: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2RDLB.pdb:238: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2RDLB.pdb:239: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2RDLB.pdb:240: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2RDLB.pdb:241: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2RDLB.pdb:242: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2RDLB.pdb:383: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2RDLB.pdb:384: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2RDLB.pdb:385: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2RDLB.pdb:386: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2RDLB.pdb:387: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2RDLB.pdb:388: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2RDLB.pdb:874: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2RDLB.pdb:875: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2RDLB.pdb:876: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2RDLB.pdb:877: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2RDLB.pdb:878: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2RDLB.pdb:879: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2RDLB.pdb:894: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2RDLB.pdb:895: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2RDLB.pdb:896: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2RDLB.pdb:897: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2RDLB.pdb:898: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2RDLB.pdb:899: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2RDLB.pdb:908: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2RDLB.pdb:909: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2RDLB.pdb:910: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2RDLB.pdb:911: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2RDLB.pdb:912: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2RDLB.pdb:913: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2RDLB.pdb:1073: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2RDLB.pdb:1074: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2RDLB.pdb:1075: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2RDLB.pdb:1076: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2RDLB.pdb:1077: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2RDLB.pdb:1078: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2RDLB.pdb:1417: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2RDLB.pdb:1418: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2RDLB.pdb:1419: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2RDLB.pdb:1420: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2RDLB.pdb:1421: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2RDLB.pdb:1422: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2RDLB.pdb:1508: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2RDLB.pdb:1509: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2RDLB.pdb:1510: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2RDLB.pdb:1511: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2RDLB.pdb:1512: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2RDLB.pdb:1513: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2RDLB.pdb:1581: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2RDLB.pdb:1582: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2RDLB.pdb:1583: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2RDLB.pdb:1584: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2RDLB.pdb:1585: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2RDLB.pdb:1586: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2RDLB.pdb:1631: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2RDLB.pdb:1632: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2RDLB.pdb:1633: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2RDLB.pdb:1634: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2RDLB.pdb:1635: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2RDLB.pdb:1636: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/sample_aln1.html:19: TEY ==> THEY
data/t-coffee-13.41.0.28bdc39+dfsg/example/sample_aln1.html:19: TE ==> THE, BE, WE
data/t-coffee-13.41.0.28bdc39+dfsg/example/sample_aln1.html:19: ND ==> AND, 2ND
data/t-coffee-13.41.0.28bdc39+dfsg/example/sample_aln1.html:19: WIL ==> WILL, WELL
data/t-coffee-13.41.0.28bdc39+dfsg/example/proteases_small.html:19: KAKE ==> CAKE, TAKE
data/t-coffee-13.41.0.28bdc39+dfsg/example/proteases_small.html:19: WLL ==> WILL
data/t-coffee-13.41.0.28bdc39+dfsg/example/proteases_small.html:19: AKS ==> ASK
data/t-coffee-13.41.0.28bdc39+dfsg/example/proteases_small.html:19: ND ==> AND, 2ND
data/t-coffee-13.41.0.28bdc39+dfsg/example/1EXT2.pdb:10: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1EXT2.pdb:10: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1EXT2.pdb:10: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1EXT2.pdb:11: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1EXT2.pdb:11: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1EXT2.pdb:12: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1EXT2.pdb:12: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1EXT2.pdb:38: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1EXT2.pdb:39: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1EXT2.pdb:40: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1EXT2.pdb:41: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1EXT2.pdb:42: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1EXT2.pdb:43: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1EXT2.pdb:48: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1EXT2.pdb:49: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1EXT2.pdb:50: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1EXT2.pdb:51: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1EXT2.pdb:52: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1EXT2.pdb:53: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1EXT2.pdb:77: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1EXT2.pdb:78: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1EXT2.pdb:79: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1EXT2.pdb:80: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1EXT2.pdb:81: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1EXT2.pdb:82: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1EXT2.pdb:153: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1EXT2.pdb:154: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1EXT2.pdb:155: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1EXT2.pdb:156: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1EXT2.pdb:157: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1EXT2.pdb:158: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1EXT2.pdb:165: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1EXT2.pdb:166: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1EXT2.pdb:167: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1EXT2.pdb:168: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1EXT2.pdb:169: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1EXT2.pdb:170: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1EXT2.pdb:260: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1EXT2.pdb:261: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1EXT2.pdb:262: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1EXT2.pdb:263: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1EXT2.pdb:264: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1EXT2.pdb:265: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1EXT2.pdb:266: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1EXT2.pdb:267: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1EXT2.pdb:268: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1EXT2.pdb:269: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1EXT2.pdb:270: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1EXT2.pdb:271: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2QXJA.pdb:10: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2QXJA.pdb:11: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2QXJA.pdb:14: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2QXJA.pdb:15: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2QXJA.pdb:15: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2QXJA.pdb:15: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2QXJA.pdb:16: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2QXJA.pdb:17: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2QXJA.pdb:17: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2QXJA.pdb:18: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2QXJA.pdb:19: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2QXJA.pdb:19: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2QXJA.pdb:20: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2QXJA.pdb:20: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2QXJA.pdb:22: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2QXJA.pdb:23: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2QXJA.pdb:24: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2QXJA.pdb:93: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2QXJA.pdb:94: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2QXJA.pdb:95: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2QXJA.pdb:96: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2QXJA.pdb:97: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2QXJA.pdb:98: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2QXJA.pdb:167: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2QXJA.pdb:168: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2QXJA.pdb:169: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2QXJA.pdb:170: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2QXJA.pdb:171: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2QXJA.pdb:172: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2QXJA.pdb:420: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2QXJA.pdb:421: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2QXJA.pdb:422: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2QXJA.pdb:423: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2QXJA.pdb:424: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2QXJA.pdb:425: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2QXJA.pdb:530: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2QXJA.pdb:531: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2QXJA.pdb:532: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2QXJA.pdb:533: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2QXJA.pdb:534: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2QXJA.pdb:535: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2QXJA.pdb:545: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2QXJA.pdb:546: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2QXJA.pdb:547: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2QXJA.pdb:548: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2QXJA.pdb:549: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2QXJA.pdb:550: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2QXJA.pdb:606: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2QXJA.pdb:607: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2QXJA.pdb:608: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2QXJA.pdb:609: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2QXJA.pdb:610: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2QXJA.pdb:611: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2QXJA.pdb:724: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2QXJA.pdb:725: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2QXJA.pdb:726: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2QXJA.pdb:727: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2QXJA.pdb:728: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2QXJA.pdb:729: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2QXJA.pdb:763: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2QXJA.pdb:764: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2QXJA.pdb:765: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2QXJA.pdb:766: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2QXJA.pdb:767: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2QXJA.pdb:768: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2QXJA.pdb:769: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2QXJA.pdb:770: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2QXJA.pdb:771: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2QXJA.pdb:772: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2QXJA.pdb:773: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2QXJA.pdb:774: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2QXJA.pdb:841: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2QXJA.pdb:842: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2QXJA.pdb:843: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2QXJA.pdb:844: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2QXJA.pdb:845: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2QXJA.pdb:846: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2QXJA.pdb:925: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2QXJA.pdb:926: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2QXJA.pdb:927: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2QXJA.pdb:928: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2QXJA.pdb:929: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2QXJA.pdb:930: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2QXJA.pdb:974: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2QXJA.pdb:975: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2QXJA.pdb:976: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2QXJA.pdb:977: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2QXJA.pdb:978: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2QXJA.pdb:979: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2QXJA.pdb:1027: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2QXJA.pdb:1028: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2QXJA.pdb:1029: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2QXJA.pdb:1030: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2QXJA.pdb:1031: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2QXJA.pdb:1032: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2QXJA.pdb:1110: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2QXJA.pdb:1111: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2QXJA.pdb:1112: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2QXJA.pdb:1113: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2QXJA.pdb:1114: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2QXJA.pdb:1115: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2QXJA.pdb:1231: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2QXJA.pdb:1232: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2QXJA.pdb:1233: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2QXJA.pdb:1234: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2QXJA.pdb:1235: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2QXJA.pdb:1236: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2QXJA.pdb:1340: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2QXJA.pdb:1341: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2QXJA.pdb:1342: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2QXJA.pdb:1343: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2QXJA.pdb:1344: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2QXJA.pdb:1345: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2QXJA.pdb:1440: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2QXJA.pdb:1441: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2QXJA.pdb:1442: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2QXJA.pdb:1443: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2QXJA.pdb:1444: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2QXJA.pdb:1445: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/sample_3Dseq1.aln:1: expresso ==> espresso
data/t-coffee-13.41.0.28bdc39+dfsg/example/prf1.html:19: ND ==> AND, 2ND
data/t-coffee-13.41.0.28bdc39+dfsg/example/prf1.html:19: TE ==> THE, BE, WE
data/t-coffee-13.41.0.28bdc39+dfsg/example/1EUFA.pdb:10: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1EUFA.pdb:11: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1EUFA.pdb:13: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1EUFA.pdb:13: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1EUFA.pdb:17: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1EUFA.pdb:18: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1EUFA.pdb:19: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1EUFA.pdb:20: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1EUFA.pdb:21: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1EUFA.pdb:22: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1EUFA.pdb:23: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1EUFA.pdb:23: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1EUFA.pdb:23: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1EUFA.pdb:24: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1EUFA.pdb:25: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1EUFA.pdb:26: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1EUFA.pdb:26: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1EUFA.pdb:26: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1EUFA.pdb:101: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1EUFA.pdb:102: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1EUFA.pdb:103: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1EUFA.pdb:104: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1EUFA.pdb:105: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1EUFA.pdb:106: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1EUFA.pdb:206: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1EUFA.pdb:207: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1EUFA.pdb:208: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1EUFA.pdb:209: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1EUFA.pdb:210: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1EUFA.pdb:211: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1EUFA.pdb:369: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1EUFA.pdb:370: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1EUFA.pdb:371: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1EUFA.pdb:372: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1EUFA.pdb:373: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1EUFA.pdb:374: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1EUFA.pdb:375: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1EUFA.pdb:376: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1EUFA.pdb:377: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1EUFA.pdb:378: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1EUFA.pdb:379: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1EUFA.pdb:380: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1EUFA.pdb:826: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1EUFA.pdb:827: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1EUFA.pdb:828: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1EUFA.pdb:829: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1EUFA.pdb:830: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1EUFA.pdb:831: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1EUFA.pdb:881: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1EUFA.pdb:882: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1EUFA.pdb:883: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1EUFA.pdb:884: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1EUFA.pdb:885: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1EUFA.pdb:886: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1EUFA.pdb:958: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1EUFA.pdb:959: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1EUFA.pdb:960: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1EUFA.pdb:961: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1EUFA.pdb:962: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1EUFA.pdb:963: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1EUFA.pdb:1051: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1EUFA.pdb:1052: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1EUFA.pdb:1053: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1EUFA.pdb:1054: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1EUFA.pdb:1055: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1EUFA.pdb:1056: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1EUFA.pdb:1155: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1EUFA.pdb:1156: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1EUFA.pdb:1157: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1EUFA.pdb:1158: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1EUFA.pdb:1159: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1EUFA.pdb:1160: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1EUFA.pdb:1323: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1EUFA.pdb:1324: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1EUFA.pdb:1325: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1EUFA.pdb:1326: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1EUFA.pdb:1327: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1EUFA.pdb:1328: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1EUFA.pdb:1366: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1EUFA.pdb:1367: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1EUFA.pdb:1368: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1EUFA.pdb:1369: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1EUFA.pdb:1370: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1EUFA.pdb:1371: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1EUFA.pdb:1383: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1EUFA.pdb:1384: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1EUFA.pdb:1385: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1EUFA.pdb:1386: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1EUFA.pdb:1387: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1EUFA.pdb:1388: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1EUFA.pdb:1401: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1EUFA.pdb:1402: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1EUFA.pdb:1403: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1EUFA.pdb:1404: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1EUFA.pdb:1405: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1EUFA.pdb:1406: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1EUFA.pdb:1495: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1EUFA.pdb:1496: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1EUFA.pdb:1497: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1EUFA.pdb:1498: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1EUFA.pdb:1499: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1EUFA.pdb:1500: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1EUFA.pdb:1622: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1EUFA.pdb:1623: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1EUFA.pdb:1624: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1EUFA.pdb:1625: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1EUFA.pdb:1626: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1EUFA.pdb:1627: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1EUFA.pdb:1628: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1EUFA.pdb:1629: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1EUFA.pdb:1630: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1EUFA.pdb:1631: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1EUFA.pdb:1632: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1EUFA.pdb:1633: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1EUFA.pdb:1653: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1EUFA.pdb:1654: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1EUFA.pdb:1655: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1EUFA.pdb:1656: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1EUFA.pdb:1657: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1EUFA.pdb:1658: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1EUFA.pdb:1691: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1EUFA.pdb:1692: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1EUFA.pdb:1693: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1EUFA.pdb:1694: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1EUFA.pdb:1695: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1EUFA.pdb:1696: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/proteases_large.html:19: ND ==> AND, 2ND
data/t-coffee-13.41.0.28bdc39+dfsg/example/proteases_large.html:19: MATA ==> META, MATER
data/t-coffee-13.41.0.28bdc39+dfsg/example/proteases_large.html:19: ND ==> AND, 2ND
data/t-coffee-13.41.0.28bdc39+dfsg/example/proteases_large.html:19: ND ==> AND, 2ND
data/t-coffee-13.41.0.28bdc39+dfsg/example/proteases_large.html:19: ND ==> AND, 2ND
data/t-coffee-13.41.0.28bdc39+dfsg/example/b11.tcmafft.html:19: ND ==> AND, 2ND
data/t-coffee-13.41.0.28bdc39+dfsg/example/2ZKSA.pdb:10: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2ZKSA.pdb:11: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2ZKSA.pdb:11: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2ZKSA.pdb:14: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2ZKSA.pdb:17: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2ZKSA.pdb:18: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2ZKSA.pdb:19: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2ZKSA.pdb:20: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2ZKSA.pdb:21: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2ZKSA.pdb:22: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2ZKSA.pdb:22: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2ZKSA.pdb:22: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2ZKSA.pdb:23: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2ZKSA.pdb:23: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2ZKSA.pdb:25: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2ZKSA.pdb:25: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2ZKSA.pdb:25: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2ZKSA.pdb:27: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2ZKSA.pdb:27: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2ZKSA.pdb:104: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2ZKSA.pdb:105: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2ZKSA.pdb:106: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2ZKSA.pdb:107: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2ZKSA.pdb:108: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2ZKSA.pdb:109: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2ZKSA.pdb:153: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2ZKSA.pdb:154: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2ZKSA.pdb:155: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2ZKSA.pdb:156: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2ZKSA.pdb:157: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2ZKSA.pdb:158: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2ZKSA.pdb:199: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2ZKSA.pdb:200: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2ZKSA.pdb:201: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2ZKSA.pdb:202: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2ZKSA.pdb:203: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2ZKSA.pdb:204: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2ZKSA.pdb:489: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2ZKSA.pdb:490: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2ZKSA.pdb:491: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2ZKSA.pdb:492: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2ZKSA.pdb:493: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2ZKSA.pdb:494: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2ZKSA.pdb:784: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2ZKSA.pdb:785: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2ZKSA.pdb:786: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2ZKSA.pdb:787: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2ZKSA.pdb:788: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2ZKSA.pdb:789: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2ZKSA.pdb:862: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2ZKSA.pdb:863: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2ZKSA.pdb:864: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2ZKSA.pdb:865: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2ZKSA.pdb:866: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2ZKSA.pdb:867: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2ZKSA.pdb:949: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2ZKSA.pdb:950: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2ZKSA.pdb:951: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2ZKSA.pdb:952: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2ZKSA.pdb:953: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2ZKSA.pdb:954: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2ZKSA.pdb:1051: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2ZKSA.pdb:1052: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2ZKSA.pdb:1053: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2ZKSA.pdb:1054: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2ZKSA.pdb:1055: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2ZKSA.pdb:1056: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2ZKSA.pdb:1207: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2ZKSA.pdb:1208: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2ZKSA.pdb:1209: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2ZKSA.pdb:1210: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2ZKSA.pdb:1211: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2ZKSA.pdb:1212: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2ZKSA.pdb:1261: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2ZKSA.pdb:1262: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2ZKSA.pdb:1263: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2ZKSA.pdb:1264: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2ZKSA.pdb:1265: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2ZKSA.pdb:1266: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2ZKSA.pdb:1275: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2ZKSA.pdb:1276: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2ZKSA.pdb:1277: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2ZKSA.pdb:1278: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2ZKSA.pdb:1279: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2ZKSA.pdb:1280: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2ZKSA.pdb:1288: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2ZKSA.pdb:1289: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2ZKSA.pdb:1290: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2ZKSA.pdb:1291: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2ZKSA.pdb:1292: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2ZKSA.pdb:1293: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2ZKSA.pdb:1341: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2ZKSA.pdb:1342: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2ZKSA.pdb:1343: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2ZKSA.pdb:1344: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2ZKSA.pdb:1345: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2ZKSA.pdb:1346: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2ZKSA.pdb:1412: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2ZKSA.pdb:1413: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2ZKSA.pdb:1414: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2ZKSA.pdb:1415: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2ZKSA.pdb:1416: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2ZKSA.pdb:1417: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2ZKSA.pdb:1521: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2ZKSA.pdb:1522: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2ZKSA.pdb:1523: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2ZKSA.pdb:1524: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2ZKSA.pdb:1525: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2ZKSA.pdb:1526: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2ZKSA.pdb:1538: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2ZKSA.pdb:1539: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2ZKSA.pdb:1540: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2ZKSA.pdb:1541: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2ZKSA.pdb:1542: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2ZKSA.pdb:1543: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2ZKSA.pdb:1544: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2ZKSA.pdb:1545: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2ZKSA.pdb:1546: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2ZKSA.pdb:1547: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2ZKSA.pdb:1548: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2ZKSA.pdb:1549: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2ZKSA.pdb:1693: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2ZKSA.pdb:1694: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2ZKSA.pdb:1695: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2ZKSA.pdb:1696: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2ZKSA.pdb:1697: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2ZKSA.pdb:1698: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2ZKSA.pdb:1770: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2ZKSA.pdb:1771: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2ZKSA.pdb:1772: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2ZKSA.pdb:1773: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2ZKSA.pdb:1774: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2ZKSA.pdb:1775: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/color_cons.html:19: dne ==> done
data/t-coffee-13.41.0.28bdc39+dfsg/example/color_cons.html:19: te ==> the, be, we
data/t-coffee-13.41.0.28bdc39+dfsg/example/1SGFX.pdb:10: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1SGFX.pdb:13: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1SGFX.pdb:14: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1SGFX.pdb:15: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1SGFX.pdb:17: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1SGFX.pdb:17: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1SGFX.pdb:20: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1SGFX.pdb:20: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1SGFX.pdb:22: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1SGFX.pdb:23: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1SGFX.pdb:23: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1SGFX.pdb:23: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1SGFX.pdb:25: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1SGFX.pdb:26: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1SGFX.pdb:27: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1SGFX.pdb:28: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1SGFX.pdb:29: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1SGFX.pdb:30: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1SGFX.pdb:444: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1SGFX.pdb:445: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1SGFX.pdb:446: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1SGFX.pdb:447: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1SGFX.pdb:448: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1SGFX.pdb:449: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1SGFX.pdb:560: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1SGFX.pdb:561: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1SGFX.pdb:562: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1SGFX.pdb:563: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1SGFX.pdb:564: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1SGFX.pdb:565: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1SGFX.pdb:633: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1SGFX.pdb:634: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1SGFX.pdb:635: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1SGFX.pdb:636: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1SGFX.pdb:637: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1SGFX.pdb:638: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1SGFX.pdb:804: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1SGFX.pdb:805: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1SGFX.pdb:806: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1SGFX.pdb:807: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1SGFX.pdb:808: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1SGFX.pdb:809: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1SGFX.pdb:836: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1SGFX.pdb:837: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1SGFX.pdb:838: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1SGFX.pdb:839: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1SGFX.pdb:840: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1SGFX.pdb:841: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1SGFX.pdb:1082: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1SGFX.pdb:1083: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1SGFX.pdb:1084: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1SGFX.pdb:1085: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1SGFX.pdb:1086: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1SGFX.pdb:1087: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1SGFX.pdb:1140: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1SGFX.pdb:1141: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1SGFX.pdb:1142: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1SGFX.pdb:1143: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1SGFX.pdb:1144: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1SGFX.pdb:1145: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1SGFX.pdb:1239: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1SGFX.pdb:1240: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1SGFX.pdb:1241: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1SGFX.pdb:1242: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1SGFX.pdb:1243: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1SGFX.pdb:1244: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1SGFX.pdb:1328: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1SGFX.pdb:1329: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1SGFX.pdb:1330: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1SGFX.pdb:1331: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1SGFX.pdb:1332: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1SGFX.pdb:1333: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1SGFX.pdb:1405: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1SGFX.pdb:1406: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1SGFX.pdb:1407: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1SGFX.pdb:1408: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1SGFX.pdb:1409: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1SGFX.pdb:1410: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1SGFX.pdb:1411: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1SGFX.pdb:1412: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1SGFX.pdb:1413: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1SGFX.pdb:1414: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1SGFX.pdb:1415: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/1SGFX.pdb:1416: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2RPJ1.pdb:10: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2RPJ1.pdb:10: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2RPJ1.pdb:10: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2RPJ1.pdb:10: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2RPJ1.pdb:11: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2RPJ1.pdb:12: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2RPJ1.pdb:37: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2RPJ1.pdb:38: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2RPJ1.pdb:39: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2RPJ1.pdb:40: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2RPJ1.pdb:41: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2RPJ1.pdb:42: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2RPJ1.pdb:43: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2RPJ1.pdb:44: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2RPJ1.pdb:45: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2RPJ1.pdb:46: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2RPJ1.pdb:47: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2RPJ1.pdb:79: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2RPJ1.pdb:80: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2RPJ1.pdb:81: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2RPJ1.pdb:82: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2RPJ1.pdb:83: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2RPJ1.pdb:84: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2RPJ1.pdb:85: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2RPJ1.pdb:86: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2RPJ1.pdb:87: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2RPJ1.pdb:88: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2RPJ1.pdb:89: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2RPJ1.pdb:90: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2RPJ1.pdb:91: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2RPJ1.pdb:92: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2RPJ1.pdb:93: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2RPJ1.pdb:94: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2RPJ1.pdb:95: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2RPJ1.pdb:96: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2RPJ1.pdb:97: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2RPJ1.pdb:98: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2RPJ1.pdb:99: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2RPJ1.pdb:100: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2RPJ1.pdb:125: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2RPJ1.pdb:126: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2RPJ1.pdb:127: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2RPJ1.pdb:128: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2RPJ1.pdb:129: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2RPJ1.pdb:130: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2RPJ1.pdb:131: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2RPJ1.pdb:132: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2RPJ1.pdb:133: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2RPJ1.pdb:134: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2RPJ1.pdb:135: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2RPJ1.pdb:270: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2RPJ1.pdb:271: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2RPJ1.pdb:272: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2RPJ1.pdb:273: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2RPJ1.pdb:274: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2RPJ1.pdb:275: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2RPJ1.pdb:276: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2RPJ1.pdb:277: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2RPJ1.pdb:278: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2RPJ1.pdb:279: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2RPJ1.pdb:280: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2RPJ1.pdb:380: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2RPJ1.pdb:381: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2RPJ1.pdb:382: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2RPJ1.pdb:383: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2RPJ1.pdb:384: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2RPJ1.pdb:385: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2RPJ1.pdb:386: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2RPJ1.pdb:387: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2RPJ1.pdb:388: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2RPJ1.pdb:389: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/2RPJ1.pdb:390: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/example/proteases_small_g10.html:19: WLL ==> WILL
data/t-coffee-13.41.0.28bdc39+dfsg/example/proteases_small_g10.html:19: TE ==> THE, BE, WE
data/t-coffee-13.41.0.28bdc39+dfsg/example/proteases_small_g10.html:19: AKE ==> ACHE
data/t-coffee-13.41.0.28bdc39+dfsg/example/proteases_small_g10.html:19: EDE ==> EDGE
data/t-coffee-13.41.0.28bdc39+dfsg/example/proteases_small_g10.html:19: ND ==> AND, 2ND
data/t-coffee-13.41.0.28bdc39+dfsg/example/proteases_small_g10.html:19: EDE ==> EDGE
data/t-coffee-13.41.0.28bdc39+dfsg/example/proteases_small_g10.html:19: TE ==> THE, BE, WE
data/t-coffee-13.41.0.28bdc39+dfsg/example/proteases_small_g10.html:19: EDE ==> EDGE
data/t-coffee-13.41.0.28bdc39+dfsg/example/proteases_small_g10.html:19: THQ ==> THE
data/t-coffee-13.41.0.28bdc39+dfsg/example/test.aln.html:19: TE ==> THE, BE, WE
data/t-coffee-13.41.0.28bdc39+dfsg/example/test.aln.html:19: SEH ==> SHE
data/t-coffee-13.41.0.28bdc39+dfsg/example/test.aln.html:19: ND ==> AND, 2ND
data/t-coffee-13.41.0.28bdc39+dfsg/example/test.aln.html:19: ND ==> AND, 2ND
data/t-coffee-13.41.0.28bdc39+dfsg/example/test.aln.html:19: ND ==> AND, 2ND
data/t-coffee-13.41.0.28bdc39+dfsg/example/tc_generic_method.pl:529: WARNIG ==> WARNING
data/t-coffee-13.41.0.28bdc39+dfsg/example/tc_generic_method.pl:865: struc ==> struct
data/t-coffee-13.41.0.28bdc39+dfsg/example/tc_generic_method.pl:873: struc ==> struct
data/t-coffee-13.41.0.28bdc39+dfsg/example/tc_generic_method.pl:874: struc ==> struct
data/t-coffee-13.41.0.28bdc39+dfsg/example/tc_generic_method.pl:875: struc ==> struct
data/t-coffee-13.41.0.28bdc39+dfsg/example/tc_generic_method.pl:876: struc ==> struct
data/t-coffee-13.41.0.28bdc39+dfsg/example/tc_generic_method.pl:877: struc ==> struct
data/t-coffee-13.41.0.28bdc39+dfsg/example/tc_generic_method.pl:888: struc ==> struct
data/t-coffee-13.41.0.28bdc39+dfsg/example/tc_generic_method.pl:1843: unkown ==> unknown
data/t-coffee-13.41.0.28bdc39+dfsg/t_coffee_source/TMalign.f:586: interation ==> iteration, interaction
data/t-coffee-13.41.0.28bdc39+dfsg/t_coffee_source/TMalign.f:628: interation ==> iteration, interaction
data/t-coffee-13.41.0.28bdc39+dfsg/t_coffee_source/TMalign.f:671: interation ==> iteration, interaction
data/t-coffee-13.41.0.28bdc39+dfsg/t_coffee_source/TMalign.f:714: interation ==> iteration, interaction
data/t-coffee-13.41.0.28bdc39+dfsg/t_coffee_source/TMalign.f:1961: reoder ==> reorder
data/t-coffee-13.41.0.28bdc39+dfsg/t_coffee_source/TMalign.f:2205: reoder ==> reorder
data/t-coffee-13.41.0.28bdc39+dfsg/t_coffee_source/matrices.h:568: descibed ==> described
data/t-coffee-13.41.0.28bdc39+dfsg/t_coffee_source/programmes_define.h:47: expresso ==> espresso
data/t-coffee-13.41.0.28bdc39+dfsg/t_coffee_source/programmes_define.h:63: expresso ==> espresso
data/t-coffee-13.41.0.28bdc39+dfsg/t_coffee_source/programmes_define.h:230: expresso ==> espresso
data/t-coffee-13.41.0.28bdc39+dfsg/t_coffee_source/programmes_define.h:240: expresso ==> espresso
data/t-coffee-13.41.0.28bdc39+dfsg/t_coffee_source/programmes_define.h:248: expresso ==> espresso
data/t-coffee-13.41.0.28bdc39+dfsg/t_coffee_source/programmes_define.h:257: expresso ==> espresso
data/t-coffee-13.41.0.28bdc39+dfsg/t_coffee_source/programmes_define.h:265: expresso ==> espresso
data/t-coffee-13.41.0.28bdc39+dfsg/t_coffee_source/programmes_define.h:273: expresso ==> espresso
data/t-coffee-13.41.0.28bdc39+dfsg/t_coffee_source/programmes_define.h:282: expresso ==> espresso
data/t-coffee-13.41.0.28bdc39+dfsg/t_coffee_source/programmes_define.h:343: expresso ==> espresso
data/t-coffee-13.41.0.28bdc39+dfsg/t_coffee_source/programmes_define.h:352: expresso ==> espresso
data/t-coffee-13.41.0.28bdc39+dfsg/t_coffee_source/programmes_define.h:360: expresso ==> espresso
data/t-coffee-13.41.0.28bdc39+dfsg/t_coffee_source/programmes_define.h:368: expresso ==> espresso
data/t-coffee-13.41.0.28bdc39+dfsg/t_coffee_source/programmes_define.h:383: expresso ==> espresso
data/t-coffee-13.41.0.28bdc39+dfsg/t_coffee_source/programmes_define.h:420: REFORMATING ==> REFORMATTING
data/t-coffee-13.41.0.28bdc39+dfsg/t_coffee_source/coffee_defines.h:239: FORBIDEN ==> FORBIDDEN
data/t-coffee-13.41.0.28bdc39+dfsg/t_coffee_source/coffee_defines.h:265: FORBIDEN ==> FORBIDDEN
data/t-coffee-13.41.0.28bdc39+dfsg/t_coffee_source/fastal/iteration.c:39: fuctions ==> functions
data/t-coffee-13.41.0.28bdc39+dfsg/t_coffee_source/fastal/parttree.h:52: paramters ==> parameters
data/t-coffee-13.41.0.28bdc39+dfsg/t_coffee_source/fastal/diagonal.c:84: shure ==> sure
data/t-coffee-13.41.0.28bdc39+dfsg/t_coffee_source/fastal/tree.c:337: wheather ==> weather, whether
data/t-coffee-13.41.0.28bdc39+dfsg/t_coffee_source/fastal/tree.c:440: devide ==> divide
data/t-coffee-13.41.0.28bdc39+dfsg/t_coffee_source/fastal/fastal.c:1448: occurences ==> occurrences
data/t-coffee-13.41.0.28bdc39+dfsg/t_coffee_source/fastal/fastal.c:2020: SUCCESFULL ==> SUCCESSFUL
data/t-coffee-13.41.0.28bdc39+dfsg/t_coffee_source/fastal/fastal.c:2155: SUCCESFULL ==> SUCCESSFUL
data/t-coffee-13.41.0.28bdc39+dfsg/t_coffee_source/fastal/fastal.c:2307: SUCCESFULL ==> SUCCESSFUL
data/t-coffee-13.41.0.28bdc39+dfsg/t_coffee_source/fastal/fastal.c:2516: necesarry ==> necessary
data/t-coffee-13.41.0.28bdc39+dfsg/t_coffee_source/fastal/fastal.c:2810: necesarry ==> necessary
data/t-coffee-13.41.0.28bdc39+dfsg/t_coffee_source/fastal/fastal.c:3088: alinment ==> alignment
data/t-coffee-13.41.0.28bdc39+dfsg/t_coffee_source/fastal/fastal.c:3700: follwing ==> following
data/t-coffee-13.41.0.28bdc39+dfsg/t_coffee_source/fastal/fastal.h:58: informations ==> information
data/t-coffee-13.41.0.28bdc39+dfsg/t_coffee_source/fastal/parttree.c:477: finde ==> find
data/t-coffee-13.41.0.28bdc39+dfsg/t_coffee_source/fastal/parttree.c:644: tabels ==> tables
data/t-coffee-13.41.0.28bdc39+dfsg/t_coffee_source/fastal/parttree.c:792: occurences ==> occurrences
data/t-coffee-13.41.0.28bdc39+dfsg/t_coffee_source/fastal/parttree.c:871: occurences ==> occurrences
data/t-coffee-13.41.0.28bdc39+dfsg/t_coffee_source/fastal/parttree.c:872: occurences ==> occurrences
data/t-coffee-13.41.0.28bdc39+dfsg/t_coffee_source/fastal/parttree.c:931: occurences ==> occurrences
data/t-coffee-13.41.0.28bdc39+dfsg/t_coffee_source/fastal/parttree.c:932: occurences ==> occurrences
data/t-coffee-13.41.0.28bdc39+dfsg/t_coffee_source/fastal/parttree.c:1322: finde ==> find
data/t-coffee-13.41.0.28bdc39+dfsg/t_coffee_source/dp_lib/util_dp_drivers.c:2563: te ==> the, be, we
data/t-coffee-13.41.0.28bdc39+dfsg/t_coffee_source/dp_lib/util_dp_drivers.c:5353: ons ==> owns
data/t-coffee-13.41.0.28bdc39+dfsg/t_coffee_source/dp_lib/util_dp_drivers.c:5357: ons ==> owns
data/t-coffee-13.41.0.28bdc39+dfsg/t_coffee_source/dp_lib/util_dp_drivers.c:5366: ons ==> owns
data/t-coffee-13.41.0.28bdc39+dfsg/t_coffee_source/dp_lib/util_dp_sim.c:56: te ==> the, be, we
data/t-coffee-13.41.0.28bdc39+dfsg/t_coffee_source/dp_lib/util_dp_sim.c:265: lenth ==> length
data/t-coffee-13.41.0.28bdc39+dfsg/t_coffee_source/dp_lib/util_dp_sim.c:901: te ==> the, be, we
data/t-coffee-13.41.0.28bdc39+dfsg/t_coffee_source/dp_lib/util_dp_sim.c:902: te ==> the, be, we
data/t-coffee-13.41.0.28bdc39+dfsg/t_coffee_source/dp_lib/util_dp_sim.c:905: te ==> the, be, we
data/t-coffee-13.41.0.28bdc39+dfsg/t_coffee_source/dp_lib/util_dp_sim.c:927: te ==> the, be, we
data/t-coffee-13.41.0.28bdc39+dfsg/t_coffee_source/dp_lib/util_dp_sim.c:927: te ==> the, be, we
data/t-coffee-13.41.0.28bdc39+dfsg/t_coffee_source/dp_lib/util_dp_sim.c:1044: te ==> the, be, we
data/t-coffee-13.41.0.28bdc39+dfsg/t_coffee_source/dp_lib/util_dp_sim.c:1049: te ==> the, be, we
data/t-coffee-13.41.0.28bdc39+dfsg/t_coffee_source/dp_lib/util_dp_sim.c:1060: nd ==> and, 2nd
data/t-coffee-13.41.0.28bdc39+dfsg/t_coffee_source/dp_lib/util_dp_sim.c:1114: nd ==> and, 2nd
data/t-coffee-13.41.0.28bdc39+dfsg/t_coffee_source/dp_lib/util_dp_sim.c:1115: nd ==> and, 2nd
data/t-coffee-13.41.0.28bdc39+dfsg/t_coffee_source/dp_lib/evaluate_for_struc.h:76: struc ==> struct
data/t-coffee-13.41.0.28bdc39+dfsg/t_coffee_source/dp_lib/util_dp_cdna.h:29: te ==> the, be, we
data/t-coffee-13.41.0.28bdc39+dfsg/t_coffee_source/dp_lib/evaluate_for_struc.c:408: ND ==> AND, 2ND
data/t-coffee-13.41.0.28bdc39+dfsg/t_coffee_source/dp_lib/evaluate_for_struc.c:430: ND ==> AND, 2ND
data/t-coffee-13.41.0.28bdc39+dfsg/t_coffee_source/dp_lib/evaluate_for_struc.c:448: ND ==> AND, 2ND
data/t-coffee-13.41.0.28bdc39+dfsg/t_coffee_source/dp_lib/evaluate_for_struc.c:467: ND ==> AND, 2ND
data/t-coffee-13.41.0.28bdc39+dfsg/t_coffee_source/dp_lib/evaluate_for_struc.c:485: ND ==> AND, 2ND
data/t-coffee-13.41.0.28bdc39+dfsg/t_coffee_source/dp_lib/evaluate_for_struc.c:504: ND ==> AND, 2ND
data/t-coffee-13.41.0.28bdc39+dfsg/t_coffee_source/dp_lib/evaluate_for_struc.c:523: ND ==> AND, 2ND
data/t-coffee-13.41.0.28bdc39+dfsg/t_coffee_source/dp_lib/evaluate_for_struc.c:558: ND ==> AND, 2ND
data/t-coffee-13.41.0.28bdc39+dfsg/t_coffee_source/dp_lib/evaluate_for_struc.c:643: ND ==> AND, 2ND
data/t-coffee-13.41.0.28bdc39+dfsg/t_coffee_source/dp_lib/evaluate_for_struc.c:661: ND ==> AND, 2ND
data/t-coffee-13.41.0.28bdc39+dfsg/t_coffee_source/dp_lib/evaluate_for_struc.c:680: ND ==> AND, 2ND
data/t-coffee-13.41.0.28bdc39+dfsg/t_coffee_source/dp_lib/evaluate_for_struc.c:718: ND ==> AND, 2ND
data/t-coffee-13.41.0.28bdc39+dfsg/t_coffee_source/dp_lib/evaluate_for_struc.c:737: ND ==> AND, 2ND
data/t-coffee-13.41.0.28bdc39+dfsg/t_coffee_source/dp_lib/evaluate_for_struc.c:755: ND ==> AND, 2ND
data/t-coffee-13.41.0.28bdc39+dfsg/t_coffee_source/dp_lib/evaluate_for_struc.c:774: ND ==> AND, 2ND
data/t-coffee-13.41.0.28bdc39+dfsg/t_coffee_source/dp_lib/evaluate_for_struc.c:795: ND ==> AND, 2ND
data/t-coffee-13.41.0.28bdc39+dfsg/t_coffee_source/dp_lib/evaluate_for_struc.c:813: ND ==> AND, 2ND
data/t-coffee-13.41.0.28bdc39+dfsg/t_coffee_source/dp_lib/evaluate_for_struc.c:1014: ND ==> AND, 2ND
data/t-coffee-13.41.0.28bdc39+dfsg/t_coffee_source/dp_lib/evaluate_for_struc.c:1032: ND ==> AND, 2ND
data/t-coffee-13.41.0.28bdc39+dfsg/t_coffee_source/dp_lib/evaluate_for_struc.c:1051: ND ==> AND, 2ND
data/t-coffee-13.41.0.28bdc39+dfsg/t_coffee_source/dp_lib/evaluate_for_struc.c:1112: ND ==> AND, 2ND
data/t-coffee-13.41.0.28bdc39+dfsg/t_coffee_source/dp_lib/evaluate_for_struc.c:1129: ND ==> AND, 2ND
data/t-coffee-13.41.0.28bdc39+dfsg/t_coffee_source/dp_lib/evaluate_for_struc.c:1815: referencial ==> referential
data/t-coffee-13.41.0.28bdc39+dfsg/t_coffee_source/dp_lib/evaluate_for_struc.c:1819: Referencial ==> Referential
data/t-coffee-13.41.0.28bdc39+dfsg/t_coffee_source/dp_lib/evaluate_for_struc.c:1829: Referencial ==> Referential
data/t-coffee-13.41.0.28bdc39+dfsg/t_coffee_source/dp_lib/evaluate_for_struc.c:1838: REFERENCIAL ==> REFERENTIAL
data/t-coffee-13.41.0.28bdc39+dfsg/t_coffee_source/dp_lib/evaluate_for_struc.c:2028: minimsation ==> minimisation
data/t-coffee-13.41.0.28bdc39+dfsg/t_coffee_source/dp_lib/evaluate_for_struc.c:2379: BA ==> BY, BE
data/t-coffee-13.41.0.28bdc39+dfsg/t_coffee_source/dp_lib/evaluate_for_struc.c:2417: BA ==> BY, BE
data/t-coffee-13.41.0.28bdc39+dfsg/t_coffee_source/dp_lib/evaluate_for_struc.c:2417: BA ==> BY, BE
data/t-coffee-13.41.0.28bdc39+dfsg/t_coffee_source/dp_lib/evaluate_for_struc.c:2488: BA ==> BY, BE
data/t-coffee-13.41.0.28bdc39+dfsg/t_coffee_source/dp_lib/evaluate_for_struc.c:2495: BA ==> BY, BE
data/t-coffee-13.41.0.28bdc39+dfsg/t_coffee_source/dp_lib/evaluate_for_struc.c:2617: BA ==> BY, BE
data/t-coffee-13.41.0.28bdc39+dfsg/t_coffee_source/dp_lib/evaluate_for_struc.c:2945: BA ==> BY, BE
data/t-coffee-13.41.0.28bdc39+dfsg/t_coffee_source/dp_lib/util_dp_mm_nw.c:169: te ==> the, be, we
data/t-coffee-13.41.0.28bdc39+dfsg/t_coffee_source/dp_lib/util_dp_mm_nw.c:233: te ==> the, be, we
data/t-coffee-13.41.0.28bdc39+dfsg/t_coffee_source/dp_lib/util_dp_mm_nw.c:233: te ==> the, be, we
data/t-coffee-13.41.0.28bdc39+dfsg/t_coffee_source/dp_lib/util_dp_mm_nw.c:295: te ==> the, be, we
data/t-coffee-13.41.0.28bdc39+dfsg/t_coffee_source/dp_lib/util_dp_mm_nw.c:302: te ==> the, be, we
data/t-coffee-13.41.0.28bdc39+dfsg/t_coffee_source/dp_lib/util_dp_mm_nw.c:348: te ==> the, be, we
data/t-coffee-13.41.0.28bdc39+dfsg/t_coffee_source/dp_lib/util_dp_mm_nw.c:354: te ==> the, be, we
data/t-coffee-13.41.0.28bdc39+dfsg/t_coffee_source/dp_lib/evaluate_for_domain.c:124: substracted ==> subtracted
data/t-coffee-13.41.0.28bdc39+dfsg/t_coffee_source/dp_lib/evaluate_for_domain.c:126: toi ==> to, toy
data/t-coffee-13.41.0.28bdc39+dfsg/t_coffee_source/dp_lib/evaluate_for_domain.c:148: substracted ==> subtracted
data/t-coffee-13.41.0.28bdc39+dfsg/t_coffee_source/dp_lib/evaluate_for_domain.c:150: toi ==> to, toy
data/t-coffee-13.41.0.28bdc39+dfsg/t_coffee_source/dp_lib/evaluate_for_domain.c:175: evalation ==> evaluation
data/t-coffee-13.41.0.28bdc39+dfsg/t_coffee_source/dp_lib/evaluate_for_domain.c:239: exluded ==> excluded, exuded
data/t-coffee-13.41.0.28bdc39+dfsg/t_coffee_source/dp_lib/evaluate_for_domain.c:266: comming ==> coming
data/t-coffee-13.41.0.28bdc39+dfsg/t_coffee_source/dp_lib/showpair.c:90: occurence ==> occurrence
data/t-coffee-13.41.0.28bdc39+dfsg/t_coffee_source/dp_lib/showpair.c:325: Dependant ==> Dependent
data/t-coffee-13.41.0.28bdc39+dfsg/t_coffee_source/dp_lib/util_dp_fasta_nw.c:344: alignmnet ==> alignment
data/t-coffee-13.41.0.28bdc39+dfsg/t_coffee_source/dp_lib/util_dp_fasta_nw.c:842: tunned ==> tuned
data/t-coffee-13.41.0.28bdc39+dfsg/t_coffee_source/dp_lib/util_dp_fasta_nw.c:889: flaged ==> flagged
data/t-coffee-13.41.0.28bdc39+dfsg/t_coffee_source/dp_lib/evaluate.c:1162: nNumber ==> number
data/t-coffee-13.41.0.28bdc39+dfsg/t_coffee_source/dp_lib/evaluate.c:1763: lowD ==> load, low, loud
data/t-coffee-13.41.0.28bdc39+dfsg/t_coffee_source/dp_lib/evaluate.c:1764: nd ==> and, 2nd
data/t-coffee-13.41.0.28bdc39+dfsg/t_coffee_source/dp_lib/evaluate.c:1779: environement ==> environment
data/t-coffee-13.41.0.28bdc39+dfsg/t_coffee_source/dp_lib/evaluate.c:1936: lowD ==> load, low, loud
data/t-coffee-13.41.0.28bdc39+dfsg/t_coffee_source/dp_lib/evaluate.c:1937: lowD ==> load, low, loud
data/t-coffee-13.41.0.28bdc39+dfsg/t_coffee_source/dp_lib/evaluate.c:1938: lowD ==> load, low, loud
data/t-coffee-13.41.0.28bdc39+dfsg/t_coffee_source/dp_lib/evaluate.c:1939: nd ==> and, 2nd
data/t-coffee-13.41.0.28bdc39+dfsg/t_coffee_source/dp_lib/evaluate.c:1939: lowD ==> load, low, loud
data/t-coffee-13.41.0.28bdc39+dfsg/t_coffee_source/dp_lib/evaluate.c:1939: nd ==> and, 2nd
data/t-coffee-13.41.0.28bdc39+dfsg/t_coffee_source/dp_lib/evaluate.c:1973: nd ==> and, 2nd
data/t-coffee-13.41.0.28bdc39+dfsg/t_coffee_source/dp_lib/evaluate.c:2009: lowD ==> load, low, loud
data/t-coffee-13.41.0.28bdc39+dfsg/t_coffee_source/dp_lib/evaluate.c:2218: symetrical ==> symmetrical
data/t-coffee-13.41.0.28bdc39+dfsg/t_coffee_source/dp_lib/evaluate.c:2231: symetrical ==> symmetrical
data/t-coffee-13.41.0.28bdc39+dfsg/t_coffee_source/dp_lib/evaluate.c:3845: colum ==> column
data/t-coffee-13.41.0.28bdc39+dfsg/t_coffee_source/dp_lib/evaluate.c:3848: occurences ==> occurrences
data/t-coffee-13.41.0.28bdc39+dfsg/t_coffee_source/dp_lib/evaluate.c:4035: GETING ==> GETTING
data/t-coffee-13.41.0.28bdc39+dfsg/t_coffee_source/dp_lib/evaluate.c:4404: wit ==> with
data/t-coffee-13.41.0.28bdc39+dfsg/t_coffee_source/dp_lib/evaluate.c:4455: extention ==> extension
data/t-coffee-13.41.0.28bdc39+dfsg/t_coffee_source/dp_lib/evaluate.c:4745: extention ==> extension
data/t-coffee-13.41.0.28bdc39+dfsg/t_coffee_source/dp_lib/evaluate.c:4764: FORBIDEN ==> FORBIDDEN
data/t-coffee-13.41.0.28bdc39+dfsg/t_coffee_source/dp_lib/evaluate.c:4781: FORBIDEN ==> FORBIDDEN
data/t-coffee-13.41.0.28bdc39+dfsg/t_coffee_source/dp_lib/evaluate.c:4822: extention ==> extension
data/t-coffee-13.41.0.28bdc39+dfsg/t_coffee_source/dp_lib/evaluate.c:4841: FORBIDEN ==> FORBIDDEN
data/t-coffee-13.41.0.28bdc39+dfsg/t_coffee_source/dp_lib/evaluate.c:4858: FORBIDEN ==> FORBIDDEN
data/t-coffee-13.41.0.28bdc39+dfsg/t_coffee_source/dp_lib/evaluate.c:4904: extention ==> extension
data/t-coffee-13.41.0.28bdc39+dfsg/t_coffee_source/dp_lib/evaluate.c:4923: FORBIDEN ==> FORBIDDEN
data/t-coffee-13.41.0.28bdc39+dfsg/t_coffee_source/dp_lib/evaluate.c:4943: FORBIDEN ==> FORBIDDEN
data/t-coffee-13.41.0.28bdc39+dfsg/t_coffee_source/dp_lib/evaluate.c:5011: FORBIDEN ==> FORBIDDEN
data/t-coffee-13.41.0.28bdc39+dfsg/t_coffee_source/dp_lib/evaluate.c:5029: FORBIDEN ==> FORBIDDEN
data/t-coffee-13.41.0.28bdc39+dfsg/t_coffee_source/dp_lib/evaluate.c:5105: extention ==> extension
data/t-coffee-13.41.0.28bdc39+dfsg/t_coffee_source/dp_lib/evaluate.c:5182: extention ==> extension
data/t-coffee-13.41.0.28bdc39+dfsg/t_coffee_source/dp_lib/evaluate.c:5335: extention ==> extension
data/t-coffee-13.41.0.28bdc39+dfsg/t_coffee_source/dp_lib/evaluate.c:5413: extention ==> extension
data/t-coffee-13.41.0.28bdc39+dfsg/t_coffee_source/dp_lib/evaluate.c:5481: GETING ==> GETTING
data/t-coffee-13.41.0.28bdc39+dfsg/t_coffee_source/dp_lib/evaluate.c:5892: beween ==> between
data/t-coffee-13.41.0.28bdc39+dfsg/t_coffee_source/dp_lib/evaluate.c:6381: colum ==> column
data/t-coffee-13.41.0.28bdc39+dfsg/t_coffee_source/dp_lib/evaluate.c:6384: occurences ==> occurrences
data/t-coffee-13.41.0.28bdc39+dfsg/t_coffee_source/dp_lib/evaluate.c:6453: colum ==> column
data/t-coffee-13.41.0.28bdc39+dfsg/t_coffee_source/dp_lib/evaluate.c:6456: occurences ==> occurrences
data/t-coffee-13.41.0.28bdc39+dfsg/t_coffee_source/dp_lib/evaluate.c:7656: assignes ==> assigns
data/t-coffee-13.41.0.28bdc39+dfsg/t_coffee_source/dp_lib/evaluate.c:8182: alignement ==> alignment
data/t-coffee-13.41.0.28bdc39+dfsg/t_coffee_source/dp_lib/evaluate.c:8184: bloc ==> block
data/t-coffee-13.41.0.28bdc39+dfsg/t_coffee_source/dp_lib/evaluate.h:89: GETING ==> GETTING
data/t-coffee-13.41.0.28bdc39+dfsg/t_coffee_source/dp_lib/fasta_dp.h:34: alph ==> alpha
data/t-coffee-13.41.0.28bdc39+dfsg/t_coffee_source/dp_lib/util_dp_fasta_nw.h:48: alph ==> alpha
data/t-coffee-13.41.0.28bdc39+dfsg/t_coffee_source/dp_lib/util_dp.h:29: te ==> the, be, we
data/t-coffee-13.41.0.28bdc39+dfsg/t_coffee_source/dp_lib/util_domain_dp.c:91: Varaibles ==> Variables
data/t-coffee-13.41.0.28bdc39+dfsg/t_coffee_source/dp_lib/util_domain_dp.c:392: occurences ==> occurrences
data/t-coffee-13.41.0.28bdc39+dfsg/t_coffee_source/dp_lib/util_dp_mm_nw.h:29: te ==> the, be, we
data/t-coffee-13.41.0.28bdc39+dfsg/t_coffee_source/dp_lib/CUSTOM_evaluate_for_struc.c:138: responsability ==> responsibility
data/t-coffee-13.41.0.28bdc39+dfsg/t_coffee_source/dp_lib/CUSTOM_evaluate_for_struc.c:143: appart ==> apart
data/t-coffee-13.41.0.28bdc39+dfsg/t_coffee_source/dp_lib/CUSTOM_evaluate_for_struc.c:177: environemnts ==> environments
data/t-coffee-13.41.0.28bdc39+dfsg/t_coffee_source/dp_lib/CUSTOM_evaluate_for_struc.c:282: environemnts ==> environments
data/t-coffee-13.41.0.28bdc39+dfsg/t_coffee_source/dp_lib/fsa_dp.h:36: forbiden ==> forbidden
data/t-coffee-13.41.0.28bdc39+dfsg/t_coffee_source/dp_lib/fsa_dp.h:36: Forbiden ==> Forbidden
data/t-coffee-13.41.0.28bdc39+dfsg/t_coffee_source/dp_lib/fsa_dp.h:46: sate ==> state
data/t-coffee-13.41.0.28bdc39+dfsg/t_coffee_source/dp_lib/fsa_dp.h:47: sate ==> state
data/t-coffee-13.41.0.28bdc39+dfsg/t_coffee_source/dp_lib/fsa_dp.h:100: Mamagement ==> Management
data/t-coffee-13.41.0.28bdc39+dfsg/t_coffee_source/data_headers/perl_header_lib.h:34: auhtor ==> author
data/t-coffee-13.41.0.28bdc39+dfsg/t_coffee_source/data_headers/programmes_define.h:191: REFORMATING ==> REFORMATTING
data/t-coffee-13.41.0.28bdc39+dfsg/t_coffee_source/util_lib/aln_convertion_util.h:111: forbiden ==> forbidden
data/t-coffee-13.41.0.28bdc39+dfsg/t_coffee_source/util_lib/aln_convertion_util.h:512: cluser ==> cluster
data/t-coffee-13.41.0.28bdc39+dfsg/t_coffee_source/util_lib/aln_convertion_util.c:1583: forbiden ==> forbidden
data/t-coffee-13.41.0.28bdc39+dfsg/t_coffee_source/util_lib/aln_convertion_util.c:1602: forbiden ==> forbidden
data/t-coffee-13.41.0.28bdc39+dfsg/t_coffee_source/util_lib/aln_convertion_util.c:2009: alignmnet ==> alignment
data/t-coffee-13.41.0.28bdc39+dfsg/t_coffee_source/util_lib/aln_convertion_util.c:3667: thw ==> the, thaw
data/t-coffee-13.41.0.28bdc39+dfsg/t_coffee_source/util_lib/aln_convertion_util.c:4769: struc ==> struct
data/t-coffee-13.41.0.28bdc39+dfsg/t_coffee_source/util_lib/aln_convertion_util.c:4782: struc ==> struct
data/t-coffee-13.41.0.28bdc39+dfsg/t_coffee_source/util_lib/aln_convertion_util.c:5150: loger ==> logger, lodger, longer
data/t-coffee-13.41.0.28bdc39+dfsg/t_coffee_source/util_lib/aln_convertion_util.c:5245: correspondance ==> correspondence
data/t-coffee-13.41.0.28bdc39+dfsg/t_coffee_source/util_lib/aln_convertion_util.c:5246: correspondance ==> correspondence
data/t-coffee-13.41.0.28bdc39+dfsg/t_coffee_source/util_lib/aln_convertion_util.c:5247: tye ==> type, tie
data/t-coffee-13.41.0.28bdc39+dfsg/t_coffee_source/util_lib/aln_convertion_util.c:5248: correspondance ==> correspondence
data/t-coffee-13.41.0.28bdc39+dfsg/t_coffee_source/util_lib/aln_convertion_util.c:5531: discrepencies ==> discrepancies
data/t-coffee-13.41.0.28bdc39+dfsg/t_coffee_source/util_lib/aln_convertion_util.c:5829: calles ==> calls
data/t-coffee-13.41.0.28bdc39+dfsg/t_coffee_source/util_lib/aln_convertion_util.c:5829: itselt ==> itself
data/t-coffee-13.41.0.28bdc39+dfsg/t_coffee_source/util_lib/aln_convertion_util.c:5832: EXPRESSO ==> ESPRESSO
data/t-coffee-13.41.0.28bdc39+dfsg/t_coffee_source/util_lib/aln_convertion_util.c:5977: EXPRESSO ==> ESPRESSO
data/t-coffee-13.41.0.28bdc39+dfsg/t_coffee_source/util_lib/aln_convertion_util.c:6102: submited ==> submitted
data/t-coffee-13.41.0.28bdc39+dfsg/t_coffee_source/util_lib/aln_convertion_util.c:6147: submited ==> submitted
data/t-coffee-13.41.0.28bdc39+dfsg/t_coffee_source/util_lib/aln_convertion_util.c:6177: submited ==> submitted
data/t-coffee-13.41.0.28bdc39+dfsg/t_coffee_source/util_lib/aln_convertion_util.c:6178: submited ==> submitted
data/t-coffee-13.41.0.28bdc39+dfsg/t_coffee_source/util_lib/aln_convertion_util.c:6178: submited ==> submitted
data/t-coffee-13.41.0.28bdc39+dfsg/t_coffee_source/util_lib/aln_convertion_util.c:6182: submited ==> submitted
data/t-coffee-13.41.0.28bdc39+dfsg/t_coffee_source/util_lib/aln_convertion_util.c:6182: submited ==> submitted
data/t-coffee-13.41.0.28bdc39+dfsg/t_coffee_source/util_lib/aln_convertion_util.c:6472: struc ==> struct
data/t-coffee-13.41.0.28bdc39+dfsg/t_coffee_source/util_lib/aln_convertion_util.c:6474: Sequeence ==> Sequence
data/t-coffee-13.41.0.28bdc39+dfsg/t_coffee_source/util_lib/aln_convertion_util.c:7443: Ingored ==> Ignored
data/t-coffee-13.41.0.28bdc39+dfsg/t_coffee_source/util_lib/aln_convertion_util.c:7671: overlaping ==> overlapping
data/t-coffee-13.41.0.28bdc39+dfsg/t_coffee_source/util_lib/aln_convertion_util.c:7939: seqences ==> sequences
data/t-coffee-13.41.0.28bdc39+dfsg/t_coffee_source/util_lib/aln_convertion_util.c:9703: fo ==> of, for
data/t-coffee-13.41.0.28bdc39+dfsg/t_coffee_source/util_lib/aln_convertion_util.c:9705: overlaping ==> overlapping
data/t-coffee-13.41.0.28bdc39+dfsg/t_coffee_source/util_lib/aln_convertion_util.c:9923: occurence ==> occurrence
data/t-coffee-13.41.0.28bdc39+dfsg/t_coffee_source/util_lib/aln_convertion_util.c:10098: Forbiden ==> Forbidden
data/t-coffee-13.41.0.28bdc39+dfsg/t_coffee_source/util_lib/aln_convertion_util.c:10156: Blurr ==> Blur, blurred
data/t-coffee-13.41.0.28bdc39+dfsg/t_coffee_source/util_lib/aln_convertion_util.c:10429: Informations ==> Information
data/t-coffee-13.41.0.28bdc39+dfsg/t_coffee_source/util_lib/aln_convertion_util.c:10590: ba ==> by, be
data/t-coffee-13.41.0.28bdc39+dfsg/t_coffee_source/util_lib/aln_convertion_util.c:10620: ba ==> by, be
data/t-coffee-13.41.0.28bdc39+dfsg/t_coffee_source/util_lib/aln_convertion_util.c:10625: ba ==> by, be
data/t-coffee-13.41.0.28bdc39+dfsg/t_coffee_source/util_lib/aln_convertion_util.c:10633: classs ==> class
data/t-coffee-13.41.0.28bdc39+dfsg/t_coffee_source/util_lib/aln_convertion_util.c:10640: classs ==> class
data/t-coffee-13.41.0.28bdc39+dfsg/t_coffee_source/util_lib/aln_convertion_util.c:10641: classs ==> class
data/t-coffee-13.41.0.28bdc39+dfsg/t_coffee_source/util_lib/aln_convertion_util.c:10643: classs ==> class
data/t-coffee-13.41.0.28bdc39+dfsg/t_coffee_source/util_lib/aln_convertion_util.c:11496: Informations ==> Information
data/t-coffee-13.41.0.28bdc39+dfsg/t_coffee_source/util_lib/aln_convertion_util.c:12579: ba ==> by, be
data/t-coffee-13.41.0.28bdc39+dfsg/t_coffee_source/util_lib/aln_convertion_util.c:12598: ba ==> by, be
data/t-coffee-13.41.0.28bdc39+dfsg/t_coffee_source/util_lib/aln_convertion_util.c:12606: ba ==> by, be
data/t-coffee-13.41.0.28bdc39+dfsg/t_coffee_source/util_lib/aln_convertion_util.c:12606: ba ==> by, be
data/t-coffee-13.41.0.28bdc39+dfsg/t_coffee_source/util_lib/aln_convertion_util.c:12606: ba ==> by, be
data/t-coffee-13.41.0.28bdc39+dfsg/t_coffee_source/util_lib/aln_convertion_util.c:12609: ba ==> by, be
data/t-coffee-13.41.0.28bdc39+dfsg/t_coffee_source/util_lib/aln_convertion_util.c:12729: FORBIDEN ==> FORBIDDEN
data/t-coffee-13.41.0.28bdc39+dfsg/t_coffee_source/util_lib/aln_convertion_util.c:13242: FO ==> OF, FOR
data/t-coffee-13.41.0.28bdc39+dfsg/t_coffee_source/util_lib/aln_convertion_util.c:13474: FO ==> OF, FOR
data/t-coffee-13.41.0.28bdc39+dfsg/t_coffee_source/util_lib/aln_convertion_util.c:13851: cluser ==> cluster
data/t-coffee-13.41.0.28bdc39+dfsg/t_coffee_source/util_lib/util_make_tree.c:331: seperately ==> separately
data/t-coffee-13.41.0.28bdc39+dfsg/t_coffee_source/util_lib/util_make_tree.c:395: OTU ==> OUT
data/t-coffee-13.41.0.28bdc39+dfsg/t_coffee_source/util_lib/util_make_tree.c:860: OTU ==> OUT
data/t-coffee-13.41.0.28bdc39+dfsg/t_coffee_source/util_lib/util_make_tree.c:2280: boostrap ==> bootstrap
data/t-coffee-13.41.0.28bdc39+dfsg/t_coffee_source/util_lib/reformat_struc.c:274: struc ==> struct
data/t-coffee-13.41.0.28bdc39+dfsg/t_coffee_source/util_lib/reformat_struc.c:642: ba ==> by, be
data/t-coffee-13.41.0.28bdc39+dfsg/t_coffee_source/util_lib/reformat_struc.c:656: ba ==> by, be
data/t-coffee-13.41.0.28bdc39+dfsg/t_coffee_source/util_lib/reformat_struc.c:666: ba ==> by, be
data/t-coffee-13.41.0.28bdc39+dfsg/t_coffee_source/util_lib/reformat_struc.c:666: ba ==> by, be
data/t-coffee-13.41.0.28bdc39+dfsg/t_coffee_source/util_lib/reformat_struc.c:667: ba ==> by, be
data/t-coffee-13.41.0.28bdc39+dfsg/t_coffee_source/util_lib/reformat_struc.c:679: ba ==> by, be
data/t-coffee-13.41.0.28bdc39+dfsg/t_coffee_source/util_lib/reformat_struc.c:682: ba ==> by, be
data/t-coffee-13.41.0.28bdc39+dfsg/t_coffee_source/util_lib/reformat_struc.c:682: ba ==> by, be
data/t-coffee-13.41.0.28bdc39+dfsg/t_coffee_source/util_lib/reformat_struc.c:682: ba ==> by, be
data/t-coffee-13.41.0.28bdc39+dfsg/t_coffee_source/util_lib/reformat_struc.c:692: ba ==> by, be
data/t-coffee-13.41.0.28bdc39+dfsg/t_coffee_source/util_lib/reformat_struc.c:707: ba ==> by, be
data/t-coffee-13.41.0.28bdc39+dfsg/t_coffee_source/util_lib/reformat_struc.c:716: ba ==> by, be
data/t-coffee-13.41.0.28bdc39+dfsg/t_coffee_source/util_lib/reformat_struc.c:716: ba ==> by, be
data/t-coffee-13.41.0.28bdc39+dfsg/t_coffee_source/util_lib/reformat_struc.c:717: ba ==> by, be
data/t-coffee-13.41.0.28bdc39+dfsg/t_coffee_source/util_lib/reformat_struc.c:729: ba ==> by, be
data/t-coffee-13.41.0.28bdc39+dfsg/t_coffee_source/util_lib/reformat_struc.c:732: ba ==> by, be
data/t-coffee-13.41.0.28bdc39+dfsg/t_coffee_source/util_lib/reformat_struc.c:732: ba ==> by, be
data/t-coffee-13.41.0.28bdc39+dfsg/t_coffee_source/util_lib/reformat_struc.c:732: ba ==> by, be
data/t-coffee-13.41.0.28bdc39+dfsg/t_coffee_source/util_lib/reformat_struc.c:732: ba ==> by, be
data/t-coffee-13.41.0.28bdc39+dfsg/t_coffee_source/util_lib/reformat_struc.c:742: ba ==> by, be
data/t-coffee-13.41.0.28bdc39+dfsg/t_coffee_source/util_lib/reformat_struc.c:755: ba ==> by, be
data/t-coffee-13.41.0.28bdc39+dfsg/t_coffee_source/util_lib/reformat_struc.c:765: ba ==> by, be
data/t-coffee-13.41.0.28bdc39+dfsg/t_coffee_source/util_lib/reformat_struc.c:765: ba ==> by, be
data/t-coffee-13.41.0.28bdc39+dfsg/t_coffee_source/util_lib/reformat_struc.c:766: ba ==> by, be
data/t-coffee-13.41.0.28bdc39+dfsg/t_coffee_source/util_lib/reformat_struc.c:778: ba ==> by, be
data/t-coffee-13.41.0.28bdc39+dfsg/t_coffee_source/util_lib/reformat_struc.c:783: ba ==> by, be
data/t-coffee-13.41.0.28bdc39+dfsg/t_coffee_source/util_lib/reformat_struc.c:783: ba ==> by, be
data/t-coffee-13.41.0.28bdc39+dfsg/t_coffee_source/util_lib/reformat_struc.c:783: ba ==> by, be
data/t-coffee-13.41.0.28bdc39+dfsg/t_coffee_source/util_lib/reformat_struc.c:783: ba ==> by, be
data/t-coffee-13.41.0.28bdc39+dfsg/t_coffee_source/util_lib/reformat_struc.c:794: ba ==> by, be
data/t-coffee-13.41.0.28bdc39+dfsg/t_coffee_source/util_lib/reformat_struc.c:808: ba ==> by, be
data/t-coffee-13.41.0.28bdc39+dfsg/t_coffee_source/util_lib/reformat_struc.c:818: ba ==> by, be
data/t-coffee-13.41.0.28bdc39+dfsg/t_coffee_source/util_lib/reformat_struc.c:818: ba ==> by, be
data/t-coffee-13.41.0.28bdc39+dfsg/t_coffee_source/util_lib/reformat_struc.c:819: ba ==> by, be
data/t-coffee-13.41.0.28bdc39+dfsg/t_coffee_source/util_lib/reformat_struc.c:831: ba ==> by, be
data/t-coffee-13.41.0.28bdc39+dfsg/t_coffee_source/util_lib/reformat_struc.c:836: ba ==> by, be
data/t-coffee-13.41.0.28bdc39+dfsg/t_coffee_source/util_lib/reformat_struc.c:836: ba ==> by, be
data/t-coffee-13.41.0.28bdc39+dfsg/t_coffee_source/util_lib/reformat_struc.c:836: ba ==> by, be
data/t-coffee-13.41.0.28bdc39+dfsg/t_coffee_source/util_lib/reformat_struc.c:836: ba ==> by, be
data/t-coffee-13.41.0.28bdc39+dfsg/t_coffee_source/util_lib/reformat_struc.c:836: ba ==> by, be
data/t-coffee-13.41.0.28bdc39+dfsg/t_coffee_source/util_lib/reformat_struc.c:888: betwee ==> between
data/t-coffee-13.41.0.28bdc39+dfsg/t_coffee_source/util_lib/reformat_struc.c:894: corrsponds ==> corresponds
data/t-coffee-13.41.0.28bdc39+dfsg/t_coffee_source/util_lib/reformat_struc.c:932: betwee ==> between
data/t-coffee-13.41.0.28bdc39+dfsg/t_coffee_source/util_lib/reformat_struc.c:938: corrsponds ==> corresponds
data/t-coffee-13.41.0.28bdc39+dfsg/t_coffee_source/util_lib/reformat.c:212: comuted ==> commuted, computed
data/t-coffee-13.41.0.28bdc39+dfsg/t_coffee_source/util_lib/reformat.c:214: colums ==> columns
data/t-coffee-13.41.0.28bdc39+dfsg/t_coffee_source/util_lib/reformat.c:223: Ouputs ==> Outputs
data/t-coffee-13.41.0.28bdc39+dfsg/t_coffee_source/util_lib/reformat.c:277: occurences ==> occurrences
data/t-coffee-13.41.0.28bdc39+dfsg/t_coffee_source/util_lib/reformat.c:317: Streches ==> Stretches
data/t-coffee-13.41.0.28bdc39+dfsg/t_coffee_source/util_lib/reformat.c:340: trigers ==> triggers
data/t-coffee-13.41.0.28bdc39+dfsg/t_coffee_source/util_lib/reformat.c:370: struc ==> struct
data/t-coffee-13.41.0.28bdc39+dfsg/t_coffee_source/util_lib/reformat.c:390: triming ==> trimming, timing
data/t-coffee-13.41.0.28bdc39+dfsg/t_coffee_source/util_lib/reformat.c:404: streches ==> stretches
data/t-coffee-13.41.0.28bdc39+dfsg/t_coffee_source/util_lib/reformat.c:405: withs ==> with, widths
data/t-coffee-13.41.0.28bdc39+dfsg/t_coffee_source/util_lib/reformat.c:424: colum ==> column
data/t-coffee-13.41.0.28bdc39+dfsg/t_coffee_source/util_lib/reformat.c:434: boostrap ==> bootstrap
data/t-coffee-13.41.0.28bdc39+dfsg/t_coffee_source/util_lib/reformat.c:501: appart ==> apart
data/t-coffee-13.41.0.28bdc39+dfsg/t_coffee_source/util_lib/reformat.c:512: appart ==> apart
data/t-coffee-13.41.0.28bdc39+dfsg/t_coffee_source/util_lib/reformat.c:964: allowd ==> allowed, allow, allows
data/t-coffee-13.41.0.28bdc39+dfsg/t_coffee_source/util_lib/reformat.c:2428: alignemnt ==> alignment
data/t-coffee-13.41.0.28bdc39+dfsg/t_coffee_source/util_lib/reformat.c:2922: struc ==> struct
data/t-coffee-13.41.0.28bdc39+dfsg/t_coffee_source/util_lib/reformat.c:4329: fo ==> of, for
data/t-coffee-13.41.0.28bdc39+dfsg/t_coffee_source/util_lib/reformat.c:4331: overlaping ==> overlapping
data/t-coffee-13.41.0.28bdc39+dfsg/t_coffee_source/util_lib/reformat.c:6318: alignmnet ==> alignment
data/t-coffee-13.41.0.28bdc39+dfsg/t_coffee_source/util_lib/reformat.c:8199: STRUC ==> STRUCT
data/t-coffee-13.41.0.28bdc39+dfsg/t_coffee_source/util_lib/reformat.c:8338: coresponds ==> corresponds
data/t-coffee-13.41.0.28bdc39+dfsg/t_coffee_source/util_lib/reformat.c:8702: PROCESING ==> PROCESSING
data/t-coffee-13.41.0.28bdc39+dfsg/t_coffee_source/util_lib/reformat.c:8748: Independant ==> Independent
data/t-coffee-13.41.0.28bdc39+dfsg/t_coffee_source/util_lib/reformat.c:9008: STRUC ==> STRUCT
data/t-coffee-13.41.0.28bdc39+dfsg/t_coffee_source/util_lib/reformat.c:9079: SER ==> SET
data/t-coffee-13.41.0.28bdc39+dfsg/t_coffee_source/util_lib/reformat.c:9508: Forbiden ==> Forbidden
data/t-coffee-13.41.0.28bdc39+dfsg/t_coffee_source/util_lib/reformat.c:9650: alignmnet ==> alignment
data/t-coffee-13.41.0.28bdc39+dfsg/t_coffee_source/util_lib/reformat.c:9651: whith ==> with
data/t-coffee-13.41.0.28bdc39+dfsg/t_coffee_source/util_lib/reformat.c:9668: Forbiden ==> Forbidden
data/t-coffee-13.41.0.28bdc39+dfsg/t_coffee_source/util_lib/reformat.c:9882: Forbiden ==> Forbidden
data/t-coffee-13.41.0.28bdc39+dfsg/t_coffee_source/util_lib/reformat.c:10315: forbiden ==> forbidden
data/t-coffee-13.41.0.28bdc39+dfsg/t_coffee_source/util_lib/reformat.c:10338: forbiden ==> forbidden
data/t-coffee-13.41.0.28bdc39+dfsg/t_coffee_source/util_lib/reformat.c:10393: forbiden ==> forbidden
data/t-coffee-13.41.0.28bdc39+dfsg/t_coffee_source/util_lib/reformat.c:10394: forbiden ==> forbidden
data/t-coffee-13.41.0.28bdc39+dfsg/t_coffee_source/util_lib/reformat.c:10476: forbiden ==> forbidden
data/t-coffee-13.41.0.28bdc39+dfsg/t_coffee_source/util_lib/reformat.c:10495: forbiden ==> forbidden
data/t-coffee-13.41.0.28bdc39+dfsg/t_coffee_source/util_lib/reformat.c:10497: forbiden ==> forbidden
data/t-coffee-13.41.0.28bdc39+dfsg/t_coffee_source/util_lib/reformat.c:10502: forbiden ==> forbidden
data/t-coffee-13.41.0.28bdc39+dfsg/t_coffee_source/util_lib/reformat.c:10510: forbiden ==> forbidden
data/t-coffee-13.41.0.28bdc39+dfsg/t_coffee_source/util_lib/reformat.c:10510: forbiden ==> forbidden
data/t-coffee-13.41.0.28bdc39+dfsg/t_coffee_source/util_lib/reformat.c:10511: forbiden ==> forbidden
data/t-coffee-13.41.0.28bdc39+dfsg/t_coffee_source/util_lib/reformat.c:10521: forbiden ==> forbidden
data/t-coffee-13.41.0.28bdc39+dfsg/t_coffee_source/util_lib/reformat.c:11024: acn ==> can, acne
data/t-coffee-13.41.0.28bdc39+dfsg/t_coffee_source/util_lib/reformat.c:11434: nin ==> inn, min, bin, nine
data/t-coffee-13.41.0.28bdc39+dfsg/t_coffee_source/util_lib/reformat.c:11473: ist ==> is, it, its, it's, sit, list
data/t-coffee-13.41.0.28bdc39+dfsg/t_coffee_source/util_lib/reformat.c:11479: ist ==> is, it, its, it's, sit, list
data/t-coffee-13.41.0.28bdc39+dfsg/t_coffee_source/util_lib/reformat.c:11485: ist ==> is, it, its, it's, sit, list
data/t-coffee-13.41.0.28bdc39+dfsg/t_coffee_source/util_lib/reformat.c:11611: appart ==> apart
data/t-coffee-13.41.0.28bdc39+dfsg/t_coffee_source/util_lib/reformat.c:11612: appart ==> apart
data/t-coffee-13.41.0.28bdc39+dfsg/t_coffee_source/util_lib/reformat.c:11613: appart ==> apart
data/t-coffee-13.41.0.28bdc39+dfsg/t_coffee_source/util_lib/reformat.c:11616: appart ==> apart
data/t-coffee-13.41.0.28bdc39+dfsg/t_coffee_source/util_lib/reformat.c:11617: appart ==> apart
data/t-coffee-13.41.0.28bdc39+dfsg/t_coffee_source/util_lib/reformat.c:11618: appart ==> apart
data/t-coffee-13.41.0.28bdc39+dfsg/t_coffee_source/util_lib/reformat.c:13005: Thresold ==> Threshold
data/t-coffee-13.41.0.28bdc39+dfsg/t_coffee_source/util_lib/reformat.c:13736: tre ==> tree
data/t-coffee-13.41.0.28bdc39+dfsg/t_coffee_source/util_lib/reformat.c:13770: tre ==> tree
data/t-coffee-13.41.0.28bdc39+dfsg/t_coffee_source/util_lib/reformat.c:13773: tre ==> tree
data/t-coffee-13.41.0.28bdc39+dfsg/t_coffee_source/util_lib/reformat.c:13779: tre ==> tree
data/t-coffee-13.41.0.28bdc39+dfsg/t_coffee_source/util_lib/reformat.c:13789: ouput ==> output
data/t-coffee-13.41.0.28bdc39+dfsg/t_coffee_source/util_lib/reformat.c:13809: tre ==> tree
data/t-coffee-13.41.0.28bdc39+dfsg/t_coffee_source/util_lib/reformat.c:13819: tre ==> tree
data/t-coffee-13.41.0.28bdc39+dfsg/t_coffee_source/util_lib/reformat.c:13823: tre ==> tree
data/t-coffee-13.41.0.28bdc39+dfsg/t_coffee_source/util_lib/reformat.c:13824: tre ==> tree
data/t-coffee-13.41.0.28bdc39+dfsg/t_coffee_source/util_lib/reformat.c:14840: begining ==> beginning
data/t-coffee-13.41.0.28bdc39+dfsg/t_coffee_source/util_lib/util_constraints_list.h:96: substracted ==> subtracted
data/t-coffee-13.41.0.28bdc39+dfsg/t_coffee_source/util_lib/util_constraints_list.h:143: folow ==> follow
data/t-coffee-13.41.0.28bdc39+dfsg/t_coffee_source/util_lib/util_constraints_list.h:144: neigborhood ==> neighborhood
data/t-coffee-13.41.0.28bdc39+dfsg/t_coffee_source/util_lib/util_constraints_list.h:354: forbiden ==> forbidden
data/t-coffee-13.41.0.28bdc39+dfsg/t_coffee_source/util_lib/util_constraints_list.h:355: forbiden ==> forbidden
data/t-coffee-13.41.0.28bdc39+dfsg/t_coffee_source/util_lib/util_constraints_list.h:361: extention ==> extension
data/t-coffee-13.41.0.28bdc39+dfsg/t_coffee_source/util_lib/util_constraints_list.h:365: extention ==> extension
data/t-coffee-13.41.0.28bdc39+dfsg/t_coffee_source/util_lib/util_constraints_list.h:367: Theshold ==> Threshold
data/t-coffee-13.41.0.28bdc39+dfsg/t_coffee_source/util_lib/util_constraints_list.h:376: traget ==> target
data/t-coffee-13.41.0.28bdc39+dfsg/t_coffee_source/util_lib/util_constraints_list.h:402: Struc ==> Struct
data/t-coffee-13.41.0.28bdc39+dfsg/t_coffee_source/util_lib/util_constraints_list.h:520: EXTENTION ==> EXTENSION
data/t-coffee-13.41.0.28bdc39+dfsg/t_coffee_source/util_lib/util_constraints_list.h:596: CONVERTION ==> CONVERSION
data/t-coffee-13.41.0.28bdc39+dfsg/t_coffee_source/util_lib/aln_compare.h:98: struc ==> struct
data/t-coffee-13.41.0.28bdc39+dfsg/t_coffee_source/util_lib/util.h:540: submited ==> submitted
data/t-coffee-13.41.0.28bdc39+dfsg/t_coffee_source/util_lib/util_job_handling.c:244: retun ==> return
data/t-coffee-13.41.0.28bdc39+dfsg/t_coffee_source/util_lib/util_job_handling.c:315: unkown ==> unknown
data/t-coffee-13.41.0.28bdc39+dfsg/t_coffee_source/util_lib/util_job_handling.c:330: unkown ==> unknown
data/t-coffee-13.41.0.28bdc39+dfsg/t_coffee_source/util_lib/util_job_handling.h:39: mangement ==> management
data/t-coffee-13.41.0.28bdc39+dfsg/t_coffee_source/util_lib/util_aln_analyze.c:1231: coloumns ==> columns
data/t-coffee-13.41.0.28bdc39+dfsg/t_coffee_source/util_lib/util_aln_analyze.c:1426: SPRED ==> SPREAD
data/t-coffee-13.41.0.28bdc39+dfsg/t_coffee_source/util_lib/util_aln_analyze.c:1542: SPRED ==> SPREAD
data/t-coffee-13.41.0.28bdc39+dfsg/t_coffee_source/util_lib/util_aln_analyze.c:1612: SPRED ==> SPREAD
data/t-coffee-13.41.0.28bdc39+dfsg/t_coffee_source/util_lib/util_aln_analyze.c:1686: SPRED ==> SPREAD
data/t-coffee-13.41.0.28bdc39+dfsg/t_coffee_source/util_lib/util_aln_analyze.c:1800: SPRED ==> SPREAD
data/t-coffee-13.41.0.28bdc39+dfsg/t_coffee_source/util_lib/hsearch.c:425: could't ==> couldn't
data/t-coffee-13.41.0.28bdc39+dfsg/t_coffee_source/util_lib/aln_compare.c:341: struc ==> struct
data/t-coffee-13.41.0.28bdc39+dfsg/t_coffee_source/util_lib/aln_compare.c:479: struc ==> struct
data/t-coffee-13.41.0.28bdc39+dfsg/t_coffee_source/util_lib/aln_compare.c:1274: STRUC ==> STRUCT
data/t-coffee-13.41.0.28bdc39+dfsg/t_coffee_source/util_lib/aln_compare.c:1326: struc ==> struct
data/t-coffee-13.41.0.28bdc39+dfsg/t_coffee_source/util_lib/aln_compare.c:1331: struc ==> struct
data/t-coffee-13.41.0.28bdc39+dfsg/t_coffee_source/util_lib/aln_compare.c:1344: struc ==> struct
data/t-coffee-13.41.0.28bdc39+dfsg/t_coffee_source/util_lib/aln_compare.c:1351: struc ==> struct
data/t-coffee-13.41.0.28bdc39+dfsg/t_coffee_source/util_lib/aln_compare.c:1482: Informations ==> Information
data/t-coffee-13.41.0.28bdc39+dfsg/t_coffee_source/util_lib/aln_compare.c:1505: Struc ==> Struct
data/t-coffee-13.41.0.28bdc39+dfsg/t_coffee_source/util_lib/aln_compare.c:1512: Struc ==> Struct
data/t-coffee-13.41.0.28bdc39+dfsg/t_coffee_source/util_lib/util.c:74: parms ==> params, prams
data/t-coffee-13.41.0.28bdc39+dfsg/t_coffee_source/util_lib/util.c:799: Occurence ==> Occurrence
data/t-coffee-13.41.0.28bdc39+dfsg/t_coffee_source/util_lib/util.c:870: ba ==> by, be
data/t-coffee-13.41.0.28bdc39+dfsg/t_coffee_source/util_lib/util.c:954: orginal ==> original
data/t-coffee-13.41.0.28bdc39+dfsg/t_coffee_source/util_lib/util.c:961: selcted ==> selected
data/t-coffee-13.41.0.28bdc39+dfsg/t_coffee_source/util_lib/util.c:963: orginal ==> original
data/t-coffee-13.41.0.28bdc39+dfsg/t_coffee_source/util_lib/util.c:972: ba ==> by, be
data/t-coffee-13.41.0.28bdc39+dfsg/t_coffee_source/util_lib/util.c:994: ba ==> by, be
data/t-coffee-13.41.0.28bdc39+dfsg/t_coffee_source/util_lib/util.c:1001: ba ==> by, be
data/t-coffee-13.41.0.28bdc39+dfsg/t_coffee_source/util_lib/util.c:1002: ba ==> by, be
data/t-coffee-13.41.0.28bdc39+dfsg/t_coffee_source/util_lib/util.c:3030: occurence ==> occurrence
data/t-coffee-13.41.0.28bdc39+dfsg/t_coffee_source/util_lib/util.c:3112: occurence ==> occurrence
data/t-coffee-13.41.0.28bdc39+dfsg/t_coffee_source/util_lib/util.c:3121: Occurences ==> Occurrences
data/t-coffee-13.41.0.28bdc39+dfsg/t_coffee_source/util_lib/util.c:4886: exceded ==> exceeded
data/t-coffee-13.41.0.28bdc39+dfsg/t_coffee_source/util_lib/util.c:5487: environement ==> environment
data/t-coffee-13.41.0.28bdc39+dfsg/t_coffee_source/util_lib/util.c:6116: environement ==> environment
data/t-coffee-13.41.0.28bdc39+dfsg/t_coffee_source/util_lib/util.c:6189: pakage ==> package
data/t-coffee-13.41.0.28bdc39+dfsg/t_coffee_source/util_lib/util.c:6205: usualy ==> usually
data/t-coffee-13.41.0.28bdc39+dfsg/t_coffee_source/util_lib/util.c:6489: environement ==> environment
data/t-coffee-13.41.0.28bdc39+dfsg/t_coffee_source/util_lib/util.c:6493: environement ==> environment
data/t-coffee-13.41.0.28bdc39+dfsg/t_coffee_source/util_lib/util.c:6565: ENVIRONEMENT ==> ENVIRONMENT
data/t-coffee-13.41.0.28bdc39+dfsg/t_coffee_source/util_lib/util.c:6611: tThe ==> the
data/t-coffee-13.41.0.28bdc39+dfsg/t_coffee_source/util_lib/util.c:7379: Rturns ==> Returns, turns
data/t-coffee-13.41.0.28bdc39+dfsg/t_coffee_source/util_lib/util.c:7552: argments ==> arguments
data/t-coffee-13.41.0.28bdc39+dfsg/t_coffee_source/util_lib/util.c:7560: varaible ==> variable
data/t-coffee-13.41.0.28bdc39+dfsg/t_coffee_source/util_lib/util.c:7920: begining ==> beginning
data/t-coffee-13.41.0.28bdc39+dfsg/t_coffee_source/util_lib/util.c:7949: occurence ==> occurrence
data/t-coffee-13.41.0.28bdc39+dfsg/t_coffee_source/util_lib/util.c:8067: begining ==> beginning
data/t-coffee-13.41.0.28bdc39+dfsg/t_coffee_source/util_lib/util.c:8074: begining ==> beginning
data/t-coffee-13.41.0.28bdc39+dfsg/t_coffee_source/util_lib/util.c:8079: begining ==> beginning
data/t-coffee-13.41.0.28bdc39+dfsg/t_coffee_source/util_lib/util.c:8092: begining ==> beginning
data/t-coffee-13.41.0.28bdc39+dfsg/t_coffee_source/util_lib/util.c:8093: begining ==> beginning
data/t-coffee-13.41.0.28bdc39+dfsg/t_coffee_source/util_lib/util.c:8138: cariage ==> carriage
data/t-coffee-13.41.0.28bdc39+dfsg/t_coffee_source/util_lib/util.c:8455: uptodate ==> up-to-date
data/t-coffee-13.41.0.28bdc39+dfsg/t_coffee_source/util_lib/util.c:8606: manualy ==> manually
data/t-coffee-13.41.0.28bdc39+dfsg/t_coffee_source/util_lib/util.c:9108: euclidian ==> euclidean
data/t-coffee-13.41.0.28bdc39+dfsg/t_coffee_source/util_lib/util.c:9177: elemets ==> elements
data/t-coffee-13.41.0.28bdc39+dfsg/t_coffee_source/util_lib/util.c:9235: elemets ==> elements
data/t-coffee-13.41.0.28bdc39+dfsg/t_coffee_source/util_lib/util.c:9358: parms ==> params, prams
data/t-coffee-13.41.0.28bdc39+dfsg/t_coffee_source/util_lib/util.c:9411: parms ==> params, prams
data/t-coffee-13.41.0.28bdc39+dfsg/t_coffee_source/util_lib/util.c:9417: parms ==> params, prams
data/t-coffee-13.41.0.28bdc39+dfsg/t_coffee_source/util_lib/util.c:9442: parms ==> params, prams
data/t-coffee-13.41.0.28bdc39+dfsg/t_coffee_source/util_lib/util.c:9446: parms ==> params, prams
data/t-coffee-13.41.0.28bdc39+dfsg/t_coffee_source/util_lib/util.c:9451: parms ==> params, prams
data/t-coffee-13.41.0.28bdc39+dfsg/t_coffee_source/util_lib/util.c:9467: parms ==> params, prams
data/t-coffee-13.41.0.28bdc39+dfsg/t_coffee_source/util_lib/util.c:9472: parms ==> params, prams
data/t-coffee-13.41.0.28bdc39+dfsg/t_coffee_source/util_lib/util.c:9477: parms ==> params, prams
data/t-coffee-13.41.0.28bdc39+dfsg/t_coffee_source/util_lib/util.c:9493: parms ==> params, prams
data/t-coffee-13.41.0.28bdc39+dfsg/t_coffee_source/util_lib/util.c:9498: parms ==> params, prams
data/t-coffee-13.41.0.28bdc39+dfsg/t_coffee_source/util_lib/util.c:9503: parms ==> params, prams
data/t-coffee-13.41.0.28bdc39+dfsg/t_coffee_source/util_lib/util.c:9521: parms ==> params, prams
data/t-coffee-13.41.0.28bdc39+dfsg/t_coffee_source/util_lib/util.c:9525: parms ==> params, prams
data/t-coffee-13.41.0.28bdc39+dfsg/t_coffee_source/util_lib/util.c:9529: parms ==> params, prams
data/t-coffee-13.41.0.28bdc39+dfsg/t_coffee_source/util_lib/util.c:9946: Intitialization ==> Initialization
data/t-coffee-13.41.0.28bdc39+dfsg/t_coffee_source/util_lib/util.c:10344: occurences ==> occurrences
data/t-coffee-13.41.0.28bdc39+dfsg/t_coffee_source/util_lib/util.c:10344: environement ==> environment
data/t-coffee-13.41.0.28bdc39+dfsg/t_coffee_source/util_lib/util.c:10415: environement ==> environment
data/t-coffee-13.41.0.28bdc39+dfsg/t_coffee_source/util_lib/util.c:10425: Environement ==> Environment
data/t-coffee-13.41.0.28bdc39+dfsg/t_coffee_source/util_lib/util_constraints_list.c:225: submited ==> submitted
data/t-coffee-13.41.0.28bdc39+dfsg/t_coffee_source/util_lib/util_constraints_list.c:279: submited ==> submitted
data/t-coffee-13.41.0.28bdc39+dfsg/t_coffee_source/util_lib/util_constraints_list.c:310: submited ==> submitted
data/t-coffee-13.41.0.28bdc39+dfsg/t_coffee_source/util_lib/util_constraints_list.c:311: submited ==> submitted
data/t-coffee-13.41.0.28bdc39+dfsg/t_coffee_source/util_lib/util_constraints_list.c:312: submited ==> submitted
data/t-coffee-13.41.0.28bdc39+dfsg/t_coffee_source/util_lib/util_constraints_list.c:334: submited ==> submitted
data/t-coffee-13.41.0.28bdc39+dfsg/t_coffee_source/util_lib/util_constraints_list.c:365: submited ==> submitted
data/t-coffee-13.41.0.28bdc39+dfsg/t_coffee_source/util_lib/util_constraints_list.c:400: submited ==> submitted
data/t-coffee-13.41.0.28bdc39+dfsg/t_coffee_source/util_lib/util_constraints_list.c:420: submited ==> submitted
data/t-coffee-13.41.0.28bdc39+dfsg/t_coffee_source/util_lib/util_constraints_list.c:422: submited ==> submitted
data/t-coffee-13.41.0.28bdc39+dfsg/t_coffee_source/util_lib/util_constraints_list.c:438: submited ==> submitted
data/t-coffee-13.41.0.28bdc39+dfsg/t_coffee_source/util_lib/util_constraints_list.c:1366: symetrical ==> symmetrical
data/t-coffee-13.41.0.28bdc39+dfsg/t_coffee_source/util_lib/util_constraints_list.c:1472: EXTENTION ==> EXTENSION
data/t-coffee-13.41.0.28bdc39+dfsg/t_coffee_source/util_lib/util_constraints_list.c:1480: occuring ==> occurring
data/t-coffee-13.41.0.28bdc39+dfsg/t_coffee_source/util_lib/util_constraints_list.c:1842: poistion ==> position
data/t-coffee-13.41.0.28bdc39+dfsg/t_coffee_source/util_lib/util_constraints_list.c:1871: poistion ==> position
data/t-coffee-13.41.0.28bdc39+dfsg/t_coffee_source/util_lib/util_constraints_list.c:3450: CONVERTION ==> CONVERSION
data/t-coffee-13.41.0.28bdc39+dfsg/t_coffee_source/util_lib/util_constraints_list.c:3564: alogrithm ==> algorithm
data/t-coffee-13.41.0.28bdc39+dfsg/t_coffee_source/util_lib/util_constraints_list.c:3570: ehen ==> when, hen, even, then
data/t-coffee-13.41.0.28bdc39+dfsg/t_coffee_source/util_lib/util_constraints_list.c:4317: FORBIDEN ==> FORBIDDEN
data/t-coffee-13.41.0.28bdc39+dfsg/t_coffee_source/util_lib/util_constraints_list.c:4476: FORBIDEN ==> FORBIDDEN
data/t-coffee-13.41.0.28bdc39+dfsg/t_coffee_source/util_lib/util_constraints_list.c:4490: FORBIDEN ==> FORBIDDEN
data/t-coffee-13.41.0.28bdc39+dfsg/t_coffee_source/util_lib/util_constraints_list.c:4494: FORBIDEN ==> FORBIDDEN
data/t-coffee-13.41.0.28bdc39+dfsg/t_coffee_source/util_lib/util_constraints_list.c:5175: euclidian ==> euclidean
data/t-coffee-13.41.0.28bdc39+dfsg/t_coffee_source/km_coffee/classes.h:37: stuct ==> struct
data/t-coffee-13.41.0.28bdc39+dfsg/t_coffee_source/km_coffee/classes.h:49: initalizes ==> initializes
data/t-coffee-13.41.0.28bdc39+dfsg/t_coffee_source/km_coffee/Stack.h:59: ot ==> to, of, or
data/t-coffee-13.41.0.28bdc39+dfsg/t_coffee_source/km_coffee/km_coffee.c:439: shrinked ==> shrunk
data/t-coffee-13.41.0.28bdc39+dfsg/t_coffee_source/io_lib/tree_util.c:552: commom ==> common
data/t-coffee-13.41.0.28bdc39+dfsg/t_coffee_source/io_lib/tree_util.c:688: outputing ==> outputting
data/t-coffee-13.41.0.28bdc39+dfsg/t_coffee_source/io_lib/tree_util.c:688: ouput ==> output
data/t-coffee-13.41.0.28bdc39+dfsg/t_coffee_source/io_lib/tree_util.c:828: STRAT ==> START, STRATA
data/t-coffee-13.41.0.28bdc39+dfsg/t_coffee_source/io_lib/tree_util.c:1119: commom ==> common
data/t-coffee-13.41.0.28bdc39+dfsg/t_coffee_source/io_lib/tree_util.c:4875: wher ==> where
data/t-coffee-13.41.0.28bdc39+dfsg/t_coffee_source/io_lib/tree_util.c:6977: occurences ==> occurrences
data/t-coffee-13.41.0.28bdc39+dfsg/t_coffee_source/io_lib/tree_util.c:7719: Bootsrap ==> Bootstrap
data/t-coffee-13.41.0.28bdc39+dfsg/t_coffee_source/io_lib/tree_util.c:7812: longuer ==> longer
data/t-coffee-13.41.0.28bdc39+dfsg/t_coffee_source/io_lib/tree_util.c:7837: referecne ==> reference
data/t-coffee-13.41.0.28bdc39+dfsg/t_coffee_source/io_lib/tree_util.c:7838: boostrap ==> bootstrap
data/t-coffee-13.41.0.28bdc39+dfsg/t_coffee_source/io_lib/tree_util.c:8226: Paralel ==> Parallel
data/t-coffee-13.41.0.28bdc39+dfsg/t_coffee_source/io_lib/tree_util.c:9667: chilren ==> children
data/t-coffee-13.41.0.28bdc39+dfsg/t_coffee_source/io_lib/tree_util.c:10195: chilren ==> children
data/t-coffee-13.41.0.28bdc39+dfsg/t_coffee_source/io_lib/io_structures.h:30: Seqeunce ==> Sequence
data/t-coffee-13.41.0.28bdc39+dfsg/t_coffee_source/io_lib/io_structures.h:55: struc ==> struct
data/t-coffee-13.41.0.28bdc39+dfsg/t_coffee_source/io_lib/io_structures.h:84: Lenght ==> Length
data/t-coffee-13.41.0.28bdc39+dfsg/t_coffee_source/io_lib/io_structures.h:233: aray ==> array
data/t-coffee-13.41.0.28bdc39+dfsg/t_coffee_source/io_lib/io_structures.h:287: wheather ==> weather, whether
data/t-coffee-13.41.0.28bdc39+dfsg/t_coffee_source/io_lib/pb_util_read_sequence.h:39: MSDOS ==> MS-DOS
data/t-coffee-13.41.0.28bdc39+dfsg/t_coffee_source/io_lib/pb_util_read_sequence.h:85: MSDOS ==> MS-DOS
data/t-coffee-13.41.0.28bdc39+dfsg/t_coffee_source/io_lib/io_func.c:1054: HEL ==> HELP, HELL, HEAL
data/t-coffee-13.41.0.28bdc39+dfsg/t_coffee_source/io_lib/io_func.c:1150: HEL ==> HELP, HELL, HEAL
data/t-coffee-13.41.0.28bdc39+dfsg/t_coffee_source/t_coffee_lib/t_coffee.c:192: follwowing ==> following
data/t-coffee-13.41.0.28bdc39+dfsg/t_coffee_source/t_coffee_lib/t_coffee.c:631: deprected ==> deprecated
data/t-coffee-13.41.0.28bdc39+dfsg/t_coffee_source/t_coffee_lib/t_coffee.c:777: environement ==> environment
data/t-coffee-13.41.0.28bdc39+dfsg/t_coffee_source/t_coffee_lib/t_coffee.c:807: corresponing ==> corresponding
data/t-coffee-13.41.0.28bdc39+dfsg/t_coffee_source/t_coffee_lib/t_coffee.c:909: expresso ==> espresso
data/t-coffee-13.41.0.28bdc39+dfsg/t_coffee_source/t_coffee_lib/t_coffee.c:1271: Extention ==> Extension
data/t-coffee-13.41.0.28bdc39+dfsg/t_coffee_source/t_coffee_lib/t_coffee.c:1867: tye ==> type, tie
data/t-coffee-13.41.0.28bdc39+dfsg/t_coffee_source/t_coffee_lib/t_coffee.c:2332: ND ==> AND, 2ND
data/t-coffee-13.41.0.28bdc39+dfsg/t_coffee_source/t_coffee_lib/t_coffee.c:2441: arbitratry ==> arbitrary
data/t-coffee-13.41.0.28bdc39+dfsg/t_coffee_source/t_coffee_lib/t_coffee.c:2441: dependant ==> dependent
data/t-coffee-13.41.0.28bdc39+dfsg/t_coffee_source/t_coffee_lib/t_coffee.c:3070: ND ==> AND, 2ND
data/t-coffee-13.41.0.28bdc39+dfsg/t_coffee_source/t_coffee_lib/t_coffee.c:3087: ND ==> AND, 2ND
data/t-coffee-13.41.0.28bdc39+dfsg/t_coffee_source/t_coffee_lib/t_coffee.c:3106: ND ==> AND, 2ND
data/t-coffee-13.41.0.28bdc39+dfsg/t_coffee_source/t_coffee_lib/t_coffee.c:3151: ND ==> AND, 2ND
data/t-coffee-13.41.0.28bdc39+dfsg/t_coffee_source/t_coffee_lib/t_coffee.c:3171: ND ==> AND, 2ND
data/t-coffee-13.41.0.28bdc39+dfsg/t_coffee_source/t_coffee_lib/t_coffee.c:3343: querries ==> queries
data/t-coffee-13.41.0.28bdc39+dfsg/t_coffee_source/t_coffee_lib/t_coffee.c:3494: existance ==> existence
data/t-coffee-13.41.0.28bdc39+dfsg/t_coffee_source/t_coffee_lib/t_coffee.c:3530: triming ==> trimming, timing
data/t-coffee-13.41.0.28bdc39+dfsg/t_coffee_source/t_coffee_lib/t_coffee.c:3718: environement ==> environment
data/t-coffee-13.41.0.28bdc39+dfsg/t_coffee_source/t_coffee_lib/t_coffee.c:4639: nNumber ==> number
data/t-coffee-13.41.0.28bdc39+dfsg/t_coffee_source/t_coffee_lib/t_coffee.c:4742: soruce ==> source, spruce
data/t-coffee-13.41.0.28bdc39+dfsg/t_coffee_source/t_coffee_lib/t_coffee.c:4768: Seqeunce ==> Sequence
data/t-coffee-13.41.0.28bdc39+dfsg/t_coffee_source/t_coffee_lib/t_coffee.c:4962: distibute ==> distribute
data/t-coffee-13.41.0.28bdc39+dfsg/t_coffee_source/t_coffee_lib/t_coffee.c:5213: Seqeunce ==> Sequence
data/t-coffee-13.41.0.28bdc39+dfsg/t_coffee_source/t_coffee_lib/t_coffee.c:5852: EXPRESSO ==> ESPRESSO
data/t-coffee-13.41.0.28bdc39+dfsg/t_coffee_source/t_coffee_lib/t_coffee.c:5852: EXPRESSO ==> ESPRESSO
data/t-coffee-13.41.0.28bdc39+dfsg/t_coffee_source/t_coffee_lib/t_coffee.c:5899: EXPRESSO ==> ESPRESSO
data/t-coffee-13.41.0.28bdc39+dfsg/t_coffee_source/t_coffee_lib/t_coffee.c:5900: EXPRESSO ==> ESPRESSO
data/t-coffee-13.41.0.28bdc39+dfsg/t_coffee_source/t_coffee_lib/t_coffee.c:5990: EXPRESSO ==> ESPRESSO
data/t-coffee-13.41.0.28bdc39+dfsg/t_coffee_source/t_coffee_lib/t_coffee.c:6160: environement ==> environment
data/t-coffee-13.41.0.28bdc39+dfsg/t_coffee_source/t_coffee_lib/t_coffee.c:6162: expresso ==> espresso
data/t-coffee-13.41.0.28bdc39+dfsg/t_coffee_source/t_coffee_lib/t_coffee.c:6258: tghe ==> the
data/t-coffee-13.41.0.28bdc39+dfsg/t_coffee_source/t_coffee_lib/t_coffee.c:6275: commected ==> connected
data/t-coffee-13.41.0.28bdc39+dfsg/t_coffee_source/t_coffee_lib/t_coffee.c:6984: triguered ==> triggered
data/t-coffee-13.41.0.28bdc39+dfsg/debian/changelog:223: contol ==> control
data/t-coffee-13.41.0.28bdc39+dfsg/debian/changelog:331: Upated ==> Updated
data/t-coffee-13.41.0.28bdc39+dfsg/debian/patches/clustalw2.patch:78: expresso ==> espresso
data/t-coffee-13.41.0.28bdc39+dfsg/debian/patches/clustalw2.patch:109: expresso ==> espresso
data/t-coffee-13.41.0.28bdc39+dfsg/debian/patches/mayhem.patch:17: environement ==> environment
data/t-coffee-13.41.0.28bdc39+dfsg/debian/patches/ncbi-blast++_has_dropped_pl_extension.patch:15: expresso ==> espresso
data/t-coffee-13.41.0.28bdc39+dfsg/debian/patches/ncbi-blast++_has_dropped_pl_extension.patch:24: expresso ==> espresso
data/t-coffee-13.41.0.28bdc39+dfsg/debian/patches/ncbi-blast++_has_dropped_pl_extension.patch:35: expresso ==> espresso
data/t-coffee-13.41.0.28bdc39+dfsg/debian/patches/ncbi-blast++_has_dropped_pl_extension.patch:44: expresso ==> espresso
data/t-coffee-13.41.0.28bdc39+dfsg/debian/patches/ncbi-blast++_has_dropped_pl_extension.patch:53: expresso ==> espresso
data/t-coffee-13.41.0.28bdc39+dfsg/debian/patches/ncbi-blast++_has_dropped_pl_extension.patch:60: expresso ==> espresso
data/t-coffee-13.41.0.28bdc39+dfsg/debian/patches/ncbi-blast++_has_dropped_pl_extension.patch:68: expresso ==> espresso
data/t-coffee-13.41.0.28bdc39+dfsg/debian/patches/ncbi-blast++_has_dropped_pl_extension.patch:76: expresso ==> espresso
data/t-coffee-13.41.0.28bdc39+dfsg/debian/patches/ncbi-blast++_has_dropped_pl_extension.patch:84: expresso ==> espresso
data/t-coffee-13.41.0.28bdc39+dfsg/debian/patches/ncbi-blast++_has_dropped_pl_extension.patch:94: expresso ==> espresso
data/t-coffee-13.41.0.28bdc39+dfsg/debian/patches/ncbi-blast++_has_dropped_pl_extension.patch:103: expresso ==> espresso
data/t-coffee-13.41.0.28bdc39+dfsg/debian/patches/ncbi-blast++_has_dropped_pl_extension.patch:109: expresso ==> espresso
data/t-coffee-13.41.0.28bdc39+dfsg/debian/patches/ncbi-blast++_has_dropped_pl_extension.patch:118: expresso ==> espresso
data/t-coffee-13.41.0.28bdc39+dfsg/debian/patches/ncbi-blast++_has_dropped_pl_extension.patch:126: expresso ==> espresso
data/t-coffee-13.41.0.28bdc39+dfsg/debian/patches/ncbi-blast++_has_dropped_pl_extension.patch:215: expresso ==> espresso
data/t-coffee-13.41.0.28bdc39+dfsg/debian/patches/ncbi-blast++_has_dropped_pl_extension.patch:242: expresso ==> espresso
data/t-coffee-13.41.0.28bdc39+dfsg/debian/patches/ncbi-blast++_has_dropped_pl_extension.patch:269: expresso ==> espresso
data/t-coffee-13.41.0.28bdc39+dfsg/debian/patches/ncbi-blast++_has_dropped_pl_extension.patch:270: expresso ==> espresso
data/t-coffee-13.41.0.28bdc39+dfsg/debian/patches/ncbi-blast++_has_dropped_pl_extension.patch:279: legac ==> legacy
data/t-coffee-13.41.0.28bdc39+dfsg/debian/patches/ncbi-blast++_has_dropped_pl_extension.patch:286: expresso ==> espresso
data/t-coffee-13.41.0.28bdc39+dfsg/.pc/probconsrna.patch/t_coffee_source/data_headers/programmes_define.h:191: REFORMATING ==> REFORMATTING
data/t-coffee-13.41.0.28bdc39+dfsg/.pc/bypass_legacy_blast.patch/example/tc_generic_method.pl:529: WARNIG ==> WARNING
data/t-coffee-13.41.0.28bdc39+dfsg/.pc/bypass_legacy_blast.patch/example/tc_generic_method.pl:865: struc ==> struct
data/t-coffee-13.41.0.28bdc39+dfsg/.pc/bypass_legacy_blast.patch/example/tc_generic_method.pl:873: struc ==> struct
data/t-coffee-13.41.0.28bdc39+dfsg/.pc/bypass_legacy_blast.patch/example/tc_generic_method.pl:874: struc ==> struct
data/t-coffee-13.41.0.28bdc39+dfsg/.pc/bypass_legacy_blast.patch/example/tc_generic_method.pl:875: struc ==> struct
data/t-coffee-13.41.0.28bdc39+dfsg/.pc/bypass_legacy_blast.patch/example/tc_generic_method.pl:876: struc ==> struct
data/t-coffee-13.41.0.28bdc39+dfsg/.pc/bypass_legacy_blast.patch/example/tc_generic_method.pl:877: struc ==> struct
data/t-coffee-13.41.0.28bdc39+dfsg/.pc/bypass_legacy_blast.patch/example/tc_generic_method.pl:888: struc ==> struct
data/t-coffee-13.41.0.28bdc39+dfsg/.pc/bypass_legacy_blast.patch/example/tc_generic_method.pl:1843: unkown ==> unknown
data/t-coffee-13.41.0.28bdc39+dfsg/.pc/set_proper_dir_permissions.patch/t_coffee_source/util_lib/util.c:74: parms ==> params, prams
data/t-coffee-13.41.0.28bdc39+dfsg/.pc/set_proper_dir_permissions.patch/t_coffee_source/util_lib/util.c:799: Occurence ==> Occurrence
data/t-coffee-13.41.0.28bdc39+dfsg/.pc/set_proper_dir_permissions.patch/t_coffee_source/util_lib/util.c:870: ba ==> by, be
data/t-coffee-13.41.0.28bdc39+dfsg/.pc/set_proper_dir_permissions.patch/t_coffee_source/util_lib/util.c:954: orginal ==> original
data/t-coffee-13.41.0.28bdc39+dfsg/.pc/set_proper_dir_permissions.patch/t_coffee_source/util_lib/util.c:961: selcted ==> selected
data/t-coffee-13.41.0.28bdc39+dfsg/.pc/set_proper_dir_permissions.patch/t_coffee_source/util_lib/util.c:963: orginal ==> original
data/t-coffee-13.41.0.28bdc39+dfsg/.pc/set_proper_dir_permissions.patch/t_coffee_source/util_lib/util.c:972: ba ==> by, be
data/t-coffee-13.41.0.28bdc39+dfsg/.pc/set_proper_dir_permissions.patch/t_coffee_source/util_lib/util.c:994: ba ==> by, be
data/t-coffee-13.41.0.28bdc39+dfsg/.pc/set_proper_dir_permissions.patch/t_coffee_source/util_lib/util.c:1001: ba ==> by, be
data/t-coffee-13.41.0.28bdc39+dfsg/.pc/set_proper_dir_permissions.patch/t_coffee_source/util_lib/util.c:1002: ba ==> by, be
data/t-coffee-13.41.0.28bdc39+dfsg/.pc/set_proper_dir_permissions.patch/t_coffee_source/util_lib/util.c:3030: occurence ==> occurrence
data/t-coffee-13.41.0.28bdc39+dfsg/.pc/set_proper_dir_permissions.patch/t_coffee_source/util_lib/util.c:3112: occurence ==> occurrence
data/t-coffee-13.41.0.28bdc39+dfsg/.pc/set_proper_dir_permissions.patch/t_coffee_source/util_lib/util.c:3121: Occurences ==> Occurrences
data/t-coffee-13.41.0.28bdc39+dfsg/.pc/set_proper_dir_permissions.patch/t_coffee_source/util_lib/util.c:4886: exceded ==> exceeded
data/t-coffee-13.41.0.28bdc39+dfsg/.pc/set_proper_dir_permissions.patch/t_coffee_source/util_lib/util.c:5271: environement ==> environment
data/t-coffee-13.41.0.28bdc39+dfsg/.pc/set_proper_dir_permissions.patch/t_coffee_source/util_lib/util.c:5486: environement ==> environment
data/t-coffee-13.41.0.28bdc39+dfsg/.pc/set_proper_dir_permissions.patch/t_coffee_source/util_lib/util.c:6115: environement ==> environment
data/t-coffee-13.41.0.28bdc39+dfsg/.pc/set_proper_dir_permissions.patch/t_coffee_source/util_lib/util.c:6188: pakage ==> package
data/t-coffee-13.41.0.28bdc39+dfsg/.pc/set_proper_dir_permissions.patch/t_coffee_source/util_lib/util.c:6204: usualy ==> usually
data/t-coffee-13.41.0.28bdc39+dfsg/.pc/set_proper_dir_permissions.patch/t_coffee_source/util_lib/util.c:6488: environement ==> environment
data/t-coffee-13.41.0.28bdc39+dfsg/.pc/set_proper_dir_permissions.patch/t_coffee_source/util_lib/util.c:6492: environement ==> environment
data/t-coffee-13.41.0.28bdc39+dfsg/.pc/set_proper_dir_permissions.patch/t_coffee_source/util_lib/util.c:6564: ENVIRONEMENT ==> ENVIRONMENT
data/t-coffee-13.41.0.28bdc39+dfsg/.pc/set_proper_dir_permissions.patch/t_coffee_source/util_lib/util.c:6610: tThe ==> the
data/t-coffee-13.41.0.28bdc39+dfsg/.pc/set_proper_dir_permissions.patch/t_coffee_source/util_lib/util.c:7378: Rturns ==> Returns, turns
data/t-coffee-13.41.0.28bdc39+dfsg/.pc/set_proper_dir_permissions.patch/t_coffee_source/util_lib/util.c:7551: argments ==> arguments
data/t-coffee-13.41.0.28bdc39+dfsg/.pc/set_proper_dir_permissions.patch/t_coffee_source/util_lib/util.c:7559: varaible ==> variable
data/t-coffee-13.41.0.28bdc39+dfsg/.pc/set_proper_dir_permissions.patch/t_coffee_source/util_lib/util.c:7919: begining ==> beginning
data/t-coffee-13.41.0.28bdc39+dfsg/.pc/set_proper_dir_permissions.patch/t_coffee_source/util_lib/util.c:7948: occurence ==> occurrence
data/t-coffee-13.41.0.28bdc39+dfsg/.pc/set_proper_dir_permissions.patch/t_coffee_source/util_lib/util.c:8066: begining ==> beginning
data/t-coffee-13.41.0.28bdc39+dfsg/.pc/set_proper_dir_permissions.patch/t_coffee_source/util_lib/util.c:8073: begining ==> beginning
data/t-coffee-13.41.0.28bdc39+dfsg/.pc/set_proper_dir_permissions.patch/t_coffee_source/util_lib/util.c:8078: begining ==> beginning
data/t-coffee-13.41.0.28bdc39+dfsg/.pc/set_proper_dir_permissions.patch/t_coffee_source/util_lib/util.c:8091: begining ==> beginning
data/t-coffee-13.41.0.28bdc39+dfsg/.pc/set_proper_dir_permissions.patch/t_coffee_source/util_lib/util.c:8092: begining ==> beginning
data/t-coffee-13.41.0.28bdc39+dfsg/.pc/set_proper_dir_permissions.patch/t_coffee_source/util_lib/util.c:8137: cariage ==> carriage
data/t-coffee-13.41.0.28bdc39+dfsg/.pc/set_proper_dir_permissions.patch/t_coffee_source/util_lib/util.c:8454: uptodate ==> up-to-date
data/t-coffee-13.41.0.28bdc39+dfsg/.pc/set_proper_dir_permissions.patch/t_coffee_source/util_lib/util.c:8605: manualy ==> manually
data/t-coffee-13.41.0.28bdc39+dfsg/.pc/set_proper_dir_permissions.patch/t_coffee_source/util_lib/util.c:9098: euclidian ==> euclidean
data/t-coffee-13.41.0.28bdc39+dfsg/.pc/set_proper_dir_permissions.patch/t_coffee_source/util_lib/util.c:9167: elemets ==> elements
data/t-coffee-13.41.0.28bdc39+dfsg/.pc/set_proper_dir_permissions.patch/t_coffee_source/util_lib/util.c:9225: elemets ==> elements
data/t-coffee-13.41.0.28bdc39+dfsg/.pc/set_proper_dir_permissions.patch/t_coffee_source/util_lib/util.c:9348: parms ==> params, prams
data/t-coffee-13.41.0.28bdc39+dfsg/.pc/set_proper_dir_permissions.patch/t_coffee_source/util_lib/util.c:9401: parms ==> params, prams
data/t-coffee-13.41.0.28bdc39+dfsg/.pc/set_proper_dir_permissions.patch/t_coffee_source/util_lib/util.c:9407: parms ==> params, prams
data/t-coffee-13.41.0.28bdc39+dfsg/.pc/set_proper_dir_permissions.patch/t_coffee_source/util_lib/util.c:9432: parms ==> params, prams
data/t-coffee-13.41.0.28bdc39+dfsg/.pc/set_proper_dir_permissions.patch/t_coffee_source/util_lib/util.c:9436: parms ==> params, prams
data/t-coffee-13.41.0.28bdc39+dfsg/.pc/set_proper_dir_permissions.patch/t_coffee_source/util_lib/util.c:9441: parms ==> params, prams
data/t-coffee-13.41.0.28bdc39+dfsg/.pc/set_proper_dir_permissions.patch/t_coffee_source/util_lib/util.c:9457: parms ==> params, prams
data/t-coffee-13.41.0.28bdc39+dfsg/.pc/set_proper_dir_permissions.patch/t_coffee_source/util_lib/util.c:9462: parms ==> params, prams
data/t-coffee-13.41.0.28bdc39+dfsg/.pc/set_proper_dir_permissions.patch/t_coffee_source/util_lib/util.c:9467: parms ==> params, prams
data/t-coffee-13.41.0.28bdc39+dfsg/.pc/set_proper_dir_permissions.patch/t_coffee_source/util_lib/util.c:9483: parms ==> params, prams
data/t-coffee-13.41.0.28bdc39+dfsg/.pc/set_proper_dir_permissions.patch/t_coffee_source/util_lib/util.c:9488: parms ==> params, prams
data/t-coffee-13.41.0.28bdc39+dfsg/.pc/set_proper_dir_permissions.patch/t_coffee_source/util_lib/util.c:9493: parms ==> params, prams
data/t-coffee-13.41.0.28bdc39+dfsg/.pc/set_proper_dir_permissions.patch/t_coffee_source/util_lib/util.c:9511: parms ==> params, prams
data/t-coffee-13.41.0.28bdc39+dfsg/.pc/set_proper_dir_permissions.patch/t_coffee_source/util_lib/util.c:9515: parms ==> params, prams
data/t-coffee-13.41.0.28bdc39+dfsg/.pc/set_proper_dir_permissions.patch/t_coffee_source/util_lib/util.c:9519: parms ==> params, prams
data/t-coffee-13.41.0.28bdc39+dfsg/.pc/set_proper_dir_permissions.patch/t_coffee_source/util_lib/util.c:9936: Intitialization ==> Initialization
data/t-coffee-13.41.0.28bdc39+dfsg/.pc/set_proper_dir_permissions.patch/t_coffee_source/util_lib/util.c:10334: occurences ==> occurrences
data/t-coffee-13.41.0.28bdc39+dfsg/.pc/set_proper_dir_permissions.patch/t_coffee_source/util_lib/util.c:10334: environement ==> environment
data/t-coffee-13.41.0.28bdc39+dfsg/.pc/set_proper_dir_permissions.patch/t_coffee_source/util_lib/util.c:10405: environement ==> environment
data/t-coffee-13.41.0.28bdc39+dfsg/.pc/set_proper_dir_permissions.patch/t_coffee_source/util_lib/util.c:10415: Environement ==> Environment
data/t-coffee-13.41.0.28bdc39+dfsg/.pc/mayhem.patch/t_coffee_source/util_lib/util.c:74: parms ==> params, prams
data/t-coffee-13.41.0.28bdc39+dfsg/.pc/mayhem.patch/t_coffee_source/util_lib/util.c:799: Occurence ==> Occurrence
data/t-coffee-13.41.0.28bdc39+dfsg/.pc/mayhem.patch/t_coffee_source/util_lib/util.c:870: ba ==> by, be
data/t-coffee-13.41.0.28bdc39+dfsg/.pc/mayhem.patch/t_coffee_source/util_lib/util.c:954: orginal ==> original
data/t-coffee-13.41.0.28bdc39+dfsg/.pc/mayhem.patch/t_coffee_source/util_lib/util.c:961: selcted ==> selected
data/t-coffee-13.41.0.28bdc39+dfsg/.pc/mayhem.patch/t_coffee_source/util_lib/util.c:963: orginal ==> original
data/t-coffee-13.41.0.28bdc39+dfsg/.pc/mayhem.patch/t_coffee_source/util_lib/util.c:972: ba ==> by, be
data/t-coffee-13.41.0.28bdc39+dfsg/.pc/mayhem.patch/t_coffee_source/util_lib/util.c:994: ba ==> by, be
data/t-coffee-13.41.0.28bdc39+dfsg/.pc/mayhem.patch/t_coffee_source/util_lib/util.c:1001: ba ==> by, be
data/t-coffee-13.41.0.28bdc39+dfsg/.pc/mayhem.patch/t_coffee_source/util_lib/util.c:1002: ba ==> by, be
data/t-coffee-13.41.0.28bdc39+dfsg/.pc/mayhem.patch/t_coffee_source/util_lib/util.c:3030: occurence ==> occurrence
data/t-coffee-13.41.0.28bdc39+dfsg/.pc/mayhem.patch/t_coffee_source/util_lib/util.c:3112: occurence ==> occurrence
data/t-coffee-13.41.0.28bdc39+dfsg/.pc/mayhem.patch/t_coffee_source/util_lib/util.c:3121: Occurences ==> Occurrences
data/t-coffee-13.41.0.28bdc39+dfsg/.pc/mayhem.patch/t_coffee_source/util_lib/util.c:4886: exceded ==> exceeded
data/t-coffee-13.41.0.28bdc39+dfsg/.pc/mayhem.patch/t_coffee_source/util_lib/util.c:5271: environement ==> environment
data/t-coffee-13.41.0.28bdc39+dfsg/.pc/mayhem.patch/t_coffee_source/util_lib/util.c:5486: environement ==> environment
data/t-coffee-13.41.0.28bdc39+dfsg/.pc/mayhem.patch/t_coffee_source/util_lib/util.c:6115: environement ==> environment
data/t-coffee-13.41.0.28bdc39+dfsg/.pc/mayhem.patch/t_coffee_source/util_lib/util.c:6188: pakage ==> package
data/t-coffee-13.41.0.28bdc39+dfsg/.pc/mayhem.patch/t_coffee_source/util_lib/util.c:6204: usualy ==> usually
data/t-coffee-13.41.0.28bdc39+dfsg/.pc/mayhem.patch/t_coffee_source/util_lib/util.c:6488: environement ==> environment
data/t-coffee-13.41.0.28bdc39+dfsg/.pc/mayhem.patch/t_coffee_source/util_lib/util.c:6492: environement ==> environment
data/t-coffee-13.41.0.28bdc39+dfsg/.pc/mayhem.patch/t_coffee_source/util_lib/util.c:6564: ENVIRONEMENT ==> ENVIRONMENT
data/t-coffee-13.41.0.28bdc39+dfsg/.pc/mayhem.patch/t_coffee_source/util_lib/util.c:6610: tThe ==> the
data/t-coffee-13.41.0.28bdc39+dfsg/.pc/mayhem.patch/t_coffee_source/util_lib/util.c:7378: Rturns ==> Returns, turns
data/t-coffee-13.41.0.28bdc39+dfsg/.pc/mayhem.patch/t_coffee_source/util_lib/util.c:7551: argments ==> arguments
data/t-coffee-13.41.0.28bdc39+dfsg/.pc/mayhem.patch/t_coffee_source/util_lib/util.c:7559: varaible ==> variable
data/t-coffee-13.41.0.28bdc39+dfsg/.pc/mayhem.patch/t_coffee_source/util_lib/util.c:7919: begining ==> beginning
data/t-coffee-13.41.0.28bdc39+dfsg/.pc/mayhem.patch/t_coffee_source/util_lib/util.c:7948: occurence ==> occurrence
data/t-coffee-13.41.0.28bdc39+dfsg/.pc/mayhem.patch/t_coffee_source/util_lib/util.c:8066: begining ==> beginning
data/t-coffee-13.41.0.28bdc39+dfsg/.pc/mayhem.patch/t_coffee_source/util_lib/util.c:8073: begining ==> beginning
data/t-coffee-13.41.0.28bdc39+dfsg/.pc/mayhem.patch/t_coffee_source/util_lib/util.c:8078: begining ==> beginning
data/t-coffee-13.41.0.28bdc39+dfsg/.pc/mayhem.patch/t_coffee_source/util_lib/util.c:8091: begining ==> beginning
data/t-coffee-13.41.0.28bdc39+dfsg/.pc/mayhem.patch/t_coffee_source/util_lib/util.c:8092: begining ==> beginning
data/t-coffee-13.41.0.28bdc39+dfsg/.pc/mayhem.patch/t_coffee_source/util_lib/util.c:8137: cariage ==> carriage
data/t-coffee-13.41.0.28bdc39+dfsg/.pc/mayhem.patch/t_coffee_source/util_lib/util.c:8454: uptodate ==> up-to-date
data/t-coffee-13.41.0.28bdc39+dfsg/.pc/mayhem.patch/t_coffee_source/util_lib/util.c:8605: manualy ==> manually
data/t-coffee-13.41.0.28bdc39+dfsg/.pc/mayhem.patch/t_coffee_source/util_lib/util.c:9103: euclidian ==> euclidean
data/t-coffee-13.41.0.28bdc39+dfsg/.pc/mayhem.patch/t_coffee_source/util_lib/util.c:9172: elemets ==> elements
data/t-coffee-13.41.0.28bdc39+dfsg/.pc/mayhem.patch/t_coffee_source/util_lib/util.c:9230: elemets ==> elements
data/t-coffee-13.41.0.28bdc39+dfsg/.pc/mayhem.patch/t_coffee_source/util_lib/util.c:9353: parms ==> params, prams
data/t-coffee-13.41.0.28bdc39+dfsg/.pc/mayhem.patch/t_coffee_source/util_lib/util.c:9406: parms ==> params, prams
data/t-coffee-13.41.0.28bdc39+dfsg/.pc/mayhem.patch/t_coffee_source/util_lib/util.c:9412: parms ==> params, prams
data/t-coffee-13.41.0.28bdc39+dfsg/.pc/mayhem.patch/t_coffee_source/util_lib/util.c:9437: parms ==> params, prams
data/t-coffee-13.41.0.28bdc39+dfsg/.pc/mayhem.patch/t_coffee_source/util_lib/util.c:9441: parms ==> params, prams
data/t-coffee-13.41.0.28bdc39+dfsg/.pc/mayhem.patch/t_coffee_source/util_lib/util.c:9446: parms ==> params, prams
data/t-coffee-13.41.0.28bdc39+dfsg/.pc/mayhem.patch/t_coffee_source/util_lib/util.c:9462: parms ==> params, prams
data/t-coffee-13.41.0.28bdc39+dfsg/.pc/mayhem.patch/t_coffee_source/util_lib/util.c:9467: parms ==> params, prams
data/t-coffee-13.41.0.28bdc39+dfsg/.pc/mayhem.patch/t_coffee_source/util_lib/util.c:9472: parms ==> params, prams
data/t-coffee-13.41.0.28bdc39+dfsg/.pc/mayhem.patch/t_coffee_source/util_lib/util.c:9488: parms ==> params, prams
data/t-coffee-13.41.0.28bdc39+dfsg/.pc/mayhem.patch/t_coffee_source/util_lib/util.c:9493: parms ==> params, prams
data/t-coffee-13.41.0.28bdc39+dfsg/.pc/mayhem.patch/t_coffee_source/util_lib/util.c:9498: parms ==> params, prams
data/t-coffee-13.41.0.28bdc39+dfsg/.pc/mayhem.patch/t_coffee_source/util_lib/util.c:9516: parms ==> params, prams
data/t-coffee-13.41.0.28bdc39+dfsg/.pc/mayhem.patch/t_coffee_source/util_lib/util.c:9520: parms ==> params, prams
data/t-coffee-13.41.0.28bdc39+dfsg/.pc/mayhem.patch/t_coffee_source/util_lib/util.c:9524: parms ==> params, prams
data/t-coffee-13.41.0.28bdc39+dfsg/.pc/mayhem.patch/t_coffee_source/util_lib/util.c:9941: Intitialization ==> Initialization
data/t-coffee-13.41.0.28bdc39+dfsg/.pc/mayhem.patch/t_coffee_source/util_lib/util.c:10339: occurences ==> occurrences
data/t-coffee-13.41.0.28bdc39+dfsg/.pc/mayhem.patch/t_coffee_source/util_lib/util.c:10339: environement ==> environment
data/t-coffee-13.41.0.28bdc39+dfsg/.pc/mayhem.patch/t_coffee_source/util_lib/util.c:10410: environement ==> environment
data/t-coffee-13.41.0.28bdc39+dfsg/.pc/mayhem.patch/t_coffee_source/util_lib/util.c:10420: Environement ==> Environment
data/t-coffee-13.41.0.28bdc39+dfsg/.pc/clustalw2.patch/install:75: expresso ==> espresso
data/t-coffee-13.41.0.28bdc39+dfsg/.pc/clustalw2.patch/install:141: defualt ==> default
data/t-coffee-13.41.0.28bdc39+dfsg/.pc/clustalw2.patch/install:164: enviroment ==> environment
data/t-coffee-13.41.0.28bdc39+dfsg/.pc/clustalw2.patch/install:165: enviroment ==> environment
data/t-coffee-13.41.0.28bdc39+dfsg/.pc/clustalw2.patch/install:207: environement ==> environment
data/t-coffee-13.41.0.28bdc39+dfsg/.pc/clustalw2.patch/install:378: succesful ==> successful
data/t-coffee-13.41.0.28bdc39+dfsg/.pc/clustalw2.patch/install:383: succesful ==> successful
data/t-coffee-13.41.0.28bdc39+dfsg/.pc/clustalw2.patch/install:387: succesful ==> successful
data/t-coffee-13.41.0.28bdc39+dfsg/.pc/clustalw2.patch/install:616: unsuccesful ==> unsuccessful
data/t-coffee-13.41.0.28bdc39+dfsg/.pc/clustalw2.patch/install:620: succesful ==> successful
data/t-coffee-13.41.0.28bdc39+dfsg/.pc/clustalw2.patch/install:626: sytem ==> system
data/t-coffee-13.41.0.28bdc39+dfsg/.pc/clustalw2.patch/install:962: mantained ==> maintained
data/t-coffee-13.41.0.28bdc39+dfsg/.pc/clustalw2.patch/install:1143: unx ==> unix
data/t-coffee-13.41.0.28bdc39+dfsg/.pc/clustalw2.patch/install:1504: environement ==> environment
data/t-coffee-13.41.0.28bdc39+dfsg/.pc/clustalw2.patch/install:1646: expresso ==> espresso
data/t-coffee-13.41.0.28bdc39+dfsg/.pc/clustalw2.patch/install:1662: expresso ==> espresso
data/t-coffee-13.41.0.28bdc39+dfsg/.pc/clustalw2.patch/install:1829: expresso ==> espresso
data/t-coffee-13.41.0.28bdc39+dfsg/.pc/clustalw2.patch/install:1839: expresso ==> espresso
data/t-coffee-13.41.0.28bdc39+dfsg/.pc/clustalw2.patch/install:1847: expresso ==> espresso
data/t-coffee-13.41.0.28bdc39+dfsg/.pc/clustalw2.patch/install:1856: expresso ==> espresso
data/t-coffee-13.41.0.28bdc39+dfsg/.pc/clustalw2.patch/install:1864: expresso ==> espresso
data/t-coffee-13.41.0.28bdc39+dfsg/.pc/clustalw2.patch/install:1872: expresso ==> espresso
data/t-coffee-13.41.0.28bdc39+dfsg/.pc/clustalw2.patch/install:1881: expresso ==> espresso
data/t-coffee-13.41.0.28bdc39+dfsg/.pc/clustalw2.patch/install:1942: expresso ==> espresso
data/t-coffee-13.41.0.28bdc39+dfsg/.pc/clustalw2.patch/install:1951: expresso ==> espresso
data/t-coffee-13.41.0.28bdc39+dfsg/.pc/clustalw2.patch/install:1959: expresso ==> espresso
data/t-coffee-13.41.0.28bdc39+dfsg/.pc/clustalw2.patch/install:1967: expresso ==> espresso
data/t-coffee-13.41.0.28bdc39+dfsg/.pc/clustalw2.patch/install:1982: expresso ==> espresso
data/t-coffee-13.41.0.28bdc39+dfsg/.pc/clustalw2.patch/install:2011: expresso ==> espresso
data/t-coffee-13.41.0.28bdc39+dfsg/.pc/clustalw2.patch/install:2011: expresso ==> espresso
data/t-coffee-13.41.0.28bdc39+dfsg/.pc/clustalw2.patch/install:2062: expresso ==> espresso
data/t-coffee-13.41.0.28bdc39+dfsg/.pc/clustalw2.patch/tclinkdb.txt:9: expresso ==> espresso
data/t-coffee-13.41.0.28bdc39+dfsg/.pc/clustalw2.patch/tclinkdb.txt:27: expresso ==> espresso
data/t-coffee-13.41.0.28bdc39+dfsg/.pc/clustalw2.patch/tclinkdb.txt:219: expresso ==> espresso
data/t-coffee-13.41.0.28bdc39+dfsg/.pc/clustalw2.patch/tclinkdb.txt:230: expresso ==> espresso
data/t-coffee-13.41.0.28bdc39+dfsg/.pc/clustalw2.patch/tclinkdb.txt:240: expresso ==> espresso
data/t-coffee-13.41.0.28bdc39+dfsg/.pc/clustalw2.patch/tclinkdb.txt:250: expresso ==> espresso
data/t-coffee-13.41.0.28bdc39+dfsg/.pc/clustalw2.patch/tclinkdb.txt:259: expresso ==> espresso
data/t-coffee-13.41.0.28bdc39+dfsg/.pc/clustalw2.patch/tclinkdb.txt:269: expresso ==> espresso
data/t-coffee-13.41.0.28bdc39+dfsg/.pc/clustalw2.patch/tclinkdb.txt:279: expresso ==> espresso
data/t-coffee-13.41.0.28bdc39+dfsg/.pc/clustalw2.patch/tclinkdb.txt:347: expresso ==> espresso
data/t-coffee-13.41.0.28bdc39+dfsg/.pc/clustalw2.patch/tclinkdb.txt:357: expresso ==> espresso
data/t-coffee-13.41.0.28bdc39+dfsg/.pc/clustalw2.patch/tclinkdb.txt:366: expresso ==> espresso
data/t-coffee-13.41.0.28bdc39+dfsg/.pc/clustalw2.patch/tclinkdb.txt:375: expresso ==> espresso
data/t-coffee-13.41.0.28bdc39+dfsg/.pc/clustalw2.patch/tclinkdb.txt:392: expresso ==> espresso
data/t-coffee-13.41.0.28bdc39+dfsg/.pc/clustalw2.patch/tclinkdb.txt:427: expresso ==> espresso
data/t-coffee-13.41.0.28bdc39+dfsg/.pc/clustalw2.patch/tclinkdb.txt:427: expresso ==> espresso
data/t-coffee-13.41.0.28bdc39+dfsg/.pc/clustalw2.patch/t_coffee_source/programmes_define.h:47: expresso ==> espresso
data/t-coffee-13.41.0.28bdc39+dfsg/.pc/clustalw2.patch/t_coffee_source/programmes_define.h:63: expresso ==> espresso
data/t-coffee-13.41.0.28bdc39+dfsg/.pc/clustalw2.patch/t_coffee_source/programmes_define.h:230: expresso ==> espresso
data/t-coffee-13.41.0.28bdc39+dfsg/.pc/clustalw2.patch/t_coffee_source/programmes_define.h:240: expresso ==> espresso
data/t-coffee-13.41.0.28bdc39+dfsg/.pc/clustalw2.patch/t_coffee_source/programmes_define.h:248: expresso ==> espresso
data/t-coffee-13.41.0.28bdc39+dfsg/.pc/clustalw2.patch/t_coffee_source/programmes_define.h:257: expresso ==> espresso
data/t-coffee-13.41.0.28bdc39+dfsg/.pc/clustalw2.patch/t_coffee_source/programmes_define.h:265: expresso ==> espresso
data/t-coffee-13.41.0.28bdc39+dfsg/.pc/clustalw2.patch/t_coffee_source/programmes_define.h:273: expresso ==> espresso
data/t-coffee-13.41.0.28bdc39+dfsg/.pc/clustalw2.patch/t_coffee_source/programmes_define.h:282: expresso ==> espresso
data/t-coffee-13.41.0.28bdc39+dfsg/.pc/clustalw2.patch/t_coffee_source/programmes_define.h:343: expresso ==> espresso
data/t-coffee-13.41.0.28bdc39+dfsg/.pc/clustalw2.patch/t_coffee_source/programmes_define.h:352: expresso ==> espresso
data/t-coffee-13.41.0.28bdc39+dfsg/.pc/clustalw2.patch/t_coffee_source/programmes_define.h:360: expresso ==> espresso
data/t-coffee-13.41.0.28bdc39+dfsg/.pc/clustalw2.patch/t_coffee_source/programmes_define.h:368: expresso ==> espresso
data/t-coffee-13.41.0.28bdc39+dfsg/.pc/clustalw2.patch/t_coffee_source/programmes_define.h:383: expresso ==> espresso
data/t-coffee-13.41.0.28bdc39+dfsg/.pc/clustalw2.patch/t_coffee_source/programmes_define.h:420: REFORMATING ==> REFORMATTING
data/t-coffee-13.41.0.28bdc39+dfsg/.pc/clustalw2.patch/t_coffee_source/util_lib/util_constraints_list.c:225: submited ==> submitted
data/t-coffee-13.41.0.28bdc39+dfsg/.pc/clustalw2.patch/t_coffee_source/util_lib/util_constraints_list.c:279: submited ==> submitted
data/t-coffee-13.41.0.28bdc39+dfsg/.pc/clustalw2.patch/t_coffee_source/util_lib/util_constraints_list.c:310: submited ==> submitted
data/t-coffee-13.41.0.28bdc39+dfsg/.pc/clustalw2.patch/t_coffee_source/util_lib/util_constraints_list.c:311: submited ==> submitted
data/t-coffee-13.41.0.28bdc39+dfsg/.pc/clustalw2.patch/t_coffee_source/util_lib/util_constraints_list.c:312: submited ==> submitted
data/t-coffee-13.41.0.28bdc39+dfsg/.pc/clustalw2.patch/t_coffee_source/util_lib/util_constraints_list.c:334: submited ==> submitted
data/t-coffee-13.41.0.28bdc39+dfsg/.pc/clustalw2.patch/t_coffee_source/util_lib/util_constraints_list.c:365: submited ==> submitted
data/t-coffee-13.41.0.28bdc39+dfsg/.pc/clustalw2.patch/t_coffee_source/util_lib/util_constraints_list.c:400: submited ==> submitted
data/t-coffee-13.41.0.28bdc39+dfsg/.pc/clustalw2.patch/t_coffee_source/util_lib/util_constraints_list.c:420: submited ==> submitted
data/t-coffee-13.41.0.28bdc39+dfsg/.pc/clustalw2.patch/t_coffee_source/util_lib/util_constraints_list.c:422: submited ==> submitted
data/t-coffee-13.41.0.28bdc39+dfsg/.pc/clustalw2.patch/t_coffee_source/util_lib/util_constraints_list.c:438: submited ==> submitted
data/t-coffee-13.41.0.28bdc39+dfsg/.pc/clustalw2.patch/t_coffee_source/util_lib/util_constraints_list.c:1366: symetrical ==> symmetrical
data/t-coffee-13.41.0.28bdc39+dfsg/.pc/clustalw2.patch/t_coffee_source/util_lib/util_constraints_list.c:1472: EXTENTION ==> EXTENSION
data/t-coffee-13.41.0.28bdc39+dfsg/.pc/clustalw2.patch/t_coffee_source/util_lib/util_constraints_list.c:1480: occuring ==> occurring
data/t-coffee-13.41.0.28bdc39+dfsg/.pc/clustalw2.patch/t_coffee_source/util_lib/util_constraints_list.c:1842: poistion ==> position
data/t-coffee-13.41.0.28bdc39+dfsg/.pc/clustalw2.patch/t_coffee_source/util_lib/util_constraints_list.c:1871: poistion ==> position
data/t-coffee-13.41.0.28bdc39+dfsg/.pc/clustalw2.patch/t_coffee_source/util_lib/util_constraints_list.c:3450: CONVERTION ==> CONVERSION
data/t-coffee-13.41.0.28bdc39+dfsg/.pc/clustalw2.patch/t_coffee_source/util_lib/util_constraints_list.c:3564: alogrithm ==> algorithm
data/t-coffee-13.41.0.28bdc39+dfsg/.pc/clustalw2.patch/t_coffee_source/util_lib/util_constraints_list.c:3570: ehen ==> when, hen, even, then
data/t-coffee-13.41.0.28bdc39+dfsg/.pc/clustalw2.patch/t_coffee_source/util_lib/util_constraints_list.c:4317: FORBIDEN ==> FORBIDDEN
data/t-coffee-13.41.0.28bdc39+dfsg/.pc/clustalw2.patch/t_coffee_source/util_lib/util_constraints_list.c:4476: FORBIDEN ==> FORBIDDEN
data/t-coffee-13.41.0.28bdc39+dfsg/.pc/clustalw2.patch/t_coffee_source/util_lib/util_constraints_list.c:4490: FORBIDEN ==> FORBIDDEN
data/t-coffee-13.41.0.28bdc39+dfsg/.pc/clustalw2.patch/t_coffee_source/util_lib/util_constraints_list.c:4494: FORBIDEN ==> FORBIDDEN
data/t-coffee-13.41.0.28bdc39+dfsg/.pc/clustalw2.patch/t_coffee_source/util_lib/util_constraints_list.c:5175: euclidian ==> euclidean
data/t-coffee-13.41.0.28bdc39+dfsg/.pc/clustalw2.patch/t_coffee_source/data_headers/programmes_define.h:191: REFORMATING ==> REFORMATTING
data/t-coffee-13.41.0.28bdc39+dfsg/.pc/increase_max_pid.patch/t_coffee_source/coffee_defines.h:239: FORBIDEN ==> FORBIDDEN
data/t-coffee-13.41.0.28bdc39+dfsg/.pc/increase_max_pid.patch/t_coffee_source/coffee_defines.h:265: FORBIDEN ==> FORBIDDEN